AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042766

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042766.t1 MTR_6g039440 69.898 392 118 0 1 392 162 553 0.0 579
MS.gene042766.t1 MTR_5g062230 69.133 392 121 0 1 392 162 553 0.0 575
MS.gene042766.t1 MTR_4g048460 69.487 390 119 0 3 392 172 561 0.0 561
MS.gene042766.t1 MTR_6g008560 66.327 392 132 0 1 392 10 401 0.0 561
MS.gene042766.t1 MTR_6g008560 66.327 392 132 0 1 392 166 557 0.0 561
MS.gene042766.t1 MTR_5g094620 66.667 390 130 0 3 392 148 537 0.0 555
MS.gene042766.t1 MTR_3g464190 65.816 392 134 0 1 392 166 557 0.0 554
MS.gene042766.t1 MTR_5g073260 64.796 392 138 0 1 392 161 552 0.0 538
MS.gene042766.t1 MTR_5g073200 65.306 392 136 0 1 392 158 549 0.0 533
MS.gene042766.t1 MTR_4g081460 59.439 392 159 0 1 392 171 562 3.33e-176 503
MS.gene042766.t1 MTR_4g048460 69.625 293 89 0 3 295 172 464 1.72e-143 416
MS.gene042766.t1 MTR_8g007515 45.592 397 209 5 1 392 162 556 2.15e-124 370
MS.gene042766.t1 MTR_2g081980 45.707 396 209 6 1 392 164 557 1.24e-122 366
MS.gene042766.t1 MTR_2g082010 43.544 395 218 5 1 392 176 568 9.11e-120 359
MS.gene042766.t1 MTR_2g082060 42.317 397 211 7 1 392 170 553 1.65e-109 332
MS.gene042766.t1 MTR_4g019550 40.399 401 217 6 1 392 171 558 1.63e-99 306
MS.gene042766.t1 MTR_2g082050 39.440 393 200 7 1 390 100 457 7.97e-99 301
MS.gene042766.t1 MTR_7g057340 66.860 172 57 0 221 392 1 172 6.75e-86 258
MS.gene042766.t1 MTR_4g045810 34.271 391 256 1 1 390 189 579 1.83e-79 255
MS.gene042766.t1 MTR_7g057390 64.535 172 58 1 221 392 1 169 3.31e-79 241
MS.gene042766.t1 MTR_2g089130 35.246 366 235 2 6 370 180 544 3.04e-76 246
MS.gene042766.t1 MTR_5g094530 56.682 217 58 3 3 217 2 184 6.44e-76 233
MS.gene042766.t1 MTR_2g089120 33.075 387 254 4 6 390 180 563 1.36e-72 237
MS.gene042766.t1 MTR_2g064425 34.021 388 250 5 6 390 185 569 4.39e-69 228
MS.gene042766.t1 MTR_2g064425 34.021 388 250 5 6 390 200 584 5.76e-69 228
MS.gene042766.t1 MTR_4g092020 33.333 390 253 4 1 386 179 565 1.70e-63 213
MS.gene042766.t1 MTR_2g065450 32.732 388 256 4 6 390 203 588 2.34e-63 213
MS.gene042766.t1 MTR_8g057020 31.783 387 261 3 6 390 202 587 5.80e-63 212
MS.gene042766.t1 MTR_7g050990 61.212 165 53 2 36 200 28 181 1.92e-59 207
MS.gene042766.t1 MTR_7g010710 30.534 393 270 2 1 390 161 553 1.09e-58 200
MS.gene042766.t1 MTR_4g092010 28.974 390 265 5 1 384 173 556 2.02e-55 192
MS.gene042766.t1 MTR_6g065040 29.619 341 230 5 32 365 54 391 2.17e-51 177
MS.gene042766.t1 MTR_2g064425 42.105 209 117 3 6 212 185 391 3.05e-49 172
MS.gene042766.t1 MTR_2g064425 42.105 209 117 3 6 212 200 406 4.30e-49 172
MS.gene042766.t1 MTR_3g063120 28.056 360 251 6 32 386 132 488 7.58e-49 172
MS.gene042766.t1 MTR_3g465090 28.571 343 241 3 32 370 156 498 1.84e-48 172
MS.gene042766.t1 MTR_6g064980 28.775 351 240 5 32 375 156 503 2.35e-48 172
MS.gene042766.t1 MTR_3g063170 29.032 341 232 5 32 365 156 493 7.31e-48 170
MS.gene042766.t1 MTR_3g015080 47.674 172 52 2 221 392 1 134 1.34e-47 159
MS.gene042766.t1 MTR_3g063140 28.613 346 237 5 32 370 156 498 1.25e-46 167
MS.gene042766.t1 MTR_3g052120 28.061 392 273 7 1 386 124 512 4.92e-46 165
MS.gene042766.t1 MTR_2g010960 27.068 399 267 7 1 383 128 518 5.84e-46 165
MS.gene042766.t1 MTR_2g012870 23.902 410 284 12 1 390 353 754 2.91e-21 96.3
MS.gene042766.t1 MTR_3g058160 22.901 393 263 11 24 390 395 773 1.60e-19 91.3
MS.gene042766.t1 MTR_3g058160 22.901 393 263 11 24 390 191 569 1.64e-19 90.9
MS.gene042766.t1 MTR_3g058160 22.901 393 263 11 24 390 382 760 1.72e-19 90.9
MS.gene042766.t1 MTR_3g058160 22.901 393 263 11 24 390 402 780 1.81e-19 90.9
MS.gene042766.t1 MTR_3g058160 23.810 336 228 10 69 390 480 801 1.97e-18 87.8
MS.gene042766.t1 MTR_2g064295 22.396 384 256 12 34 390 392 760 4.47e-18 86.7
MS.gene042766.t1 MTR_2g012900 25.095 263 187 7 65 323 444 700 6.07e-18 86.3
MS.gene042766.t1 MTR_3g063160 31.343 134 90 2 32 164 156 288 7.58e-16 77.8
MS.gene042766.t1 MTR_5g081730 39.785 93 56 0 1 93 19 111 3.20e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042766.t1 AT5G23960 40.513 390 231 1 3 392 157 545 6.93e-110 333
MS.gene042766.t1 AT5G23960 40.458 393 229 3 3 392 157 547 1.05e-108 330
MS.gene042766.t1 AT1G70080 37.789 389 236 3 6 388 219 607 8.62e-94 293
MS.gene042766.t1 AT3G14490 38.265 392 236 3 6 392 211 601 3.70e-92 289
MS.gene042766.t1 AT1G31950 37.245 392 241 2 6 392 216 607 4.82e-91 286
MS.gene042766.t1 AT1G31950 37.245 392 241 2 6 392 215 606 5.07e-91 286
MS.gene042766.t1 AT3G14520 36.224 392 245 2 6 392 213 604 5.68e-90 283
MS.gene042766.t1 AT3G14540 36.990 392 242 2 6 392 210 601 1.30e-87 277
MS.gene042766.t1 AT5G48110 37.901 343 208 5 51 392 1 339 2.33e-87 268
MS.gene042766.t1 AT3G29410 35.990 389 247 2 6 392 110 498 2.19e-86 271
MS.gene042766.t1 AT4G20210 34.783 391 251 3 6 392 210 600 1.20e-85 272
MS.gene042766.t1 AT3G29410 35.990 389 247 2 6 392 215 603 4.77e-85 270
MS.gene042766.t1 AT4G20200 35.897 390 244 5 8 392 216 604 6.44e-85 270
MS.gene042766.t1 AT5G44630 35.733 389 246 3 6 390 167 555 2.81e-84 267
MS.gene042766.t1 AT3G32030 33.763 388 254 2 8 392 217 604 1.02e-83 267
MS.gene042766.t1 AT1G33750 33.933 389 254 2 6 392 216 603 5.11e-82 263
MS.gene042766.t1 AT3G29190 33.750 400 253 5 1 392 206 601 2.25e-81 261
MS.gene042766.t1 AT4G13280 34.447 389 251 3 8 392 166 554 8.38e-81 258
MS.gene042766.t1 AT4G13300 34.704 389 250 3 8 392 166 554 9.62e-81 258
MS.gene042766.t1 AT4G15870 33.929 392 241 5 6 392 220 598 2.75e-76 247
MS.gene042766.t1 AT2G23230 34.359 390 252 4 6 391 210 599 6.74e-76 247
MS.gene042766.t1 AT2G23230 34.103 390 248 5 6 391 210 594 2.19e-73 240
MS.gene042766.t1 AT4G20230 33.161 386 253 4 8 388 216 601 5.04e-73 239
MS.gene042766.t1 AT4G20230 33.161 386 253 4 8 388 228 613 6.27e-73 239
MS.gene042766.t1 AT1G31950 39.088 307 182 2 6 307 216 522 9.30e-73 236
MS.gene042766.t1 AT1G66020 33.506 385 252 3 8 388 210 594 6.01e-72 236
MS.gene042766.t1 AT3G29110 33.850 387 252 4 8 390 209 595 6.18e-71 233
MS.gene042766.t1 AT3G14540 39.262 298 177 1 6 299 210 507 4.14e-70 229
MS.gene042766.t1 AT4G13280 32.905 389 227 5 8 392 166 524 1.22e-68 226
MS.gene042766.t1 AT1G48800 31.525 387 258 5 8 388 217 602 7.09e-67 223
MS.gene042766.t1 AT4G16730 31.593 364 240 5 35 392 133 493 2.73e-65 216
MS.gene042766.t1 AT4G16730 31.768 362 238 5 35 390 179 537 5.58e-65 216
MS.gene042766.t1 AT1G48820 30.435 391 249 6 1 385 184 557 2.89e-62 209
MS.gene042766.t1 AT1G61680 31.008 387 262 2 1 382 176 562 5.58e-62 209
MS.gene042766.t1 AT1G61680 31.008 387 262 2 1 382 183 569 6.61e-62 209
MS.gene042766.t1 AT4G16740 32.970 367 239 6 28 392 203 564 1.35e-61 208
MS.gene042766.t1 AT2G24210 31.868 364 241 6 35 392 228 590 3.71e-59 202
MS.gene042766.t1 AT3G25810 31.534 352 235 3 47 392 246 597 5.62e-59 202
MS.gene042766.t1 AT3G25830 31.728 353 232 6 47 392 244 594 1.42e-56 195
MS.gene042766.t1 AT3G25820 31.728 353 232 6 47 392 244 594 1.42e-56 195
MS.gene042766.t1 AT1G66020 38.208 212 127 3 8 215 210 421 3.25e-42 153
MS.gene042766.t1 AT4G16740 35.981 214 131 2 9 217 179 391 6.47e-41 149
MS.gene042766.t1 AT3G25820 37.778 180 110 2 47 225 244 422 9.84e-38 141
MS.gene042766.t1 AT4G16740 39.568 139 84 0 28 166 203 341 8.18e-30 118
MS.gene042766.t1 AT4G16740 39.568 139 84 0 28 166 203 341 8.18e-30 118
MS.gene042766.t1 AT3G25820 41.667 120 70 0 47 166 244 363 1.14e-29 118
MS.gene042766.t1 AT3G25820 41.667 120 70 0 47 166 244 363 1.14e-29 118
MS.gene042766.t1 AT1G79460 24.458 323 230 10 69 382 456 773 1.38e-21 97.4
MS.gene042766.t1 AT1G61120 20.802 399 299 6 5 392 392 784 1.60e-14 75.9

Find 63 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTACTTGCATTGGCAAAAT+TGG 0.119753 6.1:+61117298 MS.gene042766:CDS
TTTCCTTGCTTGAGAATATT+GGG 0.241792 6.1:-61117570 None:intergenic
ATGCAAGTAGAATTTCATTA+TGG 0.248221 6.1:-61117286 None:intergenic
CTGCTATACATTGCAGGCTT+AGG 0.276774 6.1:+61119041 MS.gene042766:CDS
AGCCTGCATCAAAAGGAATT+TGG 0.290423 6.1:+61117338 MS.gene042766:CDS
GTCATCAATGTATGATAAAA+TGG 0.310334 6.1:-61117612 None:intergenic
TAATTGCCTGGAGGATCTTC+CGG 0.335446 6.1:+61117962 MS.gene042766:CDS
TGAGGGAATATGATATGAAT+AGG 0.340079 6.1:+61119243 MS.gene042766:CDS
GAGTAGTAGAATGTTGCTTT+TGG 0.347068 6.1:+61117525 MS.gene042766:CDS
ATGCTGCTGCTATACATTGC+AGG 0.354080 6.1:+61119035 MS.gene042766:CDS
AGGACATGTTTCTTCGTACT+TGG 0.361077 6.1:+61119211 MS.gene042766:CDS
TGCAAGTAGAATTTCATTAT+GGG 0.387262 6.1:-61117285 None:intergenic
CGTACTTGGAATGTTATATG+AGG 0.388936 6.1:+61119225 MS.gene042766:CDS
GGATGAATCTTGCTCATAGA+TGG 0.390050 6.1:-61117264 None:intergenic
CGACAAAAGACATCTTTGAT+TGG 0.390521 6.1:+61118987 MS.gene042766:CDS
GTTGCTTTATAAATCACTCT+TGG 0.404999 6.1:+61117995 MS.gene042766:CDS
TGCATGTACTCCTCTGTTGT+TGG 0.418606 6.1:-61118896 None:intergenic
TAAAGCAACTTCATGTAATC+CGG 0.421098 6.1:-61117981 None:intergenic
ATAAATACTCAAATTTCTAA+AGG 0.433133 6.1:-61119476 None:intergenic
GCCTCACATATGACGGTTCA+TGG 0.441110 6.1:+61117086 None:intergenic
GACAAAAGACATCTTTGATT+GGG 0.442878 6.1:+61118988 MS.gene042766:CDS
AAAAGAAAATTGACAACGCT+TGG 0.444020 6.1:+61119288 MS.gene042766:CDS
TGCTATACATTGCAGGCTTA+GGG 0.448464 6.1:+61119042 MS.gene042766:CDS
TACGACTTCTTACATTGGAA+TGG 0.454510 6.1:+61118955 MS.gene042766:CDS
TAATGAAATTCTACTTGCAT+TGG 0.460272 6.1:+61117289 MS.gene042766:CDS
ACGACTTCTTACATTGGAAT+GGG 0.460983 6.1:+61118956 MS.gene042766:CDS
GCTCCAAAGCCTGCATCAAA+AGG 0.461740 6.1:+61117331 MS.gene042766:CDS
GATGACACATATGATGCATA+TGG 0.467097 6.1:+61117629 MS.gene042766:CDS
GAGCAAGAAATGAAGAAAGA+AGG 0.470516 6.1:+61118035 MS.gene042766:CDS
TAGGTGGGATATTAATTGCC+TGG 0.473504 6.1:+61117950 MS.gene042766:intron
GAGGGAATATGATATGAATA+GGG 0.475500 6.1:+61119244 MS.gene042766:CDS
ATAGTTAGAATTCAGCCATC+TGG 0.477984 6.1:-61118870 None:intergenic
TTGCAAGAGAAGGACTCAAT+CGG 0.484754 6.1:-61117169 None:intergenic
CGCTTGGAAAGATATAAATC+AGG 0.490061 6.1:+61119304 MS.gene042766:CDS
TTCTGGTCACCTTGAGTCGA+TGG 0.501829 6.1:+61117142 MS.gene042766:CDS
TTGAGAACACACGTCAGAAT+AGG 0.502783 6.1:-61119356 None:intergenic
ATACAGGTGGTGGAAGGAGT+TGG 0.512387 6.1:+61117469 MS.gene042766:intron
TAACTTCTTGCCACTAGCCT+AGG 0.521919 6.1:-61117236 None:intergenic
TAAGAAGTCGTAGCCAACAC+TGG 0.522936 6.1:-61118944 None:intergenic
TGGCCTCACTCATATAAGCT+TGG 0.531321 6.1:-61118850 None:intergenic
TTCCTTGCTTGAGAATATTG+GGG 0.534381 6.1:-61117569 None:intergenic
ATAGGTAACGGAACTTCAGT+TGG 0.538099 6.1:-61119338 None:intergenic
AAACAGTTTGAGCAGAAAAG+AGG 0.539017 6.1:+61119191 MS.gene042766:intron
TGCAAGAGAAGGACTCAATC+GGG 0.546913 6.1:-61117168 None:intergenic
AGCCCCAATATTCTCAAGCA+AGG 0.547455 6.1:+61117567 MS.gene042766:CDS
CTTATATGAGTGAGGCCAGA+TGG 0.549142 6.1:+61118855 MS.gene042766:CDS
TTTACTTGTGTTGCAAGAGA+AGG 0.558925 6.1:-61117179 None:intergenic
ATCGGGTGGCCATCGACTCA+AGG 0.563910 6.1:-61117151 None:intergenic
TGTAATCCGGAAGATCCTCC+AGG 0.566106 6.1:-61117968 None:intergenic
GTACTTGGAATGTTATATGA+GGG 0.567173 6.1:+61119226 MS.gene042766:CDS
ATCAAGTGGTTACCCAGTGT+TGG 0.570889 6.1:+61118931 MS.gene042766:CDS
CTTTATATACAGGTGGTGGA+AGG 0.574461 6.1:+61117463 MS.gene042766:intron
TTGGCTACGACTTCTTACAT+TGG 0.586299 6.1:+61118950 MS.gene042766:CDS
ACTACTCTATCTCGTGCATA+CGG 0.590301 6.1:-61117509 None:intergenic
CACATATCAACAATATCAAG+TGG 0.594145 6.1:+61118917 MS.gene042766:CDS
GATAACTACACACACTCTGA+CGG 0.610210 6.1:+61119416 MS.gene042766:CDS
AAGAAGTCGTAGCCAACACT+GGG 0.613680 6.1:-61118943 None:intergenic
AATCCAAGCTTATATGAGTG+AGG 0.644710 6.1:+61118847 MS.gene042766:CDS
GGATGAAATTGTGTCAAGCG+AGG 0.666273 6.1:+61119063 MS.gene042766:CDS
TAACTATATACCAACAACAG+AGG 0.687507 6.1:+61118886 MS.gene042766:CDS
ACACACGTCAGAATAGGTAA+CGG 0.688917 6.1:-61119350 None:intergenic
AAGAGAAGGACTCAATCGGG+TGG 0.695745 6.1:-61117165 None:intergenic
GTGGGATATTAATTGCCTGG+AGG 0.699903 6.1:+61117953 MS.gene042766:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATAAAATAAATGTTAAT+AGG - chr6.1:61118801-61118820 None:intergenic 10.0%
!!! AATTTCATTTAAATTTTTTG+TGG + chr6.1:61118193-61118212 MS.gene042766:intron 10.0%
!!! CTATTAACATTTATTTTATA+TGG + chr6.1:61118799-61118818 MS.gene042766:intron 10.0%
!!! TAATTACATAGTTTTTTTTT+TGG + chr6.1:61118768-61118787 MS.gene042766:intron 10.0%
!! TATAAAGACAAAAATAGTAT+AGG - chr6.1:61117450-61117469 None:intergenic 15.0%
!! TCATAGAATTAATATTACAA+AGG - chr6.1:61118674-61118693 None:intergenic 15.0%
!!! AAACATTTTTACATCATTTT+AGG + chr6.1:61118294-61118313 MS.gene042766:intron 15.0%
!! TGTAAAAAACTTATTATCCA+TGG + chr6.1:61118432-61118451 MS.gene042766:intron 20.0%
!!! AATCAAAATGATTTTTAGGT+GGG + chr6.1:61117935-61117954 MS.gene042766:intron 20.0%
!!! AATTTTTTGTGGTTATCAAA+TGG + chr6.1:61118204-61118223 MS.gene042766:intron 20.0%
!!! CTATTTTTGTCTTTATATAC+AGG + chr6.1:61117453-61117472 MS.gene042766:intron 20.0%
!!! TATCTTGACATTTTAATTAC+TGG + chr6.1:61118700-61118719 MS.gene042766:intron 20.0%
!!! TATTGTTTATCTCTAAAGTT+TGG - chr6.1:61117744-61117763 None:intergenic 20.0%
!!! TGAATTAGAACTTTTTACTA+AGG + chr6.1:61117661-61117680 MS.gene042766:CDS 20.0%
!!! TGATTCTTTTAATAGAGTAA+TGG + chr6.1:61117902-61117921 MS.gene042766:intron 20.0%
!!! TTGCAATCAAAATGATTTTT+AGG + chr6.1:61117931-61117950 MS.gene042766:intron 20.0%
! AACTCAGTTAATAAAATCCA+TGG - chr6.1:61118452-61118471 None:intergenic 25.0%
! AATATATCCATCTTCAATCT+TGG + chr6.1:61117817-61117836 MS.gene042766:intron 25.0%
! ATGCAAGTAGAATTTCATTA+TGG - chr6.1:61117289-61117308 None:intergenic 25.0%
! GTCATCAATGTATGATAAAA+TGG - chr6.1:61117615-61117634 None:intergenic 25.0%
! TAATGAAATTCTACTTGCAT+TGG + chr6.1:61117289-61117308 MS.gene042766:CDS 25.0%
! TGCAAGTAGAATTTCATTAT+GGG - chr6.1:61117288-61117307 None:intergenic 25.0%
! TTCAATCAAATAACTTCATG+AGG - chr6.1:61118370-61118389 None:intergenic 25.0%
!! TCTTTAATCTAGTTTAGAGT+TGG + chr6.1:61117773-61117792 MS.gene042766:intron 25.0%
!! TTTTTACTAAGGCAATTGAA+AGG + chr6.1:61117672-61117691 MS.gene042766:CDS 25.0%
!! TTTTTGTCTTTATATACAGG+TGG + chr6.1:61117456-61117475 MS.gene042766:intron 25.0%
!!! AACTCTTACTTCTTTTAAGA+AGG - chr6.1:61118081-61118100 None:intergenic 25.0%
!!! ACTCTTACTTCTTTTAAGAA+GGG - chr6.1:61118080-61118099 None:intergenic 25.0%
!!! CAATCAAAATGATTTTTAGG+TGG + chr6.1:61117934-61117953 MS.gene042766:intron 25.0%
AAAAGAAAATTGACAACGCT+TGG + chr6.1:61119288-61119307 MS.gene042766:CDS 30.0%
AAACTGAGTTCATATAACCA+TGG - chr6.1:61118608-61118627 None:intergenic 30.0%
CACATATCAACAATATCAAG+TGG + chr6.1:61118917-61118936 MS.gene042766:CDS 30.0%
GACAAAAGACATCTTTGATT+GGG + chr6.1:61118988-61119007 MS.gene042766:CDS 30.0%
GAGGGAATATGATATGAATA+GGG + chr6.1:61119244-61119263 MS.gene042766:CDS 30.0%
GGTTCATGGTGAAAAAATAT+TGG + chr6.1:61117100-61117119 MS.gene042766:CDS 30.0%
GTACTTGGAATGTTATATGA+GGG + chr6.1:61119226-61119245 MS.gene042766:CDS 30.0%
TAAAGCAACTTCATGTAATC+CGG - chr6.1:61117984-61118003 None:intergenic 30.0%
TAACTATATACCAACAACAG+AGG + chr6.1:61118886-61118905 MS.gene042766:CDS 30.0%
TGAGGGAATATGATATGAAT+AGG + chr6.1:61119243-61119262 MS.gene042766:CDS 30.0%
TGCAAAAAACTTATTGTCCA+TGG + chr6.1:61118588-61118607 MS.gene042766:intron 30.0%
TGGTGAAAAAATATTGGAAG+AGG + chr6.1:61117106-61117125 MS.gene042766:CDS 30.0%
TGGTTATCAAATGGAAGTTT+AGG + chr6.1:61118213-61118232 MS.gene042766:intron 30.0%
TTTCCTTGCTTGAGAATATT+GGG - chr6.1:61117573-61117592 None:intergenic 30.0%
! AAAGTATCACCATAATCACT+TGG + chr6.1:61118329-61118348 MS.gene042766:intron 30.0%
! GTTGCTTTATAAATCACTCT+TGG + chr6.1:61117995-61118014 MS.gene042766:CDS 30.0%
! TCATGAGGATACATTTTTCT+TGG - chr6.1:61118355-61118374 None:intergenic 30.0%
! TTTCTTTTGGCATTCTTGAA+TGG - chr6.1:61119276-61119295 None:intergenic 30.0%
! TTTTCCTTGCTTGAGAATAT+TGG - chr6.1:61117574-61117593 None:intergenic 30.0%
!! AAGCGTTGTCAATTTTCTTT+TGG - chr6.1:61119289-61119308 None:intergenic 30.0%
!! CTCTTACTTCTTTTAAGAAG+GGG - chr6.1:61118079-61118098 None:intergenic 30.0%
!!! AGTAGTAGAATGTTGCTTTT+GGG + chr6.1:61117526-61117545 MS.gene042766:CDS 30.0%
AAACAGTTTGAGCAGAAAAG+AGG + chr6.1:61119191-61119210 MS.gene042766:intron 35.0%
AATCCAAGCTTATATGAGTG+AGG + chr6.1:61118847-61118866 MS.gene042766:CDS 35.0%
ACGACTTCTTACATTGGAAT+GGG + chr6.1:61118956-61118975 MS.gene042766:CDS 35.0%
ATAGTTAGAATTCAGCCATC+TGG - chr6.1:61118873-61118892 None:intergenic 35.0%
CGACAAAAGACATCTTTGAT+TGG + chr6.1:61118987-61119006 MS.gene042766:CDS 35.0%
CGCTTGGAAAGATATAAATC+AGG + chr6.1:61119304-61119323 MS.gene042766:CDS 35.0%
CGTACTTGGAATGTTATATG+AGG + chr6.1:61119225-61119244 MS.gene042766:CDS 35.0%
GAGCAAGAAATGAAGAAAGA+AGG + chr6.1:61118035-61118054 MS.gene042766:CDS 35.0%
GATGACACATATGATGCATA+TGG + chr6.1:61117629-61117648 MS.gene042766:CDS 35.0%
TACGACTTCTTACATTGGAA+TGG + chr6.1:61118955-61118974 MS.gene042766:CDS 35.0%
TTCCTTGCTTGAGAATATTG+GGG - chr6.1:61117572-61117591 None:intergenic 35.0%
TTGTCTTTATATACAGGTGG+TGG + chr6.1:61117459-61117478 MS.gene042766:intron 35.0%
TTTACTTGTGTTGCAAGAGA+AGG - chr6.1:61117182-61117201 None:intergenic 35.0%
! GCAGCAGCATTAACAATTTT+TGG - chr6.1:61119025-61119044 None:intergenic 35.0%
! TCTACTTGCATTGGCAAAAT+TGG + chr6.1:61117298-61117317 MS.gene042766:CDS 35.0%
! TTCCAAATTCCTTTTGATGC+AGG - chr6.1:61117343-61117362 None:intergenic 35.0%
! TTTTCTTGGCCAAGTGATTA+TGG - chr6.1:61118341-61118360 None:intergenic 35.0%
!! TTCTTTTAAGAAGGGGTCAA+GGG - chr6.1:61118072-61118091 None:intergenic 35.0%
!!! GAGTAGTAGAATGTTGCTTT+TGG + chr6.1:61117525-61117544 MS.gene042766:CDS 35.0%
ACACACGTCAGAATAGGTAA+CGG - chr6.1:61119353-61119372 None:intergenic 40.0%
ACTACTCTATCTCGTGCATA+CGG - chr6.1:61117512-61117531 None:intergenic 40.0%
AGCCTGCATCAAAAGGAATT+TGG + chr6.1:61117338-61117357 MS.gene042766:CDS 40.0%
AGGACATGTTTCTTCGTACT+TGG + chr6.1:61119211-61119230 MS.gene042766:CDS 40.0%
GATAACTACACACACTCTGA+CGG + chr6.1:61119416-61119435 MS.gene042766:CDS 40.0%
GGATGAATCTTGCTCATAGA+TGG - chr6.1:61117267-61117286 None:intergenic 40.0%
TAGGTGGGATATTAATTGCC+TGG + chr6.1:61117950-61117969 MS.gene042766:intron 40.0%
TGCTATACATTGCAGGCTTA+GGG + chr6.1:61119042-61119061 MS.gene042766:CDS 40.0%
TTAGCGACCAAGATTGAAGA+TGG - chr6.1:61117827-61117846 None:intergenic 40.0%
TTGAGAACACACGTCAGAAT+AGG - chr6.1:61119359-61119378 None:intergenic 40.0%
TTGCAAGAGAAGGACTCAAT+CGG - chr6.1:61117172-61117191 None:intergenic 40.0%
TTGGCTACGACTTCTTACAT+TGG + chr6.1:61118950-61118969 MS.gene042766:CDS 40.0%
! ATTCCTTTTGATGCAGGCTT+TGG - chr6.1:61117337-61117356 None:intergenic 40.0%
!! ATAGGTAACGGAACTTCAGT+TGG - chr6.1:61119341-61119360 None:intergenic 40.0%
!! CTTCTTTTAAGAAGGGGTCA+AGG - chr6.1:61118073-61118092 None:intergenic 40.0%
!! CTTTATATACAGGTGGTGGA+AGG + chr6.1:61117463-61117482 MS.gene042766:intron 40.0%
!!! GAGGCTTTAGCTTTTACTTC+TGG + chr6.1:61117125-61117144 MS.gene042766:CDS 40.0%
AAGAAGTCGTAGCCAACACT+GGG - chr6.1:61118946-61118965 None:intergenic 45.0%
AGCCCCAATATTCTCAAGCA+AGG + chr6.1:61117567-61117586 MS.gene042766:CDS 45.0%
ATCAAGTGGTTACCCAGTGT+TGG + chr6.1:61118931-61118950 MS.gene042766:CDS 45.0%
ATGCTGCTGCTATACATTGC+AGG + chr6.1:61119035-61119054 MS.gene042766:CDS 45.0%
CAAAAACTTGCCTAGGCTAG+TGG + chr6.1:61117226-61117245 MS.gene042766:CDS 45.0%
CTGCTATACATTGCAGGCTT+AGG + chr6.1:61119041-61119060 MS.gene042766:CDS 45.0%
CTTATATGAGTGAGGCCAGA+TGG + chr6.1:61118855-61118874 MS.gene042766:CDS 45.0%
GGATGAAATTGTGTCAAGCG+AGG + chr6.1:61119063-61119082 MS.gene042766:CDS 45.0%
GTGGGATATTAATTGCCTGG+AGG + chr6.1:61117953-61117972 MS.gene042766:CDS 45.0%
TAAGAAGTCGTAGCCAACAC+TGG - chr6.1:61118947-61118966 None:intergenic 45.0%
TAATTGCCTGGAGGATCTTC+CGG + chr6.1:61117962-61117981 MS.gene042766:CDS 45.0%
TGCAAGAGAAGGACTCAATC+GGG - chr6.1:61117171-61117190 None:intergenic 45.0%
TGCATGTACTCCTCTGTTGT+TGG - chr6.1:61118899-61118918 None:intergenic 45.0%
TGGCCTCACTCATATAAGCT+TGG - chr6.1:61118853-61118872 None:intergenic 45.0%
! CAATCTCTCGCGTTTTATCG+AGG + chr6.1:61119376-61119395 MS.gene042766:CDS 45.0%
! CTAGCCTAGGCAAGTTTTTG+CGG - chr6.1:61117226-61117245 None:intergenic 45.0%
! TAACTTCTTGCCACTAGCCT+AGG - chr6.1:61117239-61117258 None:intergenic 45.0%
AAGAGAAGGACTCAATCGGG+TGG - chr6.1:61117168-61117187 None:intergenic 50.0%
CTCTCCGCAAAAACTTGCCT+AGG + chr6.1:61117219-61117238 MS.gene042766:CDS 50.0%
GCTCCAAAGCCTGCATCAAA+AGG + chr6.1:61117331-61117350 MS.gene042766:CDS 50.0%
TGTAATCCGGAAGATCCTCC+AGG - chr6.1:61117971-61117990 None:intergenic 50.0%
TTCTGGTCACCTTGAGTCGA+TGG + chr6.1:61117142-61117161 MS.gene042766:CDS 50.0%
!! ATACAGGTGGTGGAAGGAGT+TGG + chr6.1:61117469-61117488 MS.gene042766:intron 50.0%
!! ATCGGGTGGCCATCGACTCA+AGG - chr6.1:61117154-61117173 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 61117095 61119490 61117095 ID=MS.gene042766
chr6.1 mRNA 61117095 61119490 61117095 ID=MS.gene042766.t1;Parent=MS.gene042766
chr6.1 exon 61117095 61117372 61117095 ID=MS.gene042766.t1.exon1;Parent=MS.gene042766.t1
chr6.1 CDS 61117095 61117372 61117095 ID=cds.MS.gene042766.t1;Parent=MS.gene042766.t1
chr6.1 exon 61117475 61117693 61117475 ID=MS.gene042766.t1.exon2;Parent=MS.gene042766.t1
chr6.1 CDS 61117475 61117693 61117475 ID=cds.MS.gene042766.t1;Parent=MS.gene042766.t1
chr6.1 exon 61117953 61118091 61117953 ID=MS.gene042766.t1.exon3;Parent=MS.gene042766.t1
chr6.1 CDS 61117953 61118091 61117953 ID=cds.MS.gene042766.t1;Parent=MS.gene042766.t1
chr6.1 exon 61118836 61119084 61118836 ID=MS.gene042766.t1.exon4;Parent=MS.gene042766.t1
chr6.1 CDS 61118836 61119084 61118836 ID=cds.MS.gene042766.t1;Parent=MS.gene042766.t1
chr6.1 exon 61119197 61119490 61119197 ID=MS.gene042766.t1.exon5;Parent=MS.gene042766.t1
chr6.1 CDS 61119197 61119490 61119197 ID=cds.MS.gene042766.t1;Parent=MS.gene042766.t1
Gene Sequence

>MS.gene042766

ATGACGGTTCATGGTGAAAAAATATTGGAAGAGGCTTTAGCTTTTACTTCTGGTCACCTTGAGTCGATGGCCACCCGATTGAGTCCTTCTCTTGCAACACAAGTAAAACAAAGCTTAAGACAATCTCTCCGCAAAAACTTGCCTAGGCTAGTGGCAAGAAGTTACATTTCCATCTATGAGCAAGATTCATCCCATAATGAAATTCTACTTGCATTGGCAAAATTGGATTTTAATATGCTCCAAAGCCTGCATCAAAAGGAATTTGGAAACATTAGCAAGTAAGTACATCTTGAGCATACATCAAAATACAAAAGTATATTAAATTGAGTTCAAAAAATAATTATACTAATTTCCTATACTATTTTTGTCTTTATATACAGGTGGTGGAAGGAGTTGGATATTGCTCAAAAACTACCGTATGCACGAGATAGAGTAGTAGAATGTTGCTTTTGGGTTATGACAGTATATTTTGAGCCCCAATATTCTCAAGCAAGGAAAATGATGTCAAAATTTATCTCCATTTTATCATACATTGATGACACATATGATGCATATGGAACTATTGATGAATTAGAACTTTTTACTAAGGCAATTGAAAGGTTAGCACATCATACAATATTATTGTTAAGAATAATTGAATTCGTGACCAAACTTTAGAGATAAACAATATGAAGTTTATCTTTAATCTAGTTTAGAGTTGGAATATTTTTAATAATAACTTCAATATATCCATCTTCAATCTTGGTCGCTAAGTCAATTTTTTTCAAGAAATATAGACATTTTCTTCACATGTATTTGTACGCGATATGATTCTTTTAATAGAGTAATGGTTAATATTGCAATCAAAATGATTTTTAGGTGGGATATTAATTGCCTGGAGGATCTTCCGGATTACATGAAGTTGCTTTATAAATCACTCTTGGATGTTTATGAAGAGATAGAGCAAGAAATGAAGAAAGAAGGAAGAGAATACACCCTTGACCCCTTCTTAAAAGAAGTAAGAGTTTTGCTTTATTGTTAGTGTTATTAGTAATAATAAAGCATTAGTTAAAATTTGTTTCTTTTAGTGATTTATAATTTATTCAACAATTGAACAAAAATTTCATTTAAATTTTTTGTGGTTATCAAATGGAAGTTTAGGATTTTATTTGAACATACTATCAATATAAATACATATATCATATCAAATCTCAACTTTAAAACATTTTTACATCATTTTAGGAATTAACATGAAAAAGTATCACCATAATCACTTGGCCAAGAAAAATGTATCCTCATGAAGTTATTTGATTGAATGTAATGTTACAAAGTTTTCTACTATCAATAATAAAAATTAATGTAAAAAACTTATTATCCATGGATTTTATTAACTGAGTTCATTAACGTGATAAAGTATCATCATGATGACTTGACAAAGAAAAATGTATCATCATGAGTTTATTTGATTAAATGCAATGTTAAACAAAATTCTACTATCAAAGAATAAAAATTAATGCAAAAAACTTATTGTCCATGGTTATATGAACTCAGTTTGTAGTAATAACGATAATAAATTTTGTTTTGTCGTAAAAGAGCTCCTTTGTAATATTAATTCTATGAAAGATATATCTTGACATTTTAATTACTGGTTAGATGAAAACTAAAAAAAATTGCTAATACAGTTTAACATCATTTAATTACATAGTTTTTTTTTTGGTACACAACCTATTAACATTTATTTTATATGGTATACTAATGACAGTTCAAAAATATAATCCAAGCTTATATGAGTGAGGCCAGATGGCTGAATTCTAACTATATACCAACAACAGAGGAGTACATGCACATATCAACAATATCAAGTGGTTACCCAGTGTTGGCTACGACTTCTTACATTGGAATGGGAAACATAGCGACAAAAGACATCTTTGATTGGGTAACTAACAATCCAAAAATTGTTAATGCTGCTGCTATACATTGCAGGCTTAGGGATGAAATTGTGTCAAGCGAGGTAATTTTTGAAAAACATTTAAAAAATTAATATAATAAGTTGACATAATGAAGAAATATGACTCTTGATATATCTAATTTATCTAATATGATTTATATGCTTTGATAAACAGTTTGAGCAGAAAAGAGGACATGTTTCTTCGTACTTGGAATGTTATATGAGGGAATATGATATGAATAGGGAAGCTGCCATTCAAGAATGCCAAAAGAAAATTGACAACGCTTGGAAAGATATAAATCAGGAATGTCTTAAGCCAACTGAAGTTCCGTTACCTATTCTGACGTGTGTTCTCAATCTCTCGCGTTTTATCGAGGTTTTTTACAAAGATACAGATAACTACACACACTCTGACGGACTAATGAAGACATATATTAATGATTTGCTTGTCAATCCTTTAGAAATTTGA
Protein sequence

>MS.gene042766.t1

MTVHGEKILEEALAFTSGHLESMATRLSPSLATQVKQSLRQSLRKNLPRLVARSYISIYEQDSSHNEILLALAKLDFNMLQSLHQKEFGNISKWWKELDIAQKLPYARDRVVECCFWVMTVYFEPQYSQARKMMSKFISILSYIDDTYDAYGTIDELELFTKAIERWDINCLEDLPDYMKLLYKSLLDVYEEIEQEMKKEGREYTLDPFLKEFKNIIQAYMSEARWLNSNYIPTTEEYMHISTISSGYPVLATTSYIGMGNIATKDIFDWVTNNPKIVNAAAIHCRLRDEIVSSEFEQKRGHVSSYLECYMREYDMNREAAIQECQKKIDNAWKDINQECLKPTEVPLPILTCVLNLSRFIEVFYKDTDNYTHSDGLMKTYINDLLVNPLEI