AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24348

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24348.t1 MTR_1g021320 94.324 370 19 2 1 368 40 409 0.0 706
MS.gene24348.t1 MTR_1g021320 71.006 169 45 2 120 286 2 168 7.49e-74 245
MS.gene24348.t1 MTR_1g021360 65.896 346 62 2 1 346 40 329 3.32e-158 453
MS.gene24348.t1 MTR_1g021360 71.429 168 46 2 120 286 2 168 2.44e-75 241
MS.gene24348.t1 MTR_1g021290 63.514 370 66 4 1 367 42 345 2.05e-148 423
MS.gene24348.t1 MTR_1g021290 67.857 140 44 1 120 258 3 142 9.70e-60 196
MS.gene24348.t1 MTR_1g021440 61.479 257 73 4 129 368 7 254 1.71e-102 305
MS.gene24348.t1 MTR_1g021440 79.688 128 26 0 1 128 37 164 3.55e-68 217
MS.gene24348.t1 MTR_1g021440 61.479 257 73 4 129 368 7 254 1.64e-100 303
MS.gene24348.t1 MTR_1g021440 79.688 128 26 0 1 128 37 164 1.23e-66 216
MS.gene24348.t1 MTR_1g021440 67.273 220 60 3 129 345 7 217 2.00e-100 299
MS.gene24348.t1 MTR_1g021440 79.688 128 26 0 1 128 37 164 2.56e-68 216
MS.gene24348.t1 MTR_1g021440 67.273 220 60 3 129 345 7 217 1.09e-98 298
MS.gene24348.t1 MTR_1g021440 79.688 128 26 0 1 128 37 164 7.99e-67 216
MS.gene24348.t1 MTR_1g021350 58.301 259 71 4 126 368 3 240 3.96e-93 282
MS.gene24348.t1 MTR_1g021350 72.868 129 17 2 1 129 36 146 2.94e-57 190
MS.gene24348.t1 MTR_1g021330 62.810 242 71 7 129 368 10 234 1.85e-92 282
MS.gene24348.t1 MTR_1g021330 81.395 129 23 1 1 129 41 168 5.62e-68 219
MS.gene24348.t1 MTR_1g021435 57.371 251 62 3 129 368 6 222 1.92e-86 266
MS.gene24348.t1 MTR_1g021435 79.070 129 27 0 1 129 37 165 2.99e-65 211
MS.gene24348.t1 MTR_1g021400 58.848 243 70 6 129 368 14 229 3.13e-81 253
MS.gene24348.t1 MTR_1g021400 75.781 128 25 1 1 128 45 166 4.47e-60 198
MS.gene24348.t1 MTR_1g021410 57.025 242 76 5 129 368 7 222 2.87e-77 242
MS.gene24348.t1 MTR_1g021410 75.969 129 25 1 1 129 37 159 1.06e-59 197
MS.gene24348.t1 MTR_1g021380 51.351 259 58 6 129 368 6 215 1.23e-71 227
MS.gene24348.t1 MTR_1g021380 68.992 129 29 1 1 129 36 153 3.81e-53 179
MS.gene24348.t1 MTR_1g021500 51.504 266 84 9 119 361 5 248 1.78e-71 229
MS.gene24348.t1 MTR_1g021500 54.745 137 37 4 1 130 41 159 1.45e-33 129
MS.gene24348.t1 MTR_1g021500 51.504 266 84 9 119 361 5 248 2.72e-71 231
MS.gene24348.t1 MTR_1g021500 54.745 137 37 4 1 130 41 159 1.69e-33 130
MS.gene24348.t1 MTR_1g021270 40.196 102 59 2 144 244 15 115 8.93e-17 82.0
MS.gene24348.t1 MTR_1g021270 36.036 111 60 3 2 112 31 130 3.76e-13 71.2
MS.gene24348.t1 MTR_7g050710 24.422 303 173 11 2 256 29 323 5.99e-15 75.5
MS.gene24348.t1 MTR_7g050710 33.663 101 65 2 145 244 14 113 5.24e-13 69.7
MS.gene24348.t1 MTR_7g050720 32.468 154 87 3 156 293 23 175 2.15e-14 73.6
MS.gene24348.t1 MTR_7g050580 33.663 101 62 2 134 233 7 103 1.75e-13 70.9
MS.gene24348.t1 MTR_7g050580 37.838 74 46 0 2 75 29 102 6.19e-11 63.2
MS.gene24348.t1 MTR_7g050640 31.959 97 64 1 139 233 7 103 9.89e-13 64.7
MS.gene24348.t1 MTR_7g050640 37.838 74 46 0 2 75 29 102 2.77e-12 63.5
MS.gene24348.t1 MTR_1g034240 39.080 87 52 1 148 233 11 97 1.66e-12 68.6
MS.gene24348.t1 MTR_3g098790 29.282 181 97 5 138 299 11 179 2.18e-12 67.8
MS.gene24348.t1 MTR_3g098790 37.333 75 47 0 1 75 28 102 4.44e-11 63.9
MS.gene24348.t1 MTR_7g050590 35.443 79 51 0 159 237 2 80 7.32e-12 65.9
MS.gene24348.t1 MTR_1g034210 41.026 78 46 0 155 232 19 96 1.49e-11 65.1
MS.gene24348.t1 MTR_1g034210 41.026 78 46 0 155 232 19 96 2.08e-11 65.1
MS.gene24348.t1 MTR_5g044670 40.000 80 48 0 154 233 27 106 2.34e-11 64.7
MS.gene24348.t1 MTR_5g044670 25.000 256 154 6 2 219 32 287 4.02e-11 63.9
MS.gene24348.t1 MTR_5g070440 33.333 117 65 3 122 236 9 114 4.79e-11 63.2
MS.gene24348.t1 MTR_4g068320 37.209 86 53 1 148 232 10 95 5.06e-11 64.3
MS.gene24348.t1 MTR_3g005495 30.935 139 90 4 144 280 242 376 9.35e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24348.t1 AT4G33280 48.299 147 74 2 131 275 11 157 1.26e-42 151
MS.gene24348.t1 AT4G33280 33.451 284 140 6 1 235 38 321 1.04e-33 128
MS.gene24348.t1 AT4G33280 52.344 128 60 1 131 257 11 138 1.86e-42 150
MS.gene24348.t1 AT4G33280 56.436 101 43 1 1 100 38 138 5.63e-31 119
MS.gene24348.t1 AT4G33280 52.344 128 60 1 131 257 11 138 1.27e-41 150
MS.gene24348.t1 AT4G33280 56.436 101 43 1 1 100 38 138 3.87e-30 119
MS.gene24348.t1 AT4G34400 41.667 84 49 0 157 240 29 112 6.79e-18 84.7
MS.gene24348.t1 AT4G34400 40.000 85 51 0 1 85 30 114 1.70e-17 83.6
MS.gene24348.t1 AT4G34400 41.667 84 49 0 157 240 29 112 6.79e-18 84.7
MS.gene24348.t1 AT4G34400 40.000 85 51 0 1 85 30 114 1.70e-17 83.6
MS.gene24348.t1 AT3G06220 32.292 96 64 1 145 240 11 105 4.02e-15 73.2
MS.gene24348.t1 AT3G06220 30.000 110 69 2 2 111 25 126 1.44e-14 71.6
MS.gene24348.t1 AT5G66980 39.216 102 57 2 145 242 11 111 8.60e-13 68.9
MS.gene24348.t1 AT5G66980 26.766 269 135 10 1 211 24 288 1.60e-12 68.2
MS.gene24348.t1 AT5G60130 38.614 101 57 2 145 240 15 115 1.03e-12 67.8
MS.gene24348.t1 AT5G60130 40.909 88 47 2 1 83 28 115 2.58e-12 66.6
MS.gene24348.t1 AT3G06160 32.955 88 59 0 145 232 26 113 1.19e-12 68.6
MS.gene24348.t1 AT3G06160 37.333 75 47 0 1 75 39 113 5.34e-12 66.6
MS.gene24348.t1 AT3G06160 32.955 88 59 0 145 232 11 98 1.49e-12 68.2
MS.gene24348.t1 AT3G06160 30.252 119 83 0 1 119 24 142 4.52e-12 66.6
MS.gene24348.t1 AT3G06160 32.955 88 59 0 145 232 11 98 1.49e-12 68.2
MS.gene24348.t1 AT3G06160 30.252 119 83 0 1 119 24 142 4.52e-12 66.6
MS.gene24348.t1 AT3G06160 32.955 88 59 0 145 232 11 98 1.49e-12 68.2
MS.gene24348.t1 AT3G06160 30.252 119 83 0 1 119 24 142 4.52e-12 66.6
MS.gene24348.t1 AT3G06160 32.955 88 59 0 145 232 70 157 1.94e-12 68.2
MS.gene24348.t1 AT3G06160 37.975 79 48 1 1 78 83 161 7.98e-12 66.2
MS.gene24348.t1 AT3G46770 23.661 224 158 7 12 226 48 267 2.51e-12 67.0
MS.gene24348.t1 AT5G60130 38.614 101 57 2 145 240 15 115 2.58e-12 67.4
MS.gene24348.t1 AT5G60130 25.197 254 153 6 1 219 28 279 4.42e-12 66.6
MS.gene24348.t1 AT5G60130 38.614 101 57 2 145 240 12 112 3.28e-12 67.4
MS.gene24348.t1 AT5G60130 40.909 88 47 2 1 83 25 112 7.11e-12 66.2
MS.gene24348.t1 AT5G60130 38.614 101 57 2 145 240 15 115 3.41e-12 67.4
MS.gene24348.t1 AT5G60130 40.909 88 47 2 1 83 28 115 7.46e-12 66.2
MS.gene24348.t1 AT5G60130 40.909 88 47 2 1 83 2 89 5.62e-12 66.2
MS.gene24348.t1 AT5G60130 40.449 89 48 2 157 240 1 89 3.06e-11 63.9
MS.gene24348.t1 AT3G18990 36.250 80 51 0 154 233 17 96 9.98e-12 65.9
MS.gene24348.t1 AT3G18990 40.000 75 45 0 2 76 22 96 2.08e-11 65.1
MS.gene24348.t1 AT3G18990 36.250 80 51 0 154 233 17 96 1.11e-11 65.9
MS.gene24348.t1 AT3G18990 40.000 75 45 0 2 76 22 96 2.00e-11 65.1
MS.gene24348.t1 AT3G53310 33.333 96 56 1 146 233 5 100 3.89e-11 63.5
MS.gene24348.t1 AT1G49475 33.621 116 75 2 118 233 10 123 4.10e-11 62.0

Find 70 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACACCACCGGGACCTTTA+AGG 0.159160 1.1:+2933749 None:intergenic
GACTTCTTCAACAGAATTAT+TGG 0.172022 1.1:+2934875 None:intergenic
CAACTCCACTAGGACCTTTA+AGG 0.178570 1.1:+2935138 None:intergenic
TAAATTGTCTGAAAATGTTT+TGG 0.223184 1.1:+2935187 None:intergenic
CCAGAAAATGTGACCCTTAA+AGG 0.236805 1.1:-2933763 MS.gene24348:CDS
GGTGGTGTTGCATGGAAAAT+AGG 0.237795 1.1:-2933736 MS.gene24348:CDS
CCAGACAATGTGACCCTTAA+AGG 0.245088 1.1:-2935152 MS.gene24348:CDS
AAGTTGTTGCTTAAAATCTT+TGG 0.248017 1.1:+2934746 None:intergenic
TGAAATGGATGAACTGAAAA+TGG 0.274129 1.1:+2934781 None:intergenic
TGGTTTATATGAGAAATTTC+AGG 0.307206 1.1:-2933434 MS.gene24348:CDS
CCTACCAACCAACCGGAAAA+AGG 0.307983 1.1:-2933273 MS.gene24348:CDS
TTTCAGGATCTTAACAATAT+AGG 0.337128 1.1:-2933418 MS.gene24348:CDS
CATGGGAGGAAGACATTTAC+TGG 0.353390 1.1:-2934806 MS.gene24348:CDS
CCCCTAGTTCAGTTTGAGTA+TGG 0.362232 1.1:+2933527 None:intergenic
CCTTTAAGGGTCACATTGTC+TGG 0.362859 1.1:+2935152 None:intergenic
AGTTGTTGCTTAAAATCTTT+GGG 0.367729 1.1:+2934747 None:intergenic
CGACATCAGCTAATTGTTGT+TGG 0.381642 1.1:-2933234 MS.gene24348:CDS
CATTCAACACCGCCATTAGA+AGG 0.385293 1.1:+2934846 None:intergenic
TCCTTGTCTTTAAGTACAAT+GGG 0.391820 1.1:-2935019 MS.gene24348:CDS
TGGGAAGAAGTTGGGTGAAA+TGG 0.393018 1.1:+2934766 None:intergenic
TAAAATCTTTGGGAAGAAGT+TGG 0.393785 1.1:+2934757 None:intergenic
CCATCCATTTGTGAAGTAAA+CGG 0.401782 1.1:+2935082 None:intergenic
AAAATCTTTGGGAAGAAGTT+GGG 0.404051 1.1:+2934758 None:intergenic
GTGGTGTTGCATGGAAAATA+GGG 0.415820 1.1:-2933735 MS.gene24348:CDS
AACACCACCGGGACCTTTAA+GGG 0.419570 1.1:+2933750 None:intergenic
GTATCAGCTATGAACTGCTC+AGG 0.438283 1.1:+2933325 None:intergenic
TTCCTTGTCTTTAAGTACAA+TGG 0.443680 1.1:-2935020 MS.gene24348:CDS
GTTGTTGGAGAGCACTTGAC+TGG 0.446323 1.1:-2933219 MS.gene24348:CDS
CCAACCGTCCACGAAGTAAA+CGG 0.457669 1.1:+2933693 None:intergenic
GATACCGTTTACTTCACAAA+TGG 0.460223 1.1:-2935086 MS.gene24348:CDS
GAAGTCAATACTGCTTCTAA+TGG 0.478633 1.1:-2933469 MS.gene24348:CDS
AACTCCACTAGGACCTTTAA+GGG 0.479312 1.1:+2935139 None:intergenic
GTTTCAACAGGTACAGCTAA+TGG 0.493162 1.1:+2933391 None:intergenic
TTCCTTGTCTTTAATTACAA+TGG 0.493431 1.1:-2933631 MS.gene24348:CDS
CCGTTTACTTCGTGGACGGT+TGG 0.508441 1.1:-2933693 MS.gene24348:CDS
GAAGTCAGTACTCCTTCTAA+TGG 0.509411 1.1:-2934858 MS.gene24348:CDS
GTGGAGTTGTGTGGAATGTC+GGG 0.511439 1.1:-2935124 MS.gene24348:CDS
GCCATACTCAAACTGAACTA+GGG 0.513331 1.1:-2933528 MS.gene24348:CDS
GGCCATACTCAAACTGAACT+AGG 0.514000 1.1:-2933529 MS.gene24348:CDS
AGACGATACCGTTTACTTCG+TGG 0.517967 1.1:-2933701 MS.gene24348:CDS
CAGTTTCCCTACCAACCAAC+CGG 0.519266 1.1:-2933280 MS.gene24348:CDS
CCCCATTGTACTTAAAGACA+AGG 0.522025 1.1:+2935018 None:intergenic
AGTGGAGTTGTGTGGAATGT+CGG 0.523559 1.1:-2935125 MS.gene24348:CDS
TGGAGATAGTTTCTGTGAGA+AGG 0.531697 1.1:-2934967 MS.gene24348:CDS
CACCATTGTAATTAAAGACA+AGG 0.542064 1.1:+2933629 None:intergenic
TATCAGCTATGAACTGCTCA+GGG 0.548226 1.1:+2933326 None:intergenic
AAGGTCCCGGTGGTGTTGCA+TGG 0.549921 1.1:-2933744 MS.gene24348:CDS
TCTAATGGTGGTGTTGAATG+TGG 0.555737 1.1:-2933454 MS.gene24348:CDS
CCGTTTACTTCACAAATGGA+TGG 0.562163 1.1:-2935082 MS.gene24348:CDS
GAAATGGATGAACTGAAAAT+GGG 0.570637 1.1:+2934782 None:intergenic
AATGTGACCCTTAAAGGTCC+CGG 0.577654 1.1:-2933757 MS.gene24348:CDS
TACTGAACAAGGGTGTAACA+AGG 0.579623 1.1:-2934907 MS.gene24348:CDS
GGACAAGCTCATACTGAACA+AGG 0.580719 1.1:-2934918 MS.gene24348:CDS
TTGGAGAGCACTTGACTGGG+TGG 0.581287 1.1:-2933215 MS.gene24348:CDS
ACATTCCACACAACTCCACT+AGG 0.582408 1.1:+2935128 None:intergenic
TTGTTGGAGAGCACTTGACT+GGG 0.586591 1.1:-2933218 MS.gene24348:CDS
GTCAATACTGCTTCTAATGG+TGG 0.593959 1.1:-2933466 MS.gene24348:CDS
GCTTATAACAAGCAACACTC+AGG 0.608918 1.1:-2933193 None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG 0.624686 1.1:-2935133 MS.gene24348:CDS
GTGACCCTTAAAGGTCCTAG+TGG 0.630968 1.1:-2935143 MS.gene24348:CDS
CCATACTCAAACTGAACTAG+GGG 0.634393 1.1:-2933527 MS.gene24348:CDS
GTCAGTACTCCTTCTAATGG+CGG 0.637844 1.1:-2934855 MS.gene24348:CDS
GTAGGGAAACTGTATAGCTG+TGG 0.649466 1.1:+2933291 None:intergenic
ACTGAACAAGGGTGTAACAA+GGG 0.652043 1.1:-2934906 MS.gene24348:CDS
CCTTGTCTTTAAGTACAATG+GGG 0.669263 1.1:-2935018 MS.gene24348:CDS
GATACCGTTTACTTCGTGGA+CGG 0.682240 1.1:-2933697 MS.gene24348:CDS
GACAAGCTCATACTGAACAA+GGG 0.699080 1.1:-2934917 MS.gene24348:CDS
GTGACCCTTAAAGGTCCCGG+TGG 0.715661 1.1:-2933754 MS.gene24348:CDS
ATCAGCTATGAACTGCTCAG+GGG 0.739451 1.1:+2933327 None:intergenic
CATACTCAAACTGAACTAGG+GGG 0.777970 1.1:-2933526 MS.gene24348:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAATAGAAAAAAGA+AGG + chr1.1:2933787-2933806 None:intergenic 10.0%
!! ATAAAAAAAAATTAAAAGGT+GGG + chr1.1:2933821-2933840 None:intergenic 10.0%
!! TGTATAAAATATAATAATCA+TGG + chr1.1:2934150-2934169 None:intergenic 10.0%
!! GATAAAAAAAAATTAAAAGG+TGG + chr1.1:2933822-2933841 None:intergenic 15.0%
!!! ATATGCTTGTTTTTAAATAA+TGG - chr1.1:2934175-2934194 MS.gene24348:intron 15.0%
!!! TATGCTTGTTTTTAAATAAT+GGG - chr1.1:2934176-2934195 MS.gene24348:intron 15.0%
!! AGTTAAAGGAATTGTAAAAA+GGG + chr1.1:2933842-2933861 None:intergenic 20.0%
!! TATTATTTAATACTCTGCTA+AGG - chr1.1:2934111-2934130 MS.gene24348:intron 20.0%
!! TCAATTATTTACAACATGAA+AGG + chr1.1:2933703-2933722 None:intergenic 20.0%
!! TTTACAATTCCTTTAACTAA+GGG - chr1.1:2933844-2933863 MS.gene24348:intron 20.0%
!!! AAATTGTCTGAAAATGTTTT+AGG + chr1.1:2933203-2933222 None:intergenic 20.0%
!!! AAATTGTCTGAAAATGTTTT+GGG + chr1.1:2933203-2933222 None:intergenic 20.0%
!!! AACCTTTCTAAATTGTTATT+TGG - chr1.1:2933737-2933756 MS.gene24348:CDS 20.0%
!!! ACCTTTCTAAATTGTTATTT+GGG - chr1.1:2933738-2933757 MS.gene24348:CDS 20.0%
!!! AGTAATTATGTTTAGCTTTT+AGG - chr1.1:2934473-2934492 MS.gene24348:intron 20.0%
!!! GAAATTTATACTTTTATTGC+AGG - chr1.1:2934561-2934580 MS.gene24348:intron 20.0%
!!! TAAATTGTCTGAAAATGTTT+TGG + chr1.1:2933204-2933223 None:intergenic 20.0%
!!! TTTGAAGTTTTAATCTTTCA+TGG - chr1.1:2933401-2933420 MS.gene24348:CDS 20.0%
!!! TTTTACAATTCCTTTAACTA+AGG - chr1.1:2933843-2933862 MS.gene24348:intron 20.0%
! ACCCAAATAACAATTTAGAA+AGG + chr1.1:2933742-2933761 None:intergenic 25.0%
! CAGTTAAAGGAATTGTAAAA+AGG + chr1.1:2934042-2934061 None:intergenic 25.0%
! CATGATATCAAGATGATTAA+TGG - chr1.1:2934436-2934455 MS.gene24348:intron 25.0%
! TGGTTTATATGAGAAATTTC+AGG - chr1.1:2934954-2934973 MS.gene24348:CDS 25.0%
! TTACAATTCCTTTAACTAAG+GGG - chr1.1:2933845-2933864 MS.gene24348:intron 25.0%
! TTCCTTGTCTTTAATTACAA+TGG - chr1.1:2934757-2934776 MS.gene24348:CDS 25.0%
! TTTCAGGATCTTAACAATAT+AGG - chr1.1:2934970-2934989 MS.gene24348:CDS 25.0%
!! AAGTTGTTGCTTAAAATCTT+TGG + chr1.1:2933645-2933664 None:intergenic 25.0%
!! AATGAAAAGACTTTTAATGC+TGG - chr1.1:2935024-2935043 MS.gene24348:CDS 25.0%
!! AGCATTAAAAGTCTTTTCAT+TGG + chr1.1:2935025-2935044 None:intergenic 25.0%
!! AGTTGTTGCTTAAAATCTTT+GGG + chr1.1:2933644-2933663 None:intergenic 25.0%
!! TTTTTATCCTTTCCGAATAA+TGG - chr1.1:2934231-2934250 MS.gene24348:intron 25.0%
!!! AAAGAAGCTTCTTATTTTGT+CGG - chr1.1:2934829-2934848 MS.gene24348:CDS 25.0%
!!! GATTTTAGTGTAGTTTTTCT+TGG - chr1.1:2934370-2934389 MS.gene24348:intron 25.0%
!!! TCTTATTTTGTTGGAAAATG+TGG - chr1.1:2933449-2933468 MS.gene24348:CDS 25.0%
!!! TTTGATGTTTTGATCTTTGA+TGG - chr1.1:2934790-2934809 MS.gene24348:CDS 25.0%
AAAGAACTAAGTGCAGTTAA+AGG + chr1.1:2934055-2934074 None:intergenic 30.0%
AGCCTCTTGTGTAAAAAATA+GGG - chr1.1:2933935-2933954 MS.gene24348:intron 30.0%
CACCATTGTAATTAAAGACA+AGG + chr1.1:2934762-2934781 None:intergenic 30.0%
GAAATGGATGAACTGAAAAT+GGG + chr1.1:2933609-2933628 None:intergenic 30.0%
GACTTCTTCAACAGAATTAT+TGG + chr1.1:2933516-2933535 None:intergenic 30.0%
TACAATTCCTTTAACTAAGG+GGG - chr1.1:2933846-2933865 MS.gene24348:intron 30.0%
TCCTTGTCTTTAAGTACAAT+GGG - chr1.1:2933369-2933388 MS.gene24348:CDS 30.0%
TGAAATGGATGAACTGAAAA+TGG + chr1.1:2933610-2933629 None:intergenic 30.0%
TTCCTTGTCTTTAAGTACAA+TGG - chr1.1:2933368-2933387 MS.gene24348:CDS 30.0%
TTGAATTTGCATTGCAATAG+AGG - chr1.1:2934274-2934293 MS.gene24348:intron 30.0%
! AAAATCTTTGGGAAGAAGTT+GGG + chr1.1:2933633-2933652 None:intergenic 30.0%
! ATAGATAATTTTGCAGAGCA+AGG + chr1.1:2934410-2934429 None:intergenic 30.0%
! TAAAATCTTTGGGAAGAAGT+TGG + chr1.1:2933634-2933653 None:intergenic 30.0%
!! TTTTCATTGGTAGTTTCAAC+AGG + chr1.1:2935012-2935031 None:intergenic 30.0%
!!! TACCCTATTTTTTACACAAG+AGG + chr1.1:2933940-2933959 None:intergenic 30.0%
!!! TCTTATTTTGTCGGAAAATG+CGG - chr1.1:2934838-2934857 MS.gene24348:CDS 30.0%
AGTGCTTAAATGTAGATGCA+TGG + chr1.1:2934302-2934321 None:intergenic 35.0%
CAGCCTCTTGTGTAAAAAAT+AGG - chr1.1:2933934-2933953 MS.gene24348:intron 35.0%
CCATCCATTTGTGAAGTAAA+CGG + chr1.1:2933309-2933328 None:intergenic 35.0%
CCTTGTCTTTAAGTACAATG+GGG - chr1.1:2933370-2933389 MS.gene24348:CDS 35.0%
GAAGAATCTAAGAGTGATGT+TGG + chr1.1:2934515-2934534 None:intergenic 35.0%
GAAGTCAATACTGCTTCTAA+TGG - chr1.1:2934919-2934938 MS.gene24348:CDS 35.0%
GATACCGTTTACTTCACAAA+TGG - chr1.1:2933302-2933321 MS.gene24348:CDS 35.0%
GTACAAAACACCAAAATGGT+GGG - chr1.1:2933967-2933986 MS.gene24348:intron 35.0%
TACAACATGAAAGGAAAGAG+TGG + chr1.1:2933694-2933713 None:intergenic 35.0%
! AATAATGGGAACTGTGACAT+TGG - chr1.1:2934190-2934209 MS.gene24348:intron 35.0%
!! GTGGCTTTAAGGAAAAGAAA+AGG - chr1.1:2934334-2934353 MS.gene24348:intron 35.0%
!! TTCATGCTTTTGTGGCTTTA+AGG - chr1.1:2934323-2934342 MS.gene24348:intron 35.0%
!!! AAGGCAGCTTCTTATTTTGT+TGG - chr1.1:2933440-2933459 MS.gene24348:CDS 35.0%
!!! GTCTGAAAATGTTTTGGGAA+GGG + chr1.1:2933198-2933217 None:intergenic 35.0%
!!! TGTCTGAAAATGTTTTGGGA+AGG + chr1.1:2933199-2933218 None:intergenic 35.0%
AACTCCACTAGGACCTTTAA+GGG + chr1.1:2933252-2933271 None:intergenic 40.0%
AGCGTATCCATTATTCGGAA+AGG + chr1.1:2934241-2934260 None:intergenic 40.0%
CAGTTCGCCTGAAAAATCAT+GGG - chr1.1:2933565-2933584 MS.gene24348:CDS 40.0%
CATACTCAAACTGAACTAGG+GGG - chr1.1:2934862-2934881 MS.gene24348:CDS 40.0%
CCAGAAAATGTGACCCTTAA+AGG - chr1.1:2934625-2934644 MS.gene24348:intron 40.0%
CCATACTCAAACTGAACTAG+GGG - chr1.1:2934861-2934880 MS.gene24348:CDS 40.0%
CCCCATTGTACTTAAAGACA+AGG + chr1.1:2933373-2933392 None:intergenic 40.0%
CCGTTTACTTCACAAATGGA+TGG - chr1.1:2933306-2933325 MS.gene24348:CDS 40.0%
CGACATCAGCTAATTGTTGT+TGG - chr1.1:2935154-2935173 MS.gene24348:CDS 40.0%
CGTACAAAACACCAAAATGG+TGG - chr1.1:2933966-2933985 MS.gene24348:intron 40.0%
CTGCGTACAAAACACCAAAA+TGG - chr1.1:2933963-2933982 MS.gene24348:intron 40.0%
GAAGTCAGTACTCCTTCTAA+TGG - chr1.1:2933530-2933549 MS.gene24348:CDS 40.0%
GACAAGCTCATACTGAACAA+GGG - chr1.1:2933471-2933490 MS.gene24348:CDS 40.0%
GCCATACTCAAACTGAACTA+GGG - chr1.1:2934860-2934879 MS.gene24348:CDS 40.0%
GCTTATAACAAGCAACACTC+AGG - chr1.1:2935195-2935214 MS.gene24348:CDS 40.0%
GTCAATACTGCTTCTAATGG+TGG - chr1.1:2934922-2934941 MS.gene24348:CDS 40.0%
GTCTCAGCGTATCCATTATT+CGG + chr1.1:2934246-2934265 None:intergenic 40.0%
GTTTCAACAGGTACAGCTAA+TGG + chr1.1:2935000-2935019 None:intergenic 40.0%
TATCAGCTATGAACTGCTCA+GGG + chr1.1:2935065-2935084 None:intergenic 40.0%
TGGAGATAGTTTCTGTGAGA+AGG - chr1.1:2933421-2933440 MS.gene24348:CDS 40.0%
! ACTGAACAAGGGTGTAACAA+GGG - chr1.1:2933482-2933501 MS.gene24348:CDS 40.0%
! TACTGAACAAGGGTGTAACA+AGG - chr1.1:2933481-2933500 MS.gene24348:CDS 40.0%
! TATTTTCCATGCAACACCAC+CGG + chr1.1:2934653-2934672 None:intergenic 40.0%
! TCTAATGGTGGTGTTGAATG+TGG - chr1.1:2934934-2934953 MS.gene24348:CDS 40.0%
! TCTTCCTCCCATGATTTTTC+AGG + chr1.1:2933575-2933594 None:intergenic 40.0%
! TCTTCTCTTGCTCCTTTTTC+CGG + chr1.1:2935130-2935149 None:intergenic 40.0%
!! AAGCACTGTTCATGCTTTTG+TGG - chr1.1:2934315-2934334 MS.gene24348:intron 40.0%
!! CCTTTAAGGGTCACATTTTC+TGG + chr1.1:2934628-2934647 None:intergenic 40.0%
!! GTGGTGTTGCATGGAAAATA+GGG - chr1.1:2934653-2934672 MS.gene24348:intron 40.0%
!! GTTGTTTTCACGTGACTGAA+AGG - chr1.1:2933889-2933908 MS.gene24348:intron 40.0%
AAGGTCATAGGTTCAAGTCG+TGG - chr1.1:2933908-2933927 MS.gene24348:intron 45.0%
AATGTGACCCTTAAAGGTCC+CGG - chr1.1:2933242-2933261 MS.gene24348:CDS 45.0%
ACATTCCACACAACTCCACT+AGG + chr1.1:2933263-2933282 None:intergenic 45.0%
ACTAAAGGTCCTGCATATGC+AGG + chr1.1:2934007-2934026 None:intergenic 45.0%
AGACGATACCGTTTACTTCG+TGG - chr1.1:2934687-2934706 MS.gene24348:intron 45.0%
AGGAAAGAGTGGTGTGAAAG+AGG + chr1.1:2933683-2933702 None:intergenic 45.0%
AGGTCATAGGTTCAAGTCGT+GGG - chr1.1:2933909-2933928 MS.gene24348:intron 45.0%
AGTGGAGTTGTGTGGAATGT+CGG - chr1.1:2933263-2933282 MS.gene24348:CDS 45.0%
ATCAGCTATGAACTGCTCAG+GGG + chr1.1:2935064-2935083 None:intergenic 45.0%
ATGCAGGACCTTTAGTGATC+CGG - chr1.1:2934011-2934030 MS.gene24348:intron 45.0%
CAACTCCACTAGGACCTTTA+AGG + chr1.1:2933253-2933272 None:intergenic 45.0%
CATGGGAGGAAGACATTTAC+TGG - chr1.1:2933582-2933601 MS.gene24348:CDS 45.0%
CATTCAACACCGCCATTAGA+AGG + chr1.1:2933545-2933564 None:intergenic 45.0%
CCAGACAATGTGACCCTTAA+AGG - chr1.1:2933236-2933255 MS.gene24348:CDS 45.0%
CCCCTAGTTCAGTTTGAGTA+TGG + chr1.1:2934864-2934883 None:intergenic 45.0%
CTAAAGGTCCTGCATATGCA+GGG + chr1.1:2934006-2934025 None:intergenic 45.0%
GAATTGTAAAAAGGGCAGCC+CGG + chr1.1:2934033-2934052 None:intergenic 45.0%
GAGTGGTGTGAAAGAGGAAA+AGG + chr1.1:2933677-2933696 None:intergenic 45.0%
GATACCGTTTACTTCGTGGA+CGG - chr1.1:2934691-2934710 MS.gene24348:intron 45.0%
GCAGTTCGCCTGAAAAATCA+TGG - chr1.1:2933564-2933583 MS.gene24348:CDS 45.0%
GGACAAGCTCATACTGAACA+AGG - chr1.1:2933470-2933489 MS.gene24348:CDS 45.0%
GGCCATACTCAAACTGAACT+AGG - chr1.1:2934859-2934878 MS.gene24348:CDS 45.0%
GTAGGGAAACTGTATAGCTG+TGG + chr1.1:2935100-2935119 None:intergenic 45.0%
GTATCAGCTATGAACTGCTC+AGG + chr1.1:2935066-2935085 None:intergenic 45.0%
GTCAGTACTCCTTCTAATGG+CGG - chr1.1:2933533-2933552 MS.gene24348:CDS 45.0%
TCACGTGACTGAAAGGTCAT+AGG - chr1.1:2933896-2933915 MS.gene24348:intron 45.0%
TGGGAAGAAGTTGGGTGAAA+TGG + chr1.1:2933625-2933644 None:intergenic 45.0%
TTCGCCTGAAAAATCATGGG+AGG - chr1.1:2933568-2933587 MS.gene24348:CDS 45.0%
! ATTTTCCATGCAACACCACC+GGG + chr1.1:2934652-2934671 None:intergenic 45.0%
! CCTTTAAGGGTCACATTGTC+TGG + chr1.1:2933239-2933258 None:intergenic 45.0%
!! CTTTTTCCGGTTGGTTGGTA+GGG + chr1.1:2935117-2935136 None:intergenic 45.0%
!! GGTGGTGTTGCATGGAAAAT+AGG - chr1.1:2934652-2934671 MS.gene24348:intron 45.0%
!! TTGTTGGAGAGCACTTGACT+GGG - chr1.1:2935170-2935189 MS.gene24348:CDS 45.0%
!! AAAGATAAAAAAAAATTAAA+AGG + chr1.1:2933825-2933844 None:intergenic 5.0%
AACACCACCGGGACCTTTAA+GGG + chr1.1:2934641-2934660 None:intergenic 50.0%
AAGGTCCTAGTGGAGTTGTG+TGG - chr1.1:2933255-2933274 MS.gene24348:CDS 50.0%
ACAACTTTACCGTTGCGCCA+AGG + chr1.1:2933874-2933893 None:intergenic 50.0%
ACTAGGGGGTAGCAAAGCAA+AGG - chr1.1:2934876-2934895 MS.gene24348:CDS 50.0%
CAAGGCTCCCCCTTAGTTAA+AGG + chr1.1:2933856-2933875 None:intergenic 50.0%
CAGTTTCCCTACCAACCAAC+CGG - chr1.1:2935108-2935127 MS.gene24348:CDS 50.0%
CCAACCGTCCACGAAGTAAA+CGG + chr1.1:2934698-2934717 None:intergenic 50.0%
CCTACCAACCAACCGGAAAA+AGG - chr1.1:2935115-2935134 MS.gene24348:CDS 50.0%
CTTTAACTAAGGGGGAGCCT+TGG - chr1.1:2933854-2933873 MS.gene24348:intron 50.0%
GTGACCCTTAAAGGTCCTAG+TGG - chr1.1:2933245-2933264 MS.gene24348:CDS 50.0%
GTGGAGTTGTGTGGAATGTC+GGG - chr1.1:2933264-2933283 MS.gene24348:CDS 50.0%
TGCAGGACCTTTAGTGATCC+GGG - chr1.1:2934012-2934031 MS.gene24348:intron 50.0%
! CTCTTGCTCCTTTTTCCGGT+TGG + chr1.1:2935126-2935145 None:intergenic 50.0%
! TGCTCCTTTTTCCGGTTGGT+TGG + chr1.1:2935122-2935141 None:intergenic 50.0%
!! CCTTTTTCCGGTTGGTTGGT+AGG + chr1.1:2935118-2935137 None:intergenic 50.0%
!! GTTGTTGGAGAGCACTTGAC+TGG - chr1.1:2935169-2935188 MS.gene24348:CDS 50.0%
CAACACCACCGGGACCTTTA+AGG + chr1.1:2934642-2934661 None:intergenic 55.0%
CATATGCAGGGTCTGGGAAG+GGG + chr1.1:2933994-2934013 None:intergenic 55.0%
CCGTTTACTTCGTGGACGGT+TGG - chr1.1:2934695-2934714 MS.gene24348:intron 55.0%
GCATATGCAGGGTCTGGGAA+GGG + chr1.1:2933995-2934014 None:intergenic 55.0%
GTCCTGCATATGCAGGGTCT+GGG + chr1.1:2934000-2934019 None:intergenic 55.0%
TGCATATGCAGGGTCTGGGA+AGG + chr1.1:2933996-2934015 None:intergenic 55.0%
TTCCCAGACCCTGCATATGC+AGG - chr1.1:2933995-2934014 MS.gene24348:intron 55.0%
!! TTGGAGAGCACTTGACTGGG+TGG - chr1.1:2935173-2935192 MS.gene24348:CDS 55.0%
AGGGCAGCCCGGATCACTAA+AGG + chr1.1:2934022-2934041 None:intergenic 60.0%
GGTCCTGCATATGCAGGGTC+TGG + chr1.1:2934001-2934020 None:intergenic 60.0%
GTGACCCTTAAAGGTCCCGG+TGG - chr1.1:2934634-2934653 MS.gene24348:intron 60.0%
! GGGAAGGGGTCCCACCATTT+TGG + chr1.1:2933980-2933999 None:intergenic 60.0%
!! AAGGTCCCGGTGGTGTTGCA+TGG - chr1.1:2934644-2934663 MS.gene24348:intron 60.0%
AAGGGGGAGCCTTGGCGCAA+CGG - chr1.1:2933862-2933881 MS.gene24348:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 2933194 2935216 2933194 ID=MS.gene24348
chr1.1 mRNA 2933194 2935216 2933194 ID=MS.gene24348.t1;Parent=MS.gene24348
chr1.1 exon 2934746 2935216 2934746 ID=MS.gene24348.t1.exon1;Parent=MS.gene24348.t1
chr1.1 CDS 2934746 2935216 2934746 ID=cds.MS.gene24348.t1;Parent=MS.gene24348.t1
chr1.1 exon 2933194 2933827 2933194 ID=MS.gene24348.t1.exon2;Parent=MS.gene24348.t1
chr1.1 CDS 2933194 2933827 2933194 ID=cds.MS.gene24348.t1;Parent=MS.gene24348.t1
Gene Sequence

>MS.gene24348

GCCCTTCCCAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCAGACAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATGTCGGGCTGACAGCTAGAGATGATACCGTTTACTTCACAAATGGATGGCAAAGATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGGGAATCACTCTTTGAAGTTTTAATCTTTCATGGAGATAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGTGGACAAGCTCATACTGAACAAGGGTGTAACAAGGGAAAAAGCTCCAATAATTCTGTTGAAGAAGTCAGTACTCCTTCTAATGGCGGTGTTGAATGCAGTTCGCCTGAAAAATCATGGGAGGAAGACATTTACTGGACCCATTTTCAGTTCATCCATTTCACCCAACTTCTTCCCAAAGATTTTAAGCAACAACTTGTTAGTACTCCTTTTCCTCTTTCACACCACTCTTTCCTTTCATGTTGTAAATAATTGAAAAAATAAAAATGAAACCTTTCTAAATTGTTATTTGGGTGTTGAGTGCATGCTTTTTTTCACCTTCTTTTTTCTATTTATATTTTTTTTACTATGCCCACCTTTTAATTTTTTTTTATCTTTTTACAATTCCTTTAACTAAGGGGGAGCCTTGGCGCAACGGTAAAGTTGTTTTCACGTGACTGAAAGGTCATAGGTTCAAGTCGTGGGAACAGCCTCTTGTGTAAAAAATAGGGTAAAGCTGCGTACAAAACACCAAAATGGTGGGACCCCTTCCCAGACCCTGCATATGCAGGACCTTTAGTGATCCGGGCTGCCCTTTTTACAATTCCTTTAACTGCACTTAGTTCTTTTGAAGAAAGTTTTCAGTTTTTTTTTTATAATTTTTTTATTATTTAATACTCTGCTAAGGTTTTCTTTTTTAACCATGATTATTATATTTTATACATATAGATATGCTTGTTTTTAAATAATGGGAACTGTGACATTGGTTGTAGATTTTTTTATTTTTTTTATCCTTTCCGAATAATGGATACGCTGAGACACTTTGTTTTGAATTTGCATTGCAATAGAGGAACCATGCATCTACATTTAAGCACTGTTCATGCTTTTGTGGCTTTAAGGAAAAGAAAAGGAAGTGAATGAAGAGATTTTAGTGTAGTTTTTCTTGGTTTATTATTCTTTTCCTTGCTCTGCAAAATTATCTATGTAAATCATGATATCAAGATGATTAATGGCTGTTTTTCAAGCAAGTAATTATGTTTAGCTTTTAGGTAGATATATTAATCGACCAACATCACTCTTAGATTCTTCAGCTCAAAGTTTTTTAATCTCAAATTGAAATTTATACTTTTATTGCAGGCACTTCCTAAAACATTTTCAGACAATTTAAATAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCCGGTGGTGTTGCATGGAAAATAGGGCTCATAACTAGAGACGATACCGTTTACTTCGTGGACGGTTGGCAACGATTCGTGAACGATCACTCTTTGAAAGATAATGATTTCCTTGTCTTTAATTACAATGGTGAATCACACTTTGATGTTTTGATCTTTGATGGAGAAAGCTTCTGTGAGAAAGAAGCTTCTTATTTTGTCGGAAAATGCGGCCATACTCAAACTGAACTAGGGGGTAGCAAAGCAAAGGAAACAAACAATTCTATTGAAGAAGTCAATACTGCTTCTAATGGTGGTGTTGAATGTGGTTTATATGAGAAATTTCAGGATCTTAACAATATAGGAACACCATTAGCTGTACCTGTTGAAACTACCAATGAAAAGACTTTTAATGCTGGTGTCAAATCTGATTCCCCTGAGCAGTTCATAGCTGATACAGTCACTAAGACCACAGCTATACAGTTTCCCTACCAACCAACCGGAAAAAGGAGCAAGAGAAGATCATCGACATCAGCTAATTGTTGTTGGAGAGCACTTGACTGGGTGGCTTATAACAAGCAACACTCAG
Protein sequence

>MS.gene24348.t1

ALPKTFSDNLKKKLPDNVTLKGPSGVVWNVGLTARDDTVYFTNGWQRFVKDHSLKENDFLVFKYNGESLFEVLIFHGDSFCEKAASYFVGKCGQAHTEQGCNKGKSSNNSVEEVSTPSNGGVECSSPEKSWEEDIYWTHFQFIHFTQLLPKDFKQQLALPKTFSDNLNKKLPENVTLKGPGGVAWKIGLITRDDTVYFVDGWQRFVNDHSLKDNDFLVFNYNGESHFDVLIFDGESFCEKEASYFVGKCGHTQTELGGSKAKETNNSIEEVNTASNGGVECGLYEKFQDLNNIGTPLAVPVETTNEKTFNAGVKSDSPEQFIADTVTKTTAIQFPYQPTGKRSKRRSSTSANCCWRALDWVAYNKQHS