Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27370.t1 | XP_024636626.1 | 95.9 | 221 | 9 | 0 | 1 | 221 | 36 | 256 | 3.10E-115 | 424.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27370.t1 | Q8RYD1 | 56.6 | 99 | 40 | 2 | 2 | 99 | 39 | 135 | 1.6e-24 | 114.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27370.t1 | A0A396JGK5 | 95.9 | 221 | 9 | 0 | 1 | 221 | 36 | 256 | 2.2e-115 | 424.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene27370.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050277 | MS.gene27370 | 0.833903 | 4.08E-56 | -1.69E-46 |
MS.gene050303 | MS.gene27370 | 0.801152 | 1.03E-48 | -1.69E-46 |
MS.gene050815 | MS.gene27370 | 0.802496 | 5.46E-49 | -1.69E-46 |
MS.gene050987 | MS.gene27370 | 0.806918 | 6.51E-50 | -1.69E-46 |
MS.gene051243 | MS.gene27370 | 0.81191 | 5.53E-51 | -1.69E-46 |
MS.gene052286 | MS.gene27370 | 0.821649 | 3.61E-53 | -1.69E-46 |
MS.gene052665 | MS.gene27370 | 0.803756 | 2.99E-49 | -1.69E-46 |
MS.gene054537 | MS.gene27370 | 0.803014 | 4.27E-49 | -1.69E-46 |
MS.gene055512 | MS.gene27370 | 0.801175 | 1.02E-48 | -1.69E-46 |
MS.gene056580 | MS.gene27370 | 0.801897 | 7.25E-49 | -1.69E-46 |
MS.gene056760 | MS.gene27370 | 0.807072 | 6.04E-50 | -1.69E-46 |
MS.gene057057 | MS.gene27370 | 0.82909 | 6.25E-55 | -1.69E-46 |
MS.gene057140 | MS.gene27370 | 0.831012 | 2.12E-55 | -1.69E-46 |
MS.gene057234 | MS.gene27370 | 0.823815 | 1.13E-53 | -1.69E-46 |
MS.gene05795 | MS.gene27370 | 0.816316 | 5.89E-52 | -1.69E-46 |
MS.gene058055 | MS.gene27370 | 0.819279 | 1.26E-52 | -1.69E-46 |
MS.gene058906 | MS.gene27370 | 0.803004 | 4.29E-49 | -1.69E-46 |
MS.gene060297 | MS.gene27370 | 0.811106 | 8.26E-51 | -1.69E-46 |
MS.gene060470 | MS.gene27370 | 0.802288 | 6.02E-49 | -1.69E-46 |
MS.gene060619 | MS.gene27370 | 0.802335 | 5.89E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene27370 | MS.gene67075 | PPI |
MS.gene67073 | MS.gene27370 | PPI |
MS.gene27370 | MS.gene043976 | PPI |
MS.gene24348 | MS.gene27370 | PPI |
MS.gene67076 | MS.gene27370 | PPI |
MS.gene27370 | MS.gene043977 | PPI |
MS.gene67153 | MS.gene27370 | PPI |
MS.gene27370 | MS.gene67090 | PPI |
MS.gene27370 | MS.gene24349 | PPI |
MS.gene27370 | MS.gene24342 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27370.t1 | MTR_1g021440 | 65.179 | 224 | 69 | 3 | 1 | 221 | 37 | 254 | 3.16e-96 | 283 |
MS.gene27370.t1 | MTR_1g021440 | 65.179 | 224 | 69 | 3 | 1 | 221 | 37 | 254 | 1.35e-94 | 282 |
MS.gene27370.t1 | MTR_1g021320 | 60.300 | 267 | 59 | 4 | 1 | 221 | 197 | 462 | 1.48e-94 | 294 |
MS.gene27370.t1 | MTR_1g021320 | 76.613 | 124 | 29 | 0 | 1 | 124 | 40 | 163 | 3.77e-61 | 205 |
MS.gene27370.t1 | MTR_1g021440 | 67.647 | 204 | 58 | 2 | 1 | 201 | 37 | 235 | 1.10e-93 | 276 |
MS.gene27370.t1 | MTR_1g021440 | 67.647 | 204 | 58 | 2 | 1 | 201 | 37 | 235 | 3.95e-92 | 275 |
MS.gene27370.t1 | MTR_1g021350 | 61.674 | 227 | 59 | 6 | 1 | 221 | 36 | 240 | 5.70e-85 | 256 |
MS.gene27370.t1 | MTR_1g021330 | 62.162 | 222 | 55 | 4 | 1 | 221 | 41 | 234 | 8.88e-84 | 254 |
MS.gene27370.t1 | MTR_1g021435 | 60.444 | 225 | 46 | 5 | 1 | 221 | 37 | 222 | 4.37e-78 | 239 |
MS.gene27370.t1 | MTR_1g021380 | 57.143 | 224 | 49 | 5 | 1 | 221 | 36 | 215 | 5.31e-74 | 228 |
MS.gene27370.t1 | MTR_1g021400 | 57.658 | 222 | 56 | 3 | 1 | 221 | 45 | 229 | 1.06e-72 | 225 |
MS.gene27370.t1 | MTR_1g021410 | 56.696 | 224 | 56 | 5 | 1 | 221 | 37 | 222 | 2.26e-67 | 211 |
MS.gene27370.t1 | MTR_1g021500 | 52.423 | 227 | 76 | 6 | 1 | 214 | 41 | 248 | 2.42e-62 | 201 |
MS.gene27370.t1 | MTR_1g021500 | 52.423 | 227 | 76 | 6 | 1 | 214 | 41 | 248 | 6.23e-62 | 201 |
MS.gene27370.t1 | MTR_1g021360 | 54.412 | 204 | 41 | 4 | 1 | 203 | 197 | 349 | 2.13e-60 | 196 |
MS.gene27370.t1 | MTR_1g021360 | 73.600 | 125 | 33 | 0 | 1 | 125 | 40 | 164 | 5.32e-60 | 195 |
MS.gene27370.t1 | MTR_1g021290 | 68.595 | 121 | 38 | 0 | 1 | 121 | 170 | 290 | 7.44e-52 | 171 |
MS.gene27370.t1 | MTR_1g021290 | 73.267 | 101 | 27 | 0 | 1 | 101 | 42 | 142 | 2.91e-48 | 162 |
MS.gene27370.t1 | MTR_1g021270 | 38.372 | 86 | 52 | 1 | 2 | 87 | 31 | 115 | 3.22e-14 | 71.2 |
MS.gene27370.t1 | MTR_7g050710 | 37.838 | 74 | 46 | 0 | 2 | 75 | 29 | 102 | 4.67e-12 | 64.3 |
MS.gene27370.t1 | MTR_3g098790 | 37.500 | 80 | 50 | 0 | 1 | 80 | 28 | 107 | 6.41e-12 | 64.3 |
MS.gene27370.t1 | MTR_7g050640 | 37.333 | 75 | 47 | 0 | 1 | 75 | 28 | 102 | 1.02e-11 | 60.5 |
MS.gene27370.t1 | MTR_7g050580 | 37.975 | 79 | 49 | 0 | 2 | 80 | 29 | 107 | 1.13e-11 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27370.t1 | AT4G33280 | 56.250 | 96 | 41 | 1 | 1 | 95 | 38 | 133 | 6.90e-31 | 115 |
MS.gene27370.t1 | AT4G33280 | 56.250 | 96 | 41 | 1 | 1 | 95 | 38 | 133 | 1.62e-30 | 115 |
MS.gene27370.t1 | AT4G33280 | 56.250 | 96 | 41 | 1 | 1 | 95 | 38 | 133 | 3.24e-30 | 115 |
MS.gene27370.t1 | AT4G34400 | 39.759 | 83 | 50 | 0 | 1 | 83 | 30 | 112 | 2.84e-17 | 79.7 |
MS.gene27370.t1 | AT4G34400 | 39.759 | 83 | 50 | 0 | 1 | 83 | 30 | 112 | 2.84e-17 | 79.7 |
MS.gene27370.t1 | AT3G06220 | 33.784 | 74 | 49 | 0 | 2 | 75 | 25 | 98 | 9.98e-13 | 64.3 |
MS.gene27370.t1 | AT3G18990 | 34.694 | 98 | 55 | 1 | 2 | 90 | 22 | 119 | 1.02e-12 | 66.6 |
MS.gene27370.t1 | AT3G18990 | 34.694 | 98 | 55 | 1 | 2 | 90 | 22 | 119 | 1.02e-12 | 66.6 |
MS.gene27370.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 39 | 113 | 8.69e-12 | 63.9 |
MS.gene27370.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 24 | 98 | 1.05e-11 | 63.5 |
MS.gene27370.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 24 | 98 | 1.05e-11 | 63.5 |
MS.gene27370.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 24 | 98 | 1.05e-11 | 63.5 |
MS.gene27370.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 83 | 157 | 1.06e-11 | 63.9 |
MS.gene27370.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 28 | 115 | 1.29e-11 | 62.4 |
MS.gene27370.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 2 | 89 | 2.24e-11 | 62.4 |
MS.gene27370.t1 | AT5G66980 | 40.506 | 79 | 43 | 1 | 1 | 75 | 24 | 102 | 2.39e-11 | 62.4 |
MS.gene27370.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 28 | 115 | 2.99e-11 | 62.0 |
MS.gene27370.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 28 | 115 | 3.23e-11 | 62.0 |
MS.gene27370.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 25 | 112 | 3.26e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAACTCCACTAGGACCTTTA+AGG | 0.183323 | 1.2:+3139559 | None:intergenic |
CCTGAAAATGTGAACCTTAA+AGG | 0.211774 | 1.2:-3139573 | MS.gene27370:CDS |
GCTGGTCTTCCCCGCTTCTT+AGG | 0.270434 | 1.2:+3139039 | None:intergenic |
AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 1.2:-3139546 | MS.gene27370:CDS |
AACTTCGTTAACAGGCTTCT+TGG | 0.341598 | 1.2:+3139074 | None:intergenic |
CCAGGCGTAACTTCGTTAAC+AGG | 0.352395 | 1.2:+3139066 | None:intergenic |
GTCTTCCCCGCTTCTTAGGC+TGG | 0.353235 | 1.2:+3139043 | None:intergenic |
AATGCGGTTCTGAGAAATTT+CGG | 0.363117 | 1.2:-3139248 | MS.gene27370:CDS |
CCCCGCTTCTTAGGCTGGCC+AGG | 0.381562 | 1.2:+3139048 | None:intergenic |
CCAGCAAAATCAGCTACTTC+TGG | 0.385623 | 1.2:-3139021 | MS.gene27370:CDS |
GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 1.2:-3139545 | MS.gene27370:CDS |
TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 1.2:-3139354 | MS.gene27370:CDS |
GCATCAGCCATGACCTGCTC+AGG | 0.424246 | 1.2:+3139138 | None:intergenic |
TGAGTCTGCTTCCCCTGAGC+AGG | 0.449413 | 1.2:-3139151 | MS.gene27370:CDS |
GCGAGAAAGCAATTGTTGAT+TGG | 0.450466 | 1.2:-3138999 | MS.gene27370:CDS |
TGCTTCCCCTGAGCAGGTCA+TGG | 0.458901 | 1.2:-3139145 | MS.gene27370:CDS |
GAAGTCAACACTGCTTCTAA+TGG | 0.464985 | 1.2:-3139279 | MS.gene27370:CDS |
GCCTGGCCAGCCTAAGAAGC+GGG | 0.466869 | 1.2:-3139049 | MS.gene27370:CDS |
AGAGCCTGCTTTCTCGCATA+AGG | 0.473371 | 1.2:+3139380 | None:intergenic |
CGAGAAAGCAATTGTTGATT+GGG | 0.485091 | 1.2:-3138998 | MS.gene27370:CDS |
GCGGTTCCCTCCCAAACAAC+CGG | 0.485847 | 1.2:-3139105 | MS.gene27370:CDS |
TCTTACTTTGTTAGAAAATG+TGG | 0.486876 | 1.2:-3139360 | MS.gene27370:CDS |
TACTTCACAAACGGTTGGCA+TGG | 0.494310 | 1.2:-3139498 | MS.gene27370:CDS |
GACACCGTTTACTTCACAAA+CGG | 0.514012 | 1.2:-3139507 | MS.gene27370:CDS |
CCAACCGTTTGTGAAGTAAA+CGG | 0.534062 | 1.2:+3139503 | None:intergenic |
CCTGTTAACGAAGTTACGCC+TGG | 0.535294 | 1.2:-3139066 | MS.gene27370:CDS |
AATGAAAAGACTTCTAATGC+TGG | 0.546042 | 1.2:-3139177 | MS.gene27370:CDS |
CCGTTTACTTCACAAACGGT+TGG | 0.558722 | 1.2:-3139503 | MS.gene27370:CDS |
CATCAGCCATGACCTGCTCA+GGG | 0.563227 | 1.2:+3139139 | None:intergenic |
CGCCTGGCCAGCCTAAGAAG+CGG | 0.563693 | 1.2:-3139050 | MS.gene27370:CDS |
GAAAGCAATTGTTGATTGGG+TGG | 0.568458 | 1.2:-3138995 | MS.gene27370:CDS |
ATATTCCACACAACTCCACT+AGG | 0.578077 | 1.2:+3139549 | None:intergenic |
GAGACCTTATGCGAGAAAGC+AGG | 0.587625 | 1.2:-3139384 | MS.gene27370:CDS |
GCAAGAGGGCGACAAGGCAA+AGG | 0.587651 | 1.2:-3139322 | MS.gene27370:CDS |
GGCTGATGCAGTCACTATTG+CGG | 0.596142 | 1.2:-3139124 | MS.gene27370:CDS |
TACTGAGCAAGAGGGCGACA+AGG | 0.599125 | 1.2:-3139328 | MS.gene27370:CDS |
GTGAACCTTAAAGGTCCTAG+TGG | 0.609317 | 1.2:-3139564 | MS.gene27370:CDS |
AAAAGGTCATACTGAGCAAG+AGG | 0.615156 | 1.2:-3139337 | MS.gene27370:CDS |
AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1.2:-3139554 | MS.gene27370:CDS |
GCTTGTAGCAAGGAAAACTC+AGG | 0.631925 | 1.2:-3138973 | None:intergenic |
CCTGGCCAGCCTAAGAAGCG+GGG | 0.640983 | 1.2:-3139048 | MS.gene27370:CDS |
GTCAACACTGCTTCTAATGG+CGG | 0.645750 | 1.2:-3139276 | MS.gene27370:CDS |
TGATTGGGTGGCTTGTAGCA+AGG | 0.654638 | 1.2:-3138983 | MS.gene27370:CDS |
TCTAATGGCGGTGTTGAATG+CGG | 0.661026 | 1.2:-3139264 | MS.gene27370:CDS |
AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 1.2:-3139336 | MS.gene27370:CDS |
ATCAGCCATGACCTGCTCAG+GGG | 0.726483 | 1.2:+3139140 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTGAAGTTTTAATATTTCA+TGG | - | chr1.2:3139181-3139200 | MS.gene27370:CDS | 15.0% |
!!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1.2:3138983-3139002 | None:intergenic | 20.0% |
! | TCTTACTTTGTTAGAAAATG+TGG | - | chr1.2:3139229-3139248 | MS.gene27370:CDS | 25.0% |
! | TTTGTTAGAAAATGTGGAAA+AGG | - | chr1.2:3139235-3139254 | MS.gene27370:CDS | 25.0% |
!! | TTTTCATTGGTATTTTCGAA+AGG | + | chr1.2:3139400-3139419 | None:intergenic | 25.0% |
AATGAAAAGACTTCTAATGC+TGG | - | chr1.2:3139412-3139431 | MS.gene27370:CDS | 30.0% | |
! | AGCATTAGAAGTCTTTTCAT+TGG | + | chr1.2:3139413-3139432 | None:intergenic | 30.0% |
!!! | CTCCTTTTTTTCAAGTACAA+TGG | - | chr1.2:3139148-3139167 | MS.gene27370:CDS | 30.0% |
CCTGAAAATGTGAACCTTAA+AGG | - | chr1.2:3139016-3139035 | MS.gene27370:CDS | 35.0% | |
CGCCATTGTACTTGAAAAAA+AGG | + | chr1.2:3139153-3139172 | None:intergenic | 35.0% | |
! | CGAGAAAGCAATTGTTGATT+GGG | - | chr1.2:3139591-3139610 | MS.gene27370:CDS | 35.0% |
!! | AATGCGGTTCTGAGAAATTT+CGG | - | chr1.2:3139341-3139360 | MS.gene27370:CDS | 35.0% |
!! | TTTTCGAAAGGTACAGCTAA+TGG | + | chr1.2:3139388-3139407 | None:intergenic | 35.0% |
!!! | CCTTTAAGGTTCACATTTTC+AGG | + | chr1.2:3139019-3139038 | None:intergenic | 35.0% |
AAAAGGTCATACTGAGCAAG+AGG | - | chr1.2:3139252-3139271 | MS.gene27370:CDS | 40.0% | |
AAAGGTCATACTGAGCAAGA+GGG | - | chr1.2:3139253-3139272 | MS.gene27370:CDS | 40.0% | |
AACTTCGTTAACAGGCTTCT+TGG | + | chr1.2:3139518-3139537 | None:intergenic | 40.0% | |
AGTGGAGTTGTGTGGAATAT+AGG | - | chr1.2:3139043-3139062 | MS.gene27370:CDS | 40.0% | |
ATATTCCACACAACTCCACT+AGG | + | chr1.2:3139043-3139062 | None:intergenic | 40.0% | |
CCAACCGTTTGTGAAGTAAA+CGG | + | chr1.2:3139089-3139108 | None:intergenic | 40.0% | |
GAAGTCAACACTGCTTCTAA+TGG | - | chr1.2:3139310-3139329 | MS.gene27370:CDS | 40.0% | |
GACACCGTTTACTTCACAAA+CGG | - | chr1.2:3139082-3139101 | MS.gene27370:CDS | 40.0% | |
GCGAGAAAGCAATTGTTGAT+TGG | - | chr1.2:3139590-3139609 | MS.gene27370:CDS | 40.0% | |
GTGGAGTTGTGTGGAATATA+GGG | - | chr1.2:3139044-3139063 | MS.gene27370:CDS | 40.0% | |
! | GAAAGCAATTGTTGATTGGG+TGG | - | chr1.2:3139594-3139613 | MS.gene27370:CDS | 40.0% |
CAACTCCACTAGGACCTTTA+AGG | + | chr1.2:3139033-3139052 | None:intergenic | 45.0% | |
CCAGCAAAATCAGCTACTTC+TGG | - | chr1.2:3139568-3139587 | MS.gene27370:CDS | 45.0% | |
CCGTTTACTTCACAAACGGT+TGG | - | chr1.2:3139086-3139105 | MS.gene27370:CDS | 45.0% | |
GCTTGTAGCAAGGAAAACTC+AGG | - | chr1.2:3139616-3139635 | MS.gene27370:CDS | 45.0% | |
GTCAACACTGCTTCTAATGG+CGG | - | chr1.2:3139313-3139332 | MS.gene27370:CDS | 45.0% | |
GTGAACCTTAAAGGTCCTAG+TGG | - | chr1.2:3139025-3139044 | MS.gene27370:CDS | 45.0% | |
TACTTCACAAACGGTTGGCA+TGG | - | chr1.2:3139091-3139110 | MS.gene27370:CDS | 45.0% | |
! | TCTAATGGCGGTGTTGAATG+CGG | - | chr1.2:3139325-3139344 | MS.gene27370:CDS | 45.0% |
!! | AGGCTTCTTGGTCTTTTTGC+CGG | + | chr1.2:3139506-3139525 | None:intergenic | 45.0% |
!! | CCAGAAGTAGCTGATTTTGC+TGG | + | chr1.2:3139571-3139590 | None:intergenic | 45.0% |
!! | GGTCTTTTTGCCGGTTGTTT+GGG | + | chr1.2:3139497-3139516 | None:intergenic | 45.0% |
!! | TGGTCTTTTTGCCGGTTGTT+TGG | + | chr1.2:3139498-3139517 | None:intergenic | 45.0% |
!! | TTTTTGCCGGTTGTTTGGGA+GGG | + | chr1.2:3139493-3139512 | None:intergenic | 45.0% |
AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1.2:3139035-3139054 | MS.gene27370:CDS | 50.0% | |
AGAGCCTGCTTTCTCGCATA+AGG | + | chr1.2:3139212-3139231 | None:intergenic | 50.0% | |
CCAGGCGTAACTTCGTTAAC+AGG | + | chr1.2:3139526-3139545 | None:intergenic | 50.0% | |
CCTGTTAACGAAGTTACGCC+TGG | - | chr1.2:3139523-3139542 | MS.gene27370:CDS | 50.0% | |
GAGACCTTATGCGAGAAAGC+AGG | - | chr1.2:3139205-3139224 | MS.gene27370:CDS | 50.0% | |
GGCTGATGCAGTCACTATTG+CGG | - | chr1.2:3139465-3139484 | MS.gene27370:CDS | 50.0% | |
! | TGATTGGGTGGCTTGTAGCA+AGG | - | chr1.2:3139606-3139625 | MS.gene27370:CDS | 50.0% |
!! | CTTTTTGCCGGTTGTTTGGG+AGG | + | chr1.2:3139494-3139513 | None:intergenic | 50.0% |
ATCAGCCATGACCTGCTCAG+GGG | + | chr1.2:3139452-3139471 | None:intergenic | 55.0% | |
CATCAGCCATGACCTGCTCA+GGG | + | chr1.2:3139453-3139472 | None:intergenic | 55.0% | |
TACTGAGCAAGAGGGCGACA+AGG | - | chr1.2:3139261-3139280 | MS.gene27370:CDS | 55.0% | |
GCAAGAGGGCGACAAGGCAA+AGG | - | chr1.2:3139267-3139286 | MS.gene27370:CDS | 60.0% | |
GCATCAGCCATGACCTGCTC+AGG | + | chr1.2:3139454-3139473 | None:intergenic | 60.0% | |
GCGGTTCCCTCCCAAACAAC+CGG | - | chr1.2:3139484-3139503 | MS.gene27370:CDS | 60.0% | |
GTCTTCCCCGCTTCTTAGGC+TGG | + | chr1.2:3139549-3139568 | None:intergenic | 60.0% | |
TGAGTCTGCTTCCCCTGAGC+AGG | - | chr1.2:3139438-3139457 | MS.gene27370:CDS | 60.0% | |
TGCTTCCCCTGAGCAGGTCA+TGG | - | chr1.2:3139444-3139463 | MS.gene27370:CDS | 60.0% | |
!! | GCTGGTCTTCCCCGCTTCTT+AGG | + | chr1.2:3139553-3139572 | None:intergenic | 60.0% |
CCTGGCCAGCCTAAGAAGCG+GGG | - | chr1.2:3139541-3139560 | MS.gene27370:CDS | 65.0% | |
CGCCTGGCCAGCCTAAGAAG+CGG | - | chr1.2:3139539-3139558 | MS.gene27370:CDS | 65.0% | |
GCCTGGCCAGCCTAAGAAGC+GGG | - | chr1.2:3139540-3139559 | MS.gene27370:CDS | 65.0% | |
! | CCCCGCTTCTTAGGCTGGCC+AGG | + | chr1.2:3139544-3139563 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 3138974 | 3139637 | 3138974 | ID=MS.gene27370 |
chr1.2 | mRNA | 3138974 | 3139637 | 3138974 | ID=MS.gene27370.t1;Parent=MS.gene27370 |
chr1.2 | exon | 3138974 | 3139637 | 3138974 | ID=MS.gene27370.t1.exon1;Parent=MS.gene27370.t1 |
chr1.2 | CDS | 3138974 | 3139637 | 3138974 | ID=cds.MS.gene27370.t1;Parent=MS.gene27370.t1 |
Gene Sequence |
Protein sequence |