Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042750.t1 | XP_004497487.1 | 73.7 | 460 | 121 | 0 | 1 | 460 | 1 | 460 | 6.80E-198 | 700.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042750.t1 | B9SCB6 | 52.9 | 444 | 205 | 2 | 17 | 460 | 17 | 456 | 5.0e-141 | 502.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042750.t1 | A0A1S2Y0Q7 | 73.7 | 460 | 121 | 0 | 1 | 460 | 1 | 460 | 4.9e-198 | 700.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene038982 | MS.gene042750 | PPI |
MS.gene066316 | MS.gene042750 | PPI |
MS.gene77594 | MS.gene042750 | PPI |
MS.gene042750 | MS.gene42723 | PPI |
MS.gene042750 | MS.gene069726 | PPI |
MS.gene042750 | MS.gene045736 | PPI |
MS.gene038985 | MS.gene042750 | PPI |
MS.gene066310 | MS.gene042750 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042750.t1 | MTR_6g039440 | 68.192 | 459 | 146 | 0 | 4 | 462 | 1 | 459 | 0.0 | 666 |
MS.gene042750.t1 | MTR_5g062230 | 70.470 | 447 | 132 | 0 | 16 | 462 | 13 | 459 | 0.0 | 665 |
MS.gene042750.t1 | MTR_6g008560 | 67.245 | 461 | 150 | 1 | 1 | 460 | 1 | 461 | 0.0 | 662 |
MS.gene042750.t1 | MTR_4g048460 | 63.314 | 507 | 172 | 2 | 3 | 502 | 8 | 507 | 0.0 | 650 |
MS.gene042750.t1 | MTR_3g464190 | 64.730 | 482 | 162 | 2 | 1 | 474 | 1 | 482 | 0.0 | 648 |
MS.gene042750.t1 | MTR_4g048460 | 67.834 | 457 | 147 | 0 | 3 | 459 | 8 | 464 | 0.0 | 643 |
MS.gene042750.t1 | MTR_5g073200 | 61.323 | 499 | 178 | 3 | 12 | 502 | 4 | 495 | 0.0 | 608 |
MS.gene042750.t1 | MTR_5g073260 | 65.111 | 450 | 155 | 2 | 13 | 460 | 7 | 456 | 0.0 | 608 |
MS.gene042750.t1 | MTR_5g094620 | 63.043 | 460 | 151 | 2 | 1 | 460 | 1 | 441 | 0.0 | 607 |
MS.gene042750.t1 | MTR_4g081460 | 59.333 | 450 | 180 | 2 | 13 | 460 | 18 | 466 | 0.0 | 560 |
MS.gene042750.t1 | MTR_6g008560 | 67.869 | 305 | 98 | 0 | 156 | 460 | 1 | 305 | 2.89e-155 | 449 |
MS.gene042750.t1 | MTR_2g082010 | 45.259 | 464 | 249 | 5 | 2 | 462 | 13 | 474 | 1.13e-147 | 436 |
MS.gene042750.t1 | MTR_2g081980 | 44.789 | 451 | 243 | 5 | 15 | 460 | 12 | 461 | 1.35e-142 | 422 |
MS.gene042750.t1 | MTR_8g007515 | 43.825 | 502 | 262 | 6 | 13 | 502 | 9 | 502 | 3.06e-141 | 419 |
MS.gene042750.t1 | MTR_2g082060 | 41.199 | 517 | 286 | 8 | 2 | 513 | 7 | 510 | 7.91e-140 | 415 |
MS.gene042750.t1 | MTR_4g019550 | 41.791 | 469 | 250 | 7 | 2 | 460 | 7 | 462 | 3.90e-119 | 362 |
MS.gene042750.t1 | MTR_4g045810 | 36.222 | 450 | 276 | 4 | 13 | 458 | 41 | 483 | 5.34e-97 | 305 |
MS.gene042750.t1 | MTR_2g082050 | 39.268 | 410 | 192 | 6 | 53 | 460 | 9 | 363 | 3.32e-95 | 297 |
MS.gene042750.t1 | MTR_2g064425 | 38.095 | 441 | 264 | 5 | 17 | 455 | 53 | 486 | 1.24e-94 | 300 |
MS.gene042750.t1 | MTR_2g089120 | 37.349 | 415 | 243 | 5 | 49 | 458 | 67 | 469 | 2.97e-92 | 293 |
MS.gene042750.t1 | MTR_8g057020 | 35.329 | 501 | 302 | 8 | 11 | 502 | 49 | 536 | 1.93e-90 | 288 |
MS.gene042750.t1 | MTR_2g089130 | 36.077 | 413 | 250 | 3 | 49 | 458 | 67 | 468 | 4.82e-90 | 287 |
MS.gene042750.t1 | MTR_2g064425 | 42.975 | 363 | 195 | 7 | 17 | 376 | 53 | 406 | 2.99e-86 | 273 |
MS.gene042750.t1 | MTR_2g065450 | 35.491 | 448 | 277 | 5 | 11 | 455 | 52 | 490 | 3.26e-85 | 275 |
MS.gene042750.t1 | MTR_2g064425 | 36.054 | 441 | 258 | 6 | 17 | 455 | 53 | 471 | 4.18e-84 | 271 |
MS.gene042750.t1 | MTR_5g094530 | 58.904 | 219 | 52 | 4 | 166 | 381 | 1 | 184 | 2.48e-77 | 241 |
MS.gene042750.t1 | MTR_2g064425 | 40.496 | 363 | 189 | 8 | 17 | 376 | 53 | 391 | 8.72e-76 | 245 |
MS.gene042750.t1 | MTR_4g092010 | 31.915 | 470 | 303 | 9 | 8 | 467 | 18 | 480 | 9.30e-71 | 236 |
MS.gene042750.t1 | MTR_7g010710 | 30.670 | 463 | 310 | 7 | 1 | 458 | 1 | 457 | 2.84e-69 | 232 |
MS.gene042750.t1 | MTR_4g092020 | 31.655 | 417 | 277 | 4 | 44 | 459 | 64 | 473 | 2.05e-66 | 225 |
MS.gene042750.t1 | MTR_2g010960 | 29.577 | 426 | 283 | 5 | 42 | 455 | 2 | 422 | 5.77e-62 | 212 |
MS.gene042750.t1 | MTR_6g064980 | 30.769 | 416 | 264 | 8 | 54 | 455 | 13 | 418 | 1.34e-59 | 205 |
MS.gene042750.t1 | MTR_7g050990 | 61.446 | 166 | 53 | 2 | 199 | 364 | 27 | 181 | 4.55e-59 | 210 |
MS.gene042750.t1 | MTR_3g063170 | 29.512 | 410 | 277 | 7 | 54 | 455 | 13 | 418 | 6.18e-56 | 196 |
MS.gene042750.t1 | MTR_3g465090 | 29.756 | 410 | 276 | 6 | 54 | 455 | 13 | 418 | 6.08e-55 | 193 |
MS.gene042750.t1 | MTR_3g063140 | 29.274 | 427 | 278 | 8 | 54 | 466 | 13 | 429 | 3.18e-54 | 191 |
MS.gene042750.t1 | MTR_3g063120 | 29.146 | 398 | 258 | 7 | 73 | 455 | 6 | 394 | 3.55e-53 | 187 |
MS.gene042750.t1 | MTR_3g052120 | 29.227 | 414 | 273 | 7 | 54 | 455 | 13 | 418 | 1.70e-50 | 181 |
MS.gene042750.t1 | MTR_6g065040 | 29.231 | 325 | 213 | 6 | 138 | 455 | 2 | 316 | 2.68e-42 | 156 |
MS.gene042750.t1 | MTR_3g063160 | 31.636 | 275 | 172 | 5 | 63 | 328 | 21 | 288 | 5.08e-37 | 138 |
MS.gene042750.t1 | MTR_3g058160 | 27.363 | 402 | 257 | 12 | 70 | 441 | 65 | 461 | 4.23e-31 | 127 |
MS.gene042750.t1 | MTR_2g012870 | 25.000 | 456 | 309 | 13 | 24 | 457 | 212 | 656 | 7.31e-31 | 127 |
MS.gene042750.t1 | MTR_3g058160 | 27.163 | 416 | 262 | 13 | 70 | 455 | 269 | 673 | 1.04e-30 | 127 |
MS.gene042750.t1 | MTR_3g058160 | 27.163 | 416 | 262 | 13 | 70 | 455 | 256 | 660 | 1.10e-30 | 127 |
MS.gene042750.t1 | MTR_3g058160 | 27.163 | 416 | 262 | 13 | 70 | 455 | 276 | 680 | 1.19e-30 | 127 |
MS.gene042750.t1 | MTR_2g064295 | 25.984 | 381 | 245 | 11 | 70 | 421 | 256 | 628 | 1.16e-29 | 124 |
MS.gene042750.t1 | MTR_2g012900 | 24.681 | 470 | 307 | 16 | 24 | 457 | 212 | 670 | 4.31e-29 | 122 |
MS.gene042750.t1 | MTR_7g057390 | 68.000 | 75 | 24 | 0 | 385 | 459 | 1 | 75 | 2.51e-28 | 111 |
MS.gene042750.t1 | MTR_3g058160 | 26.316 | 437 | 260 | 14 | 70 | 455 | 276 | 701 | 3.60e-28 | 119 |
MS.gene042750.t1 | MTR_7g057340 | 65.385 | 78 | 27 | 0 | 385 | 462 | 1 | 78 | 4.76e-28 | 110 |
MS.gene042750.t1 | MTR_7g094970 | 27.881 | 269 | 164 | 7 | 73 | 313 | 211 | 477 | 3.72e-24 | 107 |
MS.gene042750.t1 | MTR_7g011663 | 30.000 | 270 | 155 | 7 | 73 | 310 | 349 | 616 | 1.89e-23 | 105 |
MS.gene042750.t1 | MTR_5g030050 | 29.434 | 265 | 152 | 8 | 73 | 312 | 3 | 257 | 1.46e-22 | 98.6 |
MS.gene042750.t1 | MTR_7g011770 | 29.210 | 291 | 175 | 8 | 73 | 334 | 245 | 533 | 8.93e-21 | 96.7 |
MS.gene042750.t1 | MTR_1g048820 | 47.887 | 71 | 37 | 0 | 450 | 520 | 47 | 117 | 6.11e-17 | 82.0 |
MS.gene042750.t1 | MTR_5g081730 | 36.364 | 110 | 65 | 1 | 153 | 257 | 2 | 111 | 1.58e-13 | 68.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene042750.t1 | AT5G23960 | 39.514 | 453 | 268 | 4 | 13 | 462 | 3 | 452 | 1.49e-119 | 362 |
MS.gene042750.t1 | AT5G23960 | 39.560 | 455 | 267 | 5 | 13 | 462 | 3 | 454 | 1.11e-118 | 360 |
MS.gene042750.t1 | AT1G70080 | 37.856 | 457 | 275 | 6 | 8 | 457 | 57 | 511 | 5.87e-105 | 327 |
MS.gene042750.t1 | AT3G14540 | 37.330 | 442 | 270 | 3 | 22 | 459 | 65 | 503 | 1.13e-98 | 307 |
MS.gene042750.t1 | AT1G31950 | 36.000 | 450 | 278 | 5 | 22 | 465 | 70 | 515 | 1.28e-98 | 308 |
MS.gene042750.t1 | AT1G31950 | 36.343 | 443 | 273 | 4 | 22 | 459 | 70 | 508 | 2.89e-98 | 309 |
MS.gene042750.t1 | AT1G31950 | 36.261 | 444 | 273 | 5 | 22 | 459 | 70 | 509 | 1.10e-97 | 308 |
MS.gene042750.t1 | AT3G14520 | 36.652 | 442 | 273 | 4 | 22 | 459 | 68 | 506 | 1.28e-97 | 308 |
MS.gene042750.t1 | AT3G14540 | 37.330 | 442 | 270 | 3 | 22 | 459 | 65 | 503 | 1.75e-97 | 307 |
MS.gene042750.t1 | AT3G14490 | 36.748 | 449 | 273 | 6 | 17 | 459 | 60 | 503 | 1.45e-95 | 302 |
MS.gene042750.t1 | AT3G32030 | 35.294 | 442 | 279 | 5 | 22 | 459 | 68 | 506 | 2.69e-91 | 291 |
MS.gene042750.t1 | AT1G33750 | 35.616 | 438 | 276 | 4 | 24 | 459 | 73 | 506 | 1.47e-90 | 289 |
MS.gene042750.t1 | AT4G15870 | 35.973 | 442 | 260 | 7 | 25 | 459 | 75 | 500 | 1.96e-89 | 286 |
MS.gene042750.t1 | AT4G20210 | 35.477 | 451 | 278 | 7 | 17 | 459 | 58 | 503 | 6.02e-89 | 285 |
MS.gene042750.t1 | AT5G44630 | 34.690 | 467 | 290 | 7 | 1 | 459 | 1 | 460 | 7.82e-89 | 283 |
MS.gene042750.t1 | AT3G29410 | 33.268 | 511 | 322 | 7 | 17 | 512 | 64 | 570 | 1.56e-87 | 281 |
MS.gene042750.t1 | AT3G29190 | 35.862 | 435 | 253 | 9 | 38 | 455 | 75 | 500 | 1.44e-85 | 276 |
MS.gene042750.t1 | AT4G20200 | 36.879 | 423 | 249 | 9 | 48 | 459 | 92 | 507 | 2.11e-85 | 276 |
MS.gene042750.t1 | AT4G13300 | 35.426 | 446 | 278 | 6 | 25 | 464 | 20 | 461 | 1.14e-84 | 272 |
MS.gene042750.t1 | AT4G20230 | 33.691 | 466 | 285 | 9 | 6 | 459 | 66 | 519 | 6.42e-83 | 270 |
MS.gene042750.t1 | AT4G20230 | 33.691 | 466 | 285 | 9 | 6 | 459 | 54 | 507 | 7.89e-83 | 269 |
MS.gene042750.t1 | AT2G23230 | 32.871 | 505 | 318 | 9 | 16 | 504 | 55 | 554 | 6.70e-82 | 267 |
MS.gene042750.t1 | AT4G16730 | 32.200 | 441 | 285 | 5 | 28 | 458 | 2 | 438 | 6.79e-82 | 265 |
MS.gene042750.t1 | AT3G29410 | 33.333 | 468 | 295 | 5 | 59 | 512 | 1 | 465 | 1.56e-81 | 263 |
MS.gene042750.t1 | AT2G23230 | 32.673 | 505 | 314 | 10 | 16 | 504 | 55 | 549 | 2.42e-79 | 260 |
MS.gene042750.t1 | AT4G13280 | 34.862 | 436 | 274 | 6 | 27 | 456 | 22 | 453 | 1.37e-78 | 256 |
MS.gene042750.t1 | AT4G16740 | 31.622 | 487 | 310 | 9 | 12 | 486 | 21 | 496 | 1.44e-78 | 257 |
MS.gene042750.t1 | AT4G16730 | 32.658 | 395 | 254 | 3 | 73 | 458 | 1 | 392 | 1.01e-77 | 253 |
MS.gene042750.t1 | AT3G29110 | 34.590 | 451 | 282 | 9 | 17 | 459 | 55 | 500 | 7.90e-77 | 253 |
MS.gene042750.t1 | AT2G24210 | 32.379 | 454 | 291 | 7 | 14 | 458 | 43 | 489 | 3.64e-76 | 251 |
MS.gene042750.t1 | AT1G66020 | 32.962 | 449 | 292 | 6 | 17 | 459 | 56 | 501 | 1.95e-75 | 249 |
MS.gene042750.t1 | AT3G25830 | 31.360 | 456 | 293 | 9 | 15 | 458 | 45 | 492 | 4.90e-73 | 243 |
MS.gene042750.t1 | AT3G25820 | 31.360 | 456 | 293 | 9 | 15 | 458 | 45 | 492 | 4.90e-73 | 243 |
MS.gene042750.t1 | AT3G25810 | 32.104 | 461 | 285 | 10 | 15 | 458 | 45 | 494 | 2.34e-71 | 239 |
MS.gene042750.t1 | AT1G61680 | 31.049 | 467 | 296 | 7 | 2 | 459 | 32 | 481 | 6.86e-70 | 234 |
MS.gene042750.t1 | AT4G16740 | 35.674 | 356 | 211 | 6 | 12 | 357 | 21 | 368 | 7.54e-70 | 229 |
MS.gene042750.t1 | AT1G48800 | 30.932 | 472 | 299 | 10 | 17 | 467 | 63 | 528 | 1.40e-69 | 234 |
MS.gene042750.t1 | AT4G13280 | 33.486 | 436 | 250 | 8 | 27 | 456 | 22 | 423 | 1.35e-67 | 227 |
MS.gene042750.t1 | AT1G61680 | 30.621 | 467 | 291 | 8 | 2 | 459 | 32 | 474 | 1.14e-66 | 225 |
MS.gene042750.t1 | AT3G25820 | 32.383 | 386 | 242 | 8 | 15 | 389 | 45 | 422 | 2.39e-65 | 219 |
MS.gene042750.t1 | AT1G66020 | 34.688 | 369 | 232 | 6 | 17 | 379 | 56 | 421 | 3.05e-65 | 218 |
MS.gene042750.t1 | AT1G48820 | 31.250 | 448 | 259 | 10 | 17 | 459 | 63 | 466 | 1.57e-64 | 219 |
MS.gene042750.t1 | AT5G48110 | 39.918 | 243 | 143 | 3 | 216 | 457 | 2 | 242 | 7.22e-64 | 211 |
MS.gene042750.t1 | AT4G16740 | 35.562 | 329 | 194 | 6 | 12 | 330 | 21 | 341 | 1.40e-61 | 207 |
MS.gene042750.t1 | AT4G16740 | 35.562 | 329 | 194 | 6 | 12 | 330 | 21 | 341 | 1.40e-61 | 207 |
MS.gene042750.t1 | AT3G25820 | 33.639 | 327 | 198 | 8 | 15 | 330 | 45 | 363 | 4.12e-56 | 193 |
MS.gene042750.t1 | AT3G25820 | 33.639 | 327 | 198 | 8 | 15 | 330 | 45 | 363 | 4.12e-56 | 193 |
MS.gene042750.t1 | AT1G61120 | 26.064 | 376 | 238 | 10 | 68 | 418 | 286 | 646 | 7.73e-27 | 115 |
MS.gene042750.t1 | AT1G79460 | 26.371 | 383 | 243 | 14 | 70 | 422 | 274 | 647 | 7.12e-25 | 109 |
MS.gene042750.t1 | AT4G02780 | 29.688 | 256 | 150 | 7 | 73 | 300 | 334 | 587 | 5.62e-22 | 100 |
Find 88 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTACTTACGTTGGCAAAAT+TGG | 0.135143 | 6.1:-60537161 | MS.gene042750:CDS |
ATTCTATTTCTGTGCTATTT+AGG | 0.140011 | 6.1:-60538080 | MS.gene042750:CDS |
TTCTATTTCTGTGCTATTTA+GGG | 0.183039 | 6.1:-60538079 | MS.gene042750:CDS |
CTGCTGTTCATTGCAGGCTT+AGG | 0.241228 | 6.1:-60535632 | MS.gene042750:CDS |
ATATATCTGATTCTGACTTA+TGG | 0.245637 | 6.1:-60523655 | MS.gene042750:CDS |
AGCCTACATCAAAAGGAATT+TGG | 0.257080 | 6.1:-60537121 | MS.gene042750:CDS |
ACGTAAGTAGAATTTCATTA+TGG | 0.259315 | 6.1:+60537173 | None:intergenic |
TCCGTATGCTTCAGAATCTT+TGG | 0.269105 | 6.1:-60538795 | MS.gene042750:intron |
GTCATCAATGTATGATAAAA+TGG | 0.271835 | 6.1:+60536851 | None:intergenic |
GCAAGCCCAATACGAGTTAA+TGG | 0.277341 | 6.1:-60523624 | MS.gene042750:CDS |
ATGCTGCTGCTGTTCATTGC+AGG | 0.286868 | 6.1:-60535638 | MS.gene042750:CDS |
CAGATTTCCACCCTAGCGTT+TGG | 0.305039 | 6.1:-60538832 | MS.gene042750:CDS |
TATATCTGATTCTGACTTAT+GGG | 0.306100 | 6.1:-60523654 | MS.gene042750:CDS |
AGATTTCCACCCTAGCGTTT+GGG | 0.318717 | 6.1:-60538831 | MS.gene042750:CDS |
AGACGAAATTAATCAAGTTT+TGG | 0.321368 | 6.1:-60538160 | MS.gene042750:CDS |
TTCCTTGCTTGTCCTTGAAT+TGG | 0.334271 | 6.1:+60537449 | None:intergenic |
TAGTTGTTTGGATGATCTTC+CGG | 0.341349 | 6.1:-60536504 | MS.gene042750:CDS |
AGGAGTTCAGAAACATAGTT+AGG | 0.342506 | 6.1:-60523556 | MS.gene042750:CDS |
GAGTAGTAGAATGTTGCTTT+TGG | 0.347068 | 6.1:-60536938 | MS.gene042750:CDS |
CCAATTGAAGATATCATTTG+TGG | 0.372281 | 6.1:+60535686 | None:intergenic |
TTCATGTACTCCTCTGTTGT+TGG | 0.374525 | 6.1:+60535777 | None:intergenic |
TGCTGTTCATTGCAGGCTTA+GGG | 0.376798 | 6.1:-60535631 | MS.gene042750:CDS |
CCACAAATGATATCTTCAAT+TGG | 0.377027 | 6.1:-60535686 | MS.gene042750:CDS |
CGTAAGTAGAATTTCATTAT+GGG | 0.378944 | 6.1:+60537174 | None:intergenic |
TAGGTGGGATATTAGTTGTT+TGG | 0.387739 | 6.1:-60536516 | MS.gene042750:CDS |
GGATGAATCTTGCTCATAGA+TGG | 0.390050 | 6.1:+60537195 | None:intergenic |
GATTGACTCAATATGTCGTT+TGG | 0.390339 | 6.1:-60538202 | MS.gene042750:CDS |
TCGCAAGAGAAGGACTCAAT+TGG | 0.412353 | 6.1:+60537290 | None:intergenic |
TAGAGAAACTTCATGTAATC+CGG | 0.427919 | 6.1:+60536485 | None:intergenic |
GTTTCTCTATAAACCACTCT+TGG | 0.439981 | 6.1:-60536471 | MS.gene042750:CDS |
GCTCCAAAGCCTACATCAAA+AGG | 0.450495 | 6.1:-60537128 | MS.gene042750:CDS |
TACGACTTCTTACATTGGAA+TGG | 0.454510 | 6.1:-60535718 | MS.gene042750:CDS |
CACAAATGATATCTTCAATT+GGG | 0.456797 | 6.1:-60535685 | MS.gene042750:CDS |
ACTACTCTGTCCCGTGCATA+AGG | 0.457542 | 6.1:+60536954 | None:intergenic |
ACGACTTCTTACATTGGAAT+GGG | 0.460983 | 6.1:-60535717 | MS.gene042750:CDS |
TTCCTTGCTTGACAATATTG+AGG | 0.465049 | 6.1:+60536894 | None:intergenic |
GCCTCACATATGATGATTCA+TGG | 0.465433 | 6.1:-60537373 | MS.gene042750:CDS |
AGTAGATAGCTTCAATCATA+AGG | 0.470255 | 6.1:-60538882 | MS.gene042750:CDS |
ATTGACTCAATATGTCGTTT+GGG | 0.473862 | 6.1:-60538201 | MS.gene042750:CDS |
AGATGTATTCAACCAATTCA+AGG | 0.477088 | 6.1:-60537461 | MS.gene042750:CDS |
GAGCAAGAAGTGAAGAAAGA+AGG | 0.477567 | 6.1:-60536431 | MS.gene042750:CDS |
ATCAGATATATGATATTCCA+TGG | 0.482748 | 6.1:+60523667 | None:intergenic |
CGCAAGAGAAGGACTCAATT+GGG | 0.484801 | 6.1:+60537291 | None:intergenic |
CATGGTCTTTACATTTCACC+TGG | 0.512141 | 6.1:-60538045 | MS.gene042750:intron |
AACATTGATCATAGATGTTG+AGG | 0.512550 | 6.1:-60537416 | MS.gene042750:CDS |
AACAATATCAAGTGGTTACC+CGG | 0.513550 | 6.1:-60535748 | MS.gene042750:CDS |
AGCCTCAATATTGTCAAGCA+AGG | 0.528176 | 6.1:-60536896 | MS.gene042750:CDS |
CTGTGCTATTTAGGGTGTTG+AGG | 0.528533 | 6.1:-60538071 | MS.gene042750:CDS |
TTCAGAAACATAGTTAGGGC+AGG | 0.531196 | 6.1:-60523551 | MS.gene042750:CDS |
TGGCCTCACTCATGTAAGCT+TGG | 0.536408 | 6.1:+60535823 | None:intergenic |
ATCAAGTGGTTACCCGGTGT+TGG | 0.539295 | 6.1:-60535742 | MS.gene042750:CDS |
GATTTCCACCCTAGCGTTTG+GGG | 0.542721 | 6.1:-60538830 | MS.gene042750:CDS |
TTGTCAAGCAAGGAAAATGA+TGG | 0.545763 | 6.1:-60536886 | MS.gene042750:CDS |
GCAAATTGATAAACTAAAAG+AGG | 0.546970 | 6.1:-60538280 | MS.gene042750:CDS |
TAGCTTCTTGCCTCTAGCCT+AGG | 0.554871 | 6.1:+60537223 | None:intergenic |
TTGACTTGTGTCGCAAGAGA+AGG | 0.560387 | 6.1:+60537280 | None:intergenic |
TCAGATATATGATATTCCAT+GGG | 0.565546 | 6.1:+60523668 | None:intergenic |
GGAATTTGATATAAATATTG+CGG | 0.567112 | 6.1:-60538304 | MS.gene042750:CDS |
CTTGCGACACAAGTCAAACA+TGG | 0.567322 | 6.1:-60537274 | MS.gene042750:CDS |
TTTAGGGTGTTGAGGCAACA+TGG | 0.568035 | 6.1:-60538063 | MS.gene042750:CDS |
TGAAATCAATAAACTAGTTG+AGG | 0.568994 | 6.1:-60523576 | MS.gene042750:CDS |
GGAGTTCAGAAACATAGTTA+GGG | 0.571162 | 6.1:-60523555 | MS.gene042750:CDS |
AATGGAGAAATAACTCTCAA+AGG | 0.571243 | 6.1:-60538111 | MS.gene042750:CDS |
TTGGCTACGACTTCTTACAT+TGG | 0.575246 | 6.1:-60535723 | MS.gene042750:CDS |
AAGCTTACATGAGTGAGGCC+AGG | 0.576657 | 6.1:-60535821 | MS.gene042750:CDS |
ATAGCACAGAAATAGAATGA+AGG | 0.580450 | 6.1:+60538085 | None:intergenic |
GATGACACGTATGATGCATA+CGG | 0.587584 | 6.1:-60536834 | MS.gene042750:CDS |
TAAGAAGTCGTAGCCAACAC+CGG | 0.589439 | 6.1:+60535729 | None:intergenic |
AAGAAGTCGTAGCCAACACC+GGG | 0.590372 | 6.1:+60535730 | None:intergenic |
ACCAAAGATTCTGAAGCATA+CGG | 0.593001 | 6.1:+60538794 | None:intergenic |
ATTGGGTTGCAATTGACTCA+AGG | 0.594526 | 6.1:+60537308 | None:intergenic |
AACACATCAACAATATCAAG+TGG | 0.595383 | 6.1:-60535756 | MS.gene042750:CDS |
TCTTCATAAACATCCAAGAG+TGG | 0.597368 | 6.1:+60536458 | None:intergenic |
ACATTGATCATAGATGTTGA+GGG | 0.599537 | 6.1:-60537415 | MS.gene042750:CDS |
TTTCCACCCTAGCGTTTGGG+GGG | 0.604138 | 6.1:-60538828 | MS.gene042750:CDS |
TAATGAAATTCTACTTACGT+TGG | 0.604203 | 6.1:-60537170 | MS.gene042750:CDS |
AACCAATTCAAGGACAAGCA+AGG | 0.604565 | 6.1:-60537451 | MS.gene042750:CDS |
CTTTATATATAGGTGGTGGA+AGG | 0.614852 | 6.1:-60537000 | MS.gene042750:intron |
ATTTCCACCCTAGCGTTTGG+GGG | 0.619288 | 6.1:-60538829 | MS.gene042750:CDS |
TTACAACAAAATCTACCCCA+TGG | 0.630347 | 6.1:-60523684 | MS.gene042750:CDS |
ACCATGAATCATCATATGTG+AGG | 0.641340 | 6.1:+60537372 | None:intergenic |
AATTGATAAACTAAAAGAGG+AGG | 0.642973 | 6.1:-60538277 | MS.gene042750:CDS |
ATAGTTAACATTCAACCACC+TGG | 0.654774 | 6.1:+60535803 | None:intergenic |
GGATGAAATTGTGTCTAGCG+AGG | 0.663791 | 6.1:-60535610 | MS.gene042750:intron |
AGTCCAAGCTTACATGAGTG+AGG | 0.665674 | 6.1:-60535826 | MS.gene042750:CDS |
CTTACATGAGTGAGGCCAGG+TGG | 0.678940 | 6.1:-60535818 | MS.gene042750:CDS |
TAACTATATACCAACAACAG+AGG | 0.706002 | 6.1:-60535787 | MS.gene042750:CDS |
CAGATATATGATATTCCATG+GGG | 0.710877 | 6.1:+60523669 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 60523529 | 60538912 | 60523529 | ID=MS.gene042750 |
chr6.1 | mRNA | 60523529 | 60538912 | 60523529 | ID=MS.gene042750.t1;Parent=MS.gene042750 |
chr6.1 | exon | 60538796 | 60538912 | 60538796 | ID=MS.gene042750.t1.exon1;Parent=MS.gene042750.t1 |
chr6.1 | CDS | 60538796 | 60538912 | 60538796 | ID=cds.MS.gene042750.t1;Parent=MS.gene042750.t1 |
chr6.1 | exon | 60538046 | 60538325 | 60538046 | ID=MS.gene042750.t1.exon2;Parent=MS.gene042750.t1 |
chr6.1 | CDS | 60538046 | 60538325 | 60538046 | ID=cds.MS.gene042750.t1;Parent=MS.gene042750.t1 |
chr6.1 | exon | 60537109 | 60537481 | 60537109 | ID=MS.gene042750.t1.exon3;Parent=MS.gene042750.t1 |
chr6.1 | CDS | 60537109 | 60537481 | 60537109 | ID=cds.MS.gene042750.t1;Parent=MS.gene042750.t1 |
chr6.1 | exon | 60536792 | 60537010 | 60536792 | ID=MS.gene042750.t1.exon4;Parent=MS.gene042750.t1 |
chr6.1 | CDS | 60536792 | 60537010 | 60536792 | ID=cds.MS.gene042750.t1;Parent=MS.gene042750.t1 |
chr6.1 | exon | 60536397 | 60536535 | 60536397 | ID=MS.gene042750.t1.exon5;Parent=MS.gene042750.t1 |
chr6.1 | CDS | 60536397 | 60536535 | 60536397 | ID=cds.MS.gene042750.t1;Parent=MS.gene042750.t1 |
chr6.1 | exon | 60535611 | 60535859 | 60535611 | ID=MS.gene042750.t1.exon6;Parent=MS.gene042750.t1 |
chr6.1 | CDS | 60535611 | 60535859 | 60535611 | ID=cds.MS.gene042750.t1;Parent=MS.gene042750.t1 |
chr6.1 | exon | 60523529 | 60523714 | 60523529 | ID=MS.gene042750.t1.exon7;Parent=MS.gene042750.t1 |
chr6.1 | CDS | 60523529 | 60523714 | 60523529 | ID=cds.MS.gene042750.t1;Parent=MS.gene042750.t1 |
Gene Sequence |
Protein sequence |