Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76310.t1 | RHN82421.1 | 95.8 | 382 | 14 | 1 | 1 | 382 | 1 | 380 | 7.50E-210 | 739.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76310.t1 | Q9C942 | 35.1 | 288 | 184 | 3 | 91 | 377 | 36 | 321 | 1.1e-44 | 182.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76310.t1 | A0A396K0S6 | 95.8 | 382 | 14 | 1 | 1 | 382 | 1 | 380 | 5.4e-210 | 739.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05015 | MS.gene76310 | 0.801425 | 9.06E-49 | -1.69E-46 |
| MS.gene050961 | MS.gene76310 | 0.802512 | 5.42E-49 | -1.69E-46 |
| MS.gene051959 | MS.gene76310 | 0.819506 | 1.12E-52 | -1.69E-46 |
| MS.gene051960 | MS.gene76310 | 0.823114 | 1.65E-53 | -1.69E-46 |
| MS.gene052053 | MS.gene76310 | 0.803317 | 3.69E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene76310 | 0.813369 | 2.65E-51 | -1.69E-46 |
| MS.gene056185 | MS.gene76310 | 0.808774 | 2.63E-50 | -1.69E-46 |
| MS.gene057001 | MS.gene76310 | 0.83255 | 8.87E-56 | -1.69E-46 |
| MS.gene059690 | MS.gene76310 | 0.80207 | 6.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93966 | MS.gene76310 | PPI |
| MS.gene76310 | MS.gene72606 | PPI |
| MS.gene022183 | MS.gene76310 | PPI |
| MS.gene042920 | MS.gene76310 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76310.t1 | MTR_1g110670 | 89.529 | 382 | 18 | 2 | 1 | 382 | 1 | 360 | 0.0 | 695 |
| MS.gene76310.t1 | MTR_5g056550 | 68.101 | 395 | 110 | 4 | 1 | 381 | 1 | 393 | 0.0 | 566 |
| MS.gene76310.t1 | MTR_5g056550 | 62.785 | 395 | 98 | 5 | 1 | 381 | 1 | 360 | 2.62e-180 | 505 |
| MS.gene76310.t1 | MTR_7g007260 | 58.610 | 331 | 136 | 1 | 47 | 377 | 7 | 336 | 4.71e-144 | 412 |
| MS.gene76310.t1 | MTR_6g018490 | 56.798 | 331 | 142 | 1 | 47 | 377 | 6 | 335 | 8.62e-142 | 407 |
| MS.gene76310.t1 | MTR_6g084420 | 54.192 | 334 | 151 | 2 | 45 | 377 | 4 | 336 | 3.72e-134 | 387 |
| MS.gene76310.t1 | MTR_7g007260 | 55.891 | 331 | 132 | 2 | 47 | 377 | 7 | 323 | 6.29e-132 | 381 |
| MS.gene76310.t1 | MTR_7g007260 | 56.024 | 332 | 131 | 3 | 47 | 377 | 7 | 324 | 6.23e-131 | 379 |
| MS.gene76310.t1 | MTR_6g025610 | 60.490 | 286 | 112 | 1 | 92 | 377 | 41 | 325 | 6.73e-128 | 371 |
| MS.gene76310.t1 | MTR_5g056550 | 63.710 | 248 | 74 | 4 | 1 | 234 | 1 | 246 | 2.15e-114 | 335 |
| MS.gene76310.t1 | MTR_5g056550 | 63.563 | 247 | 74 | 4 | 1 | 233 | 1 | 245 | 1.48e-113 | 332 |
| MS.gene76310.t1 | MTR_1g088470 | 45.965 | 285 | 153 | 1 | 95 | 379 | 8 | 291 | 1.35e-88 | 270 |
| MS.gene76310.t1 | MTR_7g108770 | 43.463 | 283 | 158 | 1 | 95 | 377 | 8 | 288 | 3.32e-86 | 265 |
| MS.gene76310.t1 | MTR_1g115535 | 41.751 | 297 | 172 | 1 | 84 | 380 | 3 | 298 | 3.46e-83 | 256 |
| MS.gene76310.t1 | MTR_1g115535 | 42.907 | 289 | 164 | 1 | 92 | 380 | 7 | 294 | 6.59e-83 | 256 |
| MS.gene76310.t1 | MTR_4g089170 | 38.851 | 296 | 170 | 1 | 96 | 380 | 29 | 324 | 1.01e-71 | 227 |
| MS.gene76310.t1 | MTR_1g095110 | 34.653 | 303 | 182 | 6 | 88 | 376 | 12 | 312 | 1.94e-55 | 185 |
| MS.gene76310.t1 | MTR_4g127220 | 37.050 | 278 | 173 | 2 | 106 | 382 | 41 | 317 | 4.71e-55 | 184 |
| MS.gene76310.t1 | MTR_1g110680 | 67.593 | 108 | 31 | 1 | 275 | 382 | 4 | 107 | 1.71e-40 | 139 |
| MS.gene76310.t1 | MTR_6g071475 | 35.417 | 288 | 176 | 8 | 93 | 379 | 112 | 390 | 8.00e-38 | 140 |
| MS.gene76310.t1 | MTR_3g109870 | 32.384 | 281 | 157 | 9 | 103 | 379 | 103 | 354 | 1.21e-31 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76310.t1 | AT1G77420 | 65.015 | 343 | 120 | 0 | 37 | 379 | 36 | 378 | 1.33e-168 | 476 |
| MS.gene76310.t1 | AT5G16120 | 58.359 | 329 | 136 | 1 | 49 | 377 | 10 | 337 | 1.15e-141 | 407 |
| MS.gene76310.t1 | AT5G16120 | 58.359 | 329 | 136 | 1 | 49 | 377 | 10 | 337 | 1.15e-141 | 407 |
| MS.gene76310.t1 | AT5G16120 | 58.359 | 329 | 136 | 1 | 49 | 377 | 28 | 355 | 1.89e-141 | 407 |
| MS.gene76310.t1 | AT5G16120 | 58.359 | 329 | 136 | 1 | 49 | 377 | 42 | 369 | 2.71e-141 | 407 |
| MS.gene76310.t1 | AT3G62860 | 41.404 | 285 | 165 | 1 | 95 | 379 | 9 | 291 | 4.56e-84 | 259 |
| MS.gene76310.t1 | AT2G39420 | 43.793 | 290 | 162 | 1 | 92 | 381 | 8 | 296 | 1.24e-83 | 258 |
| MS.gene76310.t1 | AT2G47630 | 42.807 | 285 | 163 | 0 | 95 | 379 | 9 | 293 | 2.03e-83 | 258 |
| MS.gene76310.t1 | AT2G39410 | 45.139 | 288 | 157 | 1 | 92 | 379 | 8 | 294 | 2.97e-83 | 256 |
| MS.gene76310.t1 | AT1G11090 | 43.448 | 290 | 164 | 0 | 91 | 380 | 26 | 315 | 7.30e-81 | 251 |
| MS.gene76310.t1 | AT3G55180 | 42.759 | 290 | 166 | 0 | 92 | 381 | 2 | 291 | 2.36e-79 | 246 |
| MS.gene76310.t1 | AT2G39400 | 41.379 | 290 | 169 | 1 | 92 | 381 | 2 | 290 | 2.02e-76 | 239 |
| MS.gene76310.t1 | AT3G62860 | 41.870 | 246 | 143 | 0 | 134 | 379 | 3 | 248 | 1.53e-72 | 229 |
| MS.gene76310.t1 | AT2G47630 | 43.830 | 235 | 132 | 0 | 145 | 379 | 14 | 248 | 1.17e-68 | 219 |
| MS.gene76310.t1 | AT2G47630 | 43.460 | 237 | 134 | 0 | 145 | 381 | 34 | 270 | 1.56e-68 | 219 |
| MS.gene76310.t1 | AT3G55190 | 38.328 | 287 | 175 | 2 | 96 | 381 | 12 | 297 | 8.35e-66 | 212 |
| MS.gene76310.t1 | AT5G14980 | 34.982 | 283 | 181 | 3 | 98 | 379 | 35 | 315 | 4.59e-59 | 194 |
| MS.gene76310.t1 | AT5G19290 | 34.982 | 283 | 182 | 2 | 101 | 382 | 38 | 319 | 3.96e-56 | 187 |
| MS.gene76310.t1 | AT1G52760 | 34.828 | 290 | 181 | 3 | 100 | 382 | 38 | 326 | 3.28e-54 | 182 |
| MS.gene76310.t1 | AT2G39400 | 38.914 | 221 | 134 | 1 | 92 | 312 | 2 | 221 | 2.59e-50 | 169 |
| MS.gene76310.t1 | AT5G11650 | 34.769 | 325 | 187 | 10 | 63 | 376 | 65 | 375 | 3.21e-42 | 152 |
| MS.gene76310.t1 | AT1G73480 | 34.507 | 284 | 166 | 9 | 103 | 380 | 194 | 463 | 8.80e-40 | 147 |
| MS.gene76310.t1 | AT1G18360 | 34.520 | 281 | 171 | 6 | 103 | 380 | 112 | 382 | 1.49e-38 | 142 |
| MS.gene76310.t1 | AT5G11650 | 32.114 | 246 | 141 | 9 | 63 | 295 | 65 | 297 | 2.10e-21 | 94.0 |
| MS.gene76310.t1 | AT2G39410 | 41.935 | 93 | 53 | 1 | 95 | 187 | 11 | 102 | 9.53e-21 | 87.4 |
Find 82 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCCATTATTGATACTTCA+TGG | 0.274482 | 1.1:+78138990 | MS.gene76310:CDS |
| AGGAGGTTACCATGGCATTT+TGG | 0.302834 | 1.1:+78139100 | MS.gene76310:CDS |
| ACTTGCACTTTCTTCTTTGA+AGG | 0.335129 | 1.1:+78137391 | MS.gene76310:CDS |
| TTGATTGGAACGCCATGTTC+TGG | 0.338027 | 1.1:-78137334 | None:intergenic |
| GCAATGGATTTCCCAGGTTT+CGG | 0.351323 | 1.1:+78137525 | MS.gene76310:CDS |
| ACCATGAGATGATGTCATTA+TGG | 0.351512 | 1.1:-78139154 | None:intergenic |
| GCTCCATGAAGTATCAATAA+TGG | 0.356305 | 1.1:-78138993 | None:intergenic |
| ATTTATATTCGGACAGTCAA+TGG | 0.361185 | 1.1:+78138038 | MS.gene76310:CDS |
| TAAAGAAACTGGCTCACTAA+TGG | 0.370262 | 1.1:-78139035 | None:intergenic |
| AGAACCCGGCAAGAGAAAAT+TGG | 0.374826 | 1.1:+78138662 | MS.gene76310:CDS |
| ATGCTTTCTCATAAAGAAAC+TGG | 0.376112 | 1.1:-78139046 | None:intergenic |
| GATTTGCCGCAATTTATATT+CGG | 0.378150 | 1.1:+78138027 | MS.gene76310:CDS |
| TGCTCTTAAAGCTCATTTGA+AGG | 0.379148 | 1.1:+78138071 | MS.gene76310:CDS |
| TCATCTCATGGTTAGACATT+AGG | 0.392634 | 1.1:+78139165 | MS.gene76310:CDS |
| ATGACAACGACACTCCGATT+TGG | 0.395939 | 1.1:+78136483 | MS.gene76310:CDS |
| TGATATTGGATTATGGTGTA+AGG | 0.399930 | 1.1:-78136529 | None:intergenic |
| ATGACTCCGTCCCAATCATT+TGG | 0.412702 | 1.1:-78138096 | None:intergenic |
| ATTTGAAGGAACCAAATGAT+TGG | 0.414265 | 1.1:+78138085 | MS.gene76310:CDS |
| ACGGAAGAAATTCTTTCATC+AGG | 0.419034 | 1.1:-78139131 | None:intergenic |
| GATTATGGTGTAAGGGTAAA+GGG | 0.427866 | 1.1:-78136521 | None:intergenic |
| TGAAAGGAATTCAAGGGGAT+TGG | 0.438456 | 1.1:+78137288 | MS.gene76310:CDS |
| AACACCTTCAAAATTGTAGT+TGG | 0.442279 | 1.1:-78138567 | None:intergenic |
| GGTGTAAGGGTAAAGGGAAA+TGG | 0.442389 | 1.1:-78136515 | None:intergenic |
| ACTTGATCATATCTTATTCA+AGG | 0.446112 | 1.1:+78136707 | MS.gene76310:CDS |
| GAACATGGCGTTCCAATCAA+AGG | 0.465267 | 1.1:+78137337 | MS.gene76310:CDS |
| AACATGGCGTTCCAATCAAA+GGG | 0.467021 | 1.1:+78137338 | MS.gene76310:CDS |
| CCTTCAGATAAACCGAAACC+TGG | 0.470797 | 1.1:-78137537 | None:intergenic |
| TTTGAAGGAACCAAATGATT+GGG | 0.476356 | 1.1:+78138086 | MS.gene76310:CDS |
| CCAGGTTTCGGTTTATCTGA+AGG | 0.476945 | 1.1:+78137537 | MS.gene76310:CDS |
| CCTTGTAGCTCCAATGTGTA+AGG | 0.478506 | 1.1:+78138119 | MS.gene76310:CDS |
| GATCAAACACGATTAAGAAC+TGG | 0.479472 | 1.1:+78138807 | MS.gene76310:CDS |
| GGATTATGGTGTAAGGGTAA+AGG | 0.480388 | 1.1:-78136522 | None:intergenic |
| CTCATCGCTGATACCTTCAA+TGG | 0.484364 | 1.1:-78136601 | None:intergenic |
| CTATAATAGACTGCACCTGC+TGG | 0.486422 | 1.1:+78136828 | MS.gene76310:intron |
| ATCAAGGTTAAGAGAAGCTA+TGG | 0.486484 | 1.1:-78136631 | None:intergenic |
| TTTCTTTGCATTCACTCTCA+GGG | 0.492030 | 1.1:-78136571 | None:intergenic |
| TGCGGCAAATCCCTCACCTC+TGG | 0.492405 | 1.1:-78138015 | None:intergenic |
| AGTTCAGATAGATCCTTGTA+TGG | 0.502102 | 1.1:-78138630 | None:intergenic |
| TTGGTTATCAGTGGTATGAA+AGG | 0.504463 | 1.1:+78137272 | MS.gene76310:intron |
| TTTATATTCGGACAGTCAAT+GGG | 0.504492 | 1.1:+78138039 | MS.gene76310:CDS |
| GGTTTATCTGAAGGATTACA+TGG | 0.507433 | 1.1:+78137546 | MS.gene76310:CDS |
| GATATTGGATTATGGTGTAA+GGG | 0.515166 | 1.1:-78136528 | None:intergenic |
| ACCTTCAAAATTGTAGTTGG+CGG | 0.515776 | 1.1:-78138564 | None:intergenic |
| GTTTATGCAATGGATTTCCC+AGG | 0.516962 | 1.1:+78137519 | MS.gene76310:CDS |
| TACGAGAAGGTGCATGATCA+AGG | 0.526915 | 1.1:-78136647 | None:intergenic |
| TGGATTTGGTGTTTATGCAA+TGG | 0.528835 | 1.1:+78137509 | MS.gene76310:CDS |
| CCTTACACATTGGAGCTACA+AGG | 0.538468 | 1.1:-78138119 | None:intergenic |
| TCTTGAGTTATGATCCCAGC+AGG | 0.541950 | 1.1:-78136843 | None:intergenic |
| AGTGGTATGAAAGGAATTCA+AGG | 0.543776 | 1.1:+78137281 | MS.gene76310:intron |
| TTCTCGTAGACATGTTCGAC+AGG | 0.544042 | 1.1:+78136662 | MS.gene76310:CDS |
| TCGACTAAATCATCAAAACT+TGG | 0.545949 | 1.1:-78137576 | None:intergenic |
| ACTTCATGGAGCAGAAGATA+AGG | 0.548587 | 1.1:+78139004 | MS.gene76310:CDS |
| GACAGCTAGACCAGAGGTGA+GGG | 0.549583 | 1.1:+78138005 | MS.gene76310:intron |
| GGCAAAACTATTTCCATACA+AGG | 0.558367 | 1.1:+78138617 | MS.gene76310:CDS |
| TTGATTGCCAAGATATCAGA+AGG | 0.558672 | 1.1:+78138534 | MS.gene76310:intron |
| ATAATTGTTCAGGTATTGCA+AGG | 0.560443 | 1.1:+78137472 | MS.gene76310:intron |
| AAGACACTAAAGATCTATGA+AGG | 0.565411 | 1.1:+78139080 | MS.gene76310:CDS |
| AACACGATTAAGAACTGGCA+TGG | 0.566445 | 1.1:+78138812 | MS.gene76310:CDS |
| TCAAGATATTGAGTCACAGT+TGG | 0.570097 | 1.1:+78138851 | MS.gene76310:CDS |
| GTGGTATGAAAGGAATTCAA+GGG | 0.572692 | 1.1:+78137282 | MS.gene76310:intron |
| TATAATAGACTGCACCTGCT+GGG | 0.586633 | 1.1:+78136829 | MS.gene76310:intron |
| TATTGAGTCACAGTTGGAGA+AGG | 0.587825 | 1.1:+78138857 | MS.gene76310:CDS |
| ATCTATGAAGGAGGTTACCA+TGG | 0.587933 | 1.1:+78139092 | MS.gene76310:CDS |
| CTTGTCTAAAATGATGCCAA+AGG | 0.592063 | 1.1:+78138596 | MS.gene76310:CDS |
| TGAGATGATGTCATTATGGA+CGG | 0.598860 | 1.1:-78139150 | None:intergenic |
| AAAAGCTGGATGCCAGAACA+TGG | 0.599820 | 1.1:+78137322 | MS.gene76310:CDS |
| TCCATAATGACATCATCTCA+TGG | 0.601214 | 1.1:+78139153 | MS.gene76310:CDS |
| CTGTGACTCAATATCTTGAG+TGG | 0.612313 | 1.1:-78138847 | None:intergenic |
| AAGGAACCAAATGATTGGGA+CGG | 0.614530 | 1.1:+78138090 | MS.gene76310:CDS |
| GACTGTCCGAATATAAATTG+CGG | 0.618570 | 1.1:-78138033 | None:intergenic |
| CTTCAGATAAACCGAAACCT+GGG | 0.619450 | 1.1:-78137536 | None:intergenic |
| CGTTGTCATAGATAGCTCCA+TGG | 0.621711 | 1.1:-78136469 | None:intergenic |
| ATATTCGGACAGTCAATGGG+TGG | 0.631708 | 1.1:+78138042 | MS.gene76310:CDS |
| TGACAGCTAGACCAGAGGTG+AGG | 0.639641 | 1.1:+78138004 | MS.gene76310:intron |
| AATGGACATACCTTACACAT+TGG | 0.639810 | 1.1:-78138129 | None:intergenic |
| GTTCACCTTCCAAAATGCCA+TGG | 0.645530 | 1.1:-78139109 | None:intergenic |
| TGTCGAACATGTCTACGAGA+AGG | 0.657476 | 1.1:-78136660 | None:intergenic |
| TTGCTGATGCACATGAGTGA+AGG | 0.663071 | 1.1:-78136685 | None:intergenic |
| TGGTATGAAAGGAATTCAAG+GGG | 0.670152 | 1.1:+78137283 | MS.gene76310:CDS |
| TACATTGACAGCTAGACCAG+AGG | 0.671347 | 1.1:+78137999 | MS.gene76310:intron |
| ACACTAAAGATCTATGAAGG+AGG | 0.678648 | 1.1:+78139083 | MS.gene76310:CDS |
| ACATGGCGTTCCAATCAAAG+GGG | 0.730927 | 1.1:+78137339 | MS.gene76310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATAGCTATAGTAT+AGG | - | chr1.1:78138933-78138952 | None:intergenic | 15.0% |
| !!! | AAATGAAGATTAGTTTAAAA+AGG | + | chr1.1:78137742-78137761 | MS.gene76310:intron | 15.0% |
| !! | AATCCAAGATCAATTTATAT+GGG | + | chr1.1:78138424-78138443 | MS.gene76310:intron | 20.0% |
| !! | GAATTCCATACAAAAATTAA+AGG | + | chr1.1:78137609-78137628 | MS.gene76310:CDS | 20.0% |
| !! | TAATCCAAGATCAATTTATA+TGG | + | chr1.1:78138423-78138442 | MS.gene76310:intron | 20.0% |
| !! | TCATTGTCATATATAATTTC+AGG | + | chr1.1:78138962-78138981 | MS.gene76310:intron | 20.0% |
| !!! | AGTTTTTTGATATTGGATTA+TGG | - | chr1.1:78136539-78136558 | None:intergenic | 20.0% |
| !!! | ATTGATTTGAATAATTGTTC+AGG | + | chr1.1:78137462-78137481 | MS.gene76310:intron | 20.0% |
| !!! | TCATACCTTTAATTTTTGTA+TGG | - | chr1.1:78137617-78137636 | None:intergenic | 20.0% |
| !!! | TGATGTCTATACATTAATTT+TGG | + | chr1.1:78137253-78137272 | MS.gene76310:intron | 20.0% |
| !!! | TTTGTAGAGTTTTTTGATAT+TGG | - | chr1.1:78136546-78136565 | None:intergenic | 20.0% |
| ! | AAGCACTTATTAGACTATTT+GGG | - | chr1.1:78137165-78137184 | None:intergenic | 25.0% |
| ! | ACTTGATCATATCTTATTCA+AGG | + | chr1.1:78136707-78136726 | MS.gene76310:CDS | 25.0% |
| ! | ATAACACATTTCACAGTTTA+GGG | - | chr1.1:78137225-78137244 | None:intergenic | 25.0% |
| ! | ATCACGATTGCTAAAATAAA+AGG | - | chr1.1:78137640-78137659 | None:intergenic | 25.0% |
| ! | ATGATGTGTAAAAAACTACA+AGG | + | chr1.1:78137709-78137728 | MS.gene76310:intron | 25.0% |
| ! | CTTATGAAAACATCTTACTT+AGG | - | chr1.1:78137138-78137157 | None:intergenic | 25.0% |
| ! | CTTTGCTTAAAAATCAATGA+TGG | - | chr1.1:78137799-78137818 | None:intergenic | 25.0% |
| ! | GAACAAATGCATAGTTAATT+TGG | - | chr1.1:78138748-78138767 | None:intergenic | 25.0% |
| ! | GATCAATTTATATGGGAAAA+TGG | + | chr1.1:78138431-78138450 | MS.gene76310:intron | 25.0% |
| ! | TAAGCACTTATTAGACTATT+TGG | - | chr1.1:78137166-78137185 | None:intergenic | 25.0% |
| ! | TGTAATTTCTTTGACATCTA+AGG | + | chr1.1:78138235-78138254 | MS.gene76310:intron | 25.0% |
| ! | TTCAAATAAGTCGATCTAAA+GGG | - | chr1.1:78136994-78137013 | None:intergenic | 25.0% |
| ! | TTTCCCATATAAATTGATCT+TGG | - | chr1.1:78138430-78138449 | None:intergenic | 25.0% |
| !! | ACTATCTATCATTTGTTGAA+TGG | + | chr1.1:78138455-78138474 | MS.gene76310:intron | 25.0% |
| !! | GATTATTTCCAATATCGATT+TGG | - | chr1.1:78138408-78138427 | None:intergenic | 25.0% |
| !! | GCATTTGTTCTTTCTTTTAT+AGG | + | chr1.1:78138758-78138777 | MS.gene76310:intron | 25.0% |
| !! | TATGAAATGAAAAAAGTGTG+AGG | - | chr1.1:78136752-78136771 | None:intergenic | 25.0% |
| !! | TTTCTTTGTTTGTGTTTCAT+TGG | + | chr1.1:78136794-78136813 | MS.gene76310:intron | 25.0% |
| !!! | ACATTAATTTTGGTTATCAG+TGG | + | chr1.1:78137263-78137282 | MS.gene76310:intron | 25.0% |
| !!! | AGTTTTTTACACATCATTGT+CGG | - | chr1.1:78137706-78137725 | None:intergenic | 25.0% |
| !!! | CATCATTGATTTTTAAGCAA+AGG | + | chr1.1:78137797-78137816 | MS.gene76310:intron | 25.0% |
| !!! | GAAGATTAGTTTAAAAAGGA+TGG | + | chr1.1:78137746-78137765 | MS.gene76310:intron | 25.0% |
| !!! | TTGGTTGGTAATTTAATTTG+TGG | + | chr1.1:78138681-78138700 | MS.gene76310:intron | 25.0% |
| AACACCTTCAAAATTGTAGT+TGG | - | chr1.1:78138570-78138589 | None:intergenic | 30.0% | |
| AAGAAAAAGTCAACCATTGA+AGG | + | chr1.1:78136588-78136607 | MS.gene76310:CDS | 30.0% | |
| AAGACACTAAAGATCTATGA+AGG | + | chr1.1:78139080-78139099 | MS.gene76310:CDS | 30.0% | |
| AGAGTTATCAAATTTGAGGA+TGG | + | chr1.1:78137436-78137455 | MS.gene76310:intron | 30.0% | |
| ATAGATTGCAACAACAATCA+CGG | - | chr1.1:78137667-78137686 | None:intergenic | 30.0% | |
| ATGCTTTCTCATAAAGAAAC+TGG | - | chr1.1:78139049-78139068 | None:intergenic | 30.0% | |
| ATTTATATTCGGACAGTCAA+TGG | + | chr1.1:78138038-78138057 | MS.gene76310:CDS | 30.0% | |
| ATTTGAAGGAACCAAATGAT+TGG | + | chr1.1:78138085-78138104 | MS.gene76310:CDS | 30.0% | |
| CATAACACATTTCACAGTTT+AGG | - | chr1.1:78137226-78137245 | None:intergenic | 30.0% | |
| CTAGAGAGTTATCAAATTTG+AGG | + | chr1.1:78137432-78137451 | MS.gene76310:intron | 30.0% | |
| GATATTGGATTATGGTGTAA+GGG | - | chr1.1:78136531-78136550 | None:intergenic | 30.0% | |
| GATTTGCCGCAATTTATATT+CGG | + | chr1.1:78138027-78138046 | MS.gene76310:CDS | 30.0% | |
| GTTCAAATAAGTCGATCTAA+AGG | - | chr1.1:78136995-78137014 | None:intergenic | 30.0% | |
| TCAAACAAGAACAACAAATC+AGG | - | chr1.1:78138518-78138537 | None:intergenic | 30.0% | |
| TCAAACTTGCAAAAGAATAC+TGG | - | chr1.1:78138300-78138319 | None:intergenic | 30.0% | |
| TCGACTAAATCATCAAAACT+TGG | - | chr1.1:78137579-78137598 | None:intergenic | 30.0% | |
| TGATATTGGATTATGGTGTA+AGG | - | chr1.1:78136532-78136551 | None:intergenic | 30.0% | |
| TGTCAAAGAAATTACAAGAG+TGG | - | chr1.1:78138231-78138250 | None:intergenic | 30.0% | |
| TTGTTTGTGTTTCATTGGAA+TGG | + | chr1.1:78136799-78136818 | MS.gene76310:intron | 30.0% | |
| TTTATATTCGGACAGTCAAT+GGG | + | chr1.1:78138039-78138058 | MS.gene76310:CDS | 30.0% | |
| TTTGAAGGAACCAAATGATT+GGG | + | chr1.1:78138086-78138105 | MS.gene76310:CDS | 30.0% | |
| ! | ATAATTGTTCAGGTATTGCA+AGG | + | chr1.1:78137472-78137491 | MS.gene76310:intron | 30.0% |
| ! | CAAGTTTGAGATTCAATACT+TGG | + | chr1.1:78138311-78138330 | MS.gene76310:intron | 30.0% |
| !! | GATTAGTTTAAAAAGGATGG+AGG | + | chr1.1:78137749-78137768 | MS.gene76310:intron | 30.0% |
| !! | TATGGAAATAGTTTTGCCTT+TGG | - | chr1.1:78138615-78138634 | None:intergenic | 30.0% |
| !! | TTGTTTTTCTGTCATGGATA+TGG | + | chr1.1:78137364-78137383 | MS.gene76310:CDS | 30.0% |
| !!! | AATGGTTTTGTGATCCAAAT+CGG | - | chr1.1:78136500-78136519 | None:intergenic | 30.0% |
| AAAAACAAAGCCCCTTTGAT+TGG | - | chr1.1:78137352-78137371 | None:intergenic | 35.0% | |
| AATGGACATACCTTACACAT+TGG | - | chr1.1:78138132-78138151 | None:intergenic | 35.0% | |
| ACACTAAAGATCTATGAAGG+AGG | + | chr1.1:78139083-78139102 | MS.gene76310:CDS | 35.0% | |
| ACCATGAGATGATGTCATTA+TGG | - | chr1.1:78139157-78139176 | None:intergenic | 35.0% | |
| ACCTTCAAAATTGTAGTTGG+CGG | - | chr1.1:78138567-78138586 | None:intergenic | 35.0% | |
| ACGGAAGAAATTCTTTCATC+AGG | - | chr1.1:78139134-78139153 | None:intergenic | 35.0% | |
| ACTTGCACTTTCTTCTTTGA+AGG | + | chr1.1:78137391-78137410 | MS.gene76310:CDS | 35.0% | |
| AGTGGTATGAAAGGAATTCA+AGG | + | chr1.1:78137281-78137300 | MS.gene76310:intron | 35.0% | |
| AGTTCAGATAGATCCTTGTA+TGG | - | chr1.1:78138633-78138652 | None:intergenic | 35.0% | |
| AGTTGTATTAGCACATCTGT+TGG | + | chr1.1:78138486-78138505 | MS.gene76310:intron | 35.0% | |
| ATCAAGGTTAAGAGAAGCTA+TGG | - | chr1.1:78136634-78136653 | None:intergenic | 35.0% | |
| GACTGTCCGAATATAAATTG+CGG | - | chr1.1:78138036-78138055 | None:intergenic | 35.0% | |
| GATCAAACACGATTAAGAAC+TGG | + | chr1.1:78138807-78138826 | MS.gene76310:CDS | 35.0% | |
| GATTATGGTGTAAGGGTAAA+GGG | - | chr1.1:78136524-78136543 | None:intergenic | 35.0% | |
| GCTCCATTATTGATACTTCA+TGG | + | chr1.1:78138990-78139009 | MS.gene76310:CDS | 35.0% | |
| GGCAAAACTATTTCCATACA+AGG | + | chr1.1:78138617-78138636 | MS.gene76310:CDS | 35.0% | |
| GGTTTATCTGAAGGATTACA+TGG | + | chr1.1:78137546-78137565 | MS.gene76310:CDS | 35.0% | |
| GTCAATGTAAATGCATCGAA+AGG | - | chr1.1:78137988-78138007 | None:intergenic | 35.0% | |
| GTGGTATGAAAGGAATTCAA+GGG | + | chr1.1:78137282-78137301 | MS.gene76310:intron | 35.0% | |
| TAACATGCCTTCTGATATCT+TGG | - | chr1.1:78138544-78138563 | None:intergenic | 35.0% | |
| TCAAGATATTGAGTCACAGT+TGG | + | chr1.1:78138851-78138870 | MS.gene76310:CDS | 35.0% | |
| TCATCTCATGGTTAGACATT+AGG | + | chr1.1:78139165-78139184 | MS.gene76310:CDS | 35.0% | |
| TCCATAATGACATCATCTCA+TGG | + | chr1.1:78139153-78139172 | MS.gene76310:CDS | 35.0% | |
| TGAGATGATGTCATTATGGA+CGG | - | chr1.1:78139153-78139172 | None:intergenic | 35.0% | |
| TGCTCTTAAAGCTCATTTGA+AGG | + | chr1.1:78138071-78138090 | MS.gene76310:CDS | 35.0% | |
| TGGTATGAAAGGAATTCAAG+GGG | + | chr1.1:78137283-78137302 | MS.gene76310:CDS | 35.0% | |
| TTGATTGCCAAGATATCAGA+AGG | + | chr1.1:78138534-78138553 | MS.gene76310:intron | 35.0% | |
| TTGGTTATCAGTGGTATGAA+AGG | + | chr1.1:78137272-78137291 | MS.gene76310:intron | 35.0% | |
| TTTCTTTGCATTCACTCTCA+GGG | - | chr1.1:78136574-78136593 | None:intergenic | 35.0% | |
| TTTGCTCACTTTCTGTTACT+TGG | + | chr1.1:78138893-78138912 | MS.gene76310:intron | 35.0% | |
| ! | ATTTGATAACTCTCTAGCTC+TGG | - | chr1.1:78137429-78137448 | None:intergenic | 35.0% |
| ! | CTTGTCTAAAATGATGCCAA+AGG | + | chr1.1:78138596-78138615 | MS.gene76310:CDS | 35.0% |
| ! | GCTCCATGAAGTATCAATAA+TGG | - | chr1.1:78138996-78139015 | None:intergenic | 35.0% |
| ! | GCTTTTGTCCAAATCGATAT+TGG | + | chr1.1:78138397-78138416 | MS.gene76310:intron | 35.0% |
| ! | TAAAGAAACTGGCTCACTAA+TGG | - | chr1.1:78139038-78139057 | None:intergenic | 35.0% |
| ! | TGCAAAAGAATACTGGTTGA+GGG | - | chr1.1:78138293-78138312 | None:intergenic | 35.0% |
| ! | TGGTAGAGTGCAAATTTTCA+AGG | - | chr1.1:78138728-78138747 | None:intergenic | 35.0% |
| ! | TTGCAAAAGAATACTGGTTG+AGG | - | chr1.1:78138294-78138313 | None:intergenic | 35.0% |
| ! | TTTTCTTTGCATTCACTCTC+AGG | - | chr1.1:78136575-78136594 | None:intergenic | 35.0% |
| !! | TGGATTTGGTGTTTATGCAA+TGG | + | chr1.1:78137509-78137528 | MS.gene76310:CDS | 35.0% |
| !!! | ATTTTAGCTGCTTCTGGATT+TGG | + | chr1.1:78137495-78137514 | MS.gene76310:CDS | 35.0% |
| AACACGATTAAGAACTGGCA+TGG | + | chr1.1:78138812-78138831 | MS.gene76310:CDS | 40.0% | |
| AACATGGCGTTCCAATCAAA+GGG | + | chr1.1:78137338-78137357 | MS.gene76310:CDS | 40.0% | |
| AAGGAACCAAATGATTGGGA+CGG | + | chr1.1:78138090-78138109 | MS.gene76310:CDS | 40.0% | |
| ACTTCATGGAGCAGAAGATA+AGG | + | chr1.1:78139004-78139023 | MS.gene76310:CDS | 40.0% | |
| ATCTATGAAGGAGGTTACCA+TGG | + | chr1.1:78139092-78139111 | MS.gene76310:CDS | 40.0% | |
| CAACATCAAATGCAACACAG+AGG | - | chr1.1:78138155-78138174 | None:intergenic | 40.0% | |
| CTGTGACTCAATATCTTGAG+TGG | - | chr1.1:78138850-78138869 | None:intergenic | 40.0% | |
| CTTCAGATAAACCGAAACCT+GGG | - | chr1.1:78137539-78137558 | None:intergenic | 40.0% | |
| GGATTATGGTGTAAGGGTAA+AGG | - | chr1.1:78136525-78136544 | None:intergenic | 40.0% | |
| GTCGCACAAATGTTTATGTC+AGG | - | chr1.1:78137024-78137043 | None:intergenic | 40.0% | |
| TATAATAGACTGCACCTGCT+GGG | + | chr1.1:78136829-78136848 | MS.gene76310:intron | 40.0% | |
| TATTGAGTCACAGTTGGAGA+AGG | + | chr1.1:78138857-78138876 | MS.gene76310:CDS | 40.0% | |
| TCAAATGCAACACAGAGGAA+TGG | - | chr1.1:78138150-78138169 | None:intergenic | 40.0% | |
| TGAAAGGAATTCAAGGGGAT+TGG | + | chr1.1:78137288-78137307 | MS.gene76310:CDS | 40.0% | |
| ! | ACCAACCAATTTTCTCTTGC+CGG | - | chr1.1:78138670-78138689 | None:intergenic | 40.0% |
| ! | ACCGCCAACTACAATTTTGA+AGG | + | chr1.1:78138563-78138582 | MS.gene76310:CDS | 40.0% |
| ! | GTTTATGCAATGGATTTCCC+AGG | + | chr1.1:78137519-78137538 | MS.gene76310:CDS | 40.0% |
| ! | TGGAGATTTTCTGCAAAAGC+TGG | + | chr1.1:78137308-78137327 | MS.gene76310:CDS | 40.0% |
| ! | TTCACAGTTTAGGGCATGTT+TGG | - | chr1.1:78137216-78137235 | None:intergenic | 40.0% |
| !! | GAACTTATTTTCCGAGAACC+CGG | + | chr1.1:78138648-78138667 | MS.gene76310:CDS | 40.0% |
| AAAAGCTGGATGCCAGAACA+TGG | + | chr1.1:78137322-78137341 | MS.gene76310:CDS | 45.0% | |
| ACATGGCGTTCCAATCAAAG+GGG | + | chr1.1:78137339-78137358 | MS.gene76310:CDS | 45.0% | |
| AGAACCCGGCAAGAGAAAAT+TGG | + | chr1.1:78138662-78138681 | MS.gene76310:CDS | 45.0% | |
| ATATTCGGACAGTCAATGGG+TGG | + | chr1.1:78138042-78138061 | MS.gene76310:CDS | 45.0% | |
| ATGACAACGACACTCCGATT+TGG | + | chr1.1:78136483-78136502 | MS.gene76310:CDS | 45.0% | |
| ATGACTCCGTCCCAATCATT+TGG | - | chr1.1:78138099-78138118 | None:intergenic | 45.0% | |
| CCAGGTTTCGGTTTATCTGA+AGG | + | chr1.1:78137537-78137556 | MS.gene76310:CDS | 45.0% | |
| CCTTACACATTGGAGCTACA+AGG | - | chr1.1:78138122-78138141 | None:intergenic | 45.0% | |
| CCTTCAGATAAACCGAAACC+TGG | - | chr1.1:78137540-78137559 | None:intergenic | 45.0% | |
| CCTTGTAGCTCCAATGTGTA+AGG | + | chr1.1:78138119-78138138 | MS.gene76310:CDS | 45.0% | |
| CTATAATAGACTGCACCTGC+TGG | + | chr1.1:78136828-78136847 | MS.gene76310:intron | 45.0% | |
| CTCATCGCTGATACCTTCAA+TGG | - | chr1.1:78136604-78136623 | None:intergenic | 45.0% | |
| GAACATGGCGTTCCAATCAA+AGG | + | chr1.1:78137337-78137356 | MS.gene76310:CDS | 45.0% | |
| GCACGATGATGAGTATAGCA+AGG | + | chr1.1:78136903-78136922 | MS.gene76310:intron | 45.0% | |
| GGTGTAAGGGTAAAGGGAAA+TGG | - | chr1.1:78136518-78136537 | None:intergenic | 45.0% | |
| GTTCACCTTCCAAAATGCCA+TGG | - | chr1.1:78139112-78139131 | None:intergenic | 45.0% | |
| TACATTGACAGCTAGACCAG+AGG | + | chr1.1:78137999-78138018 | MS.gene76310:intron | 45.0% | |
| TCTTGAGTTATGATCCCAGC+AGG | - | chr1.1:78136846-78136865 | None:intergenic | 45.0% | |
| TGAGTATAGCAAGGCATGCT+TGG | + | chr1.1:78136912-78136931 | MS.gene76310:intron | 45.0% | |
| TGTCGAACATGTCTACGAGA+AGG | - | chr1.1:78136663-78136682 | None:intergenic | 45.0% | |
| TTCTCGTAGACATGTTCGAC+AGG | + | chr1.1:78136662-78136681 | MS.gene76310:CDS | 45.0% | |
| TTGATTGGAACGCCATGTTC+TGG | - | chr1.1:78137337-78137356 | None:intergenic | 45.0% | |
| TTGCTGATGCACATGAGTGA+AGG | - | chr1.1:78136688-78136707 | None:intergenic | 45.0% | |
| ! | AGGAGGTTACCATGGCATTT+TGG | + | chr1.1:78139100-78139119 | MS.gene76310:CDS | 45.0% |
| ! | ATTTTCTCTTGCCGGGTTCT+CGG | - | chr1.1:78138662-78138681 | None:intergenic | 45.0% |
| ! | CCAACCAATTTTCTCTTGCC+GGG | - | chr1.1:78138669-78138688 | None:intergenic | 45.0% |
| ! | GCAATGGATTTCCCAGGTTT+CGG | + | chr1.1:78137525-78137544 | MS.gene76310:CDS | 45.0% |
| ! | GGTTACCATGGCATTTTGGA+AGG | + | chr1.1:78139104-78139123 | MS.gene76310:CDS | 45.0% |
| ! | TACGAGAAGGTGCATGATCA+AGG | - | chr1.1:78136650-78136669 | None:intergenic | 45.0% |
| !!! | GCAAGGATTTTAGCTGCTTC+TGG | + | chr1.1:78137489-78137508 | MS.gene76310:CDS | 45.0% |
| !!! | GGGGCTTTGTTTTTCTGTCA+TGG | + | chr1.1:78137358-78137377 | MS.gene76310:CDS | 45.0% |
| CCCGGCAAGAGAAAATTGGT+TGG | + | chr1.1:78138666-78138685 | MS.gene76310:intron | 50.0% | |
| GACAGCTAGACCAGAGGTGA+GGG | + | chr1.1:78138005-78138024 | MS.gene76310:intron | 55.0% | |
| TGACAGCTAGACCAGAGGTG+AGG | + | chr1.1:78138004-78138023 | MS.gene76310:intron | 55.0% | |
| TGCGGCAAATCCCTCACCTC+TGG | - | chr1.1:78138018-78138037 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 78136471 | 78139199 | 78136471 | ID=MS.gene76310 |
| chr1.1 | mRNA | 78136471 | 78139199 | 78136471 | ID=MS.gene76310.t1;Parent=MS.gene76310 |
| chr1.1 | exon | 78136471 | 78136728 | 78136471 | ID=MS.gene76310.t1.exon1;Parent=MS.gene76310.t1 |
| chr1.1 | CDS | 78136471 | 78136728 | 78136471 | ID=cds.MS.gene76310.t1;Parent=MS.gene76310.t1 |
| chr1.1 | exon | 78136837 | 78136866 | 78136837 | ID=MS.gene76310.t1.exon2;Parent=MS.gene76310.t1 |
| chr1.1 | CDS | 78136837 | 78136866 | 78136837 | ID=cds.MS.gene76310.t1;Parent=MS.gene76310.t1 |
| chr1.1 | exon | 78137283 | 78137412 | 78137283 | ID=MS.gene76310.t1.exon3;Parent=MS.gene76310.t1 |
| chr1.1 | CDS | 78137283 | 78137412 | 78137283 | ID=cds.MS.gene76310.t1;Parent=MS.gene76310.t1 |
| chr1.1 | exon | 78137484 | 78137630 | 78137484 | ID=MS.gene76310.t1.exon4;Parent=MS.gene76310.t1 |
| chr1.1 | CDS | 78137484 | 78137630 | 78137484 | ID=cds.MS.gene76310.t1;Parent=MS.gene76310.t1 |
| chr1.1 | exon | 78138010 | 78138140 | 78138010 | ID=MS.gene76310.t1.exon5;Parent=MS.gene76310.t1 |
| chr1.1 | CDS | 78138010 | 78138140 | 78138010 | ID=cds.MS.gene76310.t1;Parent=MS.gene76310.t1 |
| chr1.1 | exon | 78138546 | 78138683 | 78138546 | ID=MS.gene76310.t1.exon6;Parent=MS.gene76310.t1 |
| chr1.1 | CDS | 78138546 | 78138683 | 78138546 | ID=cds.MS.gene76310.t1;Parent=MS.gene76310.t1 |
| chr1.1 | exon | 78138780 | 78138878 | 78138780 | ID=MS.gene76310.t1.exon7;Parent=MS.gene76310.t1 |
| chr1.1 | CDS | 78138780 | 78138878 | 78138780 | ID=cds.MS.gene76310.t1;Parent=MS.gene76310.t1 |
| chr1.1 | exon | 78138984 | 78139199 | 78138984 | ID=MS.gene76310.t1.exon8;Parent=MS.gene76310.t1 |
| chr1.1 | CDS | 78138984 | 78139199 | 78138984 | ID=cds.MS.gene76310.t1;Parent=MS.gene76310.t1 |
| Gene Sequence |
| Protein sequence |
