Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042046.t1 | XP_013458716.1 | 97.2 | 706 | 20 | 0 | 1 | 706 | 1 | 706 | 0.00E+00 | 1206.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042046.t1 | Q9LTY1 | 60.2 | 726 | 267 | 6 | 1 | 705 | 1 | 725 | 5.3e-218 | 758.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042046.t1 | A0A072UUK2 | 97.2 | 706 | 20 | 0 | 1 | 706 | 1 | 706 | 0.0e+00 | 1206.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene78111 | MS.gene042046 | PPI |
MS.gene067039 | MS.gene042046 | PPI |
MS.gene042046 | MS.gene02806 | PPI |
MS.gene042046 | MS.gene02011 | PPI |
MS.gene042046 | MS.gene99360 | PPI |
MS.gene042046 | MS.gene021252 | PPI |
MS.gene042046 | MS.gene02013 | PPI |
MS.gene042046 | MS.gene003211 | PPI |
MS.gene045227 | MS.gene042046 | PPI |
MS.gene66800 | MS.gene042046 | PPI |
MS.gene042046 | MS.gene03802 | PPI |
MS.gene042046 | MS.gene75567 | PPI |
MS.gene042046 | MS.gene79126 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042046.t1 | MTR_4g134640 | 97.167 | 706 | 20 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1393 |
MS.gene042046.t1 | MTR_4g134640 | 96.955 | 624 | 19 | 0 | 83 | 706 | 3 | 626 | 0.0 | 1212 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042046.t1 | AT5G49880 | 62.672 | 726 | 249 | 6 | 1 | 705 | 1 | 725 | 0.0 | 878 |
Find 133 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCACTCTCAGCTCATTTA+AGG | 0.127080 | 8.3:-158249 | None:intergenic |
AGCTTCACCATTCTTCAAAT+TGG | 0.225489 | 8.3:-158051 | None:intergenic |
ATCAGGGAATACCAACATTT+TGG | 0.238178 | 8.3:+160814 | MS.gene042046:CDS |
TGCGAAGGTTTGTCTCATTT+TGG | 0.238880 | 8.3:-154605 | None:intergenic |
TTCTACAGGGAGTGATGTTT+TGG | 0.261658 | 8.3:+155139 | MS.gene042046:CDS |
CAGCACTTCTATGGTTTGTT+TGG | 0.266549 | 8.3:-159300 | None:intergenic |
TGATCATTCACAACTTAAAA+AGG | 0.271940 | 8.3:+154737 | MS.gene042046:CDS |
CTTGAATTTGAATATGAATC+AGG | 0.287905 | 8.3:+160797 | MS.gene042046:CDS |
TTGAACTGTTTAGGAGAAAC+TGG | 0.306116 | 8.3:+159986 | MS.gene042046:intron |
GGAAATTATGATTGAGTGTT+TGG | 0.313529 | 8.3:-154324 | None:intergenic |
TTCAGAGATATCATTATTAG+AGG | 0.326892 | 8.3:+158370 | MS.gene042046:CDS |
GACAAAGCAACATCTTTAGA+AGG | 0.333909 | 8.3:+154660 | MS.gene042046:CDS |
CTAAAGATGTTGCTTTGTCT+TGG | 0.341234 | 8.3:-154656 | None:intergenic |
GAAACAACTGGAGGTGGCTT+TGG | 0.341324 | 8.3:+157160 | MS.gene042046:CDS |
CATTGCAAACCTCTTTGAAT+TGG | 0.351624 | 8.3:-154954 | None:intergenic |
TCAATTAAACACTGAACTTC+AGG | 0.351637 | 8.3:+154575 | MS.gene042046:CDS |
GCTCAGATTGTGCCCTTTCC+CGG | 0.351664 | 8.3:-156438 | None:intergenic |
TCCCAGGAAGTTTCTTCTAC+AGG | 0.379616 | 8.3:+155125 | MS.gene042046:CDS |
TATTAAAATCAGAGATTAAA+CGG | 0.384162 | 8.3:+157249 | MS.gene042046:CDS |
AACTGCTCGCTTGAAACAAC+TGG | 0.389194 | 8.3:+157148 | MS.gene042046:CDS |
ATTCTTGCCAATTTGAAGAA+TGG | 0.390364 | 8.3:+158044 | MS.gene042046:CDS |
TAAAGATGTTGCTTTGTCTT+GGG | 0.400406 | 8.3:-154655 | None:intergenic |
TCCCTGTAGAAGAAACTTCC+TGG | 0.401242 | 8.3:-155127 | None:intergenic |
CTTTGAATTGGTCCTTAAGA+TGG | 0.406182 | 8.3:-154942 | None:intergenic |
GATTAAACGGATTGAATTAA+CGG | 0.416637 | 8.3:+157262 | MS.gene042046:CDS |
TCATCGGAACGTGGCCTCTT+CGG | 0.417235 | 8.3:-154056 | None:intergenic |
TGCTTTGTCTTGGGCGGAAG+CGG | 0.418194 | 8.3:-154646 | None:intergenic |
TTTGGTTAAACAATTGCAAC+AGG | 0.422570 | 8.3:+155157 | MS.gene042046:CDS |
AGAGCAACTGGACCATCTTA+AGG | 0.435575 | 8.3:+154930 | MS.gene042046:CDS |
GCTTTGGATGCTGCTGAGAT+TGG | 0.436789 | 8.3:+157176 | MS.gene042046:CDS |
GATGAACACCAGCGATCAAA+TGG | 0.439362 | 8.3:+160716 | MS.gene042046:CDS |
TGCGTCGCCGTCGCCGTCAT+CGG | 0.440741 | 8.3:-154072 | None:intergenic |
TGCAGCGTAAATCGTGTCAC+TGG | 0.446319 | 8.3:-160743 | None:intergenic |
TGCTGAAACTGAAGCTGTGC+TGG | 0.451059 | 8.3:+157208 | MS.gene042046:CDS |
TTGTTTGGCTTCATTATCTA+CGG | 0.458408 | 8.3:-159285 | None:intergenic |
GGATCCGGCGGCAGCGGTGG+AGG | 0.459538 | 8.3:+154112 | MS.gene042046:CDS |
GAAGAATTGAAGAGTCAATC+AGG | 0.460323 | 8.3:+159365 | MS.gene042046:CDS |
AGACCTGCTTAAAGAGCAAC+TGG | 0.463462 | 8.3:+154918 | MS.gene042046:CDS |
AAGTAGTGCTAATCCCATTC+AGG | 0.466808 | 8.3:+158085 | MS.gene042046:CDS |
GGAAAAGAGCCGCCGGGAAA+GGG | 0.468010 | 8.3:+156426 | MS.gene042046:CDS |
GAGGGAAATACAACCTGAAT+GGG | 0.468113 | 8.3:-158098 | None:intergenic |
CAAGAACTTGCTGCTTCTAA+AGG | 0.468639 | 8.3:+154480 | MS.gene042046:CDS |
CTGGGATTCCATTTGATCGC+TGG | 0.470960 | 8.3:-160724 | None:intergenic |
TCTTCGGTGGCGGAGGAGTA+CGG | 0.473231 | 8.3:-154040 | None:intergenic |
CGTGGCCTCTTCGGTGGCGG+AGG | 0.474010 | 8.3:-154047 | None:intergenic |
ACTCCAGGATCAACTCTTGA+AGG | 0.475492 | 8.3:+154515 | MS.gene042046:CDS |
AAGCAGGTCTGCTTCTCTCT+CGG | 0.477842 | 8.3:-154905 | None:intergenic |
GATTCTAGAAATAGAAAAGT+TGG | 0.479879 | 8.3:-154763 | None:intergenic |
CACTGGAGAGGGAGAGTGAC+CGG | 0.480225 | 8.3:+158342 | MS.gene042046:CDS |
TGTAAAGCTGCAAATTTAGC+AGG | 0.480888 | 8.3:-156571 | None:intergenic |
AGAGGGAAATACAACCTGAA+TGG | 0.481847 | 8.3:-158099 | None:intergenic |
CACATATCAGTGTCGCCAAA+TGG | 0.482171 | 8.3:+154157 | MS.gene042046:CDS |
CTATGAGGATCCGGCGGCAG+CGG | 0.485300 | 8.3:+154106 | MS.gene042046:CDS |
TCAGCCTGAGGTATCTCGTC+AGG | 0.487574 | 8.3:+161033 | MS.gene042046:CDS |
AAGAATAAAGTCACTGGAGA+GGG | 0.490630 | 8.3:+158331 | MS.gene042046:CDS |
CCCAGGTTGAGATATTCGTT+CGG | 0.491573 | 8.3:+162155 | MS.gene042046:intron |
GGTTCCTCCACCGCTGCCGC+CGG | 0.494163 | 8.3:-154116 | None:intergenic |
ATCTGAGCTATCTAAACTAC+AGG | 0.495023 | 8.3:+156453 | MS.gene042046:CDS |
TGAGGATCCGGCGGCAGCGG+TGG | 0.495529 | 8.3:+154109 | MS.gene042046:CDS |
GGTCCAGTTGCTCTTTAAGC+AGG | 0.500008 | 8.3:-154921 | None:intergenic |
AGGAAAAGAGCCGCCGGGAA+AGG | 0.500081 | 8.3:+156425 | MS.gene042046:CDS |
TGCTTCTAAAGGCCGTGAAA+AGG | 0.505112 | 8.3:+154491 | MS.gene042046:CDS |
GTATCTTAATTTCCTCATGT+TGG | 0.507329 | 8.3:-158280 | None:intergenic |
CCCAGGAAGTTTCTTCTACA+GGG | 0.507888 | 8.3:+155126 | MS.gene042046:CDS |
GAACGTGGCCTCTTCGGTGG+CGG | 0.508356 | 8.3:-154050 | None:intergenic |
GATATCATTATTAGAGGCAA+AGG | 0.509270 | 8.3:+158376 | MS.gene042046:CDS |
GCTTGTTATCTATGAGGATC+CGG | 0.510386 | 8.3:+154097 | MS.gene042046:CDS |
AGGCCGTGAAAAGGCACTCC+AGG | 0.512926 | 8.3:+154500 | MS.gene042046:CDS |
TTCCTTCTACAGTTAGGTCA+TGG | 0.513722 | 8.3:+159212 | MS.gene042046:intron |
AAATCTCACAGCACGCCCTC+CGG | 0.515186 | 8.3:-160216 | None:intergenic |
TCAACATCTTACCAAAATGT+TGG | 0.516170 | 8.3:-160825 | None:intergenic |
TTGAATTTGAATATGAATCA+GGG | 0.517570 | 8.3:+160798 | MS.gene042046:CDS |
GAAAGACTCCACTGTTATGT+TGG | 0.523713 | 8.3:-162206 | None:intergenic |
TGCTGGAGGAAAAGAGCCGC+CGG | 0.524219 | 8.3:+156419 | MS.gene042046:CDS |
TTTAGGAGAAACTGGAAAGC+TGG | 0.527669 | 8.3:+159994 | MS.gene042046:intron |
TCTCTATGGTCTCTGAAAGA+TGG | 0.530121 | 8.3:-154692 | None:intergenic |
GGCGGAAGCGGCATGAGACT+CGG | 0.530624 | 8.3:-154634 | None:intergenic |
GTTATGTTGGCAGTAAAAGC+AGG | 0.531953 | 8.3:-162193 | None:intergenic |
GCTGGTGGAGAGCTACATAT+CGG | 0.532673 | 8.3:+160012 | MS.gene042046:CDS |
AGCAAGAAGAATAAAGTCAC+TGG | 0.533486 | 8.3:+158325 | MS.gene042046:CDS |
CGCACAGCTTGTTATCTATG+AGG | 0.533714 | 8.3:+154091 | MS.gene042046:CDS |
ACCTGGCATCTCATGTTTCG+AGG | 0.534847 | 8.3:+156543 | MS.gene042046:CDS |
CCTCCTTCAAGAGTTGATCC+TGG | 0.535275 | 8.3:-154518 | None:intergenic |
ATGATATCTCTGAACGGAGC+CGG | 0.537996 | 8.3:-158361 | None:intergenic |
ACATTGACAACTTACATTAG+CGG | 0.540144 | 8.3:-154787 | None:intergenic |
AAGAGGCCACGTTCCGATGA+CGG | 0.543240 | 8.3:+154059 | MS.gene042046:CDS |
TCCTCGAAACATGAGATGCC+AGG | 0.545495 | 8.3:-156544 | None:intergenic |
TGAAATTCTGTCTGCAAACA+CGG | 0.545580 | 8.3:-160188 | None:intergenic |
AATTTGAAGAATGGTGAAGC+TGG | 0.552951 | 8.3:+158053 | MS.gene042046:CDS |
TCGCTTGAAACAACTGGAGG+TGG | 0.553739 | 8.3:+157154 | MS.gene042046:CDS |
CTATATTTGGCAGATTGTGA+TGG | 0.562845 | 8.3:+160694 | MS.gene042046:intron |
CCCTGTAGAAGAAACTTCCT+GGG | 0.564281 | 8.3:-155126 | None:intergenic |
TAGAGGATCAAATATCATCA+TGG | 0.572164 | 8.3:+156500 | MS.gene042046:CDS |
ACATCTTTAGAAGGGAAGCT+AGG | 0.573337 | 8.3:+154669 | MS.gene042046:CDS |
TCGGAACGTGGCCTCTTCGG+TGG | 0.574434 | 8.3:-154053 | None:intergenic |
CTTACCTGACGAGATACCTC+AGG | 0.581003 | 8.3:-161037 | None:intergenic |
GTGCATAGCATGTGCTCGGA+GGG | 0.581042 | 8.3:-154137 | None:intergenic |
GTACTCCTCCGCCACCGAAG+AGG | 0.584759 | 8.3:+154042 | MS.gene042046:CDS |
ACAAAGCAACATCTTTAGAA+GGG | 0.593342 | 8.3:+154661 | MS.gene042046:CDS |
AATTTACAGTACACAGAAGG+AGG | 0.597563 | 8.3:+157118 | MS.gene042046:CDS |
TCTTAAGGACCAATTCAAAG+AGG | 0.599055 | 8.3:+154945 | MS.gene042046:CDS |
GGTAATTTACAGTACACAGA+AGG | 0.606067 | 8.3:+157115 | MS.gene042046:CDS |
CCGTCGCCGTCATCGGAACG+TGG | 0.606794 | 8.3:-154065 | None:intergenic |
CACCTTAAATGAGCTGAGAG+TGG | 0.608157 | 8.3:+158247 | MS.gene042046:CDS |
GCAGCGTAAATCGTGTCACT+GGG | 0.613627 | 8.3:-160742 | None:intergenic |
GAGACTCGGCTTGTATGCGA+AGG | 0.619176 | 8.3:-154620 | None:intergenic |
GGTTAATAATCGCCAACATG+AGG | 0.626687 | 8.3:+158268 | MS.gene042046:CDS |
CCACGTTCCGATGACGGCGA+CGG | 0.626939 | 8.3:+154065 | MS.gene042046:CDS |
AGATGTTGCTTTGTCTTGGG+CGG | 0.631632 | 8.3:-154652 | None:intergenic |
GCTGGAGGAAAAGAGCCGCC+GGG | 0.633967 | 8.3:+156420 | MS.gene042046:CDS |
GAAGAATAAAGTCACTGGAG+AGG | 0.635917 | 8.3:+158330 | MS.gene042046:CDS |
AGTACACAGAAGGAGGGTGA+AGG | 0.638528 | 8.3:+157125 | MS.gene042046:CDS |
CACTAGAGAAGCGAGAAGAG+AGG | 0.638861 | 8.3:+160068 | MS.gene042046:CDS |
CTAATAATGATATCTCTGAA+CGG | 0.639682 | 8.3:-158367 | None:intergenic |
TAATACAAAAGTTCTGCGGA+TGG | 0.640306 | 8.3:+159250 | MS.gene042046:CDS |
AGACCATTAAATTTATGACA+AGG | 0.640427 | 8.3:-162239 | None:intergenic |
AGGAGAAACTGGAAAGCTGG+TGG | 0.645216 | 8.3:+159997 | MS.gene042046:intron |
ATATGTGCATAGCATGTGCT+CGG | 0.645443 | 8.3:-154141 | None:intergenic |
CACTGAGAGGAAGAAATCTG+TGG | 0.647981 | 8.3:+154437 | MS.gene042046:CDS |
TTTGAAGGAGAAACTGCTGG+AGG | 0.658729 | 8.3:+156405 | MS.gene042046:CDS |
TGCTCGCTTGAAACAACTGG+AGG | 0.661475 | 8.3:+157151 | MS.gene042046:CDS |
TGTGCATAGCATGTGCTCGG+AGG | 0.667920 | 8.3:-154138 | None:intergenic |
TCTTTCAGAGACCATAGAGA+GGG | 0.673302 | 8.3:+154695 | MS.gene042046:CDS |
ATGACATGACAGACACTGAG+AGG | 0.677214 | 8.3:+154424 | MS.gene042046:intron |
TCATTACACATCTCAGCCTG+AGG | 0.681344 | 8.3:+161021 | MS.gene042046:CDS |
CCAGGATCAACTCTTGAAGG+AGG | 0.683215 | 8.3:+154518 | MS.gene042046:CDS |
CTGCTAATACAAAAGTTCTG+CGG | 0.683446 | 8.3:+159246 | MS.gene042046:CDS |
GCAGCTAGCAGTTGTCACAG+AGG | 0.683964 | 8.3:+158004 | MS.gene042046:intron |
ATTTACAGTACACAGAAGGA+GGG | 0.690417 | 8.3:+157119 | MS.gene042046:CDS |
TGTTATCTATGAGGATCCGG+CGG | 0.704459 | 8.3:+154100 | MS.gene042046:CDS |
CAGATTGTGCCCTTTCCCGG+CGG | 0.704598 | 8.3:-156435 | None:intergenic |
ATCTTTCAGAGACCATAGAG+AGG | 0.704981 | 8.3:+154694 | MS.gene042046:CDS |
TTGATGATTAAAGACATACC+TGG | 0.713365 | 8.3:+156526 | MS.gene042046:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 154032 | 162249 | 154032 | ID=MS.gene042046 |
chr8.3 | mRNA | 154032 | 162249 | 154032 | ID=MS.gene042046.t1;Parent=MS.gene042046 |
chr8.3 | exon | 154032 | 154178 | 154032 | ID=MS.gene042046.t1.exon1;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 154032 | 154178 | 154032 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 154256 | 154355 | 154256 | ID=MS.gene042046.t1.exon2;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 154256 | 154355 | 154256 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 154436 | 154794 | 154436 | ID=MS.gene042046.t1.exon3;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 154436 | 154794 | 154436 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 154874 | 154966 | 154874 | ID=MS.gene042046.t1.exon4;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 154874 | 154966 | 154874 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 155077 | 155193 | 155077 | ID=MS.gene042046.t1.exon5;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 155077 | 155193 | 155077 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 156349 | 156596 | 156349 | ID=MS.gene042046.t1.exon6;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 156349 | 156596 | 156349 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 157112 | 157283 | 157112 | ID=MS.gene042046.t1.exon7;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 157112 | 157283 | 157112 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 158008 | 158106 | 158008 | ID=MS.gene042046.t1.exon8;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 158008 | 158106 | 158008 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 158194 | 158397 | 158194 | ID=MS.gene042046.t1.exon9;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 158194 | 158397 | 158194 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 159224 | 159386 | 159224 | ID=MS.gene042046.t1.exon10;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 159224 | 159386 | 159224 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 159999 | 160089 | 159999 | ID=MS.gene042046.t1.exon11;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 159999 | 160089 | 159999 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 160180 | 160249 | 160180 | ID=MS.gene042046.t1.exon12;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 160180 | 160249 | 160180 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 160707 | 160835 | 160707 | ID=MS.gene042046.t1.exon13;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 160707 | 160835 | 160707 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 161016 | 161054 | 161016 | ID=MS.gene042046.t1.exon14;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 161016 | 161054 | 161016 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
chr8.3 | exon | 162160 | 162249 | 162160 | ID=MS.gene042046.t1.exon15;Parent=MS.gene042046.t1 |
chr8.3 | CDS | 162160 | 162249 | 162160 | ID=cds.MS.gene042046.t1;Parent=MS.gene042046.t1 |
Gene Sequence |
Protein sequence |