AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042753

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042753.t1 MTR_6g039440 69.217 549 169 0 1 549 4 552 0.0 814
MS.gene042753.t1 MTR_5g062230 70.556 540 159 0 10 549 13 552 0.0 804
MS.gene042753.t1 MTR_6g008560 68.306 549 173 1 2 549 8 556 0.0 804
MS.gene042753.t1 MTR_4g048460 69.301 544 167 0 6 549 17 560 0.0 793
MS.gene042753.t1 MTR_3g464190 66.849 549 181 1 1 548 7 555 0.0 777
MS.gene042753.t1 MTR_5g073200 66.176 544 183 1 6 548 4 547 0.0 746
MS.gene042753.t1 MTR_5g073260 64.610 551 193 2 1 549 1 551 0.0 744
MS.gene042753.t1 MTR_5g094620 63.971 544 177 2 6 549 12 536 0.0 736
MS.gene042753.t1 MTR_4g081460 58.212 548 226 2 4 549 15 561 0.0 668
MS.gene042753.t1 MTR_4g048460 68.750 448 140 0 6 453 17 464 0.0 639
MS.gene042753.t1 MTR_6g008560 68.250 400 127 0 150 549 1 400 0.0 593
MS.gene042753.t1 MTR_2g082010 45.055 546 294 6 7 548 23 566 1.18e-175 508
MS.gene042753.t1 MTR_2g081980 45.055 546 292 7 9 548 12 555 2.88e-173 501
MS.gene042753.t1 MTR_8g007515 45.803 548 289 6 7 548 9 554 2.18e-170 494
MS.gene042753.t1 MTR_2g082060 43.956 546 287 8 9 548 19 551 3.76e-162 473
MS.gene042753.t1 MTR_4g019550 41.742 551 297 8 9 548 19 556 4.69e-145 429
MS.gene042753.t1 MTR_2g082050 40.237 507 244 8 47 550 9 459 6.21e-127 379
MS.gene042753.t1 MTR_4g045810 34.615 546 346 4 7 548 41 579 4.56e-114 350
MS.gene042753.t1 MTR_2g089120 36.117 515 306 9 43 550 67 565 2.46e-108 335
MS.gene042753.t1 MTR_2g064425 36.464 543 331 9 11 549 53 585 1.53e-107 334
MS.gene042753.t1 MTR_2g089130 34.638 511 316 6 43 549 67 563 1.11e-105 328
MS.gene042753.t1 MTR_8g057020 33.515 549 356 5 3 549 47 588 1.70e-100 316
MS.gene042753.t1 MTR_2g064425 34.807 543 325 10 11 549 53 570 2.51e-97 307
MS.gene042753.t1 MTR_2g065450 32.668 551 358 6 2 549 49 589 6.98e-96 303
MS.gene042753.t1 MTR_7g010710 31.159 552 369 7 1 547 7 552 2.06e-87 280
MS.gene042753.t1 MTR_2g064425 43.251 363 194 7 11 370 53 406 3.18e-87 276
MS.gene042753.t1 MTR_4g092020 32.233 515 336 6 38 548 64 569 3.34e-86 278
MS.gene042753.t1 MTR_4g092010 30.952 546 365 9 2 542 18 556 2.72e-85 275
MS.gene042753.t1 MTR_7g057340 67.251 171 56 0 379 549 1 171 2.12e-83 257
MS.gene042753.t1 MTR_7g057390 66.082 171 55 1 379 549 1 168 2.53e-78 244
MS.gene042753.t1 MTR_5g094530 58.904 219 52 4 160 375 1 184 3.86e-77 241
MS.gene042753.t1 MTR_2g064425 40.771 363 188 8 11 370 53 391 5.71e-77 249
MS.gene042753.t1 MTR_2g010960 29.658 526 341 10 36 541 2 518 7.98e-76 249
MS.gene042753.t1 MTR_6g064980 30.400 500 323 9 48 532 13 502 3.58e-71 237
MS.gene042753.t1 MTR_3g063170 29.175 497 338 8 36 523 2 493 1.36e-68 230
MS.gene042753.t1 MTR_3g465090 29.283 502 341 7 36 528 2 498 4.77e-68 229
MS.gene042753.t1 MTR_3g063140 29.331 508 333 9 36 528 2 498 2.65e-67 227
MS.gene042753.t1 MTR_3g063120 28.947 494 324 9 67 544 6 488 3.99e-66 223
MS.gene042753.t1 MTR_3g052120 29.412 510 337 9 48 544 13 512 5.20e-64 218
MS.gene042753.t1 MTR_7g050990 61.446 166 53 2 193 358 27 181 1.16e-58 210
MS.gene042753.t1 MTR_6g065040 28.889 405 270 7 132 528 2 396 1.31e-54 190
MS.gene042753.t1 MTR_3g015080 45.614 171 55 2 379 549 1 133 2.22e-43 151
MS.gene042753.t1 MTR_3g063160 31.081 296 186 6 36 322 2 288 4.87e-37 139
MS.gene042753.t1 MTR_2g012870 24.433 573 393 16 4 548 194 754 3.26e-34 138
MS.gene042753.t1 MTR_3g058160 25.430 523 334 17 64 548 65 569 6.27e-33 133
MS.gene042753.t1 MTR_2g064295 24.225 516 349 15 64 548 256 760 7.83e-33 134
MS.gene042753.t1 MTR_3g058160 25.430 523 334 17 64 548 269 773 1.23e-32 133
MS.gene042753.t1 MTR_3g058160 25.430 523 334 17 64 548 256 760 1.26e-32 133
MS.gene042753.t1 MTR_3g058160 25.430 523 334 17 64 548 276 780 1.87e-32 132
MS.gene042753.t1 MTR_2g012900 24.952 517 337 17 4 480 194 699 1.77e-31 130
MS.gene042753.t1 MTR_3g058160 24.816 544 332 18 64 548 276 801 4.81e-30 125
MS.gene042753.t1 MTR_7g094970 28.625 269 162 7 67 307 211 477 2.99e-25 110
MS.gene042753.t1 MTR_7g011663 30.741 270 153 7 67 304 349 616 1.61e-24 108
MS.gene042753.t1 MTR_5g030050 30.189 265 150 8 67 306 3 257 7.52e-24 102
MS.gene042753.t1 MTR_7g011770 29.897 291 173 8 67 328 245 533 4.07e-22 100
MS.gene042753.t1 MTR_5g081730 37.273 110 64 1 147 251 2 111 1.29e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042753.t1 AT5G23960 40.110 546 320 5 7 549 3 544 4.94e-151 444
MS.gene042753.t1 AT5G23960 40.146 548 319 6 7 549 3 546 5.48e-150 442
MS.gene042753.t1 AT1G70080 38.278 546 327 7 11 548 66 609 8.77e-127 384
MS.gene042753.t1 AT3G14490 37.912 546 327 7 11 549 60 600 6.85e-122 371
MS.gene042753.t1 AT3G14520 36.735 539 333 5 16 549 68 603 1.55e-121 370
MS.gene042753.t1 AT1G31950 36.111 540 335 5 16 549 70 605 3.43e-120 367
MS.gene042753.t1 AT3G14540 36.920 539 332 4 16 549 65 600 1.20e-119 365
MS.gene042753.t1 AT1G31950 36.044 541 335 6 16 549 70 606 1.23e-119 366
MS.gene042753.t1 AT5G44630 35.963 545 338 6 12 548 14 555 1.35e-114 351
MS.gene042753.t1 AT1G33750 34.831 534 342 4 18 549 73 602 2.38e-113 349
MS.gene042753.t1 AT3G32030 35.065 539 342 6 16 549 68 603 6.15e-113 348
MS.gene042753.t1 AT4G13300 36.872 537 328 7 19 548 20 552 1.06e-111 343
MS.gene042753.t1 AT3G29410 34.807 543 346 6 11 549 64 602 2.17e-111 344
MS.gene042753.t1 AT4G20210 34.799 546 343 7 11 548 58 598 9.84e-111 343
MS.gene042753.t1 AT4G15870 34.838 554 335 9 3 548 61 596 3.91e-108 336
MS.gene042753.t1 AT3G29190 34.766 535 323 9 32 549 75 600 6.04e-108 335
MS.gene042753.t1 AT4G20200 35.907 518 314 9 42 548 92 602 7.95e-108 335
MS.gene042753.t1 AT4G13280 36.075 535 331 7 21 548 22 552 1.83e-105 327
MS.gene042753.t1 AT3G29410 35.000 500 319 4 53 549 1 497 2.79e-105 325
MS.gene042753.t1 AT4G20230 33.641 541 337 9 19 546 70 601 2.06e-100 316
MS.gene042753.t1 AT4G20230 33.641 541 337 9 19 546 82 613 4.23e-100 315
MS.gene042753.t1 AT3G14540 37.444 446 272 3 16 457 65 507 4.49e-100 312
MS.gene042753.t1 AT1G31950 36.105 457 281 6 16 465 70 522 8.93e-100 312
MS.gene042753.t1 AT4G16730 31.608 541 353 7 22 549 2 538 1.41e-98 309
MS.gene042753.t1 AT3G29110 34.615 546 344 9 11 548 55 595 6.53e-98 309
MS.gene042753.t1 AT2G23230 33.700 546 347 9 10 545 55 595 4.49e-97 307
MS.gene042753.t1 AT1G66020 32.721 544 357 6 11 548 56 596 3.49e-95 302
MS.gene042753.t1 AT4G16730 32.121 495 321 5 67 549 1 492 6.33e-95 298
MS.gene042753.t1 AT2G23230 33.516 546 343 10 10 545 55 590 2.53e-94 300
MS.gene042753.t1 AT4G13280 34.953 535 307 9 21 548 22 522 2.80e-94 298
MS.gene042753.t1 AT1G48800 31.319 546 359 9 11 546 63 602 5.99e-92 294
MS.gene042753.t1 AT4G16740 31.532 555 357 10 6 549 21 563 2.69e-90 288
MS.gene042753.t1 AT2G24210 31.362 558 364 9 4 549 39 589 5.94e-90 288
MS.gene042753.t1 AT1G61680 31.893 486 321 3 48 528 77 557 2.49e-87 281
MS.gene042753.t1 AT3G25830 31.362 558 357 12 9 549 45 593 3.18e-87 281
MS.gene042753.t1 AT3G25820 31.362 558 357 12 9 549 45 593 3.18e-87 281
MS.gene042753.t1 AT3G25810 32.937 504 317 9 62 549 98 596 2.30e-86 279
MS.gene042753.t1 AT1G61680 31.481 486 316 4 48 528 77 550 5.69e-84 272
MS.gene042753.t1 AT5G48110 37.647 340 207 5 210 548 2 337 3.73e-83 263
MS.gene042753.t1 AT1G48820 30.983 539 322 11 11 543 63 557 7.40e-81 264
MS.gene042753.t1 AT4G16740 34.933 375 225 7 6 370 21 386 1.04e-69 229
MS.gene042753.t1 AT1G66020 34.688 369 232 6 11 373 56 421 7.88e-66 220
MS.gene042753.t1 AT3G25820 32.642 386 241 8 9 383 45 422 3.94e-65 219
MS.gene042753.t1 AT4G16740 35.562 329 194 6 6 324 21 341 1.62e-61 207
MS.gene042753.t1 AT4G16740 35.562 329 194 6 6 324 21 341 1.62e-61 207
MS.gene042753.t1 AT3G25820 33.945 327 197 8 9 324 45 363 7.70e-56 193
MS.gene042753.t1 AT3G25820 33.945 327 197 8 9 324 45 363 7.70e-56 193
MS.gene042753.t1 AT1G61120 24.319 514 345 13 62 548 286 782 1.44e-29 124
MS.gene042753.t1 AT1G79460 23.314 519 349 19 64 548 274 777 1.90e-26 114
MS.gene042753.t1 AT4G02780 30.469 256 148 7 67 294 334 587 4.18e-23 104

Find 93 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTACGTTGGCAAAAT+TGG 0.135143 6.1:-60833340 MS.gene042753:CDS
ATTCTATTTCTGTGCTATTT+AGG 0.140011 6.1:-60834334 MS.gene042753:CDS
TTCTATTTCTGTGCTATTTA+GGG 0.183039 6.1:-60834333 MS.gene042753:CDS
CTGCTGTTCATTGCAGGCTT+AGG 0.241228 6.1:-60831827 MS.gene042753:CDS
AGCCTACATCAAAAGGAATT+TGG 0.257080 6.1:-60833300 MS.gene042753:CDS
ACGTAAGTAGAATTTCATTA+TGG 0.259315 6.1:+60833352 None:intergenic
GATTCATGGTGAGAAAATTT+TGG 0.259321 6.1:-60833538 MS.gene042753:CDS
TCCGTATGCTTCAGAATCTT+TGG 0.269105 6.1:-60835345 MS.gene042753:intron
GTCATCAATGTATGATAAAA+TGG 0.271835 6.1:+60833030 None:intergenic
ATGCTGCTGCTGTTCATTGC+AGG 0.286868 6.1:-60831833 MS.gene042753:CDS
CAGATTTCCACCCTAGCGTT+TGG 0.305039 6.1:-60835382 MS.gene042753:CDS
AGATTTCCACCCTAGCGTTT+GGG 0.318717 6.1:-60835381 MS.gene042753:CDS
AGACGAAATTAATCAAGTTT+TGG 0.321368 6.1:-60834414 MS.gene042753:CDS
TTCCTTGCTTGTCCTTGAAT+TGG 0.334271 6.1:+60833628 None:intergenic
TAGTTGTTTGGATGATCTTC+CGG 0.341349 6.1:-60832699 MS.gene042753:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6.1:-60833117 MS.gene042753:CDS
TTATATGAGGGAATATGATA+TGG 0.360767 6.1:-60831475 MS.gene042753:CDS
CCAATTGAAGATATCATTTG+TGG 0.372281 6.1:+60831881 None:intergenic
TGCTGTTCATTGCAGGCTTA+GGG 0.376798 6.1:-60831826 MS.gene042753:CDS
CCACAAATGATATCTTCAAT+TGG 0.377027 6.1:-60831881 MS.gene042753:CDS
TTCATGTATTCCTCTGTTGT+TGG 0.377218 6.1:+60831972 None:intergenic
CGTAAGTAGAATTTCATTAT+GGG 0.378944 6.1:+60833353 None:intergenic
AAACGTAATGGAACTTTAGT+TGG 0.382677 6.1:+60831375 None:intergenic
TAGGTGGGATATTAGTTGTT+TGG 0.387739 6.1:-60832711 MS.gene042753:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6.1:+60833374 None:intergenic
GATTGACTCAATATGTCGTT+TGG 0.390339 6.1:-60834456 MS.gene042753:CDS
CATACTTGGAATGTTATATG+AGG 0.398446 6.1:-60831488 MS.gene042753:CDS
AGGACATGTTGCTTCATACT+TGG 0.399041 6.1:-60831502 MS.gene042753:CDS
ATATAAATGAGGAATGTCTT+AGG 0.410838 6.1:-60831398 MS.gene042753:CDS
TCGCAAGAGAAGGACTCAAT+TGG 0.412353 6.1:+60833469 None:intergenic
AAAAGAAAATTGACAATGCT+TGG 0.419595 6.1:-60831425 MS.gene042753:CDS
TAGAGAAACTTCATGTAATC+CGG 0.427919 6.1:+60832680 None:intergenic
GCAAATTGATAAACTAAAAC+AGG 0.437343 6.1:-60834534 MS.gene042753:CDS
GTTTCTCTATAAACCACTCT+TGG 0.439981 6.1:-60832666 MS.gene042753:CDS
GCTCCAAAGCCTACATCAAA+AGG 0.450495 6.1:-60833307 MS.gene042753:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6.1:-60831913 MS.gene042753:CDS
CACAAATGATATCTTCAATT+GGG 0.456797 6.1:-60831880 MS.gene042753:CDS
ACTACTCTGTCCCGTGCATA+AGG 0.457542 6.1:+60833133 None:intergenic
ACGACTTCTTACATTGGAAT+GGG 0.460983 6.1:-60831912 MS.gene042753:CDS
TTCCTTGCTTGACAATATTG+AGG 0.465049 6.1:+60833073 None:intergenic
GCCTCACATATGATGATTCA+TGG 0.465433 6.1:-60833552 MS.gene042753:CDS
ATTGACTCAATATGTCGTTT+GGG 0.473862 6.1:-60834455 MS.gene042753:CDS
ACCAAAATCAATGCTCATGT+TGG 0.476318 6.1:+60831231 None:intergenic
AGATGTATTCAACCAATTCA+AGG 0.477088 6.1:-60833640 MS.gene042753:CDS
GAGCAAGAAGTGAAGAAAGA+AGG 0.477567 6.1:-60832626 MS.gene042753:CDS
CGCAAGAGAAGGACTCAATT+GGG 0.484801 6.1:+60833470 None:intergenic
CCAAAATCAATGCTCATGTT+GGG 0.485248 6.1:+60831232 None:intergenic
AACATTGATCATAGATGTTG+AGG 0.512550 6.1:-60833595 MS.gene042753:CDS
AACAATATCAAGTGGTTACC+CGG 0.513550 6.1:-60831943 MS.gene042753:CDS
ATCAATGCTCATGTTGGGAT+GGG 0.522554 6.1:+60831237 None:intergenic
CATGGTCTTTACGTTTCACC+TGG 0.523602 6.1:-60834299 MS.gene042753:intron
ATATAGGTGGTGGAAGGAGT+TGG 0.524102 6.1:-60833173 MS.gene042753:intron
AGCCTCAATATTGTCAAGCA+AGG 0.528176 6.1:-60833075 MS.gene042753:CDS
CTGTGCTATTTAGGGTGTTG+AGG 0.528533 6.1:-60834325 MS.gene042753:CDS
AATCAATGCTCATGTTGGGA+TGG 0.533171 6.1:+60831236 None:intergenic
TGGCCTCACTCATGTAAGCT+TGG 0.536408 6.1:+60832018 None:intergenic
ATCAAGTGGTTACCCGGTGT+TGG 0.539295 6.1:-60831937 MS.gene042753:CDS
GATTTCCACCCTAGCGTTTG+GGG 0.542721 6.1:-60835380 MS.gene042753:CDS
TTGTCAAGCAAGGAAAATGA+TGG 0.545763 6.1:-60833065 MS.gene042753:CDS
TAGCTTCTTGCCTCTAGCCT+AGG 0.554871 6.1:+60833402 None:intergenic
ATACTTGGAATGTTATATGA+GGG 0.559157 6.1:-60831487 MS.gene042753:CDS
GACAAGCAAATCATTAATGT+AGG 0.560101 6.1:+60831263 None:intergenic
TTGACTTGTGTCGCAAGAGA+AGG 0.560387 6.1:+60833459 None:intergenic
GGAATTTGATATAAATATTG+CGG 0.567112 6.1:-60834558 MS.gene042753:CDS
CTTGCGACACAAGTCAAACA+TGG 0.567322 6.1:-60833453 MS.gene042753:CDS
TTTAGGGTGTTGAGGCAACA+TGG 0.568035 6.1:-60834317 MS.gene042753:CDS
AATGGAGAAATAACTCTCAA+AGG 0.571243 6.1:-60834365 MS.gene042753:CDS
TTGGCTACGACTTCTTACAT+TGG 0.575246 6.1:-60831918 MS.gene042753:CDS
AAGCTTACATGAGTGAGGCC+AGG 0.576657 6.1:-60832016 MS.gene042753:CDS
ATAGCACAGAAATAGAATGA+AGG 0.580450 6.1:+60834339 None:intergenic
GATGACACGTATGATGCATA+CGG 0.587584 6.1:-60833013 MS.gene042753:CDS
TAAGAAGTCGTAGCCAACAC+CGG 0.589439 6.1:+60831924 None:intergenic
AAGAAGTCGTAGCCAACACC+GGG 0.590372 6.1:+60831925 None:intergenic
ACCAAAGATTCTGAAGCATA+CGG 0.593001 6.1:+60835344 None:intergenic
ATTGGGTTGCAATTGACTCA+AGG 0.594526 6.1:+60833487 None:intergenic
AACACATCAACAATATCAAG+TGG 0.595383 6.1:-60831951 MS.gene042753:CDS
TCTTCATAAACATCCAAGAG+TGG 0.597368 6.1:+60832653 None:intergenic
ACATTGATCATAGATGTTGA+GGG 0.599537 6.1:-60833594 MS.gene042753:CDS
GACAACTACACACATTCTGA+AGG 0.603730 6.1:-60831297 MS.gene042753:CDS
TTTCCACCCTAGCGTTTGGG+GGG 0.604138 6.1:-60835378 MS.gene042753:CDS
TAATGAAATTCTACTTACGT+TGG 0.604203 6.1:-60833349 MS.gene042753:CDS
AACCAATTCAAGGACAAGCA+AGG 0.604565 6.1:-60833630 MS.gene042753:CDS
CTTTATATATAGGTGGTGGA+AGG 0.614852 6.1:-60833179 MS.gene042753:intron
ATTTCCACCCTAGCGTTTGG+GGG 0.619288 6.1:-60835379 MS.gene042753:CDS
AAACCTCAATAAAACGCGAA+AGG 0.623927 6.1:+60831334 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 6.1:-60831409 MS.gene042753:CDS
ACCATGAATCATCATATGTG+AGG 0.641340 6.1:+60833551 None:intergenic
ATAGTTAACATTCAACCACC+TGG 0.654774 6.1:+60831998 None:intergenic
GGATGAAATTGTGTCTAGCG+AGG 0.663791 6.1:-60831805 MS.gene042753:intron
AGTCCAAGCTTACATGAGTG+AGG 0.665674 6.1:-60832021 MS.gene042753:CDS
AATTGATAAACTAAAACAGG+AGG 0.674763 6.1:-60834531 MS.gene042753:CDS
CTTACATGAGTGAGGCCAGG+TGG 0.678940 6.1:-60832013 MS.gene042753:CDS
TAACTATATACCAACAACAG+AGG 0.696944 6.1:-60831982 MS.gene042753:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG - chr6.1:60831588-60831607 MS.gene042753:intron 10.0%
!! TTGAAAATATATATATTACA+AGG + chr6.1:60831981-60832000 None:intergenic 10.0%
!! TTTAAAAGAAGATTATATAT+TGG - chr6.1:60834481-60834500 MS.gene042753:CDS 10.0%
!!! AATTTAATTTTAAATTAAGG+AGG + chr6.1:60833424-60833443 None:intergenic 10.0%
!!! ATTAAATAATAACTTTTAGA+TGG - chr6.1:60833816-60833835 MS.gene042753:intron 10.0%
!!! ATTATATTTTTGATATCATT+AGG - chr6.1:60832814-60832833 MS.gene042753:intron 10.0%
!!! ATTTAATTTTAAATTAAGGA+GGG + chr6.1:60833423-60833442 None:intergenic 10.0%
!!! TTATAATGAAAATGAATTTT+AGG - chr6.1:60833937-60833956 MS.gene042753:intron 10.0%
!!! TTTTATCATATATTTATACA+CGG - chr6.1:60833880-60833899 MS.gene042753:intron 10.0%
!! AATATAATAAGATGACATAA+TGG - chr6.1:60835037-60835056 MS.gene042753:intron 15.0%
!! AATATAGTAGAATTGTTAAT+AGG + chr6.1:60834600-60834619 None:intergenic 15.0%
!! ATAAAGACCAAAAATATTAT+AGG + chr6.1:60833474-60833493 None:intergenic 15.0%
!! GAATCATTAATATTAATAAG+TGG + chr6.1:60832405-60832424 None:intergenic 15.0%
!! TATATTATGAAAAGTGATTA+AGG - chr6.1:60831679-60831698 MS.gene042753:intron 15.0%
!! TATTATATTAACTCTTAAGA+CGG + chr6.1:60835026-60835045 None:intergenic 15.0%
!!! AATTTTTTAACTTTGATCAT+GGG - chr6.1:60832543-60832562 MS.gene042753:intron 15.0%
!!! ATGATTGATTTACATAAAAT+AGG - chr6.1:60832701-60832720 MS.gene042753:CDS 15.0%
!!! TAATATAAACCTCTAAAAAA+TGG - chr6.1:60832573-60832592 MS.gene042753:intron 15.0%
!!! TAATTTTTTAACTTTGATCA+TGG - chr6.1:60832542-60832561 MS.gene042753:intron 15.0%
!!! TATTTTTGGTCTTTATATAT+AGG - chr6.1:60833478-60833497 MS.gene042753:CDS 15.0%
!!! TGTTATCAGAATAAAATTTT+AGG - chr6.1:60834189-60834208 MS.gene042753:intron 15.0%
!! AAATAAAACCAAGAGAAAAT+AGG - chr6.1:60831739-60831758 MS.gene042753:intron 20.0%
!! AATTAAGATAATGTATAGTG+TGG + chr6.1:60832898-60832917 None:intergenic 20.0%
!! ATGTGTAATAATATCTATGT+TGG + chr6.1:60831865-60831884 None:intergenic 20.0%
!! CATATTTACCAAAAATACAT+AGG - chr6.1:60834559-60834578 MS.gene042753:CDS 20.0%
!! GGAATTTGATATAAATATTG+CGG - chr6.1:60832109-60832128 MS.gene042753:intron 20.0%
!! TTGATTTACATAAAATAGGA+AGG - chr6.1:60832705-60832724 MS.gene042753:CDS 20.0%
!! TTGTTCACGTAAAAAAAAAA+GGG + chr6.1:60831361-60831380 None:intergenic 20.0%
!!! AATGAAAATGAATTTTAGGT+GGG - chr6.1:60833941-60833960 MS.gene042753:intron 20.0%
!!! ACACTTAATTGTTATTTGAA+AGG + chr6.1:60832041-60832060 None:intergenic 20.0%
!!! ATACTTAAACCATTTTTTAG+AGG + chr6.1:60832585-60832604 None:intergenic 20.0%
!!! ATTGTTCATTTTTGTAAACA+AGG - chr6.1:60834953-60834972 MS.gene042753:intron 20.0%
!!! ATTTTTTAACTTTGATCATG+GGG - chr6.1:60832544-60832563 MS.gene042753:intron 20.0%
!!! CTAATTGCCTATAATATTTT+TGG - chr6.1:60833464-60833483 MS.gene042753:CDS 20.0%
!!! GTTTTTCTATCTCTAAATTT+TGG + chr6.1:60833751-60833770 None:intergenic 20.0%
!!! TAATGAAAATGAATTTTAGG+TGG - chr6.1:60833940-60833959 MS.gene042753:intron 20.0%
!!! TTTTGTTGAACTATTATCTA+CGG + chr6.1:60834519-60834538 None:intergenic 20.0%
! AATTGATAAACTAAAACAGG+AGG - chr6.1:60832136-60832155 MS.gene042753:intron 25.0%
! ACGTAAGTAGAATTTCATTA+TGG + chr6.1:60833318-60833337 None:intergenic 25.0%
! ATACTTGGAATGTTATATGA+GGG - chr6.1:60835180-60835199 MS.gene042753:intron 25.0%
! ATATAAATGAGGAATGTCTT+AGG - chr6.1:60835269-60835288 MS.gene042753:intron 25.0%
! CACAAATGATATCTTCAATT+GGG - chr6.1:60834787-60834806 MS.gene042753:intron 25.0%
! CGTAAGTAGAATTTCATTAT+GGG + chr6.1:60833317-60833336 None:intergenic 25.0%
! CGTTGTTACTAAAAATGTAA+AGG + chr6.1:60832611-60832630 None:intergenic 25.0%
! GATCTATGTATGTATCTATA+CGG + chr6.1:60834235-60834254 None:intergenic 25.0%
! GCAAATTGATAAACTAAAAC+AGG - chr6.1:60832133-60832152 MS.gene042753:intron 25.0%
! GCAATGTTAGTAATATTAAG+TGG + chr6.1:60831925-60831944 None:intergenic 25.0%
! GTCAAAAGATCCTATATTAT+TGG + chr6.1:60832009-60832028 None:intergenic 25.0%
! GTCATCAATGTATGATAAAA+TGG + chr6.1:60833640-60833659 None:intergenic 25.0%
! GTTGTTCACGTAAAAAAAAA+AGG + chr6.1:60831362-60831381 None:intergenic 25.0%
! TAATGAAATTCTACTTACGT+TGG - chr6.1:60833318-60833337 MS.gene042753:CDS 25.0%
! TTATATGAGGGAATATGATA+TGG - chr6.1:60835192-60835211 MS.gene042753:intron 25.0%
! TTCAAGAATGCCAATAATAT+AGG - chr6.1:60831996-60832015 MS.gene042753:CDS 25.0%
!! AGACGAAATTAATCAAGTTT+TGG - chr6.1:60832253-60832272 MS.gene042753:intron 25.0%
!! TGAGTTAGAACTTTTTACTA+AGG - chr6.1:60833686-60833705 MS.gene042753:intron 25.0%
!! TTGTGATCAGAACATTTTTA+GGG - chr6.1:60834265-60834284 MS.gene042753:intron 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG - chr6.1:60833697-60833716 MS.gene042753:intron 25.0%
!!! ATCAAGTTGACTTTTTTCAA+CGG + chr6.1:60832194-60832213 None:intergenic 25.0%
!!! ATTCTATTTCTGTGCTATTT+AGG - chr6.1:60832333-60832352 MS.gene042753:intron 25.0%
!!! TATTTTTGATATCATTAGGC+CGG - chr6.1:60832818-60832837 MS.gene042753:intron 25.0%
!!! TCTTACTTCTTTTAAGAAGT+GGG + chr6.1:60834084-60834103 None:intergenic 25.0%
!!! TTCATGTTTTGATTACATAC+AGG - chr6.1:60832088-60832107 MS.gene042753:intron 25.0%
!!! TTCTATTTCTGTGCTATTTA+GGG - chr6.1:60832334-60832353 MS.gene042753:intron 25.0%
!!! TTTTGGTCTTTATATATAGG+TGG - chr6.1:60833481-60833500 MS.gene042753:CDS 25.0%
AACACATCAACAATATCAAG+TGG - chr6.1:60834716-60834735 MS.gene042753:intron 30.0%
AACATTGATCATAGATGTTG+AGG - chr6.1:60833072-60833091 MS.gene042753:CDS 30.0%
AAGGTTCTTCCTTAATAAGA+TGG + chr6.1:60832860-60832879 None:intergenic 30.0%
AATGGAGAAATAACTCTCAA+AGG - chr6.1:60832302-60832321 MS.gene042753:intron 30.0%
ACATTGATCATAGATGTTGA+GGG - chr6.1:60833073-60833092 MS.gene042753:CDS 30.0%
AGATGTATTCAACCAATTCA+AGG - chr6.1:60833027-60833046 MS.gene042753:CDS 30.0%
ATAGCACAGAAATAGAATGA+AGG + chr6.1:60832331-60832350 None:intergenic 30.0%
ATAGTGCACATTGCAAAAAT+TGG + chr6.1:60831443-60831462 None:intergenic 30.0%
ATTTCACGCAATATTCTTTG+TGG - chr6.1:60834910-60834929 MS.gene042753:intron 30.0%
CATAACATTACACGGATAAT+GGG + chr6.1:60832762-60832781 None:intergenic 30.0%
CATACTTGGAATGTTATATG+AGG - chr6.1:60835179-60835198 MS.gene042753:intron 30.0%
CCAATTGAAGATATCATTTG+TGG + chr6.1:60834789-60834808 None:intergenic 30.0%
CCACAAATGATATCTTCAAT+TGG - chr6.1:60834786-60834805 MS.gene042753:intron 30.0%
CTAAAAAACTACCTTATGCA+CGG - chr6.1:60833523-60833542 MS.gene042753:CDS 30.0%
GACAAGCAAATCATTAATGT+AGG + chr6.1:60835407-60835426 None:intergenic 30.0%
TAAAAAACTACCTTATGCAC+GGG - chr6.1:60833524-60833543 MS.gene042753:CDS 30.0%
TAACTATATACCAACAACAG+AGG - chr6.1:60834685-60834704 MS.gene042753:intron 30.0%
TAAGTGGAGATATAAATACC+AGG + chr6.1:60832389-60832408 None:intergenic 30.0%
TAGAGAAACTTCATGTAATC+CGG + chr6.1:60833990-60834009 None:intergenic 30.0%
TGCTTGGAAAGATATAAATG+AGG - chr6.1:60835258-60835277 MS.gene042753:intron 30.0%
TTAATTATACGATCCAAGTG+TGG + chr6.1:60831898-60831917 None:intergenic 30.0%
TTGAGTAAAACAAACTTGTG+TGG - chr6.1:60832453-60832472 MS.gene042753:intron 30.0%
! AAACGTAATGGAACTTTAGT+TGG + chr6.1:60835295-60835314 None:intergenic 30.0%
! ATTGACTCAATATGTCGTTT+GGG - chr6.1:60832212-60832231 MS.gene042753:intron 30.0%
! ATTTTAAATTAAGGAGGGTG+TGG + chr6.1:60833418-60833437 None:intergenic 30.0%
! CACAAGGATTTTGTTCAAAA+TGG - chr6.1:60832284-60832303 MS.gene042753:intron 30.0%
! CATTTTGAACAAAATCCTTG+TGG + chr6.1:60832286-60832305 None:intergenic 30.0%
! CTTGTGATCAGAACATTTTT+AGG - chr6.1:60834264-60834283 MS.gene042753:intron 30.0%
! GATTCATGGTGAGAAAATTT+TGG - chr6.1:60833129-60833148 MS.gene042753:CDS 30.0%
! GTTGGTTATTTGTTAGCAAT+AGG - chr6.1:60831788-60831807 MS.gene042753:intron 30.0%
! TAGGATTTCCAACATTTTTG+AGG - chr6.1:60831828-60831847 MS.gene042753:CDS 30.0%
! TCCTTTTTCCTCAAAAATGT+TGG + chr6.1:60831839-60831858 None:intergenic 30.0%
! TTCCAAATTCCTTTTGATGT+AGG + chr6.1:60833372-60833391 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+TGG + chr6.1:60834085-60834104 None:intergenic 30.0%
!! CTTGGACATCTATTTTGAAA+CGG - chr6.1:60831646-60831665 MS.gene042753:intron 30.0%
!! GGATAATGGGTTGTTTAATA+TGG + chr6.1:60832749-60832768 None:intergenic 30.0%
!! TCCAACATTTTTGAGGAAAA+AGG - chr6.1:60831835-60831854 MS.gene042753:CDS 30.0%
!! TGTGATCAGAACATTTTTAG+GGG - chr6.1:60834266-60834285 MS.gene042753:intron 30.0%
!! TTCTTTTAAGAAGTGGGTAA+TGG + chr6.1:60834078-60834097 None:intergenic 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG - chr6.1:60833551-60833570 MS.gene042753:CDS 30.0%
!!! GACATGTATTTTGAAACAGA+GGG + chr6.1:60831421-60831440 None:intergenic 30.0%
AAAATAGGAAGGATCATCGT+AGG - chr6.1:60832716-60832735 MS.gene042753:intron 35.0%
AAACAGTTCGAGCAAAAAAG+AGG - chr6.1:60835145-60835164 MS.gene042753:intron 35.0%
AAACCTCAATAAAACGCGAA+AGG + chr6.1:60835336-60835355 None:intergenic 35.0%
AACAATATCAAGTGGTTACC+CGG - chr6.1:60834724-60834743 MS.gene042753:intron 35.0%
ACACACGTCAAAAAACGTAA+TGG + chr6.1:60835307-60835326 None:intergenic 35.0%
ACCATGAATCATCATATGTG+AGG + chr6.1:60833119-60833138 None:intergenic 35.0%
ACGACTTCTTACATTGGAAT+GGG - chr6.1:60834755-60834774 MS.gene042753:intron 35.0%
AGCCTACATCAAAAGGAATT+TGG - chr6.1:60833367-60833386 MS.gene042753:CDS 35.0%
ATAGGGTAGCCATCTTATTA+AGG - chr6.1:60832848-60832867 MS.gene042753:intron 35.0%
ATAGTTAACATTCAACCACC+TGG + chr6.1:60834672-60834691 None:intergenic 35.0%
ATGATTGTTCAACATTGTCG+TGG - chr6.1:60832986-60833005 MS.gene042753:CDS 35.0%
CCAAAAATACATAGGAGTTC+AGG - chr6.1:60834567-60834586 MS.gene042753:intron 35.0%
CTAACAAATAACCAACCCTT+TGG + chr6.1:60831784-60831803 None:intergenic 35.0%
GAACAGAGCATAACATTACA+CGG + chr6.1:60832770-60832789 None:intergenic 35.0%
GCATAACATTACACGGATAA+TGG + chr6.1:60832763-60832782 None:intergenic 35.0%
GTTTCTCTATAAACCACTCT+TGG - chr6.1:60834001-60834020 MS.gene042753:intron 35.0%
TAACGGTCAAAATTGTGCAT+TGG - chr6.1:60831605-60831624 MS.gene042753:intron 35.0%
TAATAAGATGGCTACCCTAT+AGG + chr6.1:60832848-60832867 None:intergenic 35.0%
TACGACTTCTTACATTGGAA+TGG - chr6.1:60834754-60834773 MS.gene042753:intron 35.0%
TAGGTGGGATATTAGTTGTT+TGG - chr6.1:60833956-60833975 MS.gene042753:intron 35.0%
TAGTTGTTTGGATGATCTTC+CGG - chr6.1:60833968-60833987 MS.gene042753:intron 35.0%
TCTACTTACGTTGGCAAAAT+TGG - chr6.1:60833327-60833346 MS.gene042753:CDS 35.0%
TCTTCATAAACATCCAAGAG+TGG + chr6.1:60834017-60834036 None:intergenic 35.0%
TGGTCTTTATATATAGGTGG+TGG - chr6.1:60833484-60833503 MS.gene042753:CDS 35.0%
TTAGCAATAGGAATGAAACC+TGG - chr6.1:60831800-60831819 MS.gene042753:intron 35.0%
TTCATGTATTCCTCTGTTGT+TGG + chr6.1:60834698-60834717 None:intergenic 35.0%
TTCCTTGCTTGACAATATTG+AGG + chr6.1:60833597-60833616 None:intergenic 35.0%
TTGTCAAGCAAGGAAAATGA+TGG - chr6.1:60833602-60833621 MS.gene042753:CDS 35.0%
! ATTCCTTTTGATGTAGGCTT+TGG + chr6.1:60833366-60833385 None:intergenic 35.0%
! CCTGAACTCCTATGTATTTT+TGG + chr6.1:60834570-60834589 None:intergenic 35.0%
! GATTGACTCAATATGTCGTT+TGG - chr6.1:60832211-60832230 MS.gene042753:intron 35.0%
! GCAGCAGCATTAACAATTTT+CGG + chr6.1:60834824-60834843 None:intergenic 35.0%
! TTCTGATCACAAGATTTGCT+AGG + chr6.1:60834257-60834276 None:intergenic 35.0%
!! ACCAAAGATTCTGAAGCATA+CGG + chr6.1:60831326-60831345 None:intergenic 35.0%
!! CTTTATATATAGGTGGTGGA+AGG - chr6.1:60833488-60833507 MS.gene042753:CDS 35.0%
!! GAAAATTTTGGAAGAGGCAT+TGG - chr6.1:60833141-60833160 MS.gene042753:CDS 35.0%
!! GTGGTTCTAGAGTATGAAAA+AGG + chr6.1:60832879-60832898 None:intergenic 35.0%
!! TAGCTCTACCTATTTTCTCT+TGG + chr6.1:60831750-60831769 None:intergenic 35.0%
!! TGGTGAGAAAATTTTGGAAG+AGG - chr6.1:60833135-60833154 MS.gene042753:CDS 35.0%
!!! AGTTTTGGAAGATATCCACA+AGG - chr6.1:60832268-60832287 MS.gene042753:intron 35.0%
!!! ATGTTGCTTTTGGGTTATGA+CGG - chr6.1:60833560-60833579 MS.gene042753:CDS 35.0%
!!! GACATCTATTTTGAAACGGA+GGG - chr6.1:60831650-60831669 MS.gene042753:intron 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG - chr6.1:60833550-60833569 MS.gene042753:CDS 35.0%
!!! GGACATGTATTTTGAAACAG+AGG + chr6.1:60831422-60831441 None:intergenic 35.0%
AACCAATTCAAGGACAAGCA+AGG - chr6.1:60833037-60833056 MS.gene042753:CDS 40.0%
ACTAACATTGCACACTCCAA+AGG - chr6.1:60831934-60831953 MS.gene042753:CDS 40.0%
AGCCTCAATATTGTCAAGCA+AGG - chr6.1:60833592-60833611 MS.gene042753:CDS 40.0%
AGCTATAGCAAACACTCCAA+AGG - chr6.1:60831765-60831784 MS.gene042753:intron 40.0%
CATATGTGAAGTGGTTGACT+TGG - chr6.1:60831628-60831647 MS.gene042753:intron 40.0%
CTAACATTGCACACTCCAAA+GGG - chr6.1:60831935-60831954 MS.gene042753:CDS 40.0%
GACAACTACACACATTCTGA+AGG - chr6.1:60835370-60835389 MS.gene042753:CDS 40.0%
GAGCAAGAAGTGAAGAAAGA+AGG - chr6.1:60834041-60834060 MS.gene042753:intron 40.0%
GATGACACGTATGATGCATA+CGG - chr6.1:60833654-60833673 MS.gene042753:intron 40.0%
GCCTCACATATGATGATTCA+TGG - chr6.1:60833115-60833134 MS.gene042753:CDS 40.0%
GCTATAGCAAACACTCCAAA+GGG - chr6.1:60831766-60831785 MS.gene042753:intron 40.0%
GGATGAATCTTGCTCATAGA+TGG + chr6.1:60833296-60833315 None:intergenic 40.0%
GTATGTATCTATACGGAGAG+TGG + chr6.1:60834228-60834247 None:intergenic 40.0%
GTGAGTAACTTGAATCCCTT+TGG + chr6.1:60831953-60831972 None:intergenic 40.0%
GTTGGAAATCCTAAAACACC+AGG + chr6.1:60831821-60831840 None:intergenic 40.0%
TCCGTATGCTTCAGAATCTT+TGG - chr6.1:60831322-60831341 MS.gene042753:CDS 40.0%
TTATACGATCCAAGTGTGGT+TGG + chr6.1:60831894-60831913 None:intergenic 40.0%
TTCCTTGCTTGTCCTTGAAT+TGG + chr6.1:60833042-60833061 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG - chr6.1:60834749-60834768 MS.gene042753:intron 40.0%
! AGGACATGTTGCTTCATACT+TGG - chr6.1:60835165-60835184 MS.gene042753:intron 40.0%
! ATTAGGCCGGTTTACCTATA+GGG - chr6.1:60832831-60832850 MS.gene042753:intron 40.0%
! ATTGGGTTGCAATTGACTCA+AGG + chr6.1:60833183-60833202 None:intergenic 40.0%
! GGAATGAAACCTGGTGTTTT+AGG - chr6.1:60831809-60831828 MS.gene042753:CDS 40.0%
!! CAACCTTTCGCGTTTTATTG+AGG - chr6.1:60835330-60835349 MS.gene042753:intron 40.0%
!!! GGACATCTATTTTGAAACGG+AGG - chr6.1:60831649-60831668 MS.gene042753:intron 40.0%
AGATTTCCACCCTAGCGTTT+GGG - chr6.1:60831286-60831305 MS.gene042753:CDS 45.0%
AGGAAGGATCATCGTAGGAT+CGG - chr6.1:60832721-60832740 MS.gene042753:intron 45.0%
AGTCCAAGCTTACATGAGTG+AGG - chr6.1:60834646-60834665 MS.gene042753:intron 45.0%
CAAAAACTTGCCTAGGCTAG+AGG - chr6.1:60833255-60833274 MS.gene042753:intron 45.0%
CATGGTCTTTACGTTTCACC+TGG - chr6.1:60832368-60832387 MS.gene042753:intron 45.0%
CGCAAGAGAAGGACTCAATT+GGG + chr6.1:60833200-60833219 None:intergenic 45.0%
CTTGCGACACAAGTCAAACA+TGG - chr6.1:60833214-60833233 MS.gene042753:intron 45.0%
GCTCCAAAGCCTACATCAAA+AGG - chr6.1:60833360-60833379 MS.gene042753:CDS 45.0%
GGATGAAATTGTGTCTAGCG+AGG - chr6.1:60834862-60834881 MS.gene042753:intron 45.0%
TAAGAAGTCGTAGCCAACAC+CGG + chr6.1:60834746-60834765 None:intergenic 45.0%
TAGCAAACACTCCAAAGGGT+TGG - chr6.1:60831770-60831789 MS.gene042753:intron 45.0%
TCGCAAGAGAAGGACTCAAT+TGG + chr6.1:60833201-60833220 None:intergenic 45.0%
TGCTGTTCATTGCAGGCTTA+GGG - chr6.1:60834841-60834860 MS.gene042753:intron 45.0%
TGGCTACCCTATAGGTAAAC+CGG + chr6.1:60832840-60832859 None:intergenic 45.0%
! CATTAGGCCGGTTTACCTAT+AGG - chr6.1:60832830-60832849 MS.gene042753:intron 45.0%
! GTGCATTGGCATATGTGAAG+TGG - chr6.1:60831619-60831638 MS.gene042753:intron 45.0%
!! ATATAGGTGGTGGAAGGAGT+TGG - chr6.1:60833494-60833513 MS.gene042753:CDS 45.0%
!! CTGTGCTATTTAGGGTGTTG+AGG - chr6.1:60832342-60832361 MS.gene042753:intron 45.0%
!! TTGACTTGTGTCGCAAGAGA+AGG + chr6.1:60833211-60833230 None:intergenic 45.0%
!! TTTAGGGTGTTGAGGCAACA+TGG - chr6.1:60832350-60832369 MS.gene042753:intron 45.0%
!!! GAGGCATTGGCTTTTACTTC+TGG - chr6.1:60833154-60833173 MS.gene042753:CDS 45.0%
!!! TCATTTTTTATATTTTAATT+TGG - chr6.1:60832423-60832442 MS.gene042753:intron 5.0%
!!! TTCAATTTAATTTTAAATTA+AGG + chr6.1:60833427-60833446 None:intergenic 5.0%
AAGAAGTCGTAGCCAACACC+GGG + chr6.1:60834745-60834764 None:intergenic 50.0%
AAGCTTACATGAGTGAGGCC+AGG - chr6.1:60834651-60834670 MS.gene042753:intron 50.0%
ACTACTCTGTCCCGTGCATA+AGG + chr6.1:60833537-60833556 None:intergenic 50.0%
ATCAAGTGGTTACCCGGTGT+TGG - chr6.1:60834730-60834749 MS.gene042753:intron 50.0%
ATGCTGCTGCTGTTCATTGC+AGG - chr6.1:60834834-60834853 MS.gene042753:intron 50.0%
ATTTCCACCCTAGCGTTTGG+GGG - chr6.1:60831288-60831307 MS.gene042753:CDS 50.0%
CAGATTTCCACCCTAGCGTT+TGG - chr6.1:60831285-60831304 MS.gene042753:CDS 50.0%
CATTGCACACCAACCACACT+TGG - chr6.1:60831882-60831901 MS.gene042753:CDS 50.0%
CTCTGCGCAAAAACTTGCCT+AGG - chr6.1:60833248-60833267 MS.gene042753:intron 50.0%
CTGCTGTTCATTGCAGGCTT+AGG - chr6.1:60834840-60834859 MS.gene042753:intron 50.0%
GATTTCCACCCTAGCGTTTG+GGG - chr6.1:60831287-60831306 MS.gene042753:CDS 50.0%
TAGCTTCTTGCCTCTAGCCT+AGG + chr6.1:60833268-60833287 None:intergenic 50.0%
TGGCCTCACTCATGTAAGCT+TGG + chr6.1:60834652-60834671 None:intergenic 50.0%
! CTAGGCAAGTTTTTGCGCAG+AGG + chr6.1:60833250-60833269 None:intergenic 50.0%
AAGAAGTCCCCCCAAACGCT+AGG + chr6.1:60831299-60831318 None:intergenic 55.0%
AGAAGTCCCCCCAAACGCTA+GGG + chr6.1:60831298-60831317 None:intergenic 55.0%
CTTACATGAGTGAGGCCAGG+TGG - chr6.1:60834654-60834673 MS.gene042753:intron 55.0%
TTTCCACCCTAGCGTTTGGG+GGG - chr6.1:60831289-60831308 MS.gene042753:CDS 55.0%
AGTCCCCCCAAACGCTAGGG+TGG + chr6.1:60831295-60831314 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 60831245 60835444 60831245 ID=MS.gene042753
chr6.1 mRNA 60831245 60835444 60831245 ID=MS.gene042753.t1;Parent=MS.gene042753
chr6.1 exon 60835346 60835444 60835346 ID=MS.gene042753.t1.exon1;Parent=MS.gene042753.t1
chr6.1 CDS 60835346 60835444 60835346 ID=cds.MS.gene042753.t1;Parent=MS.gene042753.t1
chr6.1 exon 60834300 60834579 60834300 ID=MS.gene042753.t1.exon2;Parent=MS.gene042753.t1
chr6.1 CDS 60834300 60834579 60834300 ID=cds.MS.gene042753.t1;Parent=MS.gene042753.t1
chr6.1 exon 60833288 60833660 60833288 ID=MS.gene042753.t1.exon3;Parent=MS.gene042753.t1
chr6.1 CDS 60833288 60833660 60833288 ID=cds.MS.gene042753.t1;Parent=MS.gene042753.t1
chr6.1 exon 60832971 60833189 60832971 ID=MS.gene042753.t1.exon4;Parent=MS.gene042753.t1
chr6.1 CDS 60832971 60833189 60832971 ID=cds.MS.gene042753.t1;Parent=MS.gene042753.t1
chr6.1 exon 60832592 60832730 60832592 ID=MS.gene042753.t1.exon5;Parent=MS.gene042753.t1
chr6.1 CDS 60832592 60832730 60832592 ID=cds.MS.gene042753.t1;Parent=MS.gene042753.t1
chr6.1 exon 60831806 60832054 60831806 ID=MS.gene042753.t1.exon6;Parent=MS.gene042753.t1
chr6.1 CDS 60831806 60832054 60831806 ID=cds.MS.gene042753.t1;Parent=MS.gene042753.t1
chr6.1 exon 60831245 60831538 60831245 ID=MS.gene042753.t1.exon7;Parent=MS.gene042753.t1
chr6.1 CDS 60831245 60831538 60831245 ID=cds.MS.gene042753.t1;Parent=MS.gene042753.t1
Gene Sequence

>MS.gene042753

ATGTCTCATAACGAGAAATCAGTTTTGCAAAGAAATGTTGCAGATTTCCACCCTAGCGTTTGGGGGGACTTCTTCATTCCGTATGCTTCAGAATCTTTGGTACGTATAGAATGCCCTTTTTTTTTTACGTGAACAACAATGATTTTTTTTTAAAGATCAACAACAATGATACTCCCTCTGTTTCAAAATACATGTCCAATTTTTGCAATGTGCACTATTCACTTGACTTACTTTGACTATAGTTTTTAATTAATGTATAAATACAAATATTAGCATGTAAGATGTTGTTTGATTTATCTTGACAAATATTTTCAAAATATTAAATTTTTATAATTTTTTACTTTAGATAATTAAAGATATTAACGGTCAAAATTGTGCATTGGCATATGTGAAGTGGTTGACTTGGACATCTATTTTGAAACGGAGGGAGTATATATATTATGAAAAGTGATTAAGGAGTTCTAGAAACACTATCTTTCTCATATTTCACTCTAAAATAAAACCAAGAGAAAATAGGTAGAGCTATAGCAAACACTCCAAAGGGTTGGTTATTTGTTAGCAATAGGAATGAAACCTGGTGTTTTAGGATTTCCAACATTTTTGAGGAAAAAGGATTTCCAACATAGATATTATTACACATTGCACACCAACCACACTTGGATCGTATAATTAATAAACCACTTAATATTACTAACATTGCACACTCCAAAGGGATTCAAGTTACTCACATTTACCTTGTAATATATATATTTTCAAGAATGCCAATAATATAGGATCTTTTGACTAAATGCATCCTTTCAAATAACAATTAAGTGTCATTTATCAATTAATTTTAAAATCATATTCATGTTTTGATTACATACAGGAATTTGATATAAATATTGCGGCGCAAATTGATAAACTAAAACAGGAGGTTAGACAAATGCTTGTCTCAAAAATTGAGAATCCGTTGAAAAAAGTCAACTTGATTGACTCAATATGTCGTTTGGGTGTGAGCTATTATTTTGAAGACGAAATTAATCAAGTTTTGGAAGATATCCACAAGGATTTTGTTCAAAATGGAGAAATAACTCTCAAAGGCAACCTTCATTCTATTTCTGTGCTATTTAGGGTGTTGAGGCAACATGGTCTTTACGTTTCACCTGGTATTTATATCTCCACTTATTAATATTAATGATTCATTTTTTATATTTTAATTTGGATCACTATTGAGTAAAACAAACTTGTGTGGTAGTTTTTAGTTTTTTTTTTTTTTTTTTTAATTCTAATCGTCAAATTAATACTTTAATTTACAACATAATTTTTTAACTTTGATCATGGGGAGTATCTAATATAAACCTCTAAAAAATGGTTTAAGTATAGACCTTTACATTTTTAGTAACAACGAGAGTTTTATAATACTAAAAATTAAAGAATAACATAAGTATTTAACTTTTTCTTGCATTAAAAAAAAAAGATGATTGATTTACATAAAATAGGAAGGATCATCGTAGGATCGGATCCATATTAAACAACCCATTATCCGTGTAATGTTATGCTCTGTTCTTTACATTATTCGCTTTTTACATAATTATATTTTTGATATCATTAGGCCGGTTTACCTATAGGGTAGCCATCTTATTAAGGAAGAACCTTTTTCATACTCTAGAACCACACTATACATTATCTTAATTGCTTATTGAATTTTTTAATCTTGTTTTAGTTTCTTATTTACGTATACTTATAAATTAAAACATCTCTAATGATTGTTCAACATTGTCGTGGTTTTCTAATAAAAATATTAGATGTATTCAACCAATTCAAGGACAAGCAAGGAAATTTTAGTGAAACATTGATCATAGATGTTGAGGGCATGTTAAACTTGTATGAAGCCTCACATATGATGATTCATGGTGAGAAAATTTTGGAAGAGGCATTGGCTTTTACTTCTGGTCACCTTGAGTCAATTGCAACCCAATTGAGTCCTTCTCTTGCGACACAAGTCAAACATGGCTTAAGACATCCTCTGCGCAAAAACTTGCCTAGGCTAGAGGCAAGAAGCTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTACGTTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTACATCAAAAGGAATTTGGAAACATTTGCAAGTAAGCACTATATCCACACCCTCCTTAATTTAAAATTAAATTGAATTCAAAAACTAACTACTCTAATTGCCTATAATATTTTTGGTCTTTATATATAGGTGGTGGAAGGAGTTGGACATTGCTAAAAAACTACCTTATGCACGGGACAGAGTAGTAGAATGTTGCTTTTGGGTTATGACGGTATATTTTGAGCCTCAATATTGTCAAGCAAGGAAAATGATGGCAAAAGTAATCTCCATTTTATCATACATTGATGACACGTATGATGCATACGGAACAATTGATGAGTTAGAACTTTTTACTAAGGCAATTGAAAGGTTAGCACATCATATAATCAAATAAGCAACCAAAATTTAGAGATAGAAAAACTTGAAATTTATCTGTATTTAAGTATTGAAATTAAGTGATGATAAAATTAAATAATAACTTTTAGATGGTTGCTAATTCTATTTTTTTTAAAAGTAAAATAGACTTTTTTTTTTATCATATATTTATACACGGTCTAATTTTGTCAACAAAAGTATAACAATTAATATTATAATGAAAATGAATTTTAGGTGGGATATTAGTTGTTTGGATGATCTTCCGGATTACATGAAGTTTCTCTATAAACCACTCTTGGATGTTTATGAAGAAATTGAGCAAGAAGTGAAGAAAGAAGGAAGAGTATATGCCATTACCCACTTCTTAAAAGAAGTAAGAGTTTTATTTTATTGATAAAATTTGTTTCTTTTATTGATTTAATTTATTAAACAAACAAACAAATATTTCATTTTCAATTTTATCTTGTTATCAGAATAAAATTTTAGGATTTAATTTGCATCCACTCTCCGTATAGATACATACATAGATCCTAGCAAATCTTGTGATCAGAACATTTTTAGGGGTTTTGTTGAAATTGACATTATAGAGTATCAACATGATGTTATTTGATTGAAAGTATATGTTAAACATATTTATACTATCAATGCATAAAAACTAGTTTAAATAACTTTTTATTAGTTGTTTTATGAACTCAATTTGTAGTAATTACTAGAAGAAATTTTGTTTTGTCAAAATTAGCTTTTTTGTAATTTTAATTTAAAAGAAGATTATATATTGGCAGTTTAATTAACCGTAGATAATAGTTCAACAAAATTTCGAATACAATTTGACATCATATTTACCAAAAATACATAGGAGTTCAGGTACAAAACCTATTAACAATTCTACTATATTTTATAACAATGACAGTTCAAAAATATAGTCCAAGCTTACATGAGTGAGGCCAGGTGGTTGAATGTTAACTATATACCAACAACAGAGGAATACATGAACACATCAACAATATCAAGTGGTTACCCGGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCCACAAATGATATCTTCAATTGGGTAACTAGTCATCCGAAAATTGTTAATGCTGCTGCTGTTCATTGCAGGCTTAGGGATGAAATTGTGTCTAGCGAGGTATTTTTTTTTTATCTAAATATATAATTTCACGCAATATTCTTTGTGGCTAATATATAAGAGATAATTATTGTTCATTTTTGTAAACAAGGTTAACACAACTATTTAAATACAATTTACAATGTTGATATTTTTGTAACCGTCTTAAGAGTTAATATAATAAGATGACATAATGGTGAAATGTGACTTTTACACTGTAACTGCATAGTCATTAAACTATTGATATATCTATTGTATCTCATAGTGTATATATTTTTTGATAAACAGTTCGAGCAAAAAAGAGGACATGTTGCTTCATACTTGGAATGTTATATGAGGGAATATGATATGGATAGAGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAATGCTTGGAAAGATATAAATGAGGAATGTCTTAGGCCAACTAAAGTTCCATTACGTTTTTTGACGTGTGTTCTCAACCTTTCGCGTTTTATTGAGGTTTTTTACAAAGATGAAGACAACTACACACATTCTGAAGGACTAATGAAGACCTACATTAATGATTTGCTTGTCAATCCCATCCCAACATGA
Protein sequence

>MS.gene042753.t1

MSHNEKSVLQRNVADFHPSVWGDFFIPYASESLEFDINIAAQIDKLKQEVRQMLVSKIENPLKKVNLIDSICRLGVSYYFEDEINQVLEDIHKDFVQNGEITLKGNLHSISVLFRVLRQHGLYVSPDVFNQFKDKQGNFSETLIIDVEGMLNLYEASHMMIHGEKILEEALAFTSGHLESIATQLSPSLATQVKHGLRHPLRKNLPRLEARSYISIYEQDSSHNEILLTLAKLDFNMLQSLHQKEFGNICKWWKELDIAKKLPYARDRVVECCFWVMTVYFEPQYCQARKMMAKVISILSYIDDTYDAYGTIDELELFTKAIERWDISCLDDLPDYMKFLYKPLLDVYEEIEQEVKKEGRVYAITHFLKEFKNIVQAYMSEARWLNVNYIPTTEEYMNTSTISSGYPVLATTSYIGMGNIATNDIFNWVTSHPKIVNAAAVHCRLRDEIVSSEFEQKRGHVASYLECYMREYDMDREAAIQECQKKIDNAWKDINEECLRPTKVPLRFLTCVLNLSRFIEVFYKDEDNYTHSEGLMKTYINDLLVNPIPT