Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21912.t1 | XP_003610912.2 | 93.7 | 783 | 46 | 1 | 1 | 783 | 1 | 780 | 3.50E-214 | 755 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21912.t1 | Q80WA4 | 34.1 | 173 | 108 | 3 | 194 | 363 | 55 | 224 | 9.9e-16 | 87.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21912.t1 | G7K7W5 | 93.7 | 783 | 46 | 1 | 1 | 783 | 1 | 780 | 2.5e-214 | 755.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050237 | MS.gene21912 | -0.805761 | 1.14E-49 | -1.69E-46 |
MS.gene050384 | MS.gene21912 | -0.816548 | 5.23E-52 | -1.69E-46 |
MS.gene050386 | MS.gene21912 | -0.81587 | 7.41E-52 | -1.69E-46 |
MS.gene050807 | MS.gene21912 | -0.805376 | 1.38E-49 | -1.69E-46 |
MS.gene050826 | MS.gene21912 | -0.817933 | 2.55E-52 | -1.69E-46 |
MS.gene051316 | MS.gene21912 | 0.825553 | 4.40E-54 | -1.69E-46 |
MS.gene051631 | MS.gene21912 | 0.825303 | 5.04E-54 | -1.69E-46 |
MS.gene052239 | MS.gene21912 | 0.805415 | 1.35E-49 | -1.69E-46 |
MS.gene052242 | MS.gene21912 | 0.806887 | 6.61E-50 | -1.69E-46 |
MS.gene052677 | MS.gene21912 | -0.802385 | 5.75E-49 | -1.69E-46 |
MS.gene05761 | MS.gene21912 | -0.804953 | 1.69E-49 | -1.69E-46 |
MS.gene060259 | MS.gene21912 | -0.803171 | 3.96E-49 | -1.69E-46 |
MS.gene060918 | MS.gene21912 | -0.802483 | 5.49E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene21912 | MS.gene072735 | PPI |
MS.gene21656 | MS.gene21912 | PPI |
MS.gene21912 | MS.gene22316 | PPI |
MS.gene21912 | MS.gene04307 | PPI |
MS.gene21912 | MS.gene024674 | PPI |
MS.gene94960 | MS.gene21912 | PPI |
MS.gene21912 | MS.gene53118 | PPI |
MS.gene21912 | MS.gene78555 | PPI |
MS.gene21912 | MS.gene04185 | PPI |
MS.gene21912 | MS.gene05659 | PPI |
MS.gene21912 | MS.gene55323 | PPI |
MS.gene85900 | MS.gene21912 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21912.t1 | MTR_5g008420 | 96.935 | 783 | 21 | 1 | 1 | 783 | 1 | 780 | 0.0 | 1488 |
MS.gene21912.t1 | MTR_7g010340 | 58.247 | 673 | 132 | 18 | 1 | 664 | 1 | 533 | 0.0 | 627 |
MS.gene21912.t1 | MTR_7g010340 | 56.612 | 673 | 127 | 18 | 1 | 664 | 1 | 517 | 0.0 | 601 |
MS.gene21912.t1 | MTR_3g104280 | 41.843 | 521 | 231 | 25 | 188 | 669 | 86 | 573 | 1.14e-67 | 235 |
MS.gene21912.t1 | MTR_3g104270 | 41.211 | 512 | 228 | 22 | 188 | 660 | 86 | 563 | 3.45e-66 | 231 |
MS.gene21912.t1 | MTR_1g016760 | 47.273 | 275 | 117 | 9 | 188 | 454 | 112 | 366 | 2.93e-62 | 221 |
MS.gene21912.t1 | MTR_7g010360 | 45.912 | 318 | 67 | 12 | 1 | 295 | 1 | 236 | 3.73e-45 | 174 |
MS.gene21912.t1 | MTR_6g012630 | 27.174 | 184 | 115 | 7 | 182 | 355 | 42 | 216 | 4.24e-11 | 66.6 |
MS.gene21912.t1 | MTR_6g012630 | 27.174 | 184 | 115 | 7 | 182 | 355 | 42 | 216 | 6.71e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21912.t1 | AT1G33680 | 41.855 | 841 | 322 | 33 | 1 | 753 | 1 | 762 | 1.27e-144 | 443 |
MS.gene21912.t1 | AT4G10070 | 44.220 | 744 | 317 | 35 | 1 | 706 | 1 | 684 | 6.15e-136 | 418 |
MS.gene21912.t1 | AT2G25970 | 47.479 | 238 | 123 | 2 | 188 | 424 | 134 | 370 | 6.12e-54 | 197 |
MS.gene21912.t1 | AT5G50940 | 43.836 | 73 | 40 | 1 | 188 | 260 | 189 | 260 | 4.61e-12 | 67.8 |
Find 294 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCACCTGGTTGCCCATAAC+TGG | 0.089662 | 5.1:+2414074 | None:intergenic |
TATGACTCAACCCAAGTTTA+TGG | 0.200615 | 5.1:-2413724 | MS.gene21912:CDS |
TTGTTAGCGGCTGGTTGTTC+AGG | 0.233674 | 5.1:+2413979 | None:intergenic |
GTTCAGGTTGGCGTACTTAT+TGG | 0.253689 | 5.1:-2418693 | MS.gene21912:intron |
CAGTTTATCACCTTCTCATT+TGG | 0.256871 | 5.1:+2418318 | None:intergenic |
ACCAGGCGAGATTCCGTATC+AGG | 0.257233 | 5.1:-2414265 | MS.gene21912:CDS |
TGCTCAGTTGACTCCATTGA+TGG | 0.270905 | 5.1:+2421451 | None:intergenic |
AAGAGCCTGCAGACCAAAAC+TGG | 0.283772 | 5.1:-2418183 | MS.gene21912:CDS |
GGCTGTTCAGTTGCTTTAGA+TGG | 0.289174 | 5.1:+2421472 | None:intergenic |
CAGCCTCAGGGTCAGGATTA+TGG | 0.301261 | 5.1:-2414543 | MS.gene21912:CDS |
AAACTTGGGTTGAGTCATAT+TGG | 0.301611 | 5.1:+2413728 | None:intergenic |
CTGGATGCGTGCCCCAGTTT+TGG | 0.305898 | 5.1:+2418170 | None:intergenic |
TCATATGCACCTCCTCCTTA+TGG | 0.307453 | 5.1:-2414813 | MS.gene21912:CDS |
ACTGAGCAAGACGCTTCTTC+TGG | 0.308215 | 5.1:-2421436 | MS.gene21912:CDS |
ATCTGGTGGTCCACCCCAAT+GGG | 0.316449 | 5.1:-2414913 | MS.gene21912:CDS |
GAAAGGACTGTCCAAGTTAC+TGG | 0.320619 | 5.1:-2417222 | MS.gene21912:CDS |
CACTGTTGTAAGCAGGATCC+TGG | 0.326871 | 5.1:+2413932 | None:intergenic |
CCTGGTGGACAGCCCAGTTA+TGG | 0.329458 | 5.1:-2414087 | MS.gene21912:CDS |
CCAAGGAGCAGTTACGGTTC+TGG | 0.331193 | 5.1:-2414768 | MS.gene21912:CDS |
GGCGTACTTATTGGCAAATC+TGG | 0.332530 | 5.1:-2418684 | MS.gene21912:CDS |
GCTCAGATGAATTACAATTA+TGG | 0.338699 | 5.1:-2414567 | MS.gene21912:CDS |
AGAAGGACCGGTACCATGTT+GGG | 0.340479 | 5.1:+2414617 | None:intergenic |
GCAAATCTGGTGACACTATA+CGG | 0.340935 | 5.1:-2418671 | MS.gene21912:CDS |
ACAAGGCCCGTTGAACTAAT+AGG | 0.346892 | 5.1:-2418579 | MS.gene21912:CDS |
CGCTTACAATCAGAAGAAAC+AGG | 0.347578 | 5.1:+2422731 | None:intergenic |
TTCTTTAGAATCATCGCCTT+CGG | 0.348747 | 5.1:+2417242 | None:intergenic |
ACGGTACCTGCAGTATAATT+CGG | 0.353164 | 5.1:-2418652 | MS.gene21912:CDS |
TCCTTCTCCTTTACCCTCCA+TGG | 0.353311 | 5.1:-2414601 | MS.gene21912:CDS |
GGGTAAGCTGGCTGAGGATT+TGG | 0.356446 | 5.1:+2414408 | None:intergenic |
GGTCAGCGAGGTTCACATTA+TGG | 0.357233 | 5.1:-2414891 | MS.gene21912:CDS |
ATGTCGTACCTAGGTCATTC+TGG | 0.361703 | 5.1:+2422591 | None:intergenic |
CCATATCCATATGCATCATC+TGG | 0.361945 | 5.1:-2414204 | MS.gene21912:CDS |
AGGTCATCATCAGGTGGTTT+TGG | 0.368182 | 5.1:-2414963 | MS.gene21912:CDS |
TTACAGAATGACACTTCTTC+AGG | 0.372488 | 5.1:-2421376 | MS.gene21912:CDS |
CAGGGGCCACCCTCACATAA+TGG | 0.372854 | 5.1:-2414717 | MS.gene21912:CDS |
TCCTTTCGAAAATGCTCCTT+CGG | 0.373329 | 5.1:-2421623 | MS.gene21912:CDS |
ATGCAGGTCGGGTTAATCAT+TGG | 0.377319 | 5.1:-2418225 | MS.gene21912:intron |
AACTTGGGTTGAGTCATATT+GGG | 0.378107 | 5.1:+2413729 | None:intergenic |
GCAGGAGCACCGGCTGCTGC+TGG | 0.382386 | 5.1:+2413793 | None:intergenic |
GGGGACTGAACTGGGATGCT+GGG | 0.385001 | 5.1:+2414638 | None:intergenic |
GCTGCATAGCCTGCTGGTTG+AGG | 0.385429 | 5.1:+2413820 | None:intergenic |
CCAGATGATGCATATGGATA+TGG | 0.385841 | 5.1:+2414204 | None:intergenic |
CTTTGCTGGAATAGCCTATC+AGG | 0.389163 | 5.1:-2414983 | MS.gene21912:intron |
GCGCATAACTAGCTGTGGCC+TGG | 0.391139 | 5.1:+2414052 | None:intergenic |
GTTGTTCAGGGTAAGTCTGC+TGG | 0.392931 | 5.1:+2413992 | None:intergenic |
CAAGCAGCATATCCTACATA+TGG | 0.393896 | 5.1:-2414174 | MS.gene21912:CDS |
AATGGTGGATATGATTATTA+TGG | 0.394577 | 5.1:-2414699 | MS.gene21912:CDS |
TGCAGGTCGGGTTAATCATT+GGG | 0.396077 | 5.1:-2418224 | MS.gene21912:intron |
AATCGAGGTTCCTAGCAATA+AGG | 0.397890 | 5.1:-2421311 | MS.gene21912:intron |
CGCATAACTAGCTGTGGCCT+GGG | 0.398000 | 5.1:+2414053 | None:intergenic |
GTGTTGGCAGCTAATACTAA+TGG | 0.398131 | 5.1:-2421697 | MS.gene21912:intron |
CCATAACTGGGCTGTCCACC+AGG | 0.401150 | 5.1:+2414087 | None:intergenic |
TCCTTACCAGAGTCCTCAAC+AGG | 0.405365 | 5.1:+2421508 | None:intergenic |
CTAGCTGTGGCCTGGGCACC+TGG | 0.405662 | 5.1:+2414060 | None:intergenic |
CTGGTGGACAGCCCAGTTAT+GGG | 0.408280 | 5.1:-2414086 | MS.gene21912:CDS |
TACCGTCCGCCACGAGGATC+TGG | 0.408928 | 5.1:-2414930 | MS.gene21912:CDS |
TCTTTAGAATCATCGCCTTC+GGG | 0.410748 | 5.1:+2417243 | None:intergenic |
ATCGAGGAGCACCATAAACT+TGG | 0.411128 | 5.1:+2413713 | None:intergenic |
AACTGGGCTGTCCACCAGGC+TGG | 0.412125 | 5.1:+2414091 | None:intergenic |
TCGCTTGAGCACTGGCTTGA+GGG | 0.412219 | 5.1:+2414388 | None:intergenic |
CTGCTGGTTGAGGGTTAGAT+TGG | 0.412622 | 5.1:+2413830 | None:intergenic |
GGGTTAATCATTGGGAAAGG+TGG | 0.413875 | 5.1:-2418216 | MS.gene21912:CDS |
TGAACCTCGCTGACCCCATT+GGG | 0.416626 | 5.1:+2414899 | None:intergenic |
TCGCCTGGTTGAGTGGCTCT+AGG | 0.418678 | 5.1:+2414279 | None:intergenic |
CGTTGAACTAATAGGAACTT+TGG | 0.421875 | 5.1:-2418571 | MS.gene21912:CDS |
GCCGCTAACAACGCAGGTTA+TGG | 0.423666 | 5.1:-2413967 | MS.gene21912:CDS |
GCCTCTTATCACCAGTAACT+TGG | 0.424651 | 5.1:+2417211 | None:intergenic |
CAACCCACACCAACTCAAAC+TGG | 0.425178 | 5.1:-2413859 | MS.gene21912:CDS |
CAAGTTGGTCCTACTGGTTA+TGG | 0.425563 | 5.1:-2414030 | MS.gene21912:CDS |
TAATTGTAATTCATCTGAGC+TGG | 0.428502 | 5.1:+2414570 | None:intergenic |
TATGCACCTCCCCAGCAGTA+TGG | 0.428958 | 5.1:-2414363 | MS.gene21912:CDS |
CGGTACCTGCAGTATAATTC+GGG | 0.432942 | 5.1:-2418651 | MS.gene21912:CDS |
TTACAATTATGGACAGCCTC+AGG | 0.433579 | 5.1:-2414556 | MS.gene21912:CDS |
GGATGTCCTGCCTGCTGATA+AGG | 0.436143 | 5.1:+2414510 | None:intergenic |
GGACAACATCCACAGTCTTA+TGG | 0.440152 | 5.1:-2414306 | MS.gene21912:CDS |
AAAGTTCCTATTAGTTCAAC+GGG | 0.441107 | 5.1:+2418573 | None:intergenic |
CATCAGCATCCCTAGTGATC+TGG | 0.442017 | 5.1:+2418619 | None:intergenic |
TACACCGTCAGTGTTGGATT+CGG | 0.445096 | 5.1:+2422679 | None:intergenic |
ATCTCTTTGACATCCTCAAC+GGG | 0.445474 | 5.1:+2421532 | None:intergenic |
GATTGATTATGAGAAGGATA+TGG | 0.449530 | 5.1:+2414834 | None:intergenic |
TATGCGCAAGTTGGTCCTAC+TGG | 0.450191 | 5.1:-2414036 | MS.gene21912:CDS |
GGTACAGCTGCATAGCCTGC+TGG | 0.451375 | 5.1:+2413814 | None:intergenic |
GAAATTCCACAGGCTGATGC+TGG | 0.452709 | 5.1:-2418420 | MS.gene21912:intron |
GGGTCAATAGAGCTGGAATC+AGG | 0.454268 | 5.1:+2421403 | None:intergenic |
CAAAACTGGGGCACGCATCC+AGG | 0.456019 | 5.1:-2418169 | MS.gene21912:intron |
TGCATAATTCGCTTGAGCAC+TGG | 0.456659 | 5.1:+2414380 | None:intergenic |
TATGGCAAGCCACCGTTGTA+TGG | 0.457045 | 5.1:-2414345 | MS.gene21912:CDS |
GTGGCGGACGGTAGGCCTGC+TGG | 0.458635 | 5.1:+2414940 | None:intergenic |
ACCGTCAGTGTTGGATTCGG+TGG | 0.459315 | 5.1:+2422682 | None:intergenic |
ACGGTGGCTTGCCATACTGC+TGG | 0.460842 | 5.1:+2414352 | None:intergenic |
CCCGCAGTCTGCACCTGGAC+AGG | 0.461205 | 5.1:-2414121 | MS.gene21912:CDS |
CTCCCCTGCTCAGGCTATCG+TGG | 0.463470 | 5.1:-2418367 | MS.gene21912:CDS |
CTGCATAGCCTGCTGGTTGA+GGG | 0.464272 | 5.1:+2413821 | None:intergenic |
GAGCAGTTACGGTTCTGGTT+GGG | 0.467510 | 5.1:-2414763 | MS.gene21912:CDS |
TCGAGGCCTCTCCCCTGCTC+AGG | 0.468246 | 5.1:-2418376 | MS.gene21912:CDS |
GGACATCCTCAACAAGGTTA+TGG | 0.468279 | 5.1:-2414495 | MS.gene21912:CDS |
TGGAAATTATCCTCAACATA+TGG | 0.468726 | 5.1:-2414793 | MS.gene21912:CDS |
GCCGGTGCTCCTGCAGCATA+CGG | 0.469173 | 5.1:-2413784 | MS.gene21912:CDS |
TGTTAGCGGCTGGTTGTTCA+GGG | 0.470020 | 5.1:+2413980 | None:intergenic |
GGCTGGGCATAAACCTGTCC+AGG | 0.472801 | 5.1:+2414108 | None:intergenic |
CCACCTGATGATGACCTGAT+AGG | 0.474279 | 5.1:+2414969 | None:intergenic |
CCCTGATACGGAATCTCGCC+TGG | 0.475637 | 5.1:+2414264 | None:intergenic |
CGGTGGCTTGCCATACTGCT+GGG | 0.476941 | 5.1:+2414353 | None:intergenic |
CCTCCATATGGATATTGTGC+AGG | 0.477000 | 5.1:+2414435 | None:intergenic |
AAGCAGGATCCTGGGGTGCT+TGG | 0.479506 | 5.1:+2413941 | None:intergenic |
TTATGGACAGCCTCAGGGTC+AGG | 0.481108 | 5.1:-2414550 | MS.gene21912:CDS |
GGTAAGTCTGCTGGGAAGAC+GGG | 0.482908 | 5.1:+2414001 | None:intergenic |
TAACCTGCGTTGTTAGCGGC+TGG | 0.483555 | 5.1:+2413970 | None:intergenic |
GGATTTGGATGTCCTCCATA+TGG | 0.484661 | 5.1:+2414423 | None:intergenic |
ACATAACCTGGCTGCACAGT+TGG | 0.486266 | 5.1:+2413883 | None:intergenic |
ACTGTTGTAAGCAGGATCCT+GGG | 0.490279 | 5.1:+2413933 | None:intergenic |
CCAGAACCGTAACTGCTCCT+TGG | 0.490935 | 5.1:+2414768 | None:intergenic |
GATCTGGTGGTCCACCCCAA+TGG | 0.493018 | 5.1:-2414914 | MS.gene21912:CDS |
AGCAACTGAACAGCCATCAA+TGG | 0.493080 | 5.1:-2421464 | MS.gene21912:CDS |
GCACCTGGTTGCCCATAACT+GGG | 0.497721 | 5.1:+2414075 | None:intergenic |
GTGAACCTCGCTGACCCCAT+TGG | 0.497859 | 5.1:+2414898 | None:intergenic |
CCTTCTCCTTTACCCTCCAT+GGG | 0.498897 | 5.1:-2414600 | MS.gene21912:CDS |
CTGAGCTGGGGATGGTCCCA+TGG | 0.499599 | 5.1:+2414584 | None:intergenic |
GAGATTCCTGTTGAGGACTC+TGG | 0.499644 | 5.1:-2421514 | MS.gene21912:CDS |
CAGCCCAGTTATGGGCAACC+AGG | 0.499664 | 5.1:-2414078 | MS.gene21912:CDS |
CGCCTGGTTGAGTGGCTCTA+GGG | 0.500281 | 5.1:+2414280 | None:intergenic |
TTATGGGCAACCAGGTGCCC+AGG | 0.502933 | 5.1:-2414070 | MS.gene21912:CDS |
GCACTGGCTTGAGGGTAAGC+TGG | 0.504108 | 5.1:+2414396 | None:intergenic |
ATGGATATTGTGCAGGGCCA+CGG | 0.504139 | 5.1:+2414442 | None:intergenic |
TCCAAGTTACTGGTGATAAG+AGG | 0.505553 | 5.1:-2417212 | MS.gene21912:CDS |
TTCGCTTGAGCACTGGCTTG+AGG | 0.507075 | 5.1:+2414387 | None:intergenic |
TCGTGTGGTTGTGTCAGACT+CGG | 0.507762 | 5.1:+2421336 | None:intergenic |
GATGGTCCCATGGAGGGTAA+AGG | 0.507966 | 5.1:+2414594 | None:intergenic |
GAAGAAACAGGGCTTGTAGC+TGG | 0.509067 | 5.1:+2422743 | None:intergenic |
CAAAGTTCCTATTAGTTCAA+CGG | 0.510784 | 5.1:+2418572 | None:intergenic |
ATAACCAGTTTGAGTTGGTG+TGG | 0.511225 | 5.1:+2413855 | None:intergenic |
GGACAGGTTTATGCCCAGCC+TGG | 0.511456 | 5.1:-2414105 | MS.gene21912:CDS |
CACCCTAGAGCCACTCAACC+AGG | 0.511574 | 5.1:-2414282 | MS.gene21912:CDS |
CGATAGCCTGAGCAGGGGAG+AGG | 0.512286 | 5.1:+2418370 | None:intergenic |
TGAAGAAGTGTCATTCTGTA+AGG | 0.512662 | 5.1:+2421378 | None:intergenic |
TTGTTCAGGGTAAGTCTGCT+GGG | 0.512955 | 5.1:+2413993 | None:intergenic |
TGTTGAGGATAATTTCCATA+AGG | 0.513807 | 5.1:+2414798 | None:intergenic |
TCTACTCCAGCACAATCATA+TGG | 0.514595 | 5.1:-2414240 | MS.gene21912:CDS |
GGCCCTGCACAATATCCATA+TGG | 0.514725 | 5.1:-2414438 | MS.gene21912:CDS |
ATGGCTCCAAGGAGCAGTTA+CGG | 0.518058 | 5.1:-2414774 | MS.gene21912:CDS |
ACTGTCTTGCCGTATGCTGC+AGG | 0.519390 | 5.1:+2413775 | None:intergenic |
TAAGGTGGGGTCAATAGAGC+TGG | 0.520444 | 5.1:+2421396 | None:intergenic |
GTGCAAAGATCCAGATCACT+AGG | 0.520840 | 5.1:-2418629 | MS.gene21912:CDS |
GCCGTATGCTGCAGGAGCAC+CGG | 0.521123 | 5.1:+2413783 | None:intergenic |
GAGAAGGACCGGTACCATGT+TGG | 0.521552 | 5.1:+2414616 | None:intergenic |
TAGCCTATCAGGTCATCATC+AGG | 0.521896 | 5.1:-2414972 | MS.gene21912:CDS |
AGGCCTCGAGCTACAAGTGC+AGG | 0.522201 | 5.1:+2418390 | None:intergenic |
CGGAATCTCGCCTGGTTGAG+TGG | 0.522392 | 5.1:+2414272 | None:intergenic |
TGGGCATAAGCAGCGGGCTG+AGG | 0.523158 | 5.1:+2413748 | None:intergenic |
GCAGCTGTACCAGCAGCAGC+CGG | 0.525098 | 5.1:-2413802 | MS.gene21912:CDS |
TACTAATGGACATCAAGAAA+AGG | 0.526778 | 5.1:-2421683 | MS.gene21912:CDS |
CCTGTCCAGGTGCAGACTGC+GGG | 0.527053 | 5.1:+2414121 | None:intergenic |
AGTCACCCGCAGTCTGCACC+TGG | 0.528460 | 5.1:-2414126 | MS.gene21912:CDS |
GGGTAAGTCTGCTGGGAAGA+CGG | 0.528672 | 5.1:+2414000 | None:intergenic |
GGTTAATCATTGGGAAAGGT+GGG | 0.531773 | 5.1:-2418215 | MS.gene21912:CDS |
AATTGTAATTCATCTGAGCT+GGG | 0.532849 | 5.1:+2414571 | None:intergenic |
ACGGTTCTGGTTGGGAGCAA+AGG | 0.533493 | 5.1:-2414755 | MS.gene21912:CDS |
GGCCCCTGAAAACTCTGGTG+AGG | 0.534001 | 5.1:+2414732 | None:intergenic |
AGTTTCTACACCGTCAGTGT+TGG | 0.535493 | 5.1:+2422673 | None:intergenic |
AATACACATACCTTATTGCT+AGG | 0.536065 | 5.1:+2421301 | None:intergenic |
GATAAAAGAAGTCTTGAGCC+AGG | 0.537717 | 5.1:-2417166 | MS.gene21912:intron |
ACTGGGCTGTCCACCAGGCT+GGG | 0.539109 | 5.1:+2414092 | None:intergenic |
CCTAGCTATGGCTGAAGAAG+AGG | 0.540273 | 5.1:-2422780 | None:intergenic |
GCCATAACCTGCGTTGTTAG+CGG | 0.542816 | 5.1:+2413966 | None:intergenic |
GATCCCACGATAGCCTGAGC+AGG | 0.544382 | 5.1:+2418363 | None:intergenic |
TCCTGTTGAGGACTCTGGTA+AGG | 0.544945 | 5.1:-2421509 | MS.gene21912:CDS |
TTATGGCTACCAAGCACCCC+AGG | 0.545153 | 5.1:-2413950 | MS.gene21912:CDS |
TCCCCTGCTCAGGCTATCGT+GGG | 0.545298 | 5.1:-2418366 | MS.gene21912:CDS |
GAAGTGTCATTCTGTAAGGT+GGG | 0.546448 | 5.1:+2421382 | None:intergenic |
TAACCAGTTTGAGTTGGTGT+GGG | 0.548410 | 5.1:+2413856 | None:intergenic |
CTGGGATGCTGGGCAGATGA+AGG | 0.550410 | 5.1:+2414648 | None:intergenic |
TCATCAGACACCTTATCAGC+AGG | 0.553463 | 5.1:-2414520 | MS.gene21912:CDS |
CCTCGCTGACCCCATTGGGG+TGG | 0.554723 | 5.1:+2414903 | None:intergenic |
GATGGCCCAGATGATGCATA+TGG | 0.555394 | 5.1:+2414198 | None:intergenic |
AGCTGGGGATGGTCCCATGG+AGG | 0.556204 | 5.1:+2414587 | None:intergenic |
GCAGCTCCAACTGTGCAGCC+AGG | 0.558834 | 5.1:-2413889 | MS.gene21912:CDS |
GGAGCAGTTACGGTTCTGGT+TGG | 0.559653 | 5.1:-2414764 | MS.gene21912:CDS |
CCGTCAGTGTTGGATTCGGT+GGG | 0.560541 | 5.1:+2422683 | None:intergenic |
GGTGGATATGATTATTATGG+TGG | 0.562699 | 5.1:-2414696 | MS.gene21912:CDS |
CAATCTAACCCTCAACCAGC+AGG | 0.562879 | 5.1:-2413829 | MS.gene21912:CDS |
TCATATTGGGCATAAGCAGC+GGG | 0.563343 | 5.1:+2413742 | None:intergenic |
TGGTCATAACCAGTTTGAGT+TGG | 0.565397 | 5.1:+2413850 | None:intergenic |
AAGCAGCATATCCTACATAT+GGG | 0.567067 | 5.1:-2414173 | MS.gene21912:CDS |
GAAGGACCGGTACCATGTTG+GGG | 0.570002 | 5.1:+2414618 | None:intergenic |
GCAGCGCCACTGTTGTAAGC+AGG | 0.571040 | 5.1:+2413925 | None:intergenic |
CTCCTTGGAGCCATATGTTG+AGG | 0.573692 | 5.1:+2414783 | None:intergenic |
AAGGCGATGATTCTAAAGAA+AGG | 0.574886 | 5.1:-2417239 | MS.gene21912:CDS |
AGAGCCTGCAGACCAAAACT+GGG | 0.576264 | 5.1:-2418182 | MS.gene21912:CDS |
AGATCCTCGTGGCGGACGGT+AGG | 0.576333 | 5.1:+2414932 | None:intergenic |
CATATCCATATGCATCATCT+GGG | 0.577251 | 5.1:-2414203 | MS.gene21912:CDS |
AGAAGTGTCATTCTGTAAGG+TGG | 0.579993 | 5.1:+2421381 | None:intergenic |
TGACGCCGCTGCAGTTGCTG+AGG | 0.581663 | 5.1:-2422651 | MS.gene21912:CDS |
TAATTCATCTGAGCTGGGGA+TGG | 0.582659 | 5.1:+2414576 | None:intergenic |
CTGTTGTAAGCAGGATCCTG+GGG | 0.583236 | 5.1:+2413934 | None:intergenic |
CACCAGATCCTCGTGGCGGA+CGG | 0.583322 | 5.1:+2414928 | None:intergenic |
GGATGTTGTCCTTGTGAAGG+TGG | 0.583512 | 5.1:+2414318 | None:intergenic |
CCCATGGAGGGTAAAGGAGA+AGG | 0.583548 | 5.1:+2414600 | None:intergenic |
GGATAATTTCCATAAGGAGG+AGG | 0.583935 | 5.1:+2414804 | None:intergenic |
CATATGACTATCAGCACCGC+GGG | 0.584630 | 5.1:-2414857 | MS.gene21912:CDS |
CTCCATATGGATATTGTGCA+GGG | 0.585287 | 5.1:+2414436 | None:intergenic |
GGAGGGTAAAGGAGAAGGAC+CGG | 0.585487 | 5.1:+2414605 | None:intergenic |
GTTGTGTCAGACTCGGATAT+AGG | 0.586274 | 5.1:+2421343 | None:intergenic |
CGGTGCTGATAGTCATATGA+TGG | 0.586322 | 5.1:+2414861 | None:intergenic |
TGACTGTAACCATCTGCAGC+TGG | 0.588200 | 5.1:+2414144 | None:intergenic |
TGTCAAAGAGATTCCTGTTG+AGG | 0.588403 | 5.1:-2421521 | MS.gene21912:CDS |
CCTTGTCCATAACCTTGTTG+AGG | 0.589130 | 5.1:+2414489 | None:intergenic |
GCTTGAGGGTAAGCTGGCTG+AGG | 0.589420 | 5.1:+2414402 | None:intergenic |
GGCTTGCCATACTGCTGGGG+AGG | 0.589568 | 5.1:+2414357 | None:intergenic |
GCTGGGGATGGTCCCATGGA+GGG | 0.591933 | 5.1:+2414588 | None:intergenic |
GCTGGTGCAGACCCATATGT+AGG | 0.592494 | 5.1:+2414162 | None:intergenic |
ATCCCACGATAGCCTGAGCA+GGG | 0.592936 | 5.1:+2418364 | None:intergenic |
ATCATATCCACCATTATGTG+AGG | 0.594833 | 5.1:+2414707 | None:intergenic |
AATCTCTTTGACATCCTCAA+CGG | 0.595049 | 5.1:+2421531 | None:intergenic |
ACCTGTCCAGGTGCAGACTG+CGG | 0.595220 | 5.1:+2414120 | None:intergenic |
TACAATTATGGACAGCCTCA+GGG | 0.595891 | 5.1:-2414555 | MS.gene21912:CDS |
ATCCTCAACGGGAATCACAT+TGG | 0.596044 | 5.1:+2421543 | None:intergenic |
GTCATATTGGGCATAAGCAG+CGG | 0.596829 | 5.1:+2413741 | None:intergenic |
GATACAAGTTCCAAATGAGA+AGG | 0.597304 | 5.1:-2418328 | MS.gene21912:intron |
TCGCCTTCGGGAAGATGTTG+AGG | 0.598864 | 5.1:+2417255 | None:intergenic |
GTAGGATATGCTGCTTGTGA+TGG | 0.599015 | 5.1:+2414180 | None:intergenic |
TTTCGAAAATGCTCCTTCGG+AGG | 0.601219 | 5.1:-2421620 | MS.gene21912:CDS |
ACGGGCCTTGTTGAAGAGTG+AGG | 0.603130 | 5.1:+2418591 | None:intergenic |
ATCCTCAACATATGGCTCCA+AGG | 0.603445 | 5.1:-2414785 | MS.gene21912:CDS |
GGGTCTGCACCAGCTGCAGA+TGG | 0.603725 | 5.1:-2414153 | MS.gene21912:CDS |
TTGCACCCGAATTATACTGC+AGG | 0.604515 | 5.1:+2418646 | None:intergenic |
CTCTGGTAAGGAAAATGACA+AGG | 0.605178 | 5.1:-2421497 | MS.gene21912:CDS |
TGAGGATAATTTCCATAAGG+AGG | 0.609076 | 5.1:+2414801 | None:intergenic |
CCTCAACAAGGTTATGGACA+AGG | 0.609190 | 5.1:-2414489 | MS.gene21912:CDS |
CTGGTTGAGTGGCTCTAGGG+TGG | 0.609688 | 5.1:+2414283 | None:intergenic |
CCAGGCGAGATTCCGTATCA+GGG | 0.609811 | 5.1:-2414264 | MS.gene21912:CDS |
TGGTTATCGTCGTCAAGACG+AGG | 0.613071 | 5.1:+2422611 | None:intergenic |
CAGGTTTATGCCCAGCCTGG+TGG | 0.613647 | 5.1:-2414102 | MS.gene21912:CDS |
AACTTGCGCATAACTAGCTG+TGG | 0.614751 | 5.1:+2414047 | None:intergenic |
GCATATGATTGATTATGAGA+AGG | 0.617478 | 5.1:+2414828 | None:intergenic |
CGTCCGCCACGAGGATCTGG+TGG | 0.619194 | 5.1:-2414927 | MS.gene21912:CDS |
CTGATCCTCACTCTTCAACA+AGG | 0.619869 | 5.1:-2418596 | MS.gene21912:CDS |
GTCGGGTTAATCATTGGGAA+AGG | 0.620723 | 5.1:-2418219 | MS.gene21912:CDS |
ACATCTTGAACTTCCTCCGA+AGG | 0.620832 | 5.1:+2421607 | None:intergenic |
TCGAGGAGCACCATAAACTT+GGG | 0.623385 | 5.1:+2413714 | None:intergenic |
CAGACACCTTATCAGCAGGC+AGG | 0.625185 | 5.1:-2414516 | MS.gene21912:CDS |
ACAGCTAGTTATGCGCAAGT+TGG | 0.627057 | 5.1:-2414045 | MS.gene21912:CDS |
GTTAATCATTGGGAAAGGTG+GGG | 0.628317 | 5.1:-2418214 | MS.gene21912:CDS |
GGTGTGGGTTGAACATAACC+TGG | 0.628424 | 5.1:+2413871 | None:intergenic |
TGTGGATGTTGTCCTTGTGA+AGG | 0.628816 | 5.1:+2414315 | None:intergenic |
GCTGGAGTAGAACCCTGATA+CGG | 0.630359 | 5.1:+2414252 | None:intergenic |
TCAAGAAAAGGAGGTTGCTG+AGG | 0.632026 | 5.1:-2421671 | MS.gene21912:CDS |
GGAATCACATTGGCATCAGT+AGG | 0.633112 | 5.1:+2421553 | None:intergenic |
ACTGTGCCATATGATTGTGC+TGG | 0.633161 | 5.1:+2414234 | None:intergenic |
AGGGTGGCCCCTGAAAACTC+TGG | 0.635256 | 5.1:+2414727 | None:intergenic |
TGCCAATGTGATTCCCGTTG+AGG | 0.635292 | 5.1:-2421545 | MS.gene21912:CDS |
TAATGGACATCAAGAAAAGG+AGG | 0.635993 | 5.1:-2421680 | MS.gene21912:CDS |
GGTGGCTTGCCATACTGCTG+GGG | 0.637360 | 5.1:+2414354 | None:intergenic |
CAGGATCCTGCTTACAACAG+TGG | 0.637586 | 5.1:-2413931 | MS.gene21912:CDS |
ATCGTCCTCAGCAACTGCAG+CGG | 0.638462 | 5.1:+2422646 | None:intergenic |
TCATATCCACCATTATGTGA+GGG | 0.639095 | 5.1:+2414708 | None:intergenic |
ATTCCACAGGCTGATGCTGG+AGG | 0.639608 | 5.1:-2418417 | MS.gene21912:intron |
GATTATTATGGTGGACAAAG+CGG | 0.641921 | 5.1:-2414687 | MS.gene21912:CDS |
AAGGACCGGTACCATGTTGG+GGG | 0.643168 | 5.1:+2414619 | None:intergenic |
GATAGTCATATGATGGTGGT+TGG | 0.644576 | 5.1:+2414868 | None:intergenic |
TCTCCTGCACTTGTAGCTCG+AGG | 0.645902 | 5.1:-2418393 | MS.gene21912:CDS |
TATGGTGTGCCACCTTCACA+AGG | 0.647766 | 5.1:-2414327 | MS.gene21912:CDS |
AACTTTGGAAAGCATAGACA+AGG | 0.648448 | 5.1:-2418556 | MS.gene21912:CDS |
CAACCAGCCGCTAACAACGC+AGG | 0.649113 | 5.1:-2413973 | MS.gene21912:CDS |
GGGCCACCCTCACATAATGG+TGG | 0.651219 | 5.1:-2414714 | MS.gene21912:CDS |
CAGGCAGGACATCCTCAACA+AGG | 0.654329 | 5.1:-2414501 | MS.gene21912:CDS |
ATTGTAATTCATCTGAGCTG+GGG | 0.655860 | 5.1:+2414572 | None:intergenic |
TATCCACCATTATGTGAGGG+TGG | 0.659251 | 5.1:+2414711 | None:intergenic |
ATACCTCAACATCTTCCCGA+AGG | 0.661549 | 5.1:-2417258 | MS.gene21912:CDS |
CAGGCCTACCGTCCGCCACG+AGG | 0.664533 | 5.1:-2414936 | MS.gene21912:CDS |
TGCTGATAGTCATATGATGG+TGG | 0.665307 | 5.1:+2414864 | None:intergenic |
CTAGGGTGGCCATAAGACTG+TGG | 0.667005 | 5.1:+2414297 | None:intergenic |
CCACCCCAATGGGGTCAGCG+AGG | 0.668636 | 5.1:-2414903 | MS.gene21912:CDS |
GGGTATGATCCATAACCAGT+AGG | 0.670355 | 5.1:+2414021 | None:intergenic |
TCCCACGATAGCCTGAGCAG+GGG | 0.672197 | 5.1:+2418365 | None:intergenic |
TGCAAAGATCCAGATCACTA+GGG | 0.672341 | 5.1:-2418628 | MS.gene21912:CDS |
CCTGCACAATATCCATATGG+AGG | 0.672775 | 5.1:-2414435 | MS.gene21912:CDS |
GCTTACAATCAGAAGAAACA+GGG | 0.675017 | 5.1:+2422732 | None:intergenic |
CCCACCGAATCCAACACTGA+CGG | 0.677283 | 5.1:-2422683 | MS.gene21912:CDS |
TGAGGCAGAAACAGAAACAG+AGG | 0.677467 | 5.1:-2421653 | MS.gene21912:CDS |
CCTATCAGGTCATCATCAGG+TGG | 0.685141 | 5.1:-2414969 | MS.gene21912:CDS |
AAGTGTCATTCTGTAAGGTG+GGG | 0.686055 | 5.1:+2421383 | None:intergenic |
GACGATAACCAGAATGACCT+AGG | 0.692835 | 5.1:-2422599 | MS.gene21912:intron |
GAACCTCGCTGACCCCATTG+GGG | 0.701978 | 5.1:+2414900 | None:intergenic |
TATGAGAAGGATATGGCCCG+CGG | 0.706134 | 5.1:+2414841 | None:intergenic |
GAATCGAAGTACGAAAACCG+TGG | 0.723766 | 5.1:-2414459 | MS.gene21912:CDS |
GAAGGTGGCACACCATACAA+CGG | 0.724316 | 5.1:+2414333 | None:intergenic |
TCTGGTGGTCCACCCCAATG+GGG | 0.728168 | 5.1:-2414912 | MS.gene21912:CDS |
GGTGGACCACCAGATCCTCG+TGG | 0.736923 | 5.1:+2414921 | None:intergenic |
AATGAATGCTGTGATTGCAG+AGG | 0.739384 | 5.1:-2418523 | MS.gene21912:intron |
TGACCATAATCCTGACCCTG+AGG | 0.742155 | 5.1:+2414540 | None:intergenic |
GGTGGCACACCATACAACGG+TGG | 0.744350 | 5.1:+2414336 | None:intergenic |
TCATATGACTATCAGCACCG+CGG | 0.747919 | 5.1:-2414858 | MS.gene21912:CDS |
GAGCCTGCAGACCAAAACTG+GGG | 0.750434 | 5.1:-2418181 | MS.gene21912:CDS |
GGACCACCAGATCCTCGTGG+CGG | 0.754108 | 5.1:+2414924 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 2413711 | 2422795 | 2413711 | ID=MS.gene21912 |
chr5.1 | mRNA | 2413711 | 2422795 | 2413711 | ID=MS.gene21912.t1;Parent=MS.gene21912 |
chr5.1 | exon | 2422600 | 2422795 | 2422600 | ID=MS.gene21912.t1.exon1;Parent=MS.gene21912.t1 |
chr5.1 | CDS | 2422600 | 2422795 | 2422600 | ID=cds.MS.gene21912.t1;Parent=MS.gene21912.t1 |
chr5.1 | exon | 2421312 | 2421709 | 2421312 | ID=MS.gene21912.t1.exon2;Parent=MS.gene21912.t1 |
chr5.1 | CDS | 2421312 | 2421709 | 2421312 | ID=cds.MS.gene21912.t1;Parent=MS.gene21912.t1 |
chr5.1 | exon | 2418524 | 2418709 | 2418524 | ID=MS.gene21912.t1.exon3;Parent=MS.gene21912.t1 |
chr5.1 | CDS | 2418524 | 2418709 | 2418524 | ID=cds.MS.gene21912.t1;Parent=MS.gene21912.t1 |
chr5.1 | exon | 2418329 | 2418430 | 2418329 | ID=MS.gene21912.t1.exon4;Parent=MS.gene21912.t1 |
chr5.1 | CDS | 2418329 | 2418430 | 2418329 | ID=cds.MS.gene21912.t1;Parent=MS.gene21912.t1 |
chr5.1 | exon | 2418170 | 2418241 | 2418170 | ID=MS.gene21912.t1.exon5;Parent=MS.gene21912.t1 |
chr5.1 | CDS | 2418170 | 2418241 | 2418170 | ID=cds.MS.gene21912.t1;Parent=MS.gene21912.t1 |
chr5.1 | exon | 2417167 | 2417283 | 2417167 | ID=MS.gene21912.t1.exon6;Parent=MS.gene21912.t1 |
chr5.1 | CDS | 2417167 | 2417283 | 2417167 | ID=cds.MS.gene21912.t1;Parent=MS.gene21912.t1 |
chr5.1 | exon | 2413711 | 2414991 | 2413711 | ID=MS.gene21912.t1.exon7;Parent=MS.gene21912.t1 |
chr5.1 | CDS | 2413711 | 2414991 | 2413711 | ID=cds.MS.gene21912.t1;Parent=MS.gene21912.t1 |
Gene Sequence |
Protein sequence |