Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63039.t1 | XP_003614638.1 | 96.5 | 395 | 14 | 0 | 1 | 395 | 1 | 395 | 2.00E-221 | 778.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63039.t1 | Q9C942 | 35.2 | 290 | 185 | 3 | 103 | 391 | 36 | 323 | 2.1e-46 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63039.t1 | G7K1K2 | 96.5 | 395 | 14 | 0 | 1 | 395 | 1 | 395 | 1.4e-221 | 778.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04933 | MS.gene63039 | 0.815005 | 1.15E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene63039 | 0.838449 | 2.86E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene63039 | 0.829228 | 5.79E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene63039 | 0.827272 | 1.71E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene63039 | 0.801501 | 8.74E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene63039 | -0.802948 | 4.40E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene63039 | 0.864894 | 8.75E-65 | -1.69E-46 |
| MS.gene050763 | MS.gene63039 | 0.863168 | 3.02E-64 | -1.69E-46 |
| MS.gene050780 | MS.gene63039 | 0.807295 | 5.42E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene63039 | 0.817544 | 3.12E-52 | -1.69E-46 |
| MS.gene053147 | MS.gene63039 | 0.819821 | 9.50E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene63039 | 0.942478 | 6.70E-102 | -1.69E-46 |
| MS.gene054379 | MS.gene63039 | 0.844621 | 6.75E-59 | -1.69E-46 |
| MS.gene054467 | MS.gene63039 | 0.814116 | 1.81E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene63039 | 0.832493 | 9.16E-56 | -1.69E-46 |
| MS.gene054581 | MS.gene63039 | 0.801354 | 9.37E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene63039 | 0.817474 | 3.24E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene63039 | 0.82149 | 3.93E-53 | -1.69E-46 |
| MS.gene057929 | MS.gene63039 | 0.824481 | 7.88E-54 | -1.69E-46 |
| MS.gene059664 | MS.gene63039 | 0.856403 | 3.29E-62 | -1.69E-46 |
| MS.gene060802 | MS.gene63039 | 0.803771 | 2.97E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene63039 | 0.808205 | 3.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene63039 | MS.gene042920 | PPI |
| MS.gene63039 | MS.gene022183 | PPI |
| MS.gene93966 | MS.gene63039 | PPI |
| MS.gene63039 | MS.gene72606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63039.t1 | MTR_5g056550 | 96.456 | 395 | 14 | 0 | 1 | 395 | 1 | 395 | 0.0 | 796 |
| MS.gene63039.t1 | MTR_5g056550 | 88.101 | 395 | 14 | 1 | 1 | 395 | 1 | 362 | 0.0 | 712 |
| MS.gene63039.t1 | MTR_1g110670 | 64.810 | 395 | 101 | 5 | 1 | 393 | 1 | 359 | 0.0 | 526 |
| MS.gene63039.t1 | MTR_5g056550 | 94.309 | 246 | 14 | 0 | 1 | 246 | 1 | 246 | 1.80e-179 | 500 |
| MS.gene63039.t1 | MTR_5g056550 | 94.694 | 245 | 13 | 0 | 1 | 245 | 1 | 245 | 3.65e-178 | 496 |
| MS.gene63039.t1 | MTR_7g007260 | 58.912 | 331 | 135 | 1 | 59 | 389 | 7 | 336 | 1.99e-143 | 411 |
| MS.gene63039.t1 | MTR_6g084420 | 54.412 | 340 | 153 | 2 | 57 | 395 | 4 | 342 | 1.50e-139 | 402 |
| MS.gene63039.t1 | MTR_6g018490 | 55.255 | 333 | 148 | 1 | 59 | 391 | 6 | 337 | 4.92e-138 | 398 |
| MS.gene63039.t1 | MTR_7g007260 | 56.798 | 331 | 129 | 2 | 59 | 389 | 7 | 323 | 4.44e-133 | 385 |
| MS.gene63039.t1 | MTR_7g007260 | 56.928 | 332 | 128 | 3 | 59 | 389 | 7 | 324 | 3.94e-132 | 382 |
| MS.gene63039.t1 | MTR_6g025610 | 58.333 | 288 | 119 | 1 | 104 | 391 | 41 | 327 | 3.29e-126 | 367 |
| MS.gene63039.t1 | MTR_1g115535 | 46.207 | 290 | 155 | 1 | 104 | 393 | 7 | 295 | 5.78e-93 | 282 |
| MS.gene63039.t1 | MTR_1g115535 | 46.207 | 290 | 155 | 1 | 104 | 393 | 11 | 299 | 6.43e-93 | 282 |
| MS.gene63039.t1 | MTR_1g088470 | 45.614 | 285 | 154 | 1 | 107 | 391 | 8 | 291 | 2.16e-88 | 270 |
| MS.gene63039.t1 | MTR_7g108770 | 44.170 | 283 | 156 | 1 | 107 | 389 | 8 | 288 | 1.03e-84 | 261 |
| MS.gene63039.t1 | MTR_4g089170 | 39.209 | 278 | 169 | 0 | 115 | 392 | 47 | 324 | 1.06e-70 | 225 |
| MS.gene63039.t1 | MTR_4g127220 | 36.426 | 291 | 182 | 3 | 103 | 392 | 27 | 315 | 2.11e-57 | 191 |
| MS.gene63039.t1 | MTR_1g095110 | 34.532 | 278 | 178 | 4 | 113 | 388 | 37 | 312 | 1.96e-54 | 183 |
| MS.gene63039.t1 | MTR_6g071475 | 33.562 | 292 | 172 | 12 | 107 | 391 | 114 | 390 | 1.04e-32 | 127 |
| MS.gene63039.t1 | MTR_1g110680 | 54.206 | 107 | 45 | 1 | 287 | 393 | 4 | 106 | 3.37e-30 | 112 |
| MS.gene63039.t1 | MTR_3g109870 | 27.500 | 280 | 172 | 9 | 115 | 391 | 103 | 354 | 1.44e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63039.t1 | AT1G77420 | 64.265 | 347 | 124 | 0 | 49 | 395 | 36 | 382 | 9.42e-173 | 487 |
| MS.gene63039.t1 | AT5G16120 | 61.094 | 329 | 127 | 1 | 61 | 389 | 10 | 337 | 2.64e-151 | 432 |
| MS.gene63039.t1 | AT5G16120 | 61.094 | 329 | 127 | 1 | 61 | 389 | 10 | 337 | 2.64e-151 | 432 |
| MS.gene63039.t1 | AT5G16120 | 61.094 | 329 | 127 | 1 | 61 | 389 | 28 | 355 | 4.16e-151 | 432 |
| MS.gene63039.t1 | AT5G16120 | 61.094 | 329 | 127 | 1 | 61 | 389 | 42 | 369 | 4.92e-151 | 432 |
| MS.gene63039.t1 | AT2G39420 | 46.552 | 290 | 154 | 1 | 104 | 393 | 8 | 296 | 2.27e-90 | 275 |
| MS.gene63039.t1 | AT2G39410 | 46.528 | 288 | 153 | 1 | 104 | 391 | 8 | 294 | 8.53e-90 | 274 |
| MS.gene63039.t1 | AT3G62860 | 44.912 | 285 | 155 | 1 | 107 | 391 | 9 | 291 | 1.15e-87 | 270 |
| MS.gene63039.t1 | AT2G47630 | 45.263 | 285 | 156 | 0 | 107 | 391 | 9 | 293 | 9.54e-86 | 265 |
| MS.gene63039.t1 | AT2G39400 | 45.172 | 290 | 158 | 1 | 104 | 393 | 2 | 290 | 2.80e-85 | 262 |
| MS.gene63039.t1 | AT3G55180 | 44.674 | 291 | 161 | 0 | 104 | 394 | 2 | 292 | 8.62e-85 | 261 |
| MS.gene63039.t1 | AT1G11090 | 43.643 | 291 | 164 | 0 | 103 | 393 | 26 | 316 | 6.09e-82 | 254 |
| MS.gene63039.t1 | AT3G62860 | 44.715 | 246 | 136 | 0 | 146 | 391 | 3 | 248 | 1.07e-75 | 237 |
| MS.gene63039.t1 | AT3G55190 | 40.690 | 290 | 169 | 3 | 106 | 394 | 11 | 298 | 4.43e-74 | 234 |
| MS.gene63039.t1 | AT2G47630 | 43.952 | 248 | 139 | 0 | 146 | 393 | 3 | 250 | 2.42e-70 | 223 |
| MS.gene63039.t1 | AT2G47630 | 45.378 | 238 | 130 | 0 | 156 | 393 | 33 | 270 | 5.45e-70 | 223 |
| MS.gene63039.t1 | AT2G39400 | 43.891 | 221 | 123 | 1 | 104 | 324 | 2 | 221 | 8.90e-59 | 192 |
| MS.gene63039.t1 | AT1G52760 | 35.052 | 291 | 186 | 3 | 103 | 392 | 36 | 324 | 7.32e-58 | 192 |
| MS.gene63039.t1 | AT5G14980 | 33.101 | 287 | 189 | 3 | 110 | 395 | 35 | 319 | 2.77e-56 | 188 |
| MS.gene63039.t1 | AT5G19290 | 33.451 | 284 | 187 | 2 | 113 | 395 | 38 | 320 | 1.78e-54 | 183 |
| MS.gene63039.t1 | AT5G11650 | 32.740 | 281 | 173 | 11 | 115 | 391 | 110 | 378 | 4.02e-34 | 130 |
| MS.gene63039.t1 | AT1G73480 | 30.961 | 281 | 180 | 8 | 115 | 392 | 194 | 463 | 3.39e-33 | 129 |
| MS.gene63039.t1 | AT1G18360 | 30.496 | 282 | 181 | 8 | 115 | 392 | 112 | 382 | 8.66e-31 | 121 |
| MS.gene63039.t1 | AT2G39410 | 46.535 | 101 | 53 | 1 | 104 | 204 | 8 | 107 | 3.95e-26 | 102 |
| MS.gene63039.t1 | AT5G11650 | 33.835 | 133 | 82 | 5 | 115 | 245 | 110 | 238 | 2.68e-14 | 73.6 |
Find 71 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGATCATTGCTTGTTTA+AGG | 0.083877 | 5.4:+44803740 | MS.gene63039:CDS |
| CTTCAAAGGGTTGTTGTATA+TGG | 0.181103 | 5.4:-44803532 | None:intergenic |
| TTGTCTCATGGCTTGATTCT+AGG | 0.244614 | 5.4:+44807325 | MS.gene63039:CDS |
| AAATGGTTACCACTGCATTT+TGG | 0.257020 | 5.4:+44807260 | MS.gene63039:CDS |
| AAACCGGCATGGAACTTCTA+AGG | 0.285828 | 5.4:+44806801 | MS.gene63039:CDS |
| GCACCATTATTGATTCTTCA+TGG | 0.293013 | 5.4:+44807150 | MS.gene63039:CDS |
| TACAGAAATTTGCTCACTAA+TGG | 0.293286 | 5.4:-44807195 | None:intergenic |
| ACTTTAAAGCTCTATGAAAA+TGG | 0.295246 | 5.4:+44807243 | MS.gene63039:CDS |
| GCGATGGACTATCCAGGTTT+TGG | 0.299515 | 5.4:+44804900 | MS.gene63039:CDS |
| ATTTGAAGGAGCCAGATAAT+TGG | 0.320173 | 5.4:+44805307 | MS.gene63039:CDS |
| GAGCATTATACACAAATAAA+AGG | 0.327592 | 5.4:+44804984 | MS.gene63039:CDS |
| TTTGGGAAGAGCTTTGCTTT+TGG | 0.337150 | 5.4:-44806259 | None:intergenic |
| AAACAAAGACCTTGCTGAAC+TGG | 0.340152 | 5.4:+44806279 | MS.gene63039:CDS |
| AGAACCGAGTAAAAGAAAAT+TGG | 0.356076 | 5.4:+44806309 | MS.gene63039:CDS |
| TTACAATGTTATTTGTTATG+AGG | 0.365279 | 5.4:+44806763 | MS.gene63039:CDS |
| AGTTCAGCAAGGTCTTTGTT+TGG | 0.377018 | 5.4:-44806277 | None:intergenic |
| ACATGCACATTCTTCTTTGA+AGG | 0.377141 | 5.4:+44804598 | MS.gene63039:CDS |
| ATCACAGCATCCCAATTATC+TGG | 0.383934 | 5.4:-44805318 | None:intergenic |
| TTCAAAGGGTTGTTGTATAT+GGG | 0.389599 | 5.4:-44803531 | None:intergenic |
| GTTCAGCAAGGTCTTTGTTT+GGG | 0.393636 | 5.4:-44806276 | None:intergenic |
| AATTCTGTTGGGACAGTCAA+TGG | 0.397631 | 5.4:+44805260 | MS.gene63039:CDS |
| TTCGCTTAAAGTTTATTTGA+AGG | 0.401747 | 5.4:+44805293 | MS.gene63039:CDS |
| TTTGAAGGAGCCAGATAATT+GGG | 0.402919 | 5.4:+44805308 | MS.gene63039:CDS |
| CGAGGTAATTCTCTCATATC+AGG | 0.408211 | 5.4:-44805237 | None:intergenic |
| TCTTCACTCACACCTTCAAT+TGG | 0.413503 | 5.4:-44803633 | None:intergenic |
| GCGAGGAGAATTGCTGCATC+TGG | 0.415251 | 5.4:+44804864 | MS.gene63039:CDS |
| AGGATGTTAAGTTCTTTGAT+TGG | 0.415918 | 5.4:-44803494 | None:intergenic |
| TCAACAAGATCATCGAAGTT+TGG | 0.427383 | 5.4:-44804951 | None:intergenic |
| AACGCCTTCATTACTGCATC+AGG | 0.429805 | 5.4:-44806214 | None:intergenic |
| TGAAAGGAATTCGAGGGGAT+TGG | 0.432685 | 5.4:+44804495 | MS.gene63039:CDS |
| AAACACACAGATGCCTTGAT+TGG | 0.446327 | 5.4:-44804556 | None:intergenic |
| GCTCCATGAAGAATCAATAA+TGG | 0.456411 | 5.4:-44807153 | None:intergenic |
| AGGGTAATTGATTCTTCAAA+GGG | 0.459828 | 5.4:-44803545 | None:intergenic |
| TCATAACAAATAACATTGTA+AGG | 0.471754 | 5.4:-44806761 | None:intergenic |
| AAGGGTAATTGATTCTTCAA+AGG | 0.472924 | 5.4:-44803546 | None:intergenic |
| AAGAGCTGGATGCCAGAGTC+AGG | 0.476747 | 5.4:+44804529 | MS.gene63039:CDS |
| GTTGGGACAGTCAATGGGTG+GGG | 0.483592 | 5.4:+44805266 | MS.gene63039:CDS |
| TTCTAGAATATGCAAAATCA+AGG | 0.484935 | 5.4:-44803680 | None:intergenic |
| ACAGCTTGAATTCTATCATC+AGG | 0.488263 | 5.4:-44807291 | None:intergenic |
| GACTGTCCCAACAGAATTCG+AGG | 0.492733 | 5.4:-44805255 | None:intergenic |
| TTGATTGGAGTTCCTGACTC+TGG | 0.493591 | 5.4:-44804541 | None:intergenic |
| TTGTTGTATATGGGAGAGAA+AGG | 0.494964 | 5.4:-44803522 | None:intergenic |
| AGAATTACCTCGAATTCTGT+TGG | 0.496124 | 5.4:+44805248 | MS.gene63039:CDS |
| GAATTACCTCGAATTCTGTT+GGG | 0.504429 | 5.4:+44805249 | MS.gene63039:CDS |
| AAGAGAAAAGCACCAATTGA+AGG | 0.506066 | 5.4:+44803621 | MS.gene63039:CDS |
| TTCATGATGACATTGTCTCA+TGG | 0.511182 | 5.4:+44807313 | MS.gene63039:CDS |
| TATGGGAGAGAAAGGTATGA+AGG | 0.513732 | 5.4:-44803514 | None:intergenic |
| TTGTTAAGTAGTGGTATGAA+AGG | 0.518878 | 5.4:+44804479 | MS.gene63039:intron |
| TCTTCTGCTCTGATTCCAGC+AGG | 0.519878 | 5.4:-44804324 | None:intergenic |
| GATAATCCACGACTTAAAAC+CGG | 0.523327 | 5.4:+44806785 | MS.gene63039:CDS |
| CTGTTGGGACAGTCAATGGG+TGG | 0.538452 | 5.4:+44805264 | MS.gene63039:CDS |
| CGAGGAGAATTGCTGCATCT+GGG | 0.538646 | 5.4:+44804865 | MS.gene63039:CDS |
| CACCCTTAGAAGTTCCATGC+CGG | 0.547785 | 5.4:-44806804 | None:intergenic |
| CCTTCCGAAAGTCCAAAACC+TGG | 0.548288 | 5.4:-44804912 | None:intergenic |
| ATTCTGTTGGGACAGTCAAT+GGG | 0.553398 | 5.4:+44805261 | MS.gene63039:CDS |
| AATTGAGTCAAAAGTAGAGA+AGG | 0.554168 | 5.4:+44806835 | MS.gene63039:CDS |
| ACCACCTGATGCAGTAATGA+AGG | 0.558767 | 5.4:+44806210 | MS.gene63039:CDS |
| AATGAGCTTACTTTACACAT+TGG | 0.565047 | 5.4:-44805351 | None:intergenic |
| GGACTTTCGGAAGGATTGCA+TGG | 0.566424 | 5.4:+44804921 | MS.gene63039:CDS |
| AGAGTCAGGAACTCCAATCA+AGG | 0.570762 | 5.4:+44804543 | MS.gene63039:CDS |
| TCTTCATGGAGCAGCAGACA+AGG | 0.573213 | 5.4:+44807164 | MS.gene63039:CDS |
| AACCGGCATGGAACTTCTAA+GGG | 0.578665 | 5.4:+44806802 | MS.gene63039:CDS |
| TGTTGGGACAGTCAATGGGT+GGG | 0.587846 | 5.4:+44805265 | MS.gene63039:CDS |
| GTGGTATGAAAGGAATTCGA+GGG | 0.591527 | 5.4:+44804489 | MS.gene63039:intron |
| TCCACGACTTAAAACCGGCA+TGG | 0.593411 | 5.4:+44806790 | MS.gene63039:CDS |
| CTCTGAAAGCCAGTTCAGCA+AGG | 0.602732 | 5.4:-44806288 | None:intergenic |
| GTATGAAAATGCATCTAGCA+AGG | 0.604169 | 5.4:+44807215 | MS.gene63039:CDS |
| AGTGGTATGAAAGGAATTCG+AGG | 0.622926 | 5.4:+44804488 | MS.gene63039:intron |
| TGGTATGAAAGGAATTCGAG+GGG | 0.632293 | 5.4:+44804490 | MS.gene63039:CDS |
| GCCTTCATTACTGCATCAGG+TGG | 0.660106 | 5.4:-44806211 | None:intergenic |
| GTTCCCCTTCCAAAATGCAG+TGG | 0.684497 | 5.4:-44807269 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAAAAATCTAAAGA+TGG | - | chr5.4:44803824-44803843 | None:intergenic | 10.0% |
| !! | TTAAATCTATATTGTAATAA+TGG | + | chr5.4:44806415-44806434 | MS.gene63039:intron | 10.0% |
| !! | ATTAAACATAATGGTATTAT+TGG | + | chr5.4:44805488-44805507 | MS.gene63039:intron | 15.0% |
| !! | ATTATTGTTTCAAACTATAT+AGG | + | chr5.4:44805458-44805477 | MS.gene63039:intron | 15.0% |
| !! | TAGAATATAATTATATGTGT+TGG | - | chr5.4:44803950-44803969 | None:intergenic | 15.0% |
| !!! | AAAAAACAATGAATTTTGTA+TGG | + | chr5.4:44807103-44807122 | MS.gene63039:intron | 15.0% |
| !!! | ATTTGTTGAACATAATAAAA+CGG | - | chr5.4:44804369-44804388 | None:intergenic | 15.0% |
| !!! | TAACTTTTATTTTGTTTGAT+TGG | + | chr5.4:44804420-44804439 | MS.gene63039:intron | 15.0% |
| !!! | TCATTTTCCTAAATTATTAT+TGG | + | chr5.4:44804163-44804182 | MS.gene63039:intron | 15.0% |
| !!! | TCTATTTTCTCAAATATTAT+TGG | - | chr5.4:44805092-44805111 | None:intergenic | 15.0% |
| !! | ACACAAAATAGAATAGAAAT+GGG | - | chr5.4:44804240-44804259 | None:intergenic | 20.0% |
| !! | ACATCAAAAGAAAGTAAAAA+AGG | - | chr5.4:44806888-44806907 | None:intergenic | 20.0% |
| !! | ACCTGAATAAAAAATCAAAA+AGG | - | chr5.4:44804841-44804860 | None:intergenic | 20.0% |
| !! | CCTGAATAAAAAATCAAAAA+GGG | - | chr5.4:44804840-44804859 | None:intergenic | 20.0% |
| !! | TAAAATAATCTGATACATCT+CGG | - | chr5.4:44806065-44806084 | None:intergenic | 20.0% |
| !! | TACACAAAATAGAATAGAAA+TGG | - | chr5.4:44804241-44804260 | None:intergenic | 20.0% |
| !! | TCATAACAAATAACATTGTA+AGG | - | chr5.4:44806764-44806783 | None:intergenic | 20.0% |
| !! | TTTAACTACAATCTAATCAA+TGG | + | chr5.4:44806535-44806554 | MS.gene63039:intron | 20.0% |
| !!! | ATTATTGAGTTTTGTTGTAA+AGG | - | chr5.4:44803568-44803587 | None:intergenic | 20.0% |
| !!! | TAATTATATTCTAAGAAGCA+CGG | + | chr5.4:44803957-44803976 | MS.gene63039:intron | 20.0% |
| !!! | TGAAAATGTTTCTTTTAGAA+TGG | + | chr5.4:44804688-44804707 | MS.gene63039:intron | 20.0% |
| !!! | TGATTTTATTTGTTAAGTAG+TGG | + | chr5.4:44804470-44804489 | MS.gene63039:intron | 20.0% |
| !!! | TTACAATGTTATTTGTTATG+AGG | + | chr5.4:44806763-44806782 | MS.gene63039:CDS | 20.0% |
| !!! | TTATTGAGTTTTGTTGTAAA+GGG | - | chr5.4:44803567-44803586 | None:intergenic | 20.0% |
| !!! | TTTTGAAGTTTCTTAAAAGT+CGG | + | chr5.4:44804769-44804788 | MS.gene63039:intron | 20.0% |
| !!! | TTTTTTAGGTAAATGTTAGT+TGG | + | chr5.4:44803856-44803875 | MS.gene63039:intron | 20.0% |
| ! | ATATTTAGTGCAACACATAA+AGG | - | chr5.4:44806565-44806584 | None:intergenic | 25.0% |
| ! | ATTAATCTATACCTCTGTTA+AGG | + | chr5.4:44805580-44805599 | MS.gene63039:intron | 25.0% |
| ! | GAGCATTATACACAAATAAA+AGG | + | chr5.4:44804984-44805003 | MS.gene63039:CDS | 25.0% |
| ! | GGAGTCTATATTAAACATAA+TGG | + | chr5.4:44805479-44805498 | MS.gene63039:intron | 25.0% |
| ! | TAATCTGTTTGCTTATTAAC+TGG | + | chr5.4:44805553-44805572 | MS.gene63039:intron | 25.0% |
| ! | TCAATATAATCTATGAAGCA+CGG | - | chr5.4:44804137-44804156 | None:intergenic | 25.0% |
| ! | TGATTCATTGTGTGAAAATT+GGG | + | chr5.4:44804735-44804754 | MS.gene63039:intron | 25.0% |
| ! | TTAGAAATGCATATTATGAC+CGG | - | chr5.4:44805985-44806004 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTACAAATGT+CGG | + | chr5.4:44804048-44804067 | MS.gene63039:intron | 25.0% |
| ! | TTCGCTTAAAGTTTATTTGA+AGG | + | chr5.4:44805293-44805312 | MS.gene63039:CDS | 25.0% |
| ! | TTGTAGTTAAACTACAGATA+TGG | - | chr5.4:44806526-44806545 | None:intergenic | 25.0% |
| !! | ATAATTATATGTGTTGGTGT+CGG | - | chr5.4:44803944-44803963 | None:intergenic | 25.0% |
| !! | ATCCTTGTGTTATTCTTTAT+AGG | + | chr5.4:44806736-44806755 | MS.gene63039:intron | 25.0% |
| !! | ATGAATTTTGTATGGTTGAT+TGG | + | chr5.4:44807111-44807130 | MS.gene63039:intron | 25.0% |
| !! | CTAACCAATTTTCTTTTACT+CGG | - | chr5.4:44806316-44806335 | None:intergenic | 25.0% |
| !! | TGAATTTTGTATGGTTGATT+GGG | + | chr5.4:44807112-44807131 | MS.gene63039:intron | 25.0% |
| !! | TTTGAAGTTTCTTAAAAGTC+GGG | + | chr5.4:44804770-44804789 | MS.gene63039:intron | 25.0% |
| !!! | ACTTTAAAGCTCTATGAAAA+TGG | + | chr5.4:44807243-44807262 | MS.gene63039:CDS | 25.0% |
| !!! | ATTTTGCATATTCTAGAAGA+AGG | + | chr5.4:44803685-44803704 | MS.gene63039:CDS | 25.0% |
| !!! | CCCTTTTTGATTTTTTATTC+AGG | + | chr5.4:44804837-44804856 | MS.gene63039:intron | 25.0% |
| !!! | TGATTTGCTCAATTTATTAG+CGG | + | chr5.4:44807002-44807021 | MS.gene63039:intron | 25.0% |
| !!! | TTCTAGAATATGCAAAATCA+AGG | - | chr5.4:44803683-44803702 | None:intergenic | 25.0% |
| !!! | TTTTGCATATTCTAGAAGAA+GGG | + | chr5.4:44803686-44803705 | MS.gene63039:CDS | 25.0% |
| AAAACCCAAACTTCATGTAA+AGG | - | chr5.4:44805842-44805861 | None:intergenic | 30.0% | |
| AAACCCAAACTTCATGTAAA+GGG | - | chr5.4:44805841-44805860 | None:intergenic | 30.0% | |
| AAGAGGTCAAATATGTTTGT+TGG | + | chr5.4:44805770-44805789 | MS.gene63039:intron | 30.0% | |
| AATGAGCTTACTTTACACAT+TGG | - | chr5.4:44805354-44805373 | None:intergenic | 30.0% | |
| AATTGAGTCAAAAGTAGAGA+AGG | + | chr5.4:44806835-44806854 | MS.gene63039:CDS | 30.0% | |
| ACTGATACGTCACAATTTAA+AGG | - | chr5.4:44806118-44806137 | None:intergenic | 30.0% | |
| AGAACCGAGTAAAAGAAAAT+TGG | + | chr5.4:44806309-44806328 | MS.gene63039:CDS | 30.0% | |
| AGCCTATAAAGAATAACACA+AGG | - | chr5.4:44806741-44806760 | None:intergenic | 30.0% | |
| AGGATGTTAAGTTCTTTGAT+TGG | - | chr5.4:44803497-44803516 | None:intergenic | 30.0% | |
| AGTTCAACTTTCCTATAGAT+TGG | - | chr5.4:44805635-44805654 | None:intergenic | 30.0% | |
| ATAATGAAGTTGTTGAGCAT+TGG | - | chr5.4:44805394-44805413 | None:intergenic | 30.0% | |
| CTGATACGTCACAATTTAAA+GGG | - | chr5.4:44806117-44806136 | None:intergenic | 30.0% | |
| GAAATCATATGCAAGAGAAA+TGG | - | chr5.4:44806365-44806384 | None:intergenic | 30.0% | |
| GTCATAATTTGAATGCTAAG+TGG | + | chr5.4:44805608-44805627 | MS.gene63039:intron | 30.0% | |
| GTCATGCTTTCTATGAAATA+AGG | - | chr5.4:44805741-44805760 | None:intergenic | 30.0% | |
| GTCGACACCAATAATAATTT+AGG | - | chr5.4:44804173-44804192 | None:intergenic | 30.0% | |
| GTGATTCATTGTGTGAAAAT+TGG | + | chr5.4:44804734-44804753 | MS.gene63039:intron | 30.0% | |
| GTTCAACTTTCCTATAGATT+GGG | - | chr5.4:44805634-44805653 | None:intergenic | 30.0% | |
| TCGACGAAAGTTACAAATTT+GGG | + | chr5.4:44804800-44804819 | MS.gene63039:intron | 30.0% | |
| TCTATGTTATCAGACAACAT+AGG | + | chr5.4:44804629-44804648 | MS.gene63039:intron | 30.0% | |
| TTAGTTCCTTGTAACATGTA+AGG | + | chr5.4:44805800-44805819 | MS.gene63039:intron | 30.0% | |
| TTCAAAGGGTTGTTGTATAT+GGG | - | chr5.4:44803534-44803553 | None:intergenic | 30.0% | |
| TTCGACGAAAGTTACAAATT+TGG | + | chr5.4:44804799-44804818 | MS.gene63039:intron | 30.0% | |
| TTGAAGTTTCTTAAAAGTCG+GGG | + | chr5.4:44804771-44804790 | MS.gene63039:intron | 30.0% | |
| TTGAATTTACTCTCCAGATA+TGG | + | chr5.4:44806468-44806487 | MS.gene63039:intron | 30.0% | |
| TTGTTAAGTAGTGGTATGAA+AGG | + | chr5.4:44804479-44804498 | MS.gene63039:intron | 30.0% | |
| ! | AAGGGTAATTGATTCTTCAA+AGG | - | chr5.4:44803549-44803568 | None:intergenic | 30.0% |
| ! | AGGGTAATTGATTCTTCAAA+GGG | - | chr5.4:44803548-44803567 | None:intergenic | 30.0% |
| ! | TACAGAAATTTGCTCACTAA+TGG | - | chr5.4:44807198-44807217 | None:intergenic | 30.0% |
| ! | TCGTTGAGATGTTAACATTT+TGG | + | chr5.4:44805941-44805960 | MS.gene63039:intron | 30.0% |
| !! | TTCTTTGATCTGTTTTTCCT+AGG | + | chr5.4:44804296-44804315 | MS.gene63039:intron | 30.0% |
| !!! | ACTGTTAGTTTTGTTGTCTT+TGG | - | chr5.4:44803594-44803613 | None:intergenic | 30.0% |
| !!! | GTTTCTTTTAGAATGGTCTT+TGG | + | chr5.4:44804695-44804714 | MS.gene63039:intron | 30.0% |
| AACCAAAATGTTGCAATGCA+AGG | - | chr5.4:44806671-44806690 | None:intergenic | 35.0% | |
| ACAGCTTGAATTCTATCATC+AGG | - | chr5.4:44807294-44807313 | None:intergenic | 35.0% | |
| ACATGCACATTCTTCTTTGA+AGG | + | chr5.4:44804598-44804617 | MS.gene63039:CDS | 35.0% | |
| AGAATGCTTTAGTGATGATC+TGG | + | chr5.4:44805881-44805900 | MS.gene63039:intron | 35.0% | |
| AGAATGGTCTTTGGATGTTT+AGG | + | chr5.4:44804704-44804723 | MS.gene63039:intron | 35.0% | |
| AGAATTACCTCGAATTCTGT+TGG | + | chr5.4:44805248-44805267 | MS.gene63039:CDS | 35.0% | |
| ATTTGAAGGAGCCAGATAAT+TGG | + | chr5.4:44805307-44805326 | MS.gene63039:CDS | 35.0% | |
| CAAACTTCATGTAAAGGGAT+CGG | - | chr5.4:44805836-44805855 | None:intergenic | 35.0% | |
| CGACGAAAGTTACAAATTTG+GGG | + | chr5.4:44804801-44804820 | MS.gene63039:intron | 35.0% | |
| CTTCAAAGGGTTGTTGTATA+TGG | - | chr5.4:44803535-44803554 | None:intergenic | 35.0% | |
| GAATGGTCTTTGGATGTTTA+GGG | + | chr5.4:44804705-44804724 | MS.gene63039:intron | 35.0% | |
| GAATTACCTCGAATTCTGTT+GGG | + | chr5.4:44805249-44805268 | MS.gene63039:CDS | 35.0% | |
| GACCTGAATTCAATATTGAC+CGG | + | chr5.4:44805963-44805982 | MS.gene63039:intron | 35.0% | |
| GACGAAAGTTACAAATTTGG+GGG | + | chr5.4:44804802-44804821 | MS.gene63039:intron | 35.0% | |
| GATAATCCACGACTTAAAAC+CGG | + | chr5.4:44806785-44806804 | MS.gene63039:CDS | 35.0% | |
| GATCCCTTTACATGAAGTTT+GGG | + | chr5.4:44805835-44805854 | MS.gene63039:intron | 35.0% | |
| GCTCCATGAAGAATCAATAA+TGG | - | chr5.4:44807156-44807175 | None:intergenic | 35.0% | |
| GCTTGATCATTGCTTGTTTA+AGG | + | chr5.4:44803740-44803759 | MS.gene63039:CDS | 35.0% | |
| GTATGAAAATGCATCTAGCA+AGG | + | chr5.4:44807215-44807234 | MS.gene63039:CDS | 35.0% | |
| TATGAAGCACATACATTCCT+CGG | + | chr5.4:44806924-44806943 | MS.gene63039:intron | 35.0% | |
| TATGACAAAGTCCTTAACAG+AGG | - | chr5.4:44805594-44805613 | None:intergenic | 35.0% | |
| TCAACAAGATCATCGAAGTT+TGG | - | chr5.4:44804954-44804973 | None:intergenic | 35.0% | |
| TGAAGATGCAGATCATGTTA+AGG | + | chr5.4:44806020-44806039 | MS.gene63039:intron | 35.0% | |
| TGAAGTTTCTTAAAAGTCGG+GGG | + | chr5.4:44804772-44804791 | MS.gene63039:intron | 35.0% | |
| TGACGTATCAGTTTAACAGT+TGG | + | chr5.4:44806126-44806145 | MS.gene63039:intron | 35.0% | |
| TGGTCAAGATGAAAAGTCAA+AGG | - | chr5.4:44803774-44803793 | None:intergenic | 35.0% | |
| TTCATGATGACATTGTCTCA+TGG | + | chr5.4:44807313-44807332 | MS.gene63039:CDS | 35.0% | |
| TTGTTGTATATGGGAGAGAA+AGG | - | chr5.4:44803525-44803544 | None:intergenic | 35.0% | |
| TTTGAAGGAGCCAGATAATT+GGG | + | chr5.4:44805308-44805327 | MS.gene63039:CDS | 35.0% | |
| ! | AAATGGTTACCACTGCATTT+TGG | + | chr5.4:44807260-44807279 | MS.gene63039:CDS | 35.0% |
| ! | AACAATTTGAAGCCTGACAT+TGG | - | chr5.4:44803794-44803813 | None:intergenic | 35.0% |
| ! | CATTGGTAACAATACAAACG+AGG | - | chr5.4:44805377-44805396 | None:intergenic | 35.0% |
| ! | TATTCTAAGAAGCACGGATA+CGG | + | chr5.4:44803963-44803982 | MS.gene63039:intron | 35.0% |
| ! | TGGCGACAATGTTGATATTT+TGG | - | chr5.4:44806506-44806525 | None:intergenic | 35.0% |
| ! | TTTTCATCTTGACCAATGTC+AGG | + | chr5.4:44803779-44803798 | MS.gene63039:intron | 35.0% |
| !! | AAGAGAAAAGCACCAATTGA+AGG | + | chr5.4:44803621-44803640 | MS.gene63039:CDS | 35.0% |
| !! | GCACCATTATTGATTCTTCA+TGG | + | chr5.4:44807150-44807169 | MS.gene63039:CDS | 35.0% |
| !! | GTGTGTTTTTGTCATGGATA+TGG | + | chr5.4:44804571-44804590 | MS.gene63039:CDS | 35.0% |
| !!! | TGGAAATTTTTTGCAAGAGC+TGG | + | chr5.4:44804515-44804534 | MS.gene63039:CDS | 35.0% |
| !!! | TTTTTTATTCAGGTGTTGCG+AGG | + | chr5.4:44804847-44804866 | MS.gene63039:intron | 35.0% |
| AAACAAAGACCTTGCTGAAC+TGG | + | chr5.4:44806279-44806298 | MS.gene63039:CDS | 40.0% | |
| AAACACACAGATGCCTTGAT+TGG | - | chr5.4:44804559-44804578 | None:intergenic | 40.0% | |
| AATTCTGTTGGGACAGTCAA+TGG | + | chr5.4:44805260-44805279 | MS.gene63039:CDS | 40.0% | |
| ACATCATCTGCAATCTTACC+AGG | - | chr5.4:44806187-44806206 | None:intergenic | 40.0% | |
| AGCATGACAGAGAAAGAAAG+AGG | + | chr5.4:44805753-44805772 | MS.gene63039:intron | 40.0% | |
| AGTGGTATGAAAGGAATTCG+AGG | + | chr5.4:44804488-44804507 | MS.gene63039:intron | 40.0% | |
| AGTTCAGCAAGGTCTTTGTT+TGG | - | chr5.4:44806280-44806299 | None:intergenic | 40.0% | |
| ATCACAGCATCCCAATTATC+TGG | - | chr5.4:44805321-44805340 | None:intergenic | 40.0% | |
| ATCATGTGAGATGTGATACG+TGG | + | chr5.4:44805662-44805681 | MS.gene63039:intron | 40.0% | |
| ATGCTGAAACCTATGAAGCA+CGG | - | chr5.4:44807063-44807082 | None:intergenic | 40.0% | |
| ATGGTTGATTGGGTTATGTC+AGG | + | chr5.4:44807122-44807141 | MS.gene63039:intron | 40.0% | |
| ATTCTGTTGGGACAGTCAAT+GGG | + | chr5.4:44805261-44805280 | MS.gene63039:CDS | 40.0% | |
| ATTCTTCCCATTTCCTCTTC+TGG | - | chr5.4:44805866-44805885 | None:intergenic | 40.0% | |
| CATTGTGTGAAAATTGGGTG+TGG | + | chr5.4:44804740-44804759 | MS.gene63039:intron | 40.0% | |
| CGAAGACCTTACATGTTACA+AGG | - | chr5.4:44805809-44805828 | None:intergenic | 40.0% | |
| CGAGGTAATTCTCTCATATC+AGG | - | chr5.4:44805240-44805259 | None:intergenic | 40.0% | |
| CGATCCCTTTACATGAAGTT+TGG | + | chr5.4:44805834-44805853 | MS.gene63039:intron | 40.0% | |
| CGTATCAGTTTAACAGTTGG+AGG | + | chr5.4:44806129-44806148 | MS.gene63039:intron | 40.0% | |
| CTGGATAGGTTTCAAAGACA+TGG | + | chr5.4:44805174-44805193 | MS.gene63039:intron | 40.0% | |
| GAAGTTTCTTAAAAGTCGGG+GGG | + | chr5.4:44804773-44804792 | MS.gene63039:intron | 40.0% | |
| GACCGGTCAATATTGAATTC+AGG | - | chr5.4:44805968-44805987 | None:intergenic | 40.0% | |
| GAGGAATGTATGTGCTTCAT+AGG | - | chr5.4:44806925-44806944 | None:intergenic | 40.0% | |
| GGAGTATGTGTTTCATAGGT+TGG | + | chr5.4:44804201-44804220 | MS.gene63039:intron | 40.0% | |
| GTGGTATGAAAGGAATTCGA+GGG | + | chr5.4:44804489-44804508 | MS.gene63039:intron | 40.0% | |
| TCAGCAGACACACCTATAAT+CGG | + | chr5.4:44805140-44805159 | MS.gene63039:intron | 40.0% | |
| TCATGTGAGATGTGATACGT+GGG | + | chr5.4:44805663-44805682 | MS.gene63039:intron | 40.0% | |
| TCCTTGAACCTTGTAACCTA+GGG | + | chr5.4:44805690-44805709 | MS.gene63039:intron | 40.0% | |
| TCTTCACTCACACCTTCAAT+TGG | - | chr5.4:44803636-44803655 | None:intergenic | 40.0% | |
| TGGTATGAAAGGAATTCGAG+GGG | + | chr5.4:44804490-44804509 | MS.gene63039:CDS | 40.0% | |
| TTACTCTCCAGATATGGTTG+TGG | + | chr5.4:44806474-44806493 | MS.gene63039:intron | 40.0% | |
| TTCCTTGAACCTTGTAACCT+AGG | + | chr5.4:44805689-44805708 | MS.gene63039:intron | 40.0% | |
| TTCTTCCCATTTCCTCTTCT+GGG | - | chr5.4:44805865-44805884 | None:intergenic | 40.0% | |
| TTGTCTCATGGCTTGATTCT+AGG | + | chr5.4:44807325-44807344 | MS.gene63039:CDS | 40.0% | |
| ! | CAGTTTCAAGTGTAGTGTCA+GGG | - | chr5.4:44805060-44805079 | None:intergenic | 40.0% |
| ! | CTGAGGAGTATGTGTTTCAT+AGG | + | chr5.4:44804197-44804216 | MS.gene63039:intron | 40.0% |
| ! | GTTCAGCAAGGTCTTTGTTT+GGG | - | chr5.4:44806279-44806298 | None:intergenic | 40.0% |
| ! | GTTTTCCCAGAAGAGGAAAT+GGG | + | chr5.4:44805857-44805876 | MS.gene63039:intron | 40.0% |
| ! | TATGGGAGAGAAAGGTATGA+AGG | - | chr5.4:44803517-44803536 | None:intergenic | 40.0% |
| ! | TCAGTTTCAAGTGTAGTGTC+AGG | - | chr5.4:44805061-44805080 | None:intergenic | 40.0% |
| ! | TGCCTTGCATTGCAACATTT+TGG | + | chr5.4:44806666-44806685 | MS.gene63039:intron | 40.0% |
| ! | TTTGAAGCACATATACTCCC+CGG | + | chr5.4:44803883-44803902 | MS.gene63039:intron | 40.0% |
| ! | TTTGGGAAGAGCTTTGCTTT+TGG | - | chr5.4:44806262-44806281 | None:intergenic | 40.0% |
| !! | GCATCTGTGTGTTTTTGTCA+TGG | + | chr5.4:44804565-44804584 | MS.gene63039:CDS | 40.0% |
| !! | GTTACCACTGCATTTTGGAA+GGG | + | chr5.4:44807265-44807284 | MS.gene63039:CDS | 40.0% |
| !! | TACAAATGTCGGTGTCATGT+CGG | + | chr5.4:44804059-44804078 | MS.gene63039:intron | 40.0% |
| !! | TTACCACTGCATTTTGGAAG+GGG | + | chr5.4:44807266-44807285 | MS.gene63039:CDS | 40.0% |
| !!! | CTATCCAGGTTTTGGACTTT+CGG | + | chr5.4:44804908-44804927 | MS.gene63039:CDS | 40.0% |
| AAACCGGCATGGAACTTCTA+AGG | + | chr5.4:44806801-44806820 | MS.gene63039:CDS | 45.0% | |
| AACCGGCATGGAACTTCTAA+GGG | + | chr5.4:44806802-44806821 | MS.gene63039:CDS | 45.0% | |
| AACGCCTTCATTACTGCATC+AGG | - | chr5.4:44806217-44806236 | None:intergenic | 45.0% | |
| ACAAGTTTCAGTAGCTCCCT+AGG | - | chr5.4:44805709-44805728 | None:intergenic | 45.0% | |
| ACCACCTGATGCAGTAATGA+AGG | + | chr5.4:44806210-44806229 | MS.gene63039:CDS | 45.0% | |
| AGAGTCAGGAACTCCAATCA+AGG | + | chr5.4:44804543-44804562 | MS.gene63039:CDS | 45.0% | |
| CACGATATGTGTCTGATCTC+AGG | - | chr5.4:44803920-44803939 | None:intergenic | 45.0% | |
| CATGTGAGATGTGATACGTG+GGG | + | chr5.4:44805664-44805683 | MS.gene63039:intron | 45.0% | |
| GAAGTCTCCACAACCATATC+TGG | - | chr5.4:44806484-44806503 | None:intergenic | 45.0% | |
| GCACATACATTCCTCGGATT+AGG | + | chr5.4:44806930-44806949 | MS.gene63039:intron | 45.0% | |
| GTTTAAGCTGCGTGACTAGT+AGG | - | chr5.4:44806636-44806655 | None:intergenic | 45.0% | |
| TCCCTAGGTTACAAGGTTCA+AGG | - | chr5.4:44805694-44805713 | None:intergenic | 45.0% | |
| TGAAAGGAATTCGAGGGGAT+TGG | + | chr5.4:44804495-44804514 | MS.gene63039:CDS | 45.0% | |
| TGCTAAGTGGCCCAATCTAT+AGG | + | chr5.4:44805621-44805640 | MS.gene63039:intron | 45.0% | |
| TGTCTGTATCCGTGCTTCAT+AGG | + | chr5.4:44807051-44807070 | MS.gene63039:intron | 45.0% | |
| TTGATTGGAGTTCCTGACTC+TGG | - | chr5.4:44804544-44804563 | None:intergenic | 45.0% | |
| ! | ACACCTATAATCGGAGGTGT+CGG | + | chr5.4:44805149-44805168 | MS.gene63039:intron | 45.0% |
| ! | GGTTACCACTGCATTTTGGA+AGG | + | chr5.4:44807264-44807283 | MS.gene63039:CDS | 45.0% |
| ! | GGTTTTCCCAGAAGAGGAAA+TGG | + | chr5.4:44805856-44805875 | MS.gene63039:intron | 45.0% |
| !! | AGTTTGGGTTTTCCCAGAAG+AGG | + | chr5.4:44805850-44805869 | MS.gene63039:intron | 45.0% |
| !! | GACTTGCTGATTTGTGTTCC+TGG | + | chr5.4:44806166-44806185 | MS.gene63039:intron | 45.0% |
| !!! | GTTTTTGCGATGGACTATCC+AGG | + | chr5.4:44804894-44804913 | MS.gene63039:CDS | 45.0% |
| !!! | TGGGTATGCTGTTTTTGCGA+TGG | + | chr5.4:44804884-44804903 | MS.gene63039:CDS | 45.0% |
| !!! | TTTTTTTTTTTACTTTTTTT+AGG | + | chr5.4:44803842-44803861 | MS.gene63039:intron | 5.0% |
| ACGGATACAGACACGTACAC+CGG | - | chr5.4:44807044-44807063 | None:intergenic | 50.0% | |
| ATCTCAGGACGCGTCTAATC+CGG | - | chr5.4:44803905-44803924 | None:intergenic | 50.0% | |
| CACCCTTAGAAGTTCCATGC+CGG | - | chr5.4:44806807-44806826 | None:intergenic | 50.0% | |
| CAGTAGCTCCCTAGGTTACA+AGG | - | chr5.4:44805701-44805720 | None:intergenic | 50.0% | |
| CCTTCCGAAAGTCCAAAACC+TGG | - | chr5.4:44804915-44804934 | None:intergenic | 50.0% | |
| CGAGGAGAATTGCTGCATCT+GGG | + | chr5.4:44804865-44804884 | MS.gene63039:CDS | 50.0% | |
| GACTGTCCCAACAGAATTCG+AGG | - | chr5.4:44805258-44805277 | None:intergenic | 50.0% | |
| GCAGACACACCTATAATCGG+AGG | + | chr5.4:44805143-44805162 | MS.gene63039:intron | 50.0% | |
| GCCTTCATTACTGCATCAGG+TGG | - | chr5.4:44806214-44806233 | None:intergenic | 50.0% | |
| GGACTTTCGGAAGGATTGCA+TGG | + | chr5.4:44804921-44804940 | MS.gene63039:CDS | 50.0% | |
| GTTCCCCTTCCAAAATGCAG+TGG | - | chr5.4:44807272-44807291 | None:intergenic | 50.0% | |
| TACGGACACAAGACACGACA+CGG | + | chr5.4:44803981-44804000 | MS.gene63039:intron | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | chr5.4:44804126-44804145 | None:intergenic | 50.0% | |
| TCCACGACTTAAAACCGGCA+TGG | + | chr5.4:44806790-44806809 | MS.gene63039:CDS | 50.0% | |
| TCTTCATGGAGCAGCAGACA+AGG | + | chr5.4:44807164-44807183 | MS.gene63039:CDS | 50.0% | |
| TCTTCTGCTCTGATTCCAGC+AGG | - | chr5.4:44804327-44804346 | None:intergenic | 50.0% | |
| TGTTGGGACAGTCAATGGGT+GGG | + | chr5.4:44805265-44805284 | MS.gene63039:CDS | 50.0% | |
| ! | CTCTGAAAGCCAGTTCAGCA+AGG | - | chr5.4:44806291-44806310 | None:intergenic | 50.0% |
| ! | TGTCTGCTGACTGACACACA+TGG | - | chr5.4:44805130-44805149 | None:intergenic | 50.0% |
| ! | TTTTCCTAGGATGCTCCTGC+TGG | + | chr5.4:44804309-44804328 | MS.gene63039:intron | 50.0% |
| !! | TATTGGTGTCGACGTGTCTG+AGG | + | chr5.4:44804180-44804199 | MS.gene63039:intron | 50.0% |
| !!! | CCAGGTTTTGGACTTTCGGA+AGG | + | chr5.4:44804912-44804931 | MS.gene63039:CDS | 50.0% |
| !!! | GCGATGGACTATCCAGGTTT+TGG | + | chr5.4:44804900-44804919 | MS.gene63039:CDS | 50.0% |
| !!! | TCCATGCCGGTTTTAAGTCG+TGG | - | chr5.4:44806794-44806813 | None:intergenic | 50.0% |
| AAGAGCTGGATGCCAGAGTC+AGG | + | chr5.4:44804529-44804548 | MS.gene63039:CDS | 55.0% | |
| ACACGACACGTGTCTGACAC+CGG | + | chr5.4:44804088-44804107 | MS.gene63039:intron | 55.0% | |
| CTGTTGGGACAGTCAATGGG+TGG | + | chr5.4:44805264-44805283 | MS.gene63039:CDS | 55.0% | |
| GCGAGGAGAATTGCTGCATC+TGG | + | chr5.4:44804864-44804883 | MS.gene63039:CDS | 55.0% | |
| GTTGGGACAGTCAATGGGTG+GGG | + | chr5.4:44805266-44805285 | MS.gene63039:CDS | 55.0% | |
| TCTCAGGACGCGTCTAATCC+GGG | - | chr5.4:44803904-44803923 | None:intergenic | 55.0% | |
| TGTCGAAACGTGTCCGACAG+CGG | - | chr5.4:44806962-44806981 | None:intergenic | 55.0% | |
| ! | GCACCGACACCTCCGATTAT+AGG | - | chr5.4:44805155-44805174 | None:intergenic | 55.0% |
| !! | ATAATCGGAGGTGTCGGTGC+TGG | + | chr5.4:44805155-44805174 | MS.gene63039:intron | 55.0% |
| !! | GATTCCAGCAGGAGCATCCT+AGG | - | chr5.4:44804316-44804335 | None:intergenic | 55.0% |
| !! | TGTCGGTGTCATGTCGGTGT+CGG | + | chr5.4:44804065-44804084 | MS.gene63039:intron | 55.0% |
| CACGACACGTGTCTGACACC+GGG | + | chr5.4:44804089-44804108 | MS.gene63039:intron | 60.0% | |
| CTCAGGACGCGTCTAATCCG+GGG | - | chr5.4:44803903-44803922 | None:intergenic | 60.0% | |
| GATTAGGCGTGTCCCGCTGT+CGG | + | chr5.4:44806946-44806965 | MS.gene63039:intron | 60.0% | |
| GCACGGACACTCCTCGGTTT+AGG | - | chr5.4:44804120-44804139 | None:intergenic | 60.0% | |
| GTCGAAACGTGTCCGACAGC+GGG | - | chr5.4:44806961-44806980 | None:intergenic | 60.0% | |
| TCCTCGGTTTAGGCGTGTCC+CGG | - | chr5.4:44804110-44804129 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAAACCG+AGG | + | chr5.4:44804106-44804125 | MS.gene63039:intron | 65.0% | |
| AGCGGGACACGCCTAATCCG+AGG | - | chr5.4:44806944-44806963 | None:intergenic | 65.0% | |
| ! | CGGTGTCAGCGTGTCGTGTC+CGG | + | chr5.4:44807022-44807041 | MS.gene63039:intron | 65.0% |
| !! | CGGAGGTGTCGGTGCTGGAT+AGG | + | chr5.4:44805160-44805179 | MS.gene63039:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 44803468 | 44807362 | 44803468 | ID=MS.gene63039 |
| chr5.4 | mRNA | 44803468 | 44807362 | 44803468 | ID=MS.gene63039.t1;Parent=MS.gene63039 |
| chr5.4 | exon | 44803468 | 44803761 | 44803468 | ID=MS.gene63039.t1.exon1;Parent=MS.gene63039.t1 |
| chr5.4 | CDS | 44803468 | 44803761 | 44803468 | ID=cds.MS.gene63039.t1;Parent=MS.gene63039.t1 |
| chr5.4 | exon | 44804318 | 44804347 | 44804318 | ID=MS.gene63039.t1.exon2;Parent=MS.gene63039.t1 |
| chr5.4 | CDS | 44804318 | 44804347 | 44804318 | ID=cds.MS.gene63039.t1;Parent=MS.gene63039.t1 |
| chr5.4 | exon | 44804490 | 44804619 | 44804490 | ID=MS.gene63039.t1.exon3;Parent=MS.gene63039.t1 |
| chr5.4 | CDS | 44804490 | 44804619 | 44804490 | ID=cds.MS.gene63039.t1;Parent=MS.gene63039.t1 |
| chr5.4 | exon | 44804859 | 44805005 | 44804859 | ID=MS.gene63039.t1.exon4;Parent=MS.gene63039.t1 |
| chr5.4 | CDS | 44804859 | 44805005 | 44804859 | ID=cds.MS.gene63039.t1;Parent=MS.gene63039.t1 |
| chr5.4 | exon | 44805232 | 44805362 | 44805232 | ID=MS.gene63039.t1.exon5;Parent=MS.gene63039.t1 |
| chr5.4 | CDS | 44805232 | 44805362 | 44805232 | ID=cds.MS.gene63039.t1;Parent=MS.gene63039.t1 |
| chr5.4 | exon | 44806193 | 44806330 | 44806193 | ID=MS.gene63039.t1.exon6;Parent=MS.gene63039.t1 |
| chr5.4 | CDS | 44806193 | 44806330 | 44806193 | ID=cds.MS.gene63039.t1;Parent=MS.gene63039.t1 |
| chr5.4 | exon | 44806758 | 44806856 | 44806758 | ID=MS.gene63039.t1.exon7;Parent=MS.gene63039.t1 |
| chr5.4 | CDS | 44806758 | 44806856 | 44806758 | ID=cds.MS.gene63039.t1;Parent=MS.gene63039.t1 |
| chr5.4 | exon | 44807144 | 44807362 | 44807144 | ID=MS.gene63039.t1.exon8;Parent=MS.gene63039.t1 |
| chr5.4 | CDS | 44807144 | 44807362 | 44807144 | ID=cds.MS.gene63039.t1;Parent=MS.gene63039.t1 |
| Gene Sequence |
| Protein sequence |
