Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041989.t1 | XP_003615860.2 | 95.6 | 549 | 24 | 0 | 1 | 549 | 1 | 549 | 2.0e-309 | 1070.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041989.t1 | B9SCB6 | 51.6 | 543 | 258 | 2 | 4 | 546 | 12 | 549 | 2.8e-166 | 586.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041989.t1 | G7JZP2 | 95.6 | 549 | 24 | 0 | 1 | 549 | 1 | 549 | 1.5e-309 | 1070.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene066310 | MS.gene041989 | PPI |
| MS.gene041989 | MS.gene42723 | PPI |
| MS.gene038982 | MS.gene041989 | PPI |
| MS.gene041989 | MS.gene069726 | PPI |
| MS.gene066316 | MS.gene041989 | PPI |
| MS.gene041989 | MS.gene045736 | PPI |
| MS.gene77594 | MS.gene041989 | PPI |
| MS.gene038985 | MS.gene041989 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041989.t1 | MTR_5g073200 | 95.628 | 549 | 24 | 0 | 1 | 549 | 1 | 549 | 0.0 | 1080 |
| MS.gene041989.t1 | MTR_5g073260 | 75.092 | 546 | 135 | 1 | 3 | 547 | 5 | 550 | 0.0 | 871 |
| MS.gene041989.t1 | MTR_3g464190 | 73.675 | 547 | 144 | 0 | 3 | 549 | 11 | 557 | 0.0 | 871 |
| MS.gene041989.t1 | MTR_5g094620 | 71.795 | 546 | 134 | 1 | 4 | 549 | 12 | 537 | 0.0 | 835 |
| MS.gene041989.t1 | MTR_6g008560 | 64.781 | 548 | 191 | 2 | 3 | 549 | 11 | 557 | 0.0 | 763 |
| MS.gene041989.t1 | MTR_4g048460 | 65.814 | 547 | 186 | 1 | 3 | 549 | 16 | 561 | 0.0 | 754 |
| MS.gene041989.t1 | MTR_6g039440 | 64.576 | 542 | 191 | 1 | 8 | 549 | 13 | 553 | 0.0 | 752 |
| MS.gene041989.t1 | MTR_5g062230 | 64.945 | 542 | 189 | 1 | 8 | 549 | 13 | 553 | 0.0 | 751 |
| MS.gene041989.t1 | MTR_4g081460 | 55.920 | 549 | 238 | 3 | 3 | 549 | 16 | 562 | 0.0 | 645 |
| MS.gene041989.t1 | MTR_4g048460 | 64.444 | 450 | 159 | 1 | 3 | 452 | 16 | 464 | 0.0 | 601 |
| MS.gene041989.t1 | MTR_6g008560 | 61.845 | 401 | 153 | 0 | 149 | 549 | 1 | 401 | 0.0 | 538 |
| MS.gene041989.t1 | MTR_2g082010 | 43.978 | 548 | 302 | 5 | 5 | 549 | 23 | 568 | 3.80e-170 | 494 |
| MS.gene041989.t1 | MTR_2g081980 | 44.262 | 549 | 299 | 6 | 6 | 549 | 11 | 557 | 3.84e-168 | 488 |
| MS.gene041989.t1 | MTR_8g007515 | 44.465 | 551 | 297 | 7 | 5 | 549 | 9 | 556 | 4.10e-165 | 481 |
| MS.gene041989.t1 | MTR_2g082060 | 41.530 | 549 | 303 | 7 | 6 | 549 | 18 | 553 | 4.61e-152 | 447 |
| MS.gene041989.t1 | MTR_4g019550 | 39.964 | 553 | 311 | 7 | 6 | 549 | 18 | 558 | 6.79e-140 | 416 |
| MS.gene041989.t1 | MTR_2g082050 | 40.117 | 511 | 246 | 8 | 40 | 547 | 4 | 457 | 2.80e-122 | 367 |
| MS.gene041989.t1 | MTR_2g064425 | 35.120 | 541 | 340 | 6 | 9 | 547 | 53 | 584 | 3.39e-104 | 325 |
| MS.gene041989.t1 | MTR_4g045810 | 34.381 | 541 | 349 | 4 | 8 | 547 | 44 | 579 | 5.60e-102 | 319 |
| MS.gene041989.t1 | MTR_8g057020 | 33.824 | 544 | 348 | 7 | 7 | 547 | 53 | 587 | 2.81e-98 | 310 |
| MS.gene041989.t1 | MTR_2g064425 | 33.641 | 541 | 333 | 7 | 9 | 547 | 53 | 569 | 3.62e-97 | 306 |
| MS.gene041989.t1 | MTR_2g065450 | 32.841 | 542 | 350 | 9 | 9 | 547 | 58 | 588 | 2.93e-91 | 291 |
| MS.gene041989.t1 | MTR_2g089120 | 34.008 | 494 | 304 | 7 | 44 | 530 | 70 | 548 | 3.84e-91 | 291 |
| MS.gene041989.t1 | MTR_2g089130 | 32.738 | 504 | 321 | 7 | 31 | 530 | 58 | 547 | 1.01e-89 | 287 |
| MS.gene041989.t1 | MTR_5g094530 | 59.276 | 221 | 53 | 3 | 159 | 377 | 1 | 186 | 1.44e-86 | 266 |
| MS.gene041989.t1 | MTR_2g064425 | 42.424 | 363 | 199 | 5 | 9 | 369 | 53 | 407 | 3.88e-85 | 271 |
| MS.gene041989.t1 | MTR_4g092020 | 31.712 | 514 | 337 | 6 | 38 | 547 | 66 | 569 | 6.32e-82 | 266 |
| MS.gene041989.t1 | MTR_4g092010 | 31.590 | 497 | 320 | 7 | 57 | 545 | 72 | 556 | 7.64e-82 | 266 |
| MS.gene041989.t1 | MTR_7g010710 | 31.204 | 548 | 364 | 9 | 4 | 546 | 13 | 552 | 1.69e-81 | 265 |
| MS.gene041989.t1 | MTR_2g064425 | 40.220 | 363 | 192 | 6 | 9 | 369 | 53 | 392 | 3.60e-78 | 253 |
| MS.gene041989.t1 | MTR_7g057340 | 60.465 | 172 | 68 | 0 | 378 | 549 | 1 | 172 | 1.65e-73 | 231 |
| MS.gene041989.t1 | MTR_2g010960 | 29.644 | 506 | 332 | 10 | 52 | 543 | 22 | 517 | 2.59e-71 | 237 |
| MS.gene041989.t1 | MTR_7g057390 | 58.721 | 172 | 68 | 1 | 378 | 549 | 1 | 169 | 1.08e-67 | 216 |
| MS.gene041989.t1 | MTR_3g015080 | 59.302 | 172 | 32 | 2 | 378 | 549 | 1 | 134 | 1.81e-64 | 206 |
| MS.gene041989.t1 | MTR_3g465090 | 29.563 | 504 | 328 | 13 | 55 | 541 | 21 | 514 | 8.82e-63 | 214 |
| MS.gene041989.t1 | MTR_7g050990 | 63.636 | 165 | 49 | 2 | 193 | 357 | 28 | 181 | 3.43e-62 | 220 |
| MS.gene041989.t1 | MTR_3g052120 | 28.942 | 501 | 333 | 12 | 56 | 541 | 22 | 514 | 2.59e-61 | 211 |
| MS.gene041989.t1 | MTR_3g063170 | 27.475 | 495 | 346 | 6 | 55 | 539 | 21 | 512 | 8.49e-60 | 207 |
| MS.gene041989.t1 | MTR_6g064980 | 27.273 | 495 | 347 | 6 | 55 | 539 | 21 | 512 | 1.27e-59 | 206 |
| MS.gene041989.t1 | MTR_3g063120 | 27.883 | 477 | 332 | 6 | 60 | 527 | 1 | 474 | 2.50e-58 | 202 |
| MS.gene041989.t1 | MTR_3g063140 | 27.273 | 495 | 347 | 6 | 55 | 539 | 21 | 512 | 8.65e-58 | 201 |
| MS.gene041989.t1 | MTR_6g065040 | 27.551 | 392 | 271 | 6 | 145 | 527 | 9 | 396 | 8.77e-48 | 171 |
| MS.gene041989.t1 | MTR_3g063160 | 31.365 | 271 | 179 | 3 | 55 | 321 | 21 | 288 | 5.90e-36 | 136 |
| MS.gene041989.t1 | MTR_3g058160 | 24.907 | 538 | 328 | 18 | 59 | 547 | 59 | 569 | 3.12e-34 | 137 |
| MS.gene041989.t1 | MTR_3g058160 | 24.812 | 532 | 327 | 17 | 62 | 547 | 256 | 760 | 8.06e-34 | 137 |
| MS.gene041989.t1 | MTR_3g058160 | 24.719 | 534 | 329 | 17 | 62 | 549 | 276 | 782 | 8.80e-34 | 137 |
| MS.gene041989.t1 | MTR_3g058160 | 24.719 | 534 | 329 | 17 | 62 | 549 | 269 | 775 | 9.51e-34 | 137 |
| MS.gene041989.t1 | MTR_2g064295 | 23.452 | 533 | 337 | 18 | 62 | 549 | 256 | 762 | 1.19e-32 | 133 |
| MS.gene041989.t1 | MTR_2g012900 | 26.000 | 500 | 322 | 17 | 16 | 479 | 212 | 699 | 1.57e-32 | 133 |
| MS.gene041989.t1 | MTR_3g058160 | 24.314 | 547 | 336 | 18 | 62 | 549 | 276 | 803 | 4.27e-31 | 129 |
| MS.gene041989.t1 | MTR_2g012870 | 24.675 | 539 | 366 | 15 | 16 | 528 | 212 | 736 | 2.78e-30 | 126 |
| MS.gene041989.t1 | MTR_7g011770 | 30.100 | 299 | 177 | 8 | 58 | 327 | 238 | 533 | 4.16e-21 | 97.8 |
| MS.gene041989.t1 | MTR_7g011663 | 29.851 | 268 | 155 | 8 | 60 | 298 | 344 | 607 | 4.79e-21 | 97.8 |
| MS.gene041989.t1 | MTR_7g094970 | 25.899 | 278 | 169 | 8 | 60 | 306 | 206 | 477 | 2.01e-19 | 92.4 |
| MS.gene041989.t1 | MTR_5g030050 | 27.547 | 265 | 158 | 9 | 65 | 305 | 3 | 257 | 4.88e-17 | 82.4 |
| MS.gene041989.t1 | MTR_5g081730 | 43.333 | 90 | 51 | 0 | 155 | 244 | 16 | 105 | 9.87e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041989.t1 | AT5G23960 | 38.899 | 545 | 331 | 2 | 5 | 549 | 3 | 545 | 8.09e-150 | 441 |
| MS.gene041989.t1 | AT5G23960 | 39.051 | 548 | 328 | 5 | 5 | 549 | 3 | 547 | 5.51e-149 | 439 |
| MS.gene041989.t1 | AT3G14490 | 37.729 | 546 | 327 | 7 | 9 | 547 | 60 | 599 | 3.16e-122 | 372 |
| MS.gene041989.t1 | AT1G70080 | 37.591 | 548 | 333 | 7 | 9 | 549 | 66 | 611 | 1.16e-121 | 371 |
| MS.gene041989.t1 | AT3G14520 | 35.436 | 539 | 339 | 5 | 14 | 547 | 68 | 602 | 8.14e-119 | 363 |
| MS.gene041989.t1 | AT1G31950 | 34.137 | 539 | 346 | 5 | 14 | 547 | 70 | 604 | 3.35e-115 | 354 |
| MS.gene041989.t1 | AT3G14540 | 35.807 | 539 | 337 | 5 | 14 | 547 | 65 | 599 | 3.72e-115 | 354 |
| MS.gene041989.t1 | AT1G31950 | 34.074 | 540 | 346 | 6 | 14 | 547 | 70 | 605 | 1.36e-114 | 353 |
| MS.gene041989.t1 | AT3G29410 | 34.502 | 542 | 348 | 5 | 9 | 547 | 64 | 601 | 6.43e-114 | 351 |
| MS.gene041989.t1 | AT3G32030 | 34.750 | 541 | 344 | 6 | 14 | 549 | 68 | 604 | 8.33e-111 | 343 |
| MS.gene041989.t1 | AT1G33750 | 34.312 | 545 | 343 | 6 | 9 | 547 | 66 | 601 | 1.49e-110 | 342 |
| MS.gene041989.t1 | AT5G44630 | 34.539 | 553 | 344 | 9 | 8 | 549 | 12 | 557 | 2.15e-106 | 330 |
| MS.gene041989.t1 | AT3G29410 | 34.269 | 499 | 323 | 3 | 51 | 547 | 1 | 496 | 1.53e-105 | 326 |
| MS.gene041989.t1 | AT4G15870 | 34.694 | 539 | 327 | 11 | 17 | 547 | 75 | 596 | 1.04e-101 | 319 |
| MS.gene041989.t1 | AT4G13300 | 32.961 | 537 | 350 | 7 | 17 | 547 | 20 | 552 | 2.36e-99 | 311 |
| MS.gene041989.t1 | AT3G29110 | 33.211 | 545 | 354 | 7 | 9 | 547 | 55 | 595 | 8.34e-97 | 306 |
| MS.gene041989.t1 | AT2G23230 | 32.724 | 547 | 354 | 9 | 8 | 545 | 55 | 596 | 3.82e-96 | 305 |
| MS.gene041989.t1 | AT3G14540 | 36.242 | 447 | 277 | 4 | 14 | 456 | 65 | 507 | 2.04e-95 | 300 |
| MS.gene041989.t1 | AT4G20210 | 30.292 | 548 | 372 | 6 | 8 | 549 | 57 | 600 | 3.61e-95 | 302 |
| MS.gene041989.t1 | AT2G23230 | 33.150 | 546 | 348 | 11 | 8 | 545 | 55 | 591 | 7.25e-95 | 301 |
| MS.gene041989.t1 | AT4G20200 | 31.193 | 545 | 365 | 6 | 9 | 547 | 62 | 602 | 1.38e-93 | 298 |
| MS.gene041989.t1 | AT4G13280 | 32.523 | 535 | 351 | 7 | 19 | 547 | 22 | 552 | 1.46e-93 | 296 |
| MS.gene041989.t1 | AT1G31950 | 33.917 | 457 | 292 | 6 | 14 | 464 | 70 | 522 | 9.95e-93 | 293 |
| MS.gene041989.t1 | AT4G20230 | 31.716 | 536 | 355 | 8 | 17 | 545 | 70 | 601 | 1.19e-92 | 296 |
| MS.gene041989.t1 | AT4G20230 | 31.716 | 536 | 355 | 8 | 17 | 545 | 82 | 613 | 1.46e-92 | 296 |
| MS.gene041989.t1 | AT4G16730 | 32.563 | 519 | 327 | 8 | 44 | 547 | 27 | 537 | 6.70e-92 | 292 |
| MS.gene041989.t1 | AT3G29190 | 31.608 | 541 | 352 | 8 | 17 | 547 | 67 | 599 | 2.63e-91 | 292 |
| MS.gene041989.t1 | AT3G25830 | 31.607 | 560 | 354 | 11 | 6 | 547 | 44 | 592 | 6.81e-91 | 291 |
| MS.gene041989.t1 | AT3G25820 | 31.607 | 560 | 354 | 11 | 6 | 547 | 44 | 592 | 6.81e-91 | 291 |
| MS.gene041989.t1 | AT4G16730 | 31.515 | 495 | 323 | 5 | 65 | 547 | 1 | 491 | 5.70e-90 | 285 |
| MS.gene041989.t1 | AT4G16740 | 32.496 | 557 | 350 | 11 | 3 | 547 | 20 | 562 | 1.53e-89 | 286 |
| MS.gene041989.t1 | AT2G24210 | 31.227 | 554 | 359 | 11 | 7 | 547 | 44 | 588 | 3.00e-87 | 281 |
| MS.gene041989.t1 | AT3G25810 | 32.099 | 567 | 353 | 14 | 2 | 547 | 40 | 595 | 1.05e-85 | 277 |
| MS.gene041989.t1 | AT4G13280 | 31.402 | 535 | 327 | 9 | 19 | 547 | 22 | 522 | 5.37e-83 | 268 |
| MS.gene041989.t1 | AT1G48800 | 29.853 | 546 | 370 | 9 | 8 | 545 | 62 | 602 | 6.80e-83 | 270 |
| MS.gene041989.t1 | AT1G61680 | 30.417 | 503 | 327 | 6 | 48 | 539 | 79 | 569 | 1.38e-82 | 268 |
| MS.gene041989.t1 | AT1G61680 | 30.219 | 503 | 321 | 7 | 48 | 539 | 79 | 562 | 1.17e-79 | 260 |
| MS.gene041989.t1 | AT1G48820 | 30.275 | 545 | 327 | 11 | 8 | 545 | 62 | 560 | 5.00e-79 | 259 |
| MS.gene041989.t1 | AT1G66020 | 28.752 | 553 | 381 | 7 | 4 | 547 | 48 | 596 | 6.98e-78 | 257 |
| MS.gene041989.t1 | AT4G16740 | 38.682 | 349 | 193 | 8 | 3 | 340 | 20 | 358 | 1.17e-71 | 234 |
| MS.gene041989.t1 | AT3G25820 | 34.447 | 389 | 233 | 7 | 6 | 382 | 44 | 422 | 7.28e-71 | 234 |
| MS.gene041989.t1 | AT5G48110 | 34.795 | 342 | 218 | 5 | 209 | 549 | 2 | 339 | 8.21e-69 | 225 |
| MS.gene041989.t1 | AT4G16740 | 38.253 | 332 | 184 | 8 | 3 | 323 | 20 | 341 | 1.60e-63 | 213 |
| MS.gene041989.t1 | AT4G16740 | 38.253 | 332 | 184 | 8 | 3 | 323 | 20 | 341 | 1.60e-63 | 213 |
| MS.gene041989.t1 | AT3G25820 | 36.061 | 330 | 189 | 7 | 6 | 323 | 44 | 363 | 4.17e-61 | 207 |
| MS.gene041989.t1 | AT3G25820 | 36.061 | 330 | 189 | 7 | 6 | 323 | 44 | 363 | 4.17e-61 | 207 |
| MS.gene041989.t1 | AT1G66020 | 31.025 | 361 | 239 | 6 | 9 | 363 | 56 | 412 | 8.29e-56 | 194 |
| MS.gene041989.t1 | AT1G61120 | 24.708 | 514 | 351 | 16 | 60 | 549 | 283 | 784 | 5.24e-28 | 119 |
| MS.gene041989.t1 | AT1G79460 | 22.437 | 517 | 357 | 17 | 62 | 547 | 274 | 777 | 3.06e-26 | 114 |
| MS.gene041989.t1 | AT4G02780 | 28.938 | 273 | 157 | 8 | 60 | 301 | 329 | 595 | 9.21e-21 | 97.1 |
Find 91 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGAAAACTTACTCATTT+TGG | 0.143539 | 5.4:-60974985 | MS.gene041989:CDS |
| GCTCTCTTGCTGTGCTATTT+AGG | 0.182043 | 5.4:-60976103 | MS.gene041989:CDS |
| CATAAGAATTATGTTGAAAA+TGG | 0.214259 | 5.4:-60976155 | MS.gene041989:CDS |
| GTTAATGCCGCTATTGTTAT+TGG | 0.246366 | 5.4:-60973452 | MS.gene041989:CDS |
| GGTTCGAGGAGAGGATATTT+TGG | 0.273538 | 5.4:-60975174 | MS.gene041989:CDS |
| AGAACATATGTCCTCATTCT+TGG | 0.289423 | 5.4:-60973291 | MS.gene041989:CDS |
| CGAAGGATCCTCTTCGTATA+TGG | 0.295452 | 5.4:+60975010 | None:intergenic |
| AATTGATTCAATATGTCGTT+TGG | 0.310092 | 5.4:-60976228 | MS.gene041989:CDS |
| TATTTCTTCGTAAAGATCTA+AGG | 0.313436 | 5.4:+60974266 | None:intergenic |
| GGATGGTGGAAGGTAGCTTT+TGG | 0.321374 | 5.4:-60974726 | MS.gene041989:CDS |
| TCATAAGAACTTGCCTAGAT+TGG | 0.330201 | 5.4:-60975051 | MS.gene041989:CDS |
| TTTGAGCCTCAATATTCTAT+TGG | 0.331535 | 5.4:-60974688 | MS.gene041989:CDS |
| TATTGTTATTGGCAGGATAA+TGG | 0.339507 | 5.4:-60973441 | MS.gene041989:CDS |
| CTGATTACAAACCTAGCGTT+TGG | 0.341269 | 5.4:-60976825 | MS.gene041989:CDS |
| TCGATATGCTTCAGAATCTA+TGG | 0.349017 | 5.4:-60976788 | MS.gene041989:intron |
| ATTTCTATGCAAGTCAGATT+TGG | 0.350759 | 5.4:+60976852 | None:intergenic |
| TAGAGAAACTTCATATAATC+TGG | 0.367058 | 5.4:+60974297 | None:intergenic |
| TTGTAGATGGTGGAAGGAAT+TGG | 0.385282 | 5.4:-60974782 | MS.gene041989:intron |
| ATTGAATCCCTTACTTGAAA+AGG | 0.388086 | 5.4:+60974910 | None:intergenic |
| TAAAGCTTTGCTTGTAGATC+CGG | 0.393585 | 5.4:-60973045 | MS.gene041989:CDS |
| GTCTCCCATACCAATAAAAC+TGG | 0.399190 | 5.4:+60973523 | None:intergenic |
| TGCTTGGAAAGATATGAATA+AGG | 0.403555 | 5.4:-60973198 | MS.gene041989:CDS |
| TAGCTTCGTGCCTCCAATCT+AGG | 0.403784 | 5.4:+60975038 | None:intergenic |
| TGATTACAAACCTAGCGTTT+GGG | 0.410531 | 5.4:-60976824 | MS.gene041989:CDS |
| ATATGAATAAGGAATGTCTT+AGG | 0.416799 | 5.4:-60973187 | MS.gene041989:CDS |
| ATTGATTCAATATGTCGTTT+GGG | 0.419389 | 5.4:-60976227 | MS.gene041989:CDS |
| ATTCATATCTTTCCAAGCAT+TGG | 0.425457 | 5.4:+60973202 | None:intergenic |
| CTTATATGACTGAAGCTAGA+TGG | 0.426093 | 5.4:-60973628 | MS.gene041989:CDS |
| TACAAGTCAAACATAGCTTA+AGG | 0.428728 | 5.4:-60975082 | MS.gene041989:CDS |
| AGCATACATCAAAAGGAATT+CGG | 0.429626 | 5.4:-60974936 | MS.gene041989:CDS |
| AGAATCATTGTTGATGTTGA+GGG | 0.433181 | 5.4:-60975230 | MS.gene041989:CDS |
| CAGGTGGGATATTAGCTGCT+TGG | 0.434230 | 5.4:-60974328 | MS.gene041989:CDS |
| GATGATGCTTATGATGCATA+TGG | 0.449013 | 5.4:-60974622 | MS.gene041989:CDS |
| GCTACAAAGCATACATCAAA+AGG | 0.461473 | 5.4:-60974943 | MS.gene041989:CDS |
| TGAAGAAGTATAATGTCTCT+AGG | 0.468938 | 5.4:-60973259 | MS.gene041989:CDS |
| TGAATGTACTCTTCTAATGT+TGG | 0.480305 | 5.4:+60973587 | None:intergenic |
| TAAGAACTTGCCTAGATTGG+AGG | 0.480355 | 5.4:-60975048 | MS.gene041989:CDS |
| GCGAGGATGGTTCGATTCGT+TGG | 0.480671 | 5.4:+60975109 | None:intergenic |
| GAAAGAGGATTGCCAATGCT+TGG | 0.482714 | 5.4:-60973214 | MS.gene041989:CDS |
| ATGCCGCTATTGTTATTGGC+AGG | 0.487047 | 5.4:-60973448 | MS.gene041989:CDS |
| AAGAATCATTGTTGATGTTG+AGG | 0.489802 | 5.4:-60975231 | MS.gene041989:CDS |
| GGCTTTCACTACCACTCACC+TGG | 0.492597 | 5.4:-60975141 | MS.gene041989:CDS |
| TTTCTTCCAATAGAATATTG+AGG | 0.497314 | 5.4:+60974682 | None:intergenic |
| TTTAAAATACGTGTAAGAAA+AGG | 0.501278 | 5.4:+60973146 | None:intergenic |
| TGGTCTTTGTAGATGGTGGA+AGG | 0.502168 | 5.4:-60974788 | MS.gene041989:intron |
| AACTACCGTTTGCAAGAGAT+AGG | 0.502401 | 5.4:-60974747 | MS.gene041989:CDS |
| CTGTGCTATTTAGGTTGTTG+AGG | 0.502767 | 5.4:-60976094 | MS.gene041989:CDS |
| AGATGTATTCAACAAGTTCA+AGG | 0.504545 | 5.4:-60975276 | MS.gene041989:CDS |
| CCACAGAGGAGATCATCAAA+TGG | 0.505847 | 5.4:-60973496 | MS.gene041989:CDS |
| GAGCATGAAATGCAGAAAAG+TGG | 0.508998 | 5.4:-60974243 | MS.gene041989:CDS |
| AAAGGCATTGGAATTTCCGT+TGG | 0.525158 | 5.4:+60973164 | None:intergenic |
| CACAGAGGAGATCATCAAAT+GGG | 0.528594 | 5.4:-60973495 | MS.gene041989:CDS |
| CATATAGCATTCCAAGAATG+AGG | 0.542840 | 5.4:+60973280 | None:intergenic |
| CAATTCAAGAAGGTAGAAAG+AGG | 0.552196 | 5.4:-60973229 | MS.gene041989:CDS |
| GAAGAAGTATAATGTCTCTA+GGG | 0.552743 | 5.4:-60973258 | MS.gene041989:CDS |
| AAATAATCTCCCCAAACGCT+AGG | 0.554023 | 5.4:+60976814 | None:intergenic |
| TTTGCTTGTAGATCCGGTGG+TGG | 0.557078 | 5.4:-60973039 | MS.gene041989:CDS |
| ATTCGTTGGCAACATAGTCC+AGG | 0.558787 | 5.4:+60975123 | None:intergenic |
| AACCACATGTTTCTGTTGAT+AGG | 0.560262 | 5.4:+60973564 | None:intergenic |
| TGCATCATAAGCATCATCAA+TGG | 0.560407 | 5.4:+60974627 | None:intergenic |
| ACCATCCTATCTCTTGCAAA+CGG | 0.560578 | 5.4:+60974742 | None:intergenic |
| GTATGAAGCTACACATCTCA+TGG | 0.572870 | 5.4:-60975195 | MS.gene041989:CDS |
| GCAAGAGATAGGATGGTGGA+AGG | 0.575096 | 5.4:-60974736 | MS.gene041989:CDS |
| TTTAGGTTGTTGAGGCAACA+AGG | 0.580324 | 5.4:-60976086 | MS.gene041989:CDS |
| ATACGTGTAAGAAAAGGCAT+TGG | 0.580790 | 5.4:+60973152 | None:intergenic |
| GCTACACATCTCATGGTTCG+AGG | 0.582249 | 5.4:-60975188 | MS.gene041989:CDS |
| AGTCAAACATAGCTTAAGGC+AGG | 0.582484 | 5.4:-60975078 | MS.gene041989:CDS |
| TGACTTGTATTGCGCGAGGA+TGG | 0.583638 | 5.4:+60975096 | None:intergenic |
| ACATCTCATGGTTCGAGGAG+AGG | 0.586076 | 5.4:-60975183 | MS.gene041989:CDS |
| ACCGTTTGCAAGAGATAGGA+TGG | 0.587976 | 5.4:-60974743 | MS.gene041989:CDS |
| AGCTTTGCTTGTAGATCCGG+TGG | 0.596970 | 5.4:-60973042 | MS.gene041989:CDS |
| ATAGCACAGCAAGAGAGCAA+AGG | 0.599003 | 5.4:+60976108 | None:intergenic |
| GATTACAAACCTAGCGTTTG+GGG | 0.603119 | 5.4:-60976823 | MS.gene041989:CDS |
| TAAGGAATGTCTTAGGCCAA+CGG | 0.603804 | 5.4:-60973180 | MS.gene041989:CDS |
| AACAAGTTCAAGGATGAGCA+AGG | 0.607713 | 5.4:-60975266 | MS.gene041989:CDS |
| AGGGAAGCTTCAATTCAAGA+AGG | 0.608492 | 5.4:-60973239 | MS.gene041989:CDS |
| GATAACTACACGAATCCTGA+AGG | 0.616579 | 5.4:-60973086 | MS.gene041989:CDS |
| GTTAATGCTCAAACCACCAC+CGG | 0.618050 | 5.4:+60973026 | None:intergenic |
| CTACATTTCCATATACGAAG+AGG | 0.619882 | 5.4:-60975018 | MS.gene041989:CDS |
| TAGATTCTGAAGCATATCGA+AGG | 0.635933 | 5.4:+60976791 | None:intergenic |
| GGCAACATAGTCCAGGTGAG+TGG | 0.642516 | 5.4:+60975130 | None:intergenic |
| CCATTTGATGATCTCCTCTG+TGG | 0.644970 | 5.4:+60973496 | None:intergenic |
| GAATCATTGTTGATGTTGAG+GGG | 0.658359 | 5.4:-60975229 | MS.gene041989:CDS |
| ACACATCAATAACACGTGAG+AGG | 0.662071 | 5.4:+60973123 | None:intergenic |
| TATCCTGCCAATAACAATAG+CGG | 0.664157 | 5.4:+60973445 | None:intergenic |
| GGATGATATTGCGTCCAATG+AGG | 0.668064 | 5.4:-60973420 | MS.gene041989:intron |
| GTGAGTGGTAGTGAAAGCCA+AGG | 0.686505 | 5.4:+60975145 | None:intergenic |
| CACCTATCAACAGAAACATG+TGG | 0.690608 | 5.4:-60973566 | MS.gene041989:CDS |
| TGTTTGACTTGTATTGCGCG+AGG | 0.696523 | 5.4:+60975092 | None:intergenic |
| GTTTGCAAGAGATAGGATGG+TGG | 0.725981 | 5.4:-60974740 | MS.gene041989:CDS |
| TATGGGAGACATAACCACAG+AGG | 0.810504 | 5.4:-60973510 | MS.gene041989:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAAATTAAAATT+TGG | + | chr5.4:60975779-60975798 | None:intergenic | 0.0% |
| !! | TTATTATTATTATTATTATT+TGG | - | chr5.4:60975073-60975092 | MS.gene041989:CDS | 0.0% |
| !!! | TTTTTTTTTTTTTTTTATAT+AGG | + | chr5.4:60976112-60976131 | None:intergenic | 0.0% |
| !! | AAAGTTAAAAAAAAAATTGA+AGG | - | chr5.4:60975966-60975985 | MS.gene041989:intron | 10.0% |
| !!! | AAGTAATTTTCTTTATATTT+TGG | + | chr5.4:60976200-60976219 | None:intergenic | 10.0% |
| !!! | AATTAGTATTTTATTAGAAA+TGG | - | chr5.4:60974249-60974268 | MS.gene041989:CDS | 10.0% |
| !! | AACATTTAGAGATTAATATA+TGG | - | chr5.4:60973134-60973153 | MS.gene041989:CDS | 15.0% |
| !! | ACTAATCAAAAATAAATAAG+AGG | - | chr5.4:60974063-60974082 | MS.gene041989:intron | 15.0% |
| !! | ATTGAACCATAAATATATAA+AGG | - | chr5.4:60973223-60973242 | MS.gene041989:CDS | 15.0% |
| !! | CAAATTATTAACAAATCTAA+AGG | - | chr5.4:60974133-60974152 | MS.gene041989:intron | 15.0% |
| !! | CATAAGTTAAGAATTAAAAA+AGG | + | chr5.4:60976041-60976060 | None:intergenic | 15.0% |
| !! | TAAATTGCAATTTCTATAAT+TGG | - | chr5.4:60974022-60974041 | MS.gene041989:intron | 15.0% |
| !! | TTAATAGTAGAAATAATCTA+GGG | - | chr5.4:60974371-60974390 | MS.gene041989:intron | 15.0% |
| !! | TTTAATAGTAGAAATAATCT+AGG | - | chr5.4:60974370-60974389 | MS.gene041989:intron | 15.0% |
| !!! | AAATACTATATTTCTACATT+TGG | + | chr5.4:60975923-60975942 | None:intergenic | 15.0% |
| !!! | AATTAGTTCTTATTAATTGT+TGG | + | chr5.4:60973288-60973307 | None:intergenic | 15.0% |
| !!! | ACTTCTGAAAAATATATTAA+AGG | - | chr5.4:60974170-60974189 | MS.gene041989:intron | 15.0% |
| !!! | ATCAACTTTTTACTTATATT+TGG | - | chr5.4:60973411-60973430 | MS.gene041989:intron | 15.0% |
| !!! | ATCTAAAGGTATATATAATA+TGG | - | chr5.4:60974147-60974166 | MS.gene041989:intron | 15.0% |
| !!! | ATTTTATATTTATACCTCAT+TGG | + | chr5.4:60976490-60976509 | None:intergenic | 15.0% |
| !!! | CATTTAAATTTTAATGAAAG+TGG | - | chr5.4:60975538-60975557 | MS.gene041989:intron | 15.0% |
| !!! | CTTATAATTATATTGCATTT+TGG | - | chr5.4:60976217-60976236 | MS.gene041989:CDS | 15.0% |
| !!! | CTTATTTGTTAGAATTTAAA+AGG | - | chr5.4:60975807-60975826 | MS.gene041989:intron | 15.0% |
| !! | CAAATTTAATAAAAATGGCA+AGG | + | chr5.4:60974201-60974220 | None:intergenic | 20.0% |
| !! | CATAAGAATTATGTTGAAAA+TGG | - | chr5.4:60973738-60973757 | MS.gene041989:intron | 20.0% |
| !! | CATTAAGAAAATATAGATCA+AGG | + | chr5.4:60974325-60974344 | None:intergenic | 20.0% |
| !! | CATTCAATTAATGATATATG+TGG | - | chr5.4:60975418-60975437 | MS.gene041989:intron | 20.0% |
| !! | GTCTTACCTTTATATATTTA+TGG | + | chr5.4:60973232-60973251 | None:intergenic | 20.0% |
| !! | TGGTGATAATAAATAAATTG+AGG | + | chr5.4:60973501-60973520 | None:intergenic | 20.0% |
| !! | TTCAAGAAAAATACATACAT+AGG | + | chr5.4:60974448-60974467 | None:intergenic | 20.0% |
| !!! | AATGTTTAGTAGTTTTTGAA+TGG | + | chr5.4:60976154-60976173 | None:intergenic | 20.0% |
| !!! | ATAATTATATTGCATTTTGG+TGG | - | chr5.4:60976220-60976239 | MS.gene041989:CDS | 20.0% |
| !!! | ATTTTCTTAATGCATACATA+CGG | - | chr5.4:60974333-60974352 | MS.gene041989:intron | 20.0% |
| !!! | ATTTTTTTTCCTAGTTACAA+AGG | + | chr5.4:60975021-60975040 | None:intergenic | 20.0% |
| !!! | GTGTTTTTTTTTAGTAAACA+AGG | + | chr5.4:60974596-60974615 | None:intergenic | 20.0% |
| !!! | TAATGAAAACTTACTCATTT+TGG | - | chr5.4:60974908-60974927 | MS.gene041989:intron | 20.0% |
| !!! | TGAATTAGAACTTTTTACTA+AGG | - | chr5.4:60975303-60975322 | MS.gene041989:intron | 20.0% |
| !!! | TGCATTTTTATAGTAGTTTA+GGG | + | chr5.4:60975687-60975706 | None:intergenic | 20.0% |
| !!! | TTGAATGGATTTAATGTTAA+GGG | + | chr5.4:60976139-60976158 | None:intergenic | 20.0% |
| !!! | TTTAAAATACGTGTAAGAAA+AGG | + | chr5.4:60976750-60976769 | None:intergenic | 20.0% |
| !!! | TTTGAATGGATTTAATGTTA+AGG | + | chr5.4:60976140-60976159 | None:intergenic | 20.0% |
| ! | AAACACTAAAAAACAATGTG+AGG | - | chr5.4:60973595-60973614 | MS.gene041989:CDS | 25.0% |
| ! | AACACTAAAAAACAATGTGA+GGG | - | chr5.4:60973596-60973615 | MS.gene041989:CDS | 25.0% |
| ! | AACATGACTAAATTTGTAAG+TGG | - | chr5.4:60973311-60973330 | MS.gene041989:intron | 25.0% |
| ! | ACAATTCTTCAAAAGAAGTA+AGG | + | chr5.4:60973254-60973273 | None:intergenic | 25.0% |
| ! | ACTACTATAAAAATGCAGTA+TGG | - | chr5.4:60975690-60975709 | MS.gene041989:intron | 25.0% |
| ! | ACTGAACTTAGAGTAAAAAA+AGG | + | chr5.4:60976087-60976106 | None:intergenic | 25.0% |
| ! | ATATAAATATATACACCCTC+CGG | - | chr5.4:60975361-60975380 | MS.gene041989:intron | 25.0% |
| ! | ATATGAATAAGGAATGTCTT+AGG | - | chr5.4:60976706-60976725 | MS.gene041989:intron | 25.0% |
| ! | GGTATCAAATGAAACAAAAA+TGG | - | chr5.4:60976419-60976438 | MS.gene041989:intron | 25.0% |
| ! | TACCCTAAAATTATTTCCTA+TGG | + | chr5.4:60973993-60974012 | None:intergenic | 25.0% |
| ! | TAGAGAAACTTCATATAATC+TGG | + | chr5.4:60975599-60975618 | None:intergenic | 25.0% |
| ! | TATTTCTTCGTAAAGATCTA+AGG | + | chr5.4:60975630-60975649 | None:intergenic | 25.0% |
| ! | TTTCTTCCAATAGAATATTG+AGG | + | chr5.4:60975214-60975233 | None:intergenic | 25.0% |
| !! | AATTGATTCAATATGTCGTT+TGG | - | chr5.4:60973665-60973684 | MS.gene041989:intron | 25.0% |
| !! | ATTGATTCAATATGTCGTTT+GGG | - | chr5.4:60973666-60973685 | MS.gene041989:intron | 25.0% |
| !! | ATTTATTATCACCACTCTTT+TGG | - | chr5.4:60973507-60973526 | MS.gene041989:CDS | 25.0% |
| !! | ATTTTTGTCTTTTGTCATGA+GGG | + | chr5.4:60974490-60974509 | None:intergenic | 25.0% |
| !! | CACCATAGGAAATAATTTTA+GGG | - | chr5.4:60973988-60974007 | MS.gene041989:intron | 25.0% |
| !! | CTGCATTTTTATAGTAGTTT+AGG | + | chr5.4:60975688-60975707 | None:intergenic | 25.0% |
| !! | TATTATTTGGTCTTTGTAGA+TGG | - | chr5.4:60975098-60975117 | MS.gene041989:CDS | 25.0% |
| !! | TCACCATAGGAAATAATTTT+AGG | - | chr5.4:60973987-60974006 | MS.gene041989:intron | 25.0% |
| !! | TTTTAATGAAAGTGGTTTTC+AGG | - | chr5.4:60975546-60975565 | MS.gene041989:intron | 25.0% |
| !! | TTTTTACTAAGGCAATTGAA+AGG | - | chr5.4:60975314-60975333 | MS.gene041989:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | - | chr5.4:60975492-60975511 | MS.gene041989:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr5.4:60975511-60975492 | None:intergenic | 25.0% |
| !!! | AAATAAGTTGATGACATACT+TGG | + | chr5.4:60973846-60973865 | None:intergenic | 25.0% |
| !!! | AATTAAGTGCACTTTTTCTA+AGG | + | chr5.4:60973649-60973668 | None:intergenic | 25.0% |
| !!! | ATTAAGTGCACTTTTTCTAA+GGG | + | chr5.4:60973648-60973667 | None:intergenic | 25.0% |
| !!! | TATTTTAAAGCTTCTACGTA+CGG | - | chr5.4:60975739-60975758 | MS.gene041989:intron | 25.0% |
| !!! | TATTTTTGTCTTTTGTCATG+AGG | + | chr5.4:60974491-60974510 | None:intergenic | 25.0% |
| !!! | TTGATATGTACCAGTTTTAT+TGG | - | chr5.4:60976360-60976379 | MS.gene041989:intron | 25.0% |
| !!! | TTTTGAAAATGAGATTGAAG+AGG | - | chr5.4:60973701-60973720 | MS.gene041989:intron | 25.0% |
| AAGAATCATTGTTGATGTTG+AGG | - | chr5.4:60974662-60974681 | MS.gene041989:CDS | 30.0% | |
| ACATAAGATTACTTGAAGAC+TGG | + | chr5.4:60973888-60973907 | None:intergenic | 30.0% | |
| AGAATCATTGTTGATGTTGA+GGG | - | chr5.4:60974663-60974682 | MS.gene041989:CDS | 30.0% | |
| AGATGTATTCAACAAGTTCA+AGG | - | chr5.4:60974617-60974636 | MS.gene041989:CDS | 30.0% | |
| AGCATACATCAAAAGGAATT+CGG | - | chr5.4:60974957-60974976 | MS.gene041989:CDS | 30.0% | |
| ATCTAATCAAATCTCACCAT+AGG | - | chr5.4:60973974-60973993 | MS.gene041989:intron | 30.0% | |
| ATTCATATCTTTCCAAGCAT+TGG | + | chr5.4:60976694-60976713 | None:intergenic | 30.0% | |
| ATTGAATCCCTTACTTGAAA+AGG | + | chr5.4:60974986-60975005 | None:intergenic | 30.0% | |
| ATTTCTATGCAAGTCAGATT+TGG | + | chr5.4:60973044-60973063 | None:intergenic | 30.0% | |
| TAAAGCAAGAACGTAATGTT+TGG | + | chr5.4:60974533-60974552 | None:intergenic | 30.0% | |
| TACAAGTCAAACATAGCTTA+AGG | - | chr5.4:60974811-60974830 | MS.gene041989:intron | 30.0% | |
| TGAATGTACTCTTCTAATGT+TGG | + | chr5.4:60976309-60976328 | None:intergenic | 30.0% | |
| TGCTTGGAAAGATATGAATA+AGG | - | chr5.4:60976695-60976714 | MS.gene041989:intron | 30.0% | |
| TTTGAGCCTCAATATTCTAT+TGG | - | chr5.4:60975205-60975224 | MS.gene041989:CDS | 30.0% | |
| ! | AATGTTTTCATTTCTCCTTC+AGG | + | chr5.4:60976825-60976844 | None:intergenic | 30.0% |
| ! | AGTAAGTTTTCATTATGCGA+AGG | + | chr5.4:60974903-60974922 | None:intergenic | 30.0% |
| ! | GAAGAAGTATAATGTCTCTA+GGG | - | chr5.4:60976635-60976654 | MS.gene041989:intron | 30.0% |
| ! | TATTGTTATTGGCAGGATAA+TGG | - | chr5.4:60976452-60976471 | MS.gene041989:intron | 30.0% |
| ! | TCATGCTAACTTGTGTTATA+AGG | + | chr5.4:60976064-60976083 | None:intergenic | 30.0% |
| ! | TGAAGAAGTATAATGTCTCT+AGG | - | chr5.4:60976634-60976653 | MS.gene041989:intron | 30.0% |
| !!! | ATGTACCAGTTTTATTGGTA+TGG | - | chr5.4:60976365-60976384 | MS.gene041989:intron | 30.0% |
| !!! | TGTACCAGTTTTATTGGTAT+GGG | - | chr5.4:60976366-60976385 | MS.gene041989:intron | 30.0% |
| ACTTACACTCCTTTGTAACT+AGG | - | chr5.4:60975009-60975028 | MS.gene041989:CDS | 35.0% | |
| AGAACATATGTCCTCATTCT+TGG | - | chr5.4:60976602-60976621 | MS.gene041989:intron | 35.0% | |
| ATATACACATATACACCCTC+CGG | + | chr5.4:60975514-60975533 | None:intergenic | 35.0% | |
| CAATTCAAGAAGGTAGAAAG+AGG | - | chr5.4:60976664-60976683 | MS.gene041989:intron | 35.0% | |
| CATATAGCATTCCAAGAATG+AGG | + | chr5.4:60976616-60976635 | None:intergenic | 35.0% | |
| CTACATTTCCATATACGAAG+AGG | - | chr5.4:60974875-60974894 | MS.gene041989:intron | 35.0% | |
| CTTATATGACTGAAGCTAGA+TGG | - | chr5.4:60976265-60976284 | MS.gene041989:CDS | 35.0% | |
| GAATCATTGTTGATGTTGAG+GGG | - | chr5.4:60974664-60974683 | MS.gene041989:CDS | 35.0% | |
| GATGATGCTTATGATGCATA+TGG | - | chr5.4:60975271-60975290 | MS.gene041989:CDS | 35.0% | |
| GCTACAAAGCATACATCAAA+AGG | - | chr5.4:60974950-60974969 | MS.gene041989:CDS | 35.0% | |
| GTTAATGCCGCTATTGTTAT+TGG | - | chr5.4:60976441-60976460 | MS.gene041989:intron | 35.0% | |
| TAAAGCTTTGCTTGTAGATC+CGG | - | chr5.4:60976848-60976867 | MS.gene041989:CDS | 35.0% | |
| TAACCAAGTAACCAAAAGAG+TGG | + | chr5.4:60973521-60973540 | None:intergenic | 35.0% | |
| TATCCTGCCAATAACAATAG+CGG | + | chr5.4:60976451-60976470 | None:intergenic | 35.0% | |
| TCATAAGAACTTGCCTAGAT+TGG | - | chr5.4:60974842-60974861 | MS.gene041989:intron | 35.0% | |
| TCGATATGCTTCAGAATCTA+TGG | - | chr5.4:60973105-60973124 | MS.gene041989:CDS | 35.0% | |
| TCTTGAACGAAGACCATAAT+TGG | - | chr5.4:60974461-60974480 | MS.gene041989:intron | 35.0% | |
| TGATTACAAACCTAGCGTTT+GGG | - | chr5.4:60973069-60973088 | MS.gene041989:CDS | 35.0% | |
| TGCATCATAAGCATCATCAA+TGG | + | chr5.4:60975269-60975288 | None:intergenic | 35.0% | |
| TTTACCTTTGCAACTTTGAG+AGG | - | chr5.4:60974278-60974297 | MS.gene041989:CDS | 35.0% | |
| ! | AACCACATGTTTCTGTTGAT+AGG | + | chr5.4:60976332-60976351 | None:intergenic | 35.0% |
| ! | ATACGTGTAAGAAAAGGCAT+TGG | + | chr5.4:60976744-60976763 | None:intergenic | 35.0% |
| ! | TATTTGGTCTTTGTAGATGG+TGG | - | chr5.4:60975101-60975120 | MS.gene041989:CDS | 35.0% |
| !! | TAATGAAAGTGGTTTTCAGG+TGG | - | chr5.4:60975549-60975568 | MS.gene041989:intron | 35.0% |
| !! | TAGATTCTGAAGCATATCGA+AGG | + | chr5.4:60973105-60973124 | None:intergenic | 35.0% |
| !!! | AATGAAAGTGGTTTTCAGGT+GGG | - | chr5.4:60975550-60975569 | MS.gene041989:intron | 35.0% |
| !!! | TCGGTAACCTTTTCAAGTAA+GGG | - | chr5.4:60974976-60974995 | MS.gene041989:CDS | 35.0% |
| !!! | TTCGGTAACCTTTTCAAGTA+AGG | - | chr5.4:60974975-60974994 | MS.gene041989:CDS | 35.0% |
| AAATAATCTCCCCAAACGCT+AGG | + | chr5.4:60973082-60973101 | None:intergenic | 40.0% | |
| AACAAGTTCAAGGATGAGCA+AGG | - | chr5.4:60974627-60974646 | MS.gene041989:CDS | 40.0% | |
| AACTACCGTTTGCAAGAGAT+AGG | - | chr5.4:60975146-60975165 | MS.gene041989:CDS | 40.0% | |
| ACACATCAATAACACGTGAG+AGG | + | chr5.4:60976773-60976792 | None:intergenic | 40.0% | |
| ACCATCCTATCTCTTGCAAA+CGG | + | chr5.4:60975154-60975173 | None:intergenic | 40.0% | |
| AGGGAAGCTTCAATTCAAGA+AGG | - | chr5.4:60976654-60976673 | MS.gene041989:intron | 40.0% | |
| AGTCAAACATAGCTTAAGGC+AGG | - | chr5.4:60974815-60974834 | MS.gene041989:intron | 40.0% | |
| ATGGTTCAATGTTGCATGCA+TGG | + | chr5.4:60973213-60973232 | None:intergenic | 40.0% | |
| CACAGAGGAGATCATCAAAT+GGG | - | chr5.4:60976398-60976417 | MS.gene041989:intron | 40.0% | |
| CACCTATCAACAGAAACATG+TGG | - | chr5.4:60976327-60976346 | MS.gene041989:CDS | 40.0% | |
| CTCTTTGTTCAACACTTTGC+AGG | - | chr5.4:60973542-60973561 | MS.gene041989:CDS | 40.0% | |
| CTGATTACAAACCTAGCGTT+TGG | - | chr5.4:60973068-60973087 | MS.gene041989:CDS | 40.0% | |
| GAGCATGAAATGCAGAAAAG+TGG | - | chr5.4:60975650-60975669 | MS.gene041989:intron | 40.0% | |
| GATAACTACACGAATCCTGA+AGG | - | chr5.4:60976807-60976826 | MS.gene041989:CDS | 40.0% | |
| GATTACAAACCTAGCGTTTG+GGG | - | chr5.4:60973070-60973089 | MS.gene041989:CDS | 40.0% | |
| GTATGAAGCTACACATCTCA+TGG | - | chr5.4:60974698-60974717 | MS.gene041989:CDS | 40.0% | |
| GTCTCCCATACCAATAAAAC+TGG | + | chr5.4:60976373-60976392 | None:intergenic | 40.0% | |
| TAAGAACTTGCCTAGATTGG+AGG | - | chr5.4:60974845-60974864 | MS.gene041989:intron | 40.0% | |
| TAAGGAATGTCTTAGGCCAA+CGG | - | chr5.4:60976713-60976732 | MS.gene041989:intron | 40.0% | |
| TGAACCTCTCAAAGTTGCAA+AGG | + | chr5.4:60974285-60974304 | None:intergenic | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | - | chr5.4:60975496-60975515 | MS.gene041989:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr5.4:60975515-60975496 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | - | chr5.4:60975495-60975514 | MS.gene041989:intron | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr5.4:60975514-60975495 | None:intergenic | 40.0% | |
| ! | TTTGTCTTTTGTCATGAGGG+AGG | + | chr5.4:60974487-60974506 | None:intergenic | 40.0% |
| !! | AAAGGCATTGGAATTTCCGT+TGG | + | chr5.4:60976732-60976751 | None:intergenic | 40.0% |
| !! | AGGAGAGGATATTTTGGAAG+AGG | - | chr5.4:60974725-60974744 | MS.gene041989:CDS | 40.0% |
| !! | CTGTGCTATTTAGGTTGTTG+AGG | - | chr5.4:60973799-60973818 | MS.gene041989:intron | 40.0% |
| !! | TCACCACTCTTTTGGTTACT+TGG | - | chr5.4:60973515-60973534 | MS.gene041989:CDS | 40.0% |
| !! | TCGTTGTTCAAGTTGTGTTG+AGG | + | chr5.4:60973470-60973489 | None:intergenic | 40.0% |
| !! | TTGTAGATGGTGGAAGGAAT+TGG | - | chr5.4:60975111-60975130 | MS.gene041989:CDS | 40.0% |
| !! | TTTAGGTTGTTGAGGCAACA+AGG | - | chr5.4:60973807-60973826 | MS.gene041989:intron | 40.0% |
| ACCGTTTGCAAGAGATAGGA+TGG | - | chr5.4:60975150-60975169 | MS.gene041989:CDS | 45.0% | |
| ATAGCACAGCAAGAGAGCAA+AGG | + | chr5.4:60973788-60973807 | None:intergenic | 45.0% | |
| ATTCGTTGGCAACATAGTCC+AGG | + | chr5.4:60974773-60974792 | None:intergenic | 45.0% | |
| CCACAGAGGAGATCATCAAA+TGG | - | chr5.4:60976397-60976416 | MS.gene041989:intron | 45.0% | |
| CGAAGGATCCTCTTCGTATA+TGG | + | chr5.4:60974886-60974905 | None:intergenic | 45.0% | |
| GAAAGAGGATTGCCAATGCT+TGG | - | chr5.4:60976679-60976698 | MS.gene041989:intron | 45.0% | |
| GGATGATATTGCGTCCAATG+AGG | - | chr5.4:60976473-60976492 | MS.gene041989:intron | 45.0% | |
| GTTTGCAAGAGATAGGATGG+TGG | - | chr5.4:60975153-60975172 | MS.gene041989:CDS | 45.0% | |
| TATGGGAGACATAACCACAG+AGG | - | chr5.4:60976383-60976402 | MS.gene041989:intron | 45.0% | |
| ! | AAGGTAGCTTTTGGGCTATG+GGG | - | chr5.4:60975176-60975195 | MS.gene041989:CDS | 45.0% |
| ! | ATGCCGCTATTGTTATTGGC+AGG | - | chr5.4:60976445-60976464 | MS.gene041989:intron | 45.0% |
| ! | CCATTTGATGATCTCCTCTG+TGG | + | chr5.4:60976400-60976419 | None:intergenic | 45.0% |
| ! | GAAGGTAGCTTTTGGGCTAT+GGG | - | chr5.4:60975175-60975194 | MS.gene041989:CDS | 45.0% |
| ! | GGTTCGAGGAGAGGATATTT+TGG | - | chr5.4:60974719-60974738 | MS.gene041989:CDS | 45.0% |
| !! | GCTCTCTTGCTGTGCTATTT+AGG | - | chr5.4:60973790-60973809 | MS.gene041989:intron | 45.0% |
| !! | GGATATTTTGGAAGAGGCCT+TGG | - | chr5.4:60974731-60974750 | MS.gene041989:CDS | 45.0% |
| !! | TCTAGGGAAGCTTTGAGTAG+AGG | - | chr5.4:60974387-60974406 | MS.gene041989:intron | 45.0% |
| !! | TGGTCTTTGTAGATGGTGGA+AGG | - | chr5.4:60975105-60975124 | MS.gene041989:CDS | 45.0% |
| !! | TGTTTGACTTGTATTGCGCG+AGG | + | chr5.4:60974804-60974823 | None:intergenic | 45.0% |
| !!! | GATGGTGGAAGGTAGCTTTT+GGG | - | chr5.4:60975168-60975187 | MS.gene041989:CDS | 45.0% |
| !! | TTATTCAAATTTAATAAAAA+TGG | + | chr5.4:60974206-60974225 | None:intergenic | 5.0% |
| !!! | CAAATTAAATTTTAATTTAA+TGG | - | chr5.4:60973340-60973359 | MS.gene041989:intron | 5.0% |
| ACATCTCATGGTTCGAGGAG+AGG | - | chr5.4:60974710-60974729 | MS.gene041989:CDS | 50.0% | |
| AGCTTTGCTTGTAGATCCGG+TGG | - | chr5.4:60976851-60976870 | MS.gene041989:CDS | 50.0% | |
| CAGGTGGGATATTAGCTGCT+TGG | - | chr5.4:60975565-60975584 | MS.gene041989:intron | 50.0% | |
| GCTACACATCTCATGGTTCG+AGG | - | chr5.4:60974705-60974724 | MS.gene041989:CDS | 50.0% | |
| GTCATGAGGGAGGCCAATTA+TGG | + | chr5.4:60974477-60974496 | None:intergenic | 50.0% | |
| TAGCTTCGTGCCTCCAATCT+AGG | + | chr5.4:60974858-60974877 | None:intergenic | 50.0% | |
| TTTGCTTGTAGATCCGGTGG+TGG | - | chr5.4:60976854-60976873 | MS.gene041989:CDS | 50.0% | |
| ! | GGAAGGTAGCTTTTGGGCTA+TGG | - | chr5.4:60975174-60975193 | MS.gene041989:CDS | 50.0% |
| ! | GTGAGTGGTAGTGAAAGCCA+AGG | + | chr5.4:60974751-60974770 | None:intergenic | 50.0% |
| ! | TGACTTGTATTGCGCGAGGA+TGG | + | chr5.4:60974800-60974819 | None:intergenic | 50.0% |
| !! | GCAAGAGATAGGATGGTGGA+AGG | - | chr5.4:60975157-60975176 | MS.gene041989:CDS | 50.0% |
| !!! | GGATGGTGGAAGGTAGCTTT+TGG | - | chr5.4:60975167-60975186 | MS.gene041989:CDS | 50.0% |
| GGCAACATAGTCCAGGTGAG+TGG | + | chr5.4:60974766-60974785 | None:intergenic | 55.0% | |
| GGCTTTCACTACCACTCACC+TGG | - | chr5.4:60974752-60974771 | MS.gene041989:CDS | 55.0% | |
| ! | GCGAGGATGGTTCGATTCGT+TGG | + | chr5.4:60974787-60974806 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 60973034 | 60976881 | 60973034 | ID=MS.gene041989 |
| chr5.4 | mRNA | 60973034 | 60976881 | 60973034 | ID=MS.gene041989.t1;Parent=MS.gene041989 |
| chr5.4 | exon | 60976789 | 60976881 | 60976789 | ID=MS.gene041989.t1.exon1;Parent=MS.gene041989.t1 |
| chr5.4 | CDS | 60976789 | 60976881 | 60976789 | ID=cds.MS.gene041989.t1;Parent=MS.gene041989.t1 |
| chr5.4 | exon | 60976069 | 60976351 | 60976069 | ID=MS.gene041989.t1.exon2;Parent=MS.gene041989.t1 |
| chr5.4 | CDS | 60976069 | 60976351 | 60976069 | ID=cds.MS.gene041989.t1;Parent=MS.gene041989.t1 |
| chr5.4 | exon | 60974924 | 60975296 | 60974924 | ID=MS.gene041989.t1.exon3;Parent=MS.gene041989.t1 |
| chr5.4 | CDS | 60974924 | 60975296 | 60974924 | ID=cds.MS.gene041989.t1;Parent=MS.gene041989.t1 |
| chr5.4 | exon | 60974580 | 60974798 | 60974580 | ID=MS.gene041989.t1.exon4;Parent=MS.gene041989.t1 |
| chr5.4 | CDS | 60974580 | 60974798 | 60974580 | ID=cds.MS.gene041989.t1;Parent=MS.gene041989.t1 |
| chr5.4 | exon | 60974209 | 60974347 | 60974209 | ID=MS.gene041989.t1.exon5;Parent=MS.gene041989.t1 |
| chr5.4 | CDS | 60974209 | 60974347 | 60974209 | ID=cds.MS.gene041989.t1;Parent=MS.gene041989.t1 |
| chr5.4 | exon | 60973421 | 60973669 | 60973421 | ID=MS.gene041989.t1.exon6;Parent=MS.gene041989.t1 |
| chr5.4 | CDS | 60973421 | 60973669 | 60973421 | ID=cds.MS.gene041989.t1;Parent=MS.gene041989.t1 |
| chr5.4 | exon | 60973034 | 60973327 | 60973034 | ID=MS.gene041989.t1.exon7;Parent=MS.gene041989.t1 |
| chr5.4 | CDS | 60973034 | 60973327 | 60973034 | ID=cds.MS.gene041989.t1;Parent=MS.gene041989.t1 |
| Gene Sequence |
| Protein sequence |
