AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042752

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042752.t1 MTR_6g039440 69.217 549 169 0 1 549 4 552 0.0 814
MS.gene042752.t1 MTR_5g062230 70.556 540 159 0 10 549 13 552 0.0 804
MS.gene042752.t1 MTR_6g008560 68.306 549 173 1 2 549 8 556 0.0 804
MS.gene042752.t1 MTR_4g048460 69.301 544 167 0 6 549 17 560 0.0 793
MS.gene042752.t1 MTR_3g464190 66.849 549 181 1 1 548 7 555 0.0 777
MS.gene042752.t1 MTR_5g073200 66.176 544 183 1 6 548 4 547 0.0 746
MS.gene042752.t1 MTR_5g073260 64.610 551 193 2 1 549 1 551 0.0 744
MS.gene042752.t1 MTR_5g094620 63.971 544 177 2 6 549 12 536 0.0 736
MS.gene042752.t1 MTR_4g081460 58.212 548 226 2 4 549 15 561 0.0 668
MS.gene042752.t1 MTR_4g048460 68.750 448 140 0 6 453 17 464 0.0 639
MS.gene042752.t1 MTR_6g008560 68.250 400 127 0 150 549 1 400 0.0 593
MS.gene042752.t1 MTR_2g082010 45.055 546 294 6 7 548 23 566 1.18e-175 508
MS.gene042752.t1 MTR_2g081980 45.055 546 292 7 9 548 12 555 2.88e-173 501
MS.gene042752.t1 MTR_8g007515 45.803 548 289 6 7 548 9 554 2.18e-170 494
MS.gene042752.t1 MTR_2g082060 43.956 546 287 8 9 548 19 551 3.76e-162 473
MS.gene042752.t1 MTR_4g019550 41.742 551 297 8 9 548 19 556 4.69e-145 429
MS.gene042752.t1 MTR_2g082050 40.237 507 244 8 47 550 9 459 6.21e-127 379
MS.gene042752.t1 MTR_4g045810 34.615 546 346 4 7 548 41 579 4.56e-114 350
MS.gene042752.t1 MTR_2g089120 36.117 515 306 9 43 550 67 565 2.46e-108 335
MS.gene042752.t1 MTR_2g064425 36.464 543 331 9 11 549 53 585 1.53e-107 334
MS.gene042752.t1 MTR_2g089130 34.638 511 316 6 43 549 67 563 1.11e-105 328
MS.gene042752.t1 MTR_8g057020 33.515 549 356 5 3 549 47 588 1.70e-100 316
MS.gene042752.t1 MTR_2g064425 34.807 543 325 10 11 549 53 570 2.51e-97 307
MS.gene042752.t1 MTR_2g065450 32.668 551 358 6 2 549 49 589 6.98e-96 303
MS.gene042752.t1 MTR_7g010710 31.159 552 369 7 1 547 7 552 2.06e-87 280
MS.gene042752.t1 MTR_2g064425 43.251 363 194 7 11 370 53 406 3.18e-87 276
MS.gene042752.t1 MTR_4g092020 32.233 515 336 6 38 548 64 569 3.34e-86 278
MS.gene042752.t1 MTR_4g092010 30.952 546 365 9 2 542 18 556 2.72e-85 275
MS.gene042752.t1 MTR_7g057340 67.251 171 56 0 379 549 1 171 2.12e-83 257
MS.gene042752.t1 MTR_7g057390 66.082 171 55 1 379 549 1 168 2.53e-78 244
MS.gene042752.t1 MTR_5g094530 58.904 219 52 4 160 375 1 184 3.86e-77 241
MS.gene042752.t1 MTR_2g064425 40.771 363 188 8 11 370 53 391 5.71e-77 249
MS.gene042752.t1 MTR_2g010960 29.658 526 341 10 36 541 2 518 7.98e-76 249
MS.gene042752.t1 MTR_6g064980 30.400 500 323 9 48 532 13 502 3.58e-71 237
MS.gene042752.t1 MTR_3g063170 29.175 497 338 8 36 523 2 493 1.36e-68 230
MS.gene042752.t1 MTR_3g465090 29.283 502 341 7 36 528 2 498 4.77e-68 229
MS.gene042752.t1 MTR_3g063140 29.331 508 333 9 36 528 2 498 2.65e-67 227
MS.gene042752.t1 MTR_3g063120 28.947 494 324 9 67 544 6 488 3.99e-66 223
MS.gene042752.t1 MTR_3g052120 29.412 510 337 9 48 544 13 512 5.20e-64 218
MS.gene042752.t1 MTR_7g050990 61.446 166 53 2 193 358 27 181 1.16e-58 210
MS.gene042752.t1 MTR_6g065040 28.889 405 270 7 132 528 2 396 1.31e-54 190
MS.gene042752.t1 MTR_3g015080 45.614 171 55 2 379 549 1 133 2.22e-43 151
MS.gene042752.t1 MTR_3g063160 31.081 296 186 6 36 322 2 288 4.87e-37 139
MS.gene042752.t1 MTR_2g012870 24.433 573 393 16 4 548 194 754 3.26e-34 138
MS.gene042752.t1 MTR_3g058160 25.430 523 334 17 64 548 65 569 6.27e-33 133
MS.gene042752.t1 MTR_2g064295 24.225 516 349 15 64 548 256 760 7.83e-33 134
MS.gene042752.t1 MTR_3g058160 25.430 523 334 17 64 548 269 773 1.23e-32 133
MS.gene042752.t1 MTR_3g058160 25.430 523 334 17 64 548 256 760 1.26e-32 133
MS.gene042752.t1 MTR_3g058160 25.430 523 334 17 64 548 276 780 1.87e-32 132
MS.gene042752.t1 MTR_2g012900 24.952 517 337 17 4 480 194 699 1.77e-31 130
MS.gene042752.t1 MTR_3g058160 24.816 544 332 18 64 548 276 801 4.81e-30 125
MS.gene042752.t1 MTR_7g094970 28.625 269 162 7 67 307 211 477 2.99e-25 110
MS.gene042752.t1 MTR_7g011663 30.741 270 153 7 67 304 349 616 1.61e-24 108
MS.gene042752.t1 MTR_5g030050 30.189 265 150 8 67 306 3 257 7.52e-24 102
MS.gene042752.t1 MTR_7g011770 29.897 291 173 8 67 328 245 533 4.07e-22 100
MS.gene042752.t1 MTR_5g081730 37.273 110 64 1 147 251 2 111 1.29e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042752.t1 AT5G23960 40.110 546 320 5 7 549 3 544 4.94e-151 444
MS.gene042752.t1 AT5G23960 40.146 548 319 6 7 549 3 546 5.48e-150 442
MS.gene042752.t1 AT1G70080 38.278 546 327 7 11 548 66 609 8.77e-127 384
MS.gene042752.t1 AT3G14490 37.912 546 327 7 11 549 60 600 6.85e-122 371
MS.gene042752.t1 AT3G14520 36.735 539 333 5 16 549 68 603 1.55e-121 370
MS.gene042752.t1 AT1G31950 36.111 540 335 5 16 549 70 605 3.43e-120 367
MS.gene042752.t1 AT3G14540 36.920 539 332 4 16 549 65 600 1.20e-119 365
MS.gene042752.t1 AT1G31950 36.044 541 335 6 16 549 70 606 1.23e-119 366
MS.gene042752.t1 AT5G44630 35.963 545 338 6 12 548 14 555 1.35e-114 351
MS.gene042752.t1 AT1G33750 34.831 534 342 4 18 549 73 602 2.38e-113 349
MS.gene042752.t1 AT3G32030 35.065 539 342 6 16 549 68 603 6.15e-113 348
MS.gene042752.t1 AT4G13300 36.872 537 328 7 19 548 20 552 1.06e-111 343
MS.gene042752.t1 AT3G29410 34.807 543 346 6 11 549 64 602 2.17e-111 344
MS.gene042752.t1 AT4G20210 34.799 546 343 7 11 548 58 598 9.84e-111 343
MS.gene042752.t1 AT4G15870 34.838 554 335 9 3 548 61 596 3.91e-108 336
MS.gene042752.t1 AT3G29190 34.766 535 323 9 32 549 75 600 6.04e-108 335
MS.gene042752.t1 AT4G20200 35.907 518 314 9 42 548 92 602 7.95e-108 335
MS.gene042752.t1 AT4G13280 36.075 535 331 7 21 548 22 552 1.83e-105 327
MS.gene042752.t1 AT3G29410 35.000 500 319 4 53 549 1 497 2.79e-105 325
MS.gene042752.t1 AT4G20230 33.641 541 337 9 19 546 70 601 2.06e-100 316
MS.gene042752.t1 AT4G20230 33.641 541 337 9 19 546 82 613 4.23e-100 315
MS.gene042752.t1 AT3G14540 37.444 446 272 3 16 457 65 507 4.49e-100 312
MS.gene042752.t1 AT1G31950 36.105 457 281 6 16 465 70 522 8.93e-100 312
MS.gene042752.t1 AT4G16730 31.608 541 353 7 22 549 2 538 1.41e-98 309
MS.gene042752.t1 AT3G29110 34.615 546 344 9 11 548 55 595 6.53e-98 309
MS.gene042752.t1 AT2G23230 33.700 546 347 9 10 545 55 595 4.49e-97 307
MS.gene042752.t1 AT1G66020 32.721 544 357 6 11 548 56 596 3.49e-95 302
MS.gene042752.t1 AT4G16730 32.121 495 321 5 67 549 1 492 6.33e-95 298
MS.gene042752.t1 AT2G23230 33.516 546 343 10 10 545 55 590 2.53e-94 300
MS.gene042752.t1 AT4G13280 34.953 535 307 9 21 548 22 522 2.80e-94 298
MS.gene042752.t1 AT1G48800 31.319 546 359 9 11 546 63 602 5.99e-92 294
MS.gene042752.t1 AT4G16740 31.532 555 357 10 6 549 21 563 2.69e-90 288
MS.gene042752.t1 AT2G24210 31.362 558 364 9 4 549 39 589 5.94e-90 288
MS.gene042752.t1 AT1G61680 31.893 486 321 3 48 528 77 557 2.49e-87 281
MS.gene042752.t1 AT3G25830 31.362 558 357 12 9 549 45 593 3.18e-87 281
MS.gene042752.t1 AT3G25820 31.362 558 357 12 9 549 45 593 3.18e-87 281
MS.gene042752.t1 AT3G25810 32.937 504 317 9 62 549 98 596 2.30e-86 279
MS.gene042752.t1 AT1G61680 31.481 486 316 4 48 528 77 550 5.69e-84 272
MS.gene042752.t1 AT5G48110 37.647 340 207 5 210 548 2 337 3.73e-83 263
MS.gene042752.t1 AT1G48820 30.983 539 322 11 11 543 63 557 7.40e-81 264
MS.gene042752.t1 AT4G16740 34.933 375 225 7 6 370 21 386 1.04e-69 229
MS.gene042752.t1 AT1G66020 34.688 369 232 6 11 373 56 421 7.88e-66 220
MS.gene042752.t1 AT3G25820 32.642 386 241 8 9 383 45 422 3.94e-65 219
MS.gene042752.t1 AT4G16740 35.562 329 194 6 6 324 21 341 1.62e-61 207
MS.gene042752.t1 AT4G16740 35.562 329 194 6 6 324 21 341 1.62e-61 207
MS.gene042752.t1 AT3G25820 33.945 327 197 8 9 324 45 363 7.70e-56 193
MS.gene042752.t1 AT3G25820 33.945 327 197 8 9 324 45 363 7.70e-56 193
MS.gene042752.t1 AT1G61120 24.319 514 345 13 62 548 286 782 1.44e-29 124
MS.gene042752.t1 AT1G79460 23.314 519 349 19 64 548 274 777 1.90e-26 114
MS.gene042752.t1 AT4G02780 30.469 256 148 7 67 294 334 587 4.18e-23 104

Find 93 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6.1:-60817893 MS.gene042752:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6.1:-60818887 MS.gene042752:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6.1:-60818886 MS.gene042752:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6.1:-60816381 MS.gene042752:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6.1:-60817853 MS.gene042752:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6.1:+60817905 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6.1:-60818091 MS.gene042752:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6.1:-60819898 MS.gene042752:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6.1:+60817583 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6.1:-60816387 MS.gene042752:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6.1:-60819935 MS.gene042752:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6.1:-60819934 MS.gene042752:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6.1:-60818967 MS.gene042752:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6.1:+60818181 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6.1:-60817253 MS.gene042752:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6.1:-60817670 MS.gene042752:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6.1:-60816029 MS.gene042752:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6.1:+60816435 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6.1:-60816380 MS.gene042752:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6.1:-60816435 MS.gene042752:CDS
TTCATGTATTCCTCTGTTGT+TGG 0.377218 6.1:+60816526 None:intergenic
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6.1:+60817906 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6.1:+60815929 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6.1:-60817265 MS.gene042752:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6.1:+60817927 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6.1:-60819009 MS.gene042752:CDS
CATACTTGGAATGTTATATG+AGG 0.398446 6.1:-60816042 MS.gene042752:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6.1:-60816056 MS.gene042752:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6.1:-60815952 MS.gene042752:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6.1:+60818022 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6.1:-60815979 MS.gene042752:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6.1:+60817234 None:intergenic
GCAAATTGATAAACTAAAAC+AGG 0.437343 6.1:-60819087 MS.gene042752:CDS
GTTTCTCTATAAACCACTCT+TGG 0.439981 6.1:-60817220 MS.gene042752:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6.1:-60817860 MS.gene042752:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6.1:-60816467 MS.gene042752:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6.1:-60816434 MS.gene042752:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6.1:+60817686 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6.1:-60816466 MS.gene042752:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6.1:+60817626 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6.1:-60818105 MS.gene042752:CDS
ATTGACTCAATATGTCGTTT+GGG 0.473862 6.1:-60819008 MS.gene042752:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6.1:+60815785 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6.1:-60818193 MS.gene042752:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6.1:-60817180 MS.gene042752:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6.1:+60818023 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6.1:+60815786 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6.1:-60818148 MS.gene042752:CDS
AACAATATCAAGTGGTTACC+CGG 0.513550 6.1:-60816497 MS.gene042752:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6.1:+60815791 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6.1:-60818852 MS.gene042752:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6.1:-60817726 MS.gene042752:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6.1:-60817628 MS.gene042752:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6.1:-60818878 MS.gene042752:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6.1:+60815790 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6.1:+60816572 None:intergenic
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6.1:-60816491 MS.gene042752:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6.1:-60819933 MS.gene042752:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6.1:-60817618 MS.gene042752:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6.1:+60817955 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6.1:-60816041 MS.gene042752:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6.1:+60815817 None:intergenic
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6.1:+60818012 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6.1:-60819111 MS.gene042752:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6.1:-60818006 MS.gene042752:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6.1:-60818870 MS.gene042752:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6.1:-60818918 MS.gene042752:CDS
TTGGCTACGACTTCTTACAT+TGG 0.575246 6.1:-60816472 MS.gene042752:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6.1:-60816570 MS.gene042752:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6.1:+60818892 None:intergenic
GATGACACGTATGATGCATA+CGG 0.587584 6.1:-60817566 MS.gene042752:CDS
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6.1:+60816478 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6.1:+60816479 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6.1:+60819897 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6.1:+60818040 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6.1:-60816505 MS.gene042752:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6.1:+60817207 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.599537 6.1:-60818147 MS.gene042752:CDS
GACAACTACACACATTCTGA+AGG 0.603730 6.1:-60815851 MS.gene042752:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6.1:-60819931 MS.gene042752:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6.1:-60817902 MS.gene042752:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6.1:-60818183 MS.gene042752:CDS
CTTTATATATAGGTGGTGGA+AGG 0.614852 6.1:-60817732 MS.gene042752:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6.1:-60819932 MS.gene042752:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6.1:+60815888 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6.1:-60815963 MS.gene042752:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6.1:+60818104 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6.1:+60816552 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6.1:-60816359 MS.gene042752:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6.1:-60816575 MS.gene042752:CDS
AATTGATAAACTAAAACAGG+AGG 0.674763 6.1:-60819084 MS.gene042752:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6.1:-60816567 MS.gene042752:CDS
TAACTATATACCAACAACAG+AGG 0.696944 6.1:-60816536 MS.gene042752:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG - chr6.1:60816142-60816161 MS.gene042752:intron 10.0%
!! TTGAAAATATATATATTACA+AGG + chr6.1:60816535-60816554 None:intergenic 10.0%
!! TTTAAAAGAAGATTATATAT+TGG - chr6.1:60819034-60819053 MS.gene042752:CDS 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6.1:60817978-60817997 None:intergenic 10.0%
!!! ATTAAATAATAACTTTTAGA+TGG - chr6.1:60818370-60818389 MS.gene042752:intron 10.0%
!!! ATTATATTTTTGATATCATT+AGG - chr6.1:60817368-60817387 MS.gene042752:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6.1:60817977-60817996 None:intergenic 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6.1:60818490-60818509 MS.gene042752:intron 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6.1:60818433-60818452 MS.gene042752:intron 10.0%
!! AATATAATAAGATGACATAA+TGG - chr6.1:60819590-60819609 MS.gene042752:intron 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6.1:60819153-60819172 None:intergenic 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6.1:60818028-60818047 None:intergenic 15.0%
!! GAATCATTAATATTAATAAG+TGG + chr6.1:60816959-60816978 None:intergenic 15.0%
!! TATATTATGAAAAGTGATTA+AGG - chr6.1:60816233-60816252 MS.gene042752:intron 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6.1:60819579-60819598 None:intergenic 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6.1:60817097-60817116 MS.gene042752:intron 15.0%
!!! ATGATTGATTTACATAAAAT+AGG - chr6.1:60817255-60817274 MS.gene042752:CDS 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6.1:60817127-60817146 MS.gene042752:intron 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6.1:60817096-60817115 MS.gene042752:intron 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6.1:60818032-60818051 MS.gene042752:CDS 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6.1:60818742-60818761 MS.gene042752:intron 15.0%
!! AAATAAAACCAAGAGAAAAT+AGG - chr6.1:60816293-60816312 MS.gene042752:intron 20.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6.1:60817452-60817471 None:intergenic 20.0%
!! ATGTGTAATAATATCTATGT+TGG + chr6.1:60816419-60816438 None:intergenic 20.0%
!! CATATTTACCAAAAATACAT+AGG - chr6.1:60819112-60819131 MS.gene042752:CDS 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6.1:60816663-60816682 MS.gene042752:intron 20.0%
!! TTGATTTACATAAAATAGGA+AGG - chr6.1:60817259-60817278 MS.gene042752:CDS 20.0%
!! TTGTTCACGTAAAAAAAAAA+GGG + chr6.1:60815915-60815934 None:intergenic 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6.1:60818494-60818513 MS.gene042752:intron 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6.1:60816595-60816614 None:intergenic 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6.1:60817139-60817158 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6.1:60819506-60819525 MS.gene042752:intron 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6.1:60817098-60817117 MS.gene042752:intron 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6.1:60818018-60818037 MS.gene042752:CDS 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6.1:60818305-60818324 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6.1:60818493-60818512 MS.gene042752:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6.1:60819072-60819091 None:intergenic 20.0%
! AATTGATAAACTAAAACAGG+AGG - chr6.1:60816690-60816709 MS.gene042752:intron 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6.1:60817872-60817891 None:intergenic 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6.1:60819733-60819752 MS.gene042752:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6.1:60819822-60819841 MS.gene042752:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6.1:60819340-60819359 MS.gene042752:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6.1:60817871-60817890 None:intergenic 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6.1:60817165-60817184 None:intergenic 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6.1:60818788-60818807 None:intergenic 25.0%
! GCAAATTGATAAACTAAAAC+AGG - chr6.1:60816687-60816706 MS.gene042752:intron 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6.1:60816479-60816498 None:intergenic 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6.1:60816563-60816582 None:intergenic 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6.1:60818194-60818213 None:intergenic 25.0%
! GTTGTTCACGTAAAAAAAAA+AGG + chr6.1:60815916-60815935 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6.1:60817872-60817891 MS.gene042752:CDS 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6.1:60819745-60819764 MS.gene042752:intron 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6.1:60816550-60816569 MS.gene042752:CDS 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6.1:60816807-60816826 MS.gene042752:intron 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6.1:60818240-60818259 MS.gene042752:intron 25.0%
!! TTGTGATCAGAACATTTTTA+GGG - chr6.1:60818818-60818837 MS.gene042752:intron 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6.1:60818251-60818270 MS.gene042752:intron 25.0%
!!! ATCAAGTTGACTTTTTTCAA+CGG + chr6.1:60816748-60816767 None:intergenic 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6.1:60816887-60816906 MS.gene042752:intron 25.0%
!!! TATTTTTGATATCATTAGGC+CGG - chr6.1:60817372-60817391 MS.gene042752:intron 25.0%
!!! TCTTACTTCTTTTAAGAAGT+GGG + chr6.1:60818637-60818656 None:intergenic 25.0%
!!! TTCATGTTTTGATTACATAC+AGG - chr6.1:60816642-60816661 MS.gene042752:intron 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6.1:60816888-60816907 MS.gene042752:intron 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6.1:60818035-60818054 MS.gene042752:CDS 25.0%
AACACATCAACAATATCAAG+TGG - chr6.1:60819269-60819288 MS.gene042752:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6.1:60817626-60817645 MS.gene042752:CDS 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6.1:60817414-60817433 None:intergenic 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6.1:60816856-60816875 MS.gene042752:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6.1:60817627-60817646 MS.gene042752:CDS 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6.1:60817581-60817600 MS.gene042752:CDS 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6.1:60816885-60816904 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr6.1:60815997-60816016 None:intergenic 30.0%
ATTTCACGCAATATTCTTTG+TGG - chr6.1:60819463-60819482 MS.gene042752:intron 30.0%
CATAACATTACACGGATAAT+GGG + chr6.1:60817316-60817335 None:intergenic 30.0%
CATACTTGGAATGTTATATG+AGG - chr6.1:60819732-60819751 MS.gene042752:intron 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6.1:60819342-60819361 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6.1:60819339-60819358 MS.gene042752:intron 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6.1:60818077-60818096 MS.gene042752:CDS 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6.1:60819960-60819979 None:intergenic 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6.1:60818078-60818097 MS.gene042752:CDS 30.0%
TAACTATATACCAACAACAG+AGG - chr6.1:60819238-60819257 MS.gene042752:intron 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6.1:60816943-60816962 None:intergenic 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6.1:60818543-60818562 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6.1:60819811-60819830 MS.gene042752:intron 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6.1:60816452-60816471 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6.1:60817007-60817026 MS.gene042752:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6.1:60819848-60819867 None:intergenic 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6.1:60816766-60816785 MS.gene042752:intron 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6.1:60817972-60817991 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6.1:60816838-60816857 MS.gene042752:intron 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6.1:60816840-60816859 None:intergenic 30.0%
! CTTGTGATCAGAACATTTTT+AGG - chr6.1:60818817-60818836 MS.gene042752:intron 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6.1:60817683-60817702 MS.gene042752:CDS 30.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6.1:60816342-60816361 MS.gene042752:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6.1:60816382-60816401 MS.gene042752:CDS 30.0%
! TCCTTTTTCCTCAAAAATGT+TGG + chr6.1:60816393-60816412 None:intergenic 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6.1:60817926-60817945 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6.1:60818638-60818657 None:intergenic 30.0%
!! CTTGGACATCTATTTTGAAA+CGG - chr6.1:60816200-60816219 MS.gene042752:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6.1:60817303-60817322 None:intergenic 30.0%
!! TCCAACATTTTTGAGGAAAA+AGG - chr6.1:60816389-60816408 MS.gene042752:CDS 30.0%
!! TGTGATCAGAACATTTTTAG+GGG - chr6.1:60818819-60818838 MS.gene042752:intron 30.0%
!! TTCTTTTAAGAAGTGGGTAA+TGG + chr6.1:60818631-60818650 None:intergenic 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6.1:60818105-60818124 MS.gene042752:CDS 30.0%
!!! GACATGTATTTTGAAACAGA+GGG + chr6.1:60815975-60815994 None:intergenic 30.0%
AAAATAGGAAGGATCATCGT+AGG - chr6.1:60817270-60817289 MS.gene042752:intron 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6.1:60819698-60819717 MS.gene042752:intron 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6.1:60819889-60819908 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6.1:60819277-60819296 MS.gene042752:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6.1:60819860-60819879 None:intergenic 35.0%
ACCATGAATCATCATATGTG+AGG + chr6.1:60817673-60817692 None:intergenic 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6.1:60819308-60819327 MS.gene042752:intron 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6.1:60817921-60817940 MS.gene042752:CDS 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6.1:60817402-60817421 MS.gene042752:intron 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6.1:60819225-60819244 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6.1:60817540-60817559 MS.gene042752:CDS 35.0%
CCAAAAATACATAGGAGTTC+AGG - chr6.1:60819120-60819139 MS.gene042752:intron 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6.1:60816338-60816357 None:intergenic 35.0%
GAACAGAGCATAACATTACA+CGG + chr6.1:60817324-60817343 None:intergenic 35.0%
GCATAACATTACACGGATAA+TGG + chr6.1:60817317-60817336 None:intergenic 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6.1:60818554-60818573 MS.gene042752:intron 35.0%
TAACGGTCAAAATTGTGCAT+TGG - chr6.1:60816159-60816178 MS.gene042752:intron 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6.1:60817402-60817421 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6.1:60819307-60819326 MS.gene042752:intron 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6.1:60818509-60818528 MS.gene042752:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6.1:60818521-60818540 MS.gene042752:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6.1:60817881-60817900 MS.gene042752:CDS 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6.1:60818570-60818589 None:intergenic 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6.1:60818038-60818057 MS.gene042752:CDS 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6.1:60816354-60816373 MS.gene042752:intron 35.0%
TTCATGTATTCCTCTGTTGT+TGG + chr6.1:60819251-60819270 None:intergenic 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6.1:60818151-60818170 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6.1:60818156-60818175 MS.gene042752:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6.1:60817920-60817939 None:intergenic 35.0%
! CCTGAACTCCTATGTATTTT+TGG + chr6.1:60819123-60819142 None:intergenic 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6.1:60816765-60816784 MS.gene042752:intron 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6.1:60819377-60819396 None:intergenic 35.0%
! TTCTGATCACAAGATTTGCT+AGG + chr6.1:60818810-60818829 None:intergenic 35.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6.1:60815880-60815899 None:intergenic 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6.1:60818042-60818061 MS.gene042752:CDS 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6.1:60817695-60817714 MS.gene042752:CDS 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6.1:60817433-60817452 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6.1:60816304-60816323 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6.1:60817689-60817708 MS.gene042752:CDS 35.0%
!!! AGTTTTGGAAGATATCCACA+AGG - chr6.1:60816822-60816841 MS.gene042752:intron 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6.1:60818114-60818133 MS.gene042752:CDS 35.0%
!!! GACATCTATTTTGAAACGGA+GGG - chr6.1:60816204-60816223 MS.gene042752:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6.1:60818104-60818123 MS.gene042752:CDS 35.0%
!!! GGACATGTATTTTGAAACAG+AGG + chr6.1:60815976-60815995 None:intergenic 35.0%
AACCAATTCAAGGACAAGCA+AGG - chr6.1:60817591-60817610 MS.gene042752:CDS 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6.1:60816488-60816507 MS.gene042752:CDS 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6.1:60818146-60818165 MS.gene042752:CDS 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6.1:60816319-60816338 MS.gene042752:intron 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr6.1:60816182-60816201 MS.gene042752:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6.1:60816489-60816508 MS.gene042752:CDS 40.0%
GACAACTACACACATTCTGA+AGG - chr6.1:60819923-60819942 MS.gene042752:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6.1:60818594-60818613 MS.gene042752:intron 40.0%
GATGACACGTATGATGCATA+CGG - chr6.1:60818208-60818227 MS.gene042752:intron 40.0%
GCCTCACATATGATGATTCA+TGG - chr6.1:60817669-60817688 MS.gene042752:CDS 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6.1:60816320-60816339 MS.gene042752:intron 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6.1:60817850-60817869 None:intergenic 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6.1:60818781-60818800 None:intergenic 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6.1:60816507-60816526 None:intergenic 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6.1:60816375-60816394 None:intergenic 40.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6.1:60815876-60815895 MS.gene042752:CDS 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6.1:60816448-60816467 None:intergenic 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6.1:60817596-60817615 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6.1:60819302-60819321 MS.gene042752:intron 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6.1:60819718-60819737 MS.gene042752:intron 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6.1:60817385-60817404 MS.gene042752:intron 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6.1:60817737-60817756 None:intergenic 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6.1:60816363-60816382 MS.gene042752:CDS 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6.1:60819883-60819902 MS.gene042752:intron 40.0%
!!! GGACATCTATTTTGAAACGG+AGG - chr6.1:60816203-60816222 MS.gene042752:intron 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6.1:60815840-60815859 MS.gene042752:CDS 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6.1:60817275-60817294 MS.gene042752:intron 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6.1:60819199-60819218 MS.gene042752:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6.1:60817809-60817828 MS.gene042752:intron 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6.1:60816922-60816941 MS.gene042752:intron 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6.1:60817754-60817773 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6.1:60817768-60817787 MS.gene042752:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6.1:60817914-60817933 MS.gene042752:CDS 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6.1:60819415-60819434 MS.gene042752:intron 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6.1:60819299-60819318 None:intergenic 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6.1:60816324-60816343 MS.gene042752:intron 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6.1:60817755-60817774 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6.1:60819394-60819413 MS.gene042752:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6.1:60817394-60817413 None:intergenic 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6.1:60817384-60817403 MS.gene042752:intron 45.0%
! GTGCATTGGCATATGTGAAG+TGG - chr6.1:60816173-60816192 MS.gene042752:intron 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6.1:60818048-60818067 MS.gene042752:CDS 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6.1:60816896-60816915 MS.gene042752:intron 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6.1:60817765-60817784 None:intergenic 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6.1:60816904-60816923 MS.gene042752:intron 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6.1:60817708-60817727 MS.gene042752:CDS 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6.1:60816977-60816996 MS.gene042752:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6.1:60817981-60818000 None:intergenic 5.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6.1:60819298-60819317 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6.1:60819204-60819223 MS.gene042752:intron 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6.1:60818091-60818110 None:intergenic 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6.1:60819283-60819302 MS.gene042752:intron 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6.1:60819387-60819406 MS.gene042752:intron 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6.1:60815842-60815861 MS.gene042752:CDS 50.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6.1:60815839-60815858 MS.gene042752:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6.1:60816436-60816455 MS.gene042752:CDS 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6.1:60817802-60817821 MS.gene042752:intron 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6.1:60819393-60819412 MS.gene042752:intron 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6.1:60815841-60815860 MS.gene042752:CDS 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6.1:60817822-60817841 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6.1:60819205-60819224 None:intergenic 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6.1:60817804-60817823 None:intergenic 50.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6.1:60815853-60815872 None:intergenic 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6.1:60815852-60815871 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6.1:60819207-60819226 MS.gene042752:intron 55.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6.1:60815843-60815862 MS.gene042752:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6.1:60815849-60815868 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 60815799 60819997 60815799 ID=MS.gene042752
chr6.1 mRNA 60815799 60819997 60815799 ID=MS.gene042752.t1;Parent=MS.gene042752
chr6.1 exon 60819899 60819997 60819899 ID=MS.gene042752.t1.exon1;Parent=MS.gene042752.t1
chr6.1 CDS 60819899 60819997 60819899 ID=cds.MS.gene042752.t1;Parent=MS.gene042752.t1
chr6.1 exon 60818853 60819132 60818853 ID=MS.gene042752.t1.exon2;Parent=MS.gene042752.t1
chr6.1 CDS 60818853 60819132 60818853 ID=cds.MS.gene042752.t1;Parent=MS.gene042752.t1
chr6.1 exon 60817841 60818213 60817841 ID=MS.gene042752.t1.exon3;Parent=MS.gene042752.t1
chr6.1 CDS 60817841 60818213 60817841 ID=cds.MS.gene042752.t1;Parent=MS.gene042752.t1
chr6.1 exon 60817524 60817742 60817524 ID=MS.gene042752.t1.exon4;Parent=MS.gene042752.t1
chr6.1 CDS 60817524 60817742 60817524 ID=cds.MS.gene042752.t1;Parent=MS.gene042752.t1
chr6.1 exon 60817146 60817284 60817146 ID=MS.gene042752.t1.exon5;Parent=MS.gene042752.t1
chr6.1 CDS 60817146 60817284 60817146 ID=cds.MS.gene042752.t1;Parent=MS.gene042752.t1
chr6.1 exon 60816360 60816608 60816360 ID=MS.gene042752.t1.exon6;Parent=MS.gene042752.t1
chr6.1 CDS 60816360 60816608 60816360 ID=cds.MS.gene042752.t1;Parent=MS.gene042752.t1
chr6.1 exon 60815799 60816092 60815799 ID=MS.gene042752.t1.exon7;Parent=MS.gene042752.t1
chr6.1 CDS 60815799 60816092 60815799 ID=cds.MS.gene042752.t1;Parent=MS.gene042752.t1
Gene Sequence

>MS.gene042752

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGTACGTATAGAATGCCCTTTTTTTTTTACGTGAACAACAATGATTTTTTTTTAAAGATCAACAACAATGATACTCCCTCTGTTTCAAAATACATGTCCAATTTTTGCAATGTGCACTATTCACTTGACTTACTTTGACTATAGTTTTTAATTAATGTATAAATACAAATATTAGCATGTAAGATGTTGTTTGATTTATCTTGACAAATATTTTCAAAATATTAAATTTTTATAATTTTTTACTTTAGATAATTAAAGATATTAACGGTCAAAATTGTGCATTGGCATATGTGAAGTGGTTGACTTGGACATCTATTTTGAAACGGAGGGAGTATATATATTATGAAAAGTGATTAAGGAGTTCTAGAAACACTATCTTTCTCATATTTCACTCTAAAATAAAACCAAGAGAAAATAGGTAGAGCTATAGCAAACACTCCAAAGGGTTGGTTATTTGTTAGCAATAGGAATGAAACCTGGTGTTTTAGGATTTCCAACATTTTTGAGGAAAAAGGATTTCCAACATAGATATTATTACACATTGCACACCAACCACACTTGGATCGTATAATTAATAAACCACTTAATATTACTAACATTGCACACTCCAAAGGGATTCAAGTTACTCACATTTACCTTGTAATATATATATTTTCAAGAATGCCAATAATATAGGATCTTTTGACTAAATGCATCCTTTCAAATAACAATTAAGTGTCATTTATCAATTAATTTTAAAATCATATTCATGTTTTGATTACATACAGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAACAGGAGGTTAGACAAATGCTTGTCTCAAAAATTGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGGTATTTATATCTCCACTTATTAATATTAATGATTCATTTTTTATATTTTAATTTGGATCACTATTGAGTAAAACAAACTTGTGTGGTAGTTTTTAGTTTTTTTTTTTTTTTTTTTAATTCTAATCGTCAAATTAATACTTTAATTTACAACATAATTTTTTAACTTTGATCATGGGGAGTATCTAATATAAACCTCTAAAAAATGGTTTAAGTATAGACCTTTACATTTTTAGTAACAACGAGAGTTTTATAATACTAAAAATTAAAGAATAACATAAGTATTTAACTTTTTCTTGCATTAAAAAAAAAAGATGATTGATTTACATAAAATAGGAAGGATCATCGTAGGATCGGATCCATATTAAACAACCCATTATCCGTGTAATGTTATGCTCTGTTCTTTACATTATTCGCTTTTTACATAATTATATTTTTGATATCATTAGGCCGGTTTACCTATAGGGTAGCCATCTTATTAAGGAAGAACCTTTTTCATACTCTAGAACCACACTATACATTATCTTAATTGCTTATTGAATTTTTTAATCTTGTTTTAGTTTCTTATTTACGTATACTTATAAATTAAAACATCTCTAATGATTGTTCAACATTGTCGTGGTTTTCTAATAAAAATATTAGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTAAGCACTATATCCACACCCTCCTTAATTTAAAATTAAATTGAATTCAAAAACTAACTACTCTAATTGCCTATAATATTTTTGGTCTTTATATATAGGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTTAGCACATCATATAATCAAATAAGCAACCAAAATTTAGAGATAGAAAAACTTGAAATTTATCTGTATTTAAGTATTGAAATTAAGTGATGATAAAATTAAATAATAACTTTTAGATGGTTGCTAATTCTATTTTTTTAAAAGTAAAATAGACTTTTTTTTTTATCATATATTTATACACGGTCTAATTTTGTCAACAAAAGTATAACAATTAATATTATAATGAAAATGAATTTTAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTACCCACTTCTTAAAAGAAGTAAGAGTTTTATTTTATTGATAAAATTTGTTTCTTTTATTGATTTAATTTATTAAACAAACAAACAAATATTTCATTTTCAATTTTATCTTGTTATCAGAATAAAATTTTAGGATTTAATTTGCATCCACTCTCCGTATAGATACATACATAGATCCTAGCAAATCTTGTGATCAGAACATTTTTAGGGGTTTTGTTGAAATTGACATTATAGAGTATCAACATGATGTTATTTGATTGAAAGTATATGTTAAACATATTTATACTATCAATGCATAAAAACTAGTTTAAATAACTTTTTATTAGTTGTTTTATGAACTCAATTTGTAGTAATTACTAGAAGAAATTTTGTTTTGTCAAAATTAGCTTTTTTGTAATTTTAATTTAAAAGAAGATTATATATTGGCAGTTTAATTAACCGTAGATAATAGTTCAACAAAATTTCGAATACAATTTGACATCATATTTACCAAAAATACATAGGAGTTCAGGTACAAAACCTATTAACAATTCTACTATATTTTATAACAATGACAGTTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAATACATGAACACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGGTATTTTTTTTTTATCTAAATATATAATTTCACGCAATATTCTTTGTGGCTAATATATAAGAGATAATTATTGTTCATTTTTGTAAACAAGGTTAACACAACTATTTAAATACAATTTACAATGTTGATATTTTTGTAACCGTCTTAAGAGTTAATATAATAAGATGACATAATGGTGAAATGTGACTTTTACACTGTAACTGCATAGTCATTAAACTATTGATATATCTATTGTATCTCATAGTGTATATATTTTTTGATAAACAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>MS.gene042752.t1

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKQEVRQMLVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAITHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT