Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043977.t1 | XP_003589268.3 | 94.1 | 237 | 12 | 2 | 1 | 236 | 170 | 405 | 1.40E-121 | 445.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043977.t1 | Q8RYD1 | 47.5 | 120 | 60 | 3 | 2 | 119 | 39 | 157 | 2.8e-22 | 107.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043977.t1 | A0A396JGJ9 | 94.1 | 237 | 12 | 2 | 1 | 236 | 170 | 405 | 9.9e-122 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene043977.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24349 | MS.gene043977 | PPI |
| MS.gene043977 | MS.gene043976 | PPI |
| MS.gene67090 | MS.gene043977 | PPI |
| MS.gene67073 | MS.gene043977 | PPI |
| MS.gene67075 | MS.gene043977 | PPI |
| MS.gene24342 | MS.gene043977 | PPI |
| MS.gene67076 | MS.gene043977 | PPI |
| MS.gene24348 | MS.gene043977 | PPI |
| MS.gene043977 | MS.gene24349 | PPI |
| MS.gene27370 | MS.gene043977 | PPI |
| MS.gene043977 | MS.gene67090 | PPI |
| MS.gene67153 | MS.gene043977 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043977.t1 | MTR_1g021290 | 93.820 | 178 | 9 | 2 | 1 | 177 | 170 | 346 | 2.56e-112 | 326 |
| MS.gene043977.t1 | MTR_1g021290 | 73.529 | 102 | 26 | 1 | 1 | 102 | 42 | 142 | 3.63e-46 | 157 |
| MS.gene043977.t1 | MTR_1g021320 | 50.613 | 326 | 70 | 4 | 1 | 236 | 197 | 521 | 8.34e-90 | 282 |
| MS.gene043977.t1 | MTR_1g021320 | 71.074 | 121 | 34 | 1 | 1 | 121 | 40 | 159 | 5.47e-50 | 174 |
| MS.gene043977.t1 | MTR_1g021435 | 59.756 | 246 | 71 | 4 | 1 | 236 | 37 | 264 | 1.01e-86 | 261 |
| MS.gene043977.t1 | MTR_1g021440 | 51.439 | 278 | 75 | 5 | 1 | 236 | 37 | 296 | 7.81e-81 | 244 |
| MS.gene043977.t1 | MTR_1g021400 | 57.371 | 251 | 68 | 6 | 1 | 236 | 45 | 271 | 1.08e-79 | 243 |
| MS.gene043977.t1 | MTR_1g021440 | 51.439 | 278 | 75 | 5 | 1 | 236 | 37 | 296 | 3.60e-79 | 243 |
| MS.gene043977.t1 | MTR_1g021410 | 55.422 | 249 | 77 | 5 | 1 | 236 | 37 | 264 | 6.35e-77 | 236 |
| MS.gene043977.t1 | MTR_1g021440 | 51.504 | 266 | 75 | 5 | 1 | 236 | 37 | 278 | 1.95e-76 | 233 |
| MS.gene043977.t1 | MTR_1g021440 | 51.504 | 266 | 75 | 5 | 1 | 236 | 37 | 278 | 1.14e-74 | 231 |
| MS.gene043977.t1 | MTR_1g021330 | 54.086 | 257 | 73 | 8 | 1 | 233 | 41 | 276 | 1.55e-73 | 228 |
| MS.gene043977.t1 | MTR_1g021360 | 55.696 | 237 | 60 | 6 | 1 | 236 | 197 | 389 | 1.64e-71 | 226 |
| MS.gene043977.t1 | MTR_1g021360 | 72.727 | 121 | 32 | 1 | 1 | 121 | 40 | 159 | 6.05e-52 | 175 |
| MS.gene043977.t1 | MTR_1g021380 | 54.118 | 255 | 62 | 8 | 1 | 236 | 36 | 254 | 2.47e-71 | 221 |
| MS.gene043977.t1 | MTR_1g021350 | 53.623 | 207 | 66 | 6 | 1 | 178 | 36 | 241 | 8.55e-58 | 187 |
| MS.gene043977.t1 | MTR_1g021270 | 38.367 | 245 | 136 | 6 | 2 | 236 | 31 | 270 | 1.42e-36 | 135 |
| MS.gene043977.t1 | MTR_1g021500 | 40.081 | 247 | 70 | 9 | 1 | 190 | 41 | 266 | 4.55e-36 | 132 |
| MS.gene043977.t1 | MTR_1g021500 | 40.081 | 247 | 70 | 9 | 1 | 190 | 41 | 266 | 5.58e-36 | 133 |
| MS.gene043977.t1 | MTR_1g021295 | 94.915 | 59 | 3 | 0 | 178 | 236 | 73 | 131 | 1.30e-30 | 113 |
| MS.gene043977.t1 | MTR_7g050640 | 38.961 | 77 | 46 | 1 | 1 | 77 | 28 | 103 | 1.04e-12 | 63.2 |
| MS.gene043977.t1 | MTR_7g050710 | 36.782 | 87 | 53 | 2 | 2 | 88 | 29 | 113 | 3.02e-12 | 65.5 |
| MS.gene043977.t1 | MTR_7g050580 | 39.474 | 76 | 45 | 1 | 2 | 77 | 29 | 103 | 3.77e-12 | 65.1 |
| MS.gene043977.t1 | MTR_7g050720 | 30.088 | 113 | 75 | 2 | 2 | 114 | 26 | 134 | 8.50e-12 | 63.9 |
| MS.gene043977.t1 | MTR_7g050590 | 35.802 | 81 | 51 | 1 | 1 | 81 | 1 | 80 | 1.88e-11 | 62.8 |
| MS.gene043977.t1 | MTR_3g098790 | 37.662 | 77 | 47 | 1 | 1 | 77 | 28 | 103 | 3.26e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043977.t1 | AT4G33280 | 51.961 | 102 | 47 | 2 | 1 | 101 | 38 | 138 | 4.53e-29 | 110 |
| MS.gene043977.t1 | AT4G33280 | 45.455 | 121 | 63 | 3 | 1 | 119 | 38 | 157 | 1.23e-28 | 110 |
| MS.gene043977.t1 | AT4G33280 | 51.961 | 102 | 47 | 2 | 1 | 101 | 38 | 138 | 2.03e-28 | 111 |
| MS.gene043977.t1 | AT4G34400 | 36.905 | 84 | 52 | 1 | 1 | 84 | 30 | 112 | 3.61e-13 | 68.6 |
| MS.gene043977.t1 | AT4G34400 | 36.905 | 84 | 52 | 1 | 1 | 84 | 30 | 112 | 3.61e-13 | 68.6 |
Find 51 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTCCACTAGGACCTTTA+AGG | 0.191352 | 1.3:+3412979 | None:intergenic |
| CCAGAAAATGTGACCCTTAA+AGG | 0.236805 | 1.3:-3412993 | MS.gene043977:CDS |
| GATCACCAAAAGCTGCTAAT+TGG | 0.248794 | 1.3:-3412572 | MS.gene043977:CDS |
| TCTACCTTCCCACTTCTATT+CGG | 0.257101 | 1.3:+3411564 | None:intergenic |
| CACTGAATAGCTGCGGTCTT+AGG | 0.262227 | 1.3:+3412636 | None:intergenic |
| ATCACCAAAAGCTGCTAATT+GGG | 0.331816 | 1.3:-3412571 | MS.gene043977:CDS |
| GCACCCCAATTAGCAGCTTT+TGG | 0.336856 | 1.3:+3412567 | None:intergenic |
| GAGTTACATGGAAGAATATA+AGG | 0.351517 | 1.3:-3412962 | MS.gene043977:CDS |
| TGGTGATCTTCTTCTCCTCT+TGG | 0.352191 | 1.3:+3412587 | None:intergenic |
| CTACCTTCCCACTTCTATTC+GGG | 0.356067 | 1.3:+3411565 | None:intergenic |
| GCATCATCCGTGAACTGCTC+AGG | 0.396249 | 1.3:+3412663 | None:intergenic |
| TTTAACAAAATATGGAAATG+AGG | 0.449590 | 1.3:+3411461 | None:intergenic |
| ACTGAATAGCTGCGGTCTTA+GGG | 0.455599 | 1.3:+3412637 | None:intergenic |
| GTCAATACTGCTTCTAATGC+TGG | 0.468501 | 1.3:-3412693 | MS.gene043977:CDS |
| CTTCCCACTTCTATTCGGGC+TGG | 0.473485 | 1.3:+3411569 | None:intergenic |
| GAAATGAGGAGGAAAATGAT+TGG | 0.481463 | 1.3:+3411475 | None:intergenic |
| CAGTGTCCCTTCCTACCAAC+CGG | 0.487408 | 1.3:-3412618 | MS.gene043977:CDS |
| CATCATCCGTGAACTGCTCA+GGG | 0.491192 | 1.3:+3412664 | None:intergenic |
| ACGAGAACCACTGACATTGA+AGG | 0.493660 | 1.3:+3411428 | None:intergenic |
| CAATGGTGAATCGCACTTTG+AGG | 0.494915 | 1.3:-3412841 | MS.gene043977:CDS |
| AACTCCACTAGGACCTTTAA+GGG | 0.495173 | 1.3:+3412980 | None:intergenic |
| CCCCTTGTGCTGTTTGAGCA+TGG | 0.505067 | 1.3:+3412754 | None:intergenic |
| GGGTGCGAGAGCACATGCTT+GGG | 0.514835 | 1.3:-3412550 | MS.gene043977:CDS |
| CTGTTTACTTCGTGGACGGT+TGG | 0.525501 | 1.3:-3412920 | MS.gene043977:CDS |
| TGATTCCCCTGAGCAGTTCA+CGG | 0.528517 | 1.3:-3412670 | MS.gene043977:CDS |
| AAATGAGGAGGAAAATGATT+GGG | 0.529211 | 1.3:+3411476 | None:intergenic |
| GGCACTGTTTACTTCGTGGA+CGG | 0.546441 | 1.3:-3412924 | MS.gene043977:CDS |
| CACCATTGTACTTACAGACA+AGG | 0.550322 | 1.3:+3412856 | None:intergenic |
| GGGGTGCGAGAGCACATGCT+TGG | 0.551774 | 1.3:-3412551 | MS.gene043977:CDS |
| GGCCATGCTCAAACAGCACA+AGG | 0.557535 | 1.3:-3412756 | MS.gene043977:CDS |
| AAGGTCCTAGTGGAGTTACA+TGG | 0.559188 | 1.3:-3412974 | MS.gene043977:CDS |
| CCATGCTCAAACAGCACAAG+GGG | 0.563471 | 1.3:-3412754 | MS.gene043977:CDS |
| AGATGGCACTGTTTACTTCG+TGG | 0.564148 | 1.3:-3412928 | MS.gene043977:CDS |
| GCAGCCAGCCCGAATAGAAG+TGG | 0.568438 | 1.3:-3411573 | MS.gene043977:CDS |
| AACAAAATATGGAAATGAGG+AGG | 0.576763 | 1.3:+3411464 | None:intergenic |
| ATTAAAGCCTTCAATGTCAG+TGG | 0.584287 | 1.3:-3411435 | MS.gene043977:CDS |
| GCCATGCTCAAACAGCACAA+GGG | 0.608681 | 1.3:-3412755 | MS.gene043977:CDS |
| TCACCAAAAGCTGCTAATTG+GGG | 0.618986 | 1.3:-3412570 | MS.gene043977:CDS |
| ATAAGGCTGACAACTAGAGA+TGG | 0.621631 | 1.3:-3412945 | MS.gene043977:CDS |
| CAGCCAGCCCGAATAGAAGT+GGG | 0.622825 | 1.3:-3411572 | MS.gene043977:CDS |
| TTCTTCCATGTAACTCCACT+AGG | 0.623495 | 1.3:+3412969 | None:intergenic |
| GTGACCCTTAAAGGTCCTAG+TGG | 0.630968 | 1.3:-3412984 | MS.gene043977:CDS |
| AAAGTCAACAGCACTTGTTG+AGG | 0.643971 | 1.3:-3411508 | MS.gene043977:CDS |
| CAGCCCGAATAGAAGTGGGA+AGG | 0.644571 | 1.3:-3411568 | MS.gene043977:CDS |
| TTCCTTGTCTGTAAGTACAA+TGG | 0.651999 | 1.3:-3412858 | MS.gene043977:CDS |
| CAACCGGCAAAAGAACCAAG+AGG | 0.662281 | 1.3:-3412602 | MS.gene043977:CDS |
| AAGCTCCGCTGAAAATACAA+TGG | 0.674487 | 1.3:+3411538 | None:intergenic |
| ACTTGTAACAAGCAACACCC+AGG | 0.683080 | 1.3:-3412525 | MS.gene043977:intron |
| GAAGGGACACTGAATAGCTG+CGG | 0.686057 | 1.3:+3412629 | None:intergenic |
| ATCATCCGTGAACTGCTCAG+GGG | 0.723242 | 1.3:+3412665 | None:intergenic |
| CATGCTCAAACAGCACAAGG+GGG | 0.765396 | 1.3:-3412753 | MS.gene043977:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTAACCAAAAAAAAAA+TGG | + | chr1.3:3412103-3412122 | None:intergenic | 15.0% |
| !! | TTTAATATCGTAAAAGTTAA+TGG | + | chr1.3:3411978-3411997 | None:intergenic | 15.0% |
| !! | TTTACTTAAAAATGACATAT+CGG | - | chr1.3:3412234-3412253 | MS.gene043977:intron | 15.0% |
| !!! | AAAATTGATTTATTTGAACT+AGG | + | chr1.3:3412260-3412279 | None:intergenic | 15.0% |
| !!! | TTAACTTTTACGATATTAAA+TGG | - | chr1.3:3411978-3411997 | MS.gene043977:intron | 15.0% |
| !! | AATCATGAGTTACAAATAAA+AGG | + | chr1.3:3412843-3412862 | None:intergenic | 20.0% |
| !! | ATCAAATGAAAAAAGAAAAG+TGG | + | chr1.3:3412136-3412155 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAATG+AGG | + | chr1.3:3412999-3413018 | None:intergenic | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1.3:3411431-3411450 | None:intergenic | 20.0% |
| !!! | AAGAAAGAAATATTTTAACC+TGG | + | chr1.3:3411953-3411972 | None:intergenic | 20.0% |
| !!! | AGAAAGAAATATTTTAACCT+GGG | + | chr1.3:3411952-3411971 | None:intergenic | 20.0% |
| !!! | TGTTTATGTTGATGATATTA+AGG | + | chr1.3:3412607-3412626 | None:intergenic | 20.0% |
| ! | AATGAAAAAAGAAAAGTGGT+TGG | + | chr1.3:3412132-3412151 | None:intergenic | 25.0% |
| !! | AATACTACTTCTCTTCATTT+TGG | - | chr1.3:3412529-3412548 | MS.gene043977:CDS | 25.0% |
| !!! | GTAGCTAACCATTTTTTTTT+TGG | - | chr1.3:3412092-3412111 | MS.gene043977:intron | 25.0% |
| !!! | TCTTATTTTGTCGAAAAATG+CGG | - | chr1.3:3411680-3411699 | MS.gene043977:intron | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | - | chr1.3:3411632-3411651 | MS.gene043977:intron | 25.0% |
| AAATGAGGAGGAAAATGATT+GGG | + | chr1.3:3412984-3413003 | None:intergenic | 30.0% | |
| AACAAAATATGGAAATGAGG+AGG | + | chr1.3:3412996-3413015 | None:intergenic | 30.0% | |
| AAGAGAAGTAGTATTATCGA+TGG | + | chr1.3:3412524-3412543 | None:intergenic | 30.0% | |
| AGACAGTTTAATAGCCATTA+AGG | + | chr1.3:3412561-3412580 | None:intergenic | 30.0% | |
| GACAGTTTAATAGCCATTAA+GGG | + | chr1.3:3412560-3412579 | None:intergenic | 30.0% | |
| GAGTTACATGGAAGAATATA+AGG | - | chr1.3:3411495-3411514 | MS.gene043977:CDS | 30.0% | |
| GATGTTCATACATGATGTAT+CGG | - | chr1.3:3412182-3412201 | MS.gene043977:intron | 30.0% | |
| TAAGCTCTGTTATGAATATC+TGG | + | chr1.3:3412819-3412838 | None:intergenic | 30.0% | |
| TTATGTCATCCTTCACAAAT+AGG | + | chr1.3:3412430-3412449 | None:intergenic | 30.0% | |
| TTTAATAGCCATTAAGGGAA+AGG | + | chr1.3:3412555-3412574 | None:intergenic | 30.0% | |
| ! | CTTTAGTTCAAACATTCACA+AGG | + | chr1.3:3412651-3412670 | None:intergenic | 30.0% |
| !! | ACTAGATATTCGTATTGACT+GGG | + | chr1.3:3412006-3412025 | None:intergenic | 30.0% |
| AGAAGTAGTATTATCGATGG+CGG | + | chr1.3:3412521-3412540 | None:intergenic | 35.0% | |
| ATCACCAAAAGCTGCTAATT+GGG | - | chr1.3:3411886-3411905 | MS.gene043977:intron | 35.0% | |
| ATTAAAGCCTTCAATGTCAG+TGG | - | chr1.3:3413022-3413041 | MS.gene043977:CDS | 35.0% | |
| CAGAATGAAATCAAATGCAG+TGG | + | chr1.3:3412712-3412731 | None:intergenic | 35.0% | |
| GAAATGAGGAGGAAAATGAT+TGG | + | chr1.3:3412985-3413004 | None:intergenic | 35.0% | |
| GGAGAGAGGAATATATATAG+AGG | + | chr1.3:3412289-3412308 | None:intergenic | 35.0% | |
| TAGCAAACTGATACTTGTCT+AGG | - | chr1.3:3412771-3412790 | MS.gene043977:CDS | 35.0% | |
| TAGTTCAAACATTCACAAGG+AGG | + | chr1.3:3412648-3412667 | None:intergenic | 35.0% | |
| TTCCTTGTCTGTAAGTACAA+TGG | - | chr1.3:3411599-3411618 | MS.gene043977:intron | 35.0% | |
| TTGGGCTATAAGAAAAGTCA+AGG | + | chr1.3:3412684-3412703 | None:intergenic | 35.0% | |
| ! | CACTAGATATTCGTATTGAC+TGG | + | chr1.3:3412007-3412026 | None:intergenic | 35.0% |
| ! | CACTGCATTTGATTTCATTC+TGG | - | chr1.3:3412710-3412729 | MS.gene043977:CDS | 35.0% |
| ! | TAGACAAGTATCAGTTTGCT+AGG | + | chr1.3:3412772-3412791 | None:intergenic | 35.0% |
| ! | TCTCGAGTGTTGTCAAATAT+CGG | - | chr1.3:3412361-3412380 | MS.gene043977:intron | 35.0% |
| !! | AGACAAGTATCAGTTTGCTA+GGG | + | chr1.3:3412771-3412790 | None:intergenic | 35.0% |
| !! | TCGAGATAAAAGTGCTTAGT+TGG | + | chr1.3:3412347-3412366 | None:intergenic | 35.0% |
| !!! | GTGGTGGATTTTTTAACAAC+CGG | - | chr1.3:3412399-3412418 | MS.gene043977:intron | 35.0% |
| AACTCCACTAGGACCTTTAA+GGG | + | chr1.3:3411480-3411499 | None:intergenic | 40.0% | |
| AAGCTCCGCTGAAAATACAA+TGG | + | chr1.3:3412922-3412941 | None:intergenic | 40.0% | |
| ATAAGGCTGACAACTAGAGA+TGG | - | chr1.3:3411512-3411531 | MS.gene043977:CDS | 40.0% | |
| ATAGGGAGAGAAACACACAT+GGG | + | chr1.3:3412310-3412329 | None:intergenic | 40.0% | |
| ATATCCACCACAAAACACCA+TGG | + | chr1.3:3412453-3412472 | None:intergenic | 40.0% | |
| CACCATTGTACTTACAGACA+AGG | + | chr1.3:3411604-3411623 | None:intergenic | 40.0% | |
| CCAGAAAATGTGACCCTTAA+AGG | - | chr1.3:3411464-3411483 | MS.gene043977:CDS | 40.0% | |
| GATCACCAAAAGCTGCTAAT+TGG | - | chr1.3:3411885-3411904 | MS.gene043977:intron | 40.0% | |
| GTCAATACTGCTTCTAATGC+TGG | - | chr1.3:3411764-3411783 | MS.gene043977:intron | 40.0% | |
| TAACTCCACTAGGACCTTTA+AGG | + | chr1.3:3411481-3411500 | None:intergenic | 40.0% | |
| TCACCAAAAGCTGCTAATTG+GGG | - | chr1.3:3411887-3411906 | MS.gene043977:intron | 40.0% | |
| TCTACCTTCCCACTTCTATT+CGG | + | chr1.3:3412896-3412915 | None:intergenic | 40.0% | |
| TCTCTCAGTCAAGTAATCTC+TGG | - | chr1.3:3412578-3412597 | MS.gene043977:CDS | 40.0% | |
| TGAACTGTTCAATTCCTCAG+AGG | - | chr1.3:3412862-3412881 | MS.gene043977:CDS | 40.0% | |
| TGGCAAGTTAGCTAGAGATA+GGG | + | chr1.3:3412327-3412346 | None:intergenic | 40.0% | |
| TGTGAAGGATGACATAACCA+TGG | - | chr1.3:3412433-3412452 | MS.gene043977:intron | 40.0% | |
| TTCTTCCATGTAACTCCACT+AGG | + | chr1.3:3411491-3411510 | None:intergenic | 40.0% | |
| TTGGCAAGTTAGCTAGAGAT+AGG | + | chr1.3:3412328-3412347 | None:intergenic | 40.0% | |
| ! | AAAGTCAACAGCACTTGTTG+AGG | - | chr1.3:3412949-3412968 | MS.gene043977:CDS | 40.0% |
| ! | ATAACCATGGTGTTTTGTGG+TGG | - | chr1.3:3412446-3412465 | MS.gene043977:intron | 40.0% |
| ! | GACATAACCATGGTGTTTTG+TGG | - | chr1.3:3412443-3412462 | MS.gene043977:intron | 40.0% |
| ! | GACGACCATTGTATTTTCAG+CGG | - | chr1.3:3412914-3412933 | MS.gene043977:CDS | 40.0% |
| !! | CATTTTGGCCTTTCCCTTAA+TGG | - | chr1.3:3412544-3412563 | MS.gene043977:CDS | 40.0% |
| !! | CCTTTAAGGGTCACATTTTC+TGG | + | chr1.3:3411467-3411486 | None:intergenic | 40.0% |
| !!! | ATGGTGTTTTGTGGTGGATA+TGG | - | chr1.3:3412452-3412471 | MS.gene043977:intron | 40.0% |
| AAGGTCCTAGTGGAGTTACA+TGG | - | chr1.3:3411483-3411502 | MS.gene043977:CDS | 45.0% | |
| ACGAGAACCACTGACATTGA+AGG | + | chr1.3:3413032-3413051 | None:intergenic | 45.0% | |
| ACTGAATAGCTGCGGTCTTA+GGG | + | chr1.3:3411823-3411842 | None:intergenic | 45.0% | |
| ACTTGTAACAAGCAACACCC+AGG | - | chr1.3:3411932-3411951 | MS.gene043977:intron | 45.0% | |
| AGATGGCACTGTTTACTTCG+TGG | - | chr1.3:3411529-3411548 | MS.gene043977:CDS | 45.0% | |
| ATCAAATGCAGTGGTGTGCT+TGG | + | chr1.3:3412703-3412722 | None:intergenic | 45.0% | |
| CAATGGTGAATCGCACTTTG+AGG | - | chr1.3:3411616-3411635 | MS.gene043977:intron | 45.0% | |
| CCTTCACAAATAGGTCATGC+CGG | + | chr1.3:3412421-3412440 | None:intergenic | 45.0% | |
| CTACCTTCCCACTTCTATTC+GGG | + | chr1.3:3412895-3412914 | None:intergenic | 45.0% | |
| GATAGGGAGAGAAACACACA+TGG | + | chr1.3:3412311-3412330 | None:intergenic | 45.0% | |
| GGAAAGCCAAAAATCCCCAT+AGG | + | chr1.3:3412483-3412502 | None:intergenic | 45.0% | |
| GTGTTGTCAAATATCGGCCA+TGG | - | chr1.3:3412367-3412386 | MS.gene043977:intron | 45.0% | |
| TCAAATGCAGTGGTGTGCTT+GGG | + | chr1.3:3412702-3412721 | None:intergenic | 45.0% | |
| TGGTGATCTTCTTCTCCTCT+TGG | + | chr1.3:3411873-3411892 | None:intergenic | 45.0% | |
| TTGTCAAATATCGGCCATGG+CGG | - | chr1.3:3412370-3412389 | MS.gene043977:intron | 45.0% | |
| !! | GTAGTATTATCGATGGCGGA+TGG | + | chr1.3:3412517-3412536 | None:intergenic | 45.0% |
| !! | TCTCCTCTTGGTTCTTTTGC+CGG | + | chr1.3:3411861-3411880 | None:intergenic | 45.0% |
| !!! | GGATTTTTGGCTTTCCGTCA+CGG | - | chr1.3:3412487-3412506 | MS.gene043977:intron | 45.0% |
| !!! | GTGTTTTGTGGTGGATATGG+CGG | - | chr1.3:3412455-3412474 | MS.gene043977:intron | 45.0% |
| !!! | TTAATTATTTTAACAAAATA+TGG | + | chr1.3:3413007-3413026 | None:intergenic | 5.0% |
| ATCATCCGTGAACTGCTCAG+GGG | + | chr1.3:3411795-3411814 | None:intergenic | 50.0% | |
| CAACCGGCAAAAGAACCAAG+AGG | - | chr1.3:3411855-3411874 | MS.gene043977:intron | 50.0% | |
| CACTGAATAGCTGCGGTCTT+AGG | + | chr1.3:3411824-3411843 | None:intergenic | 50.0% | |
| CATCATCCGTGAACTGCTCA+GGG | + | chr1.3:3411796-3411815 | None:intergenic | 50.0% | |
| CATGCTCAAACAGCACAAGG+GGG | - | chr1.3:3411704-3411723 | MS.gene043977:intron | 50.0% | |
| CCATGCTCAAACAGCACAAG+GGG | - | chr1.3:3411703-3411722 | MS.gene043977:intron | 50.0% | |
| CCGGCATGACCTATTTGTGA+AGG | - | chr1.3:3412418-3412437 | MS.gene043977:intron | 50.0% | |
| CTGTTTACTTCGTGGACGGT+TGG | - | chr1.3:3411537-3411556 | MS.gene043977:CDS | 50.0% | |
| GAAGGGACACTGAATAGCTG+CGG | + | chr1.3:3411831-3411850 | None:intergenic | 50.0% | |
| GAGAAACACACATGGGAGAG+AGG | + | chr1.3:3412303-3412322 | None:intergenic | 50.0% | |
| GCCATGCTCAAACAGCACAA+GGG | - | chr1.3:3411702-3411721 | MS.gene043977:intron | 50.0% | |
| GGCACTGTTTACTTCGTGGA+CGG | - | chr1.3:3411533-3411552 | MS.gene043977:CDS | 50.0% | |
| GTGACCCTTAAAGGTCCTAG+TGG | - | chr1.3:3411473-3411492 | MS.gene043977:CDS | 50.0% | |
| TGATTCCCCTGAGCAGTTCA+CGG | - | chr1.3:3411787-3411806 | MS.gene043977:intron | 50.0% | |
| ! | GCACCCCAATTAGCAGCTTT+TGG | + | chr1.3:3411893-3411912 | None:intergenic | 50.0% |
| !! | CTCTTGGTTCTTTTGCCGGT+TGG | + | chr1.3:3411857-3411876 | None:intergenic | 50.0% |
| !! | TGGTTCTTTTGCCGGTTGGT+AGG | + | chr1.3:3411853-3411872 | None:intergenic | 50.0% |
| !!! | CTTTTGCCGGTTGGTAGGAA+GGG | + | chr1.3:3411848-3411867 | None:intergenic | 50.0% |
| !!! | TCTTTTGCCGGTTGGTAGGA+AGG | + | chr1.3:3411849-3411868 | None:intergenic | 50.0% |
| CAGCCAGCCCGAATAGAAGT+GGG | - | chr1.3:3412885-3412904 | MS.gene043977:CDS | 55.0% | |
| CAGCCCGAATAGAAGTGGGA+AGG | - | chr1.3:3412889-3412908 | MS.gene043977:CDS | 55.0% | |
| CAGTGTCCCTTCCTACCAAC+CGG | - | chr1.3:3411839-3411858 | MS.gene043977:intron | 55.0% | |
| CTTCCCACTTCTATTCGGGC+TGG | + | chr1.3:3412891-3412910 | None:intergenic | 55.0% | |
| GCATCATCCGTGAACTGCTC+AGG | + | chr1.3:3411797-3411816 | None:intergenic | 55.0% | |
| GGCCATGCTCAAACAGCACA+AGG | - | chr1.3:3411701-3411720 | MS.gene043977:intron | 55.0% | |
| !! | ATATCGGCCATGGCGGATTG+TGG | - | chr1.3:3412377-3412396 | MS.gene043977:intron | 55.0% |
| !! | CCCCTTGTGCTGTTTGAGCA+TGG | + | chr1.3:3411706-3411725 | None:intergenic | 55.0% |
| GCAGCCAGCCCGAATAGAAG+TGG | - | chr1.3:3412884-3412903 | MS.gene043977:CDS | 60.0% | |
| GTGGATATGGCGGCGCCTAT+GGG | - | chr1.3:3412465-3412484 | MS.gene043977:intron | 60.0% | |
| TCCACCACCACAATCCGCCA+TGG | + | chr1.3:3412387-3412406 | None:intergenic | 60.0% | |
| TGGATATGGCGGCGCCTATG+GGG | - | chr1.3:3412466-3412485 | MS.gene043977:intron | 60.0% | |
| ! | GCGGCGCCTATGGGGATTTT+TGG | - | chr1.3:3412474-3412493 | MS.gene043977:intron | 60.0% |
| ! | GGGTGCGAGAGCACATGCTT+GGG | - | chr1.3:3411907-3411926 | MS.gene043977:intron | 60.0% |
| GGTGGATATGGCGGCGCCTA+TGG | - | chr1.3:3412464-3412483 | MS.gene043977:intron | 65.0% | |
| ! | GGGGTGCGAGAGCACATGCT+TGG | - | chr1.3:3411906-3411925 | MS.gene043977:intron | 65.0% |
| ! | TGGCGGATGGCAGACCGTGA+CGG | + | chr1.3:3412504-3412523 | None:intergenic | 65.0% |
| !! | ATTCGGGCTGGCTGCCTCTG+AGG | + | chr1.3:3412879-3412898 | None:intergenic | 65.0% |
| !! | GCCATGGCGGATTGTGGTGG+TGG | - | chr1.3:3412383-3412402 | MS.gene043977:intron | 65.0% |
| !! | TCGGCCATGGCGGATTGTGG+TGG | - | chr1.3:3412380-3412399 | MS.gene043977:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3411422 | 3413057 | 3411422 | ID=MS.gene043977 |
| chr1.3 | mRNA | 3411422 | 3413057 | 3411422 | ID=MS.gene043977.t1;Parent=MS.gene043977 |
| chr1.3 | exon | 3412526 | 3413057 | 3412526 | ID=MS.gene043977.t1.exon1;Parent=MS.gene043977.t1 |
| chr1.3 | CDS | 3412526 | 3413057 | 3412526 | ID=cds.MS.gene043977.t1;Parent=MS.gene043977.t1 |
| chr1.3 | exon | 3411422 | 3411597 | 3411422 | ID=MS.gene043977.t1.exon2;Parent=MS.gene043977.t1 |
| chr1.3 | CDS | 3411422 | 3411597 | 3411422 | ID=cds.MS.gene043977.t1;Parent=MS.gene043977.t1 |
| Gene Sequence |
| Protein sequence |
