AlfalfaGEDB | MS.gene24342

M. sativa cultivar XinJiangDaYe / MS.gene24342

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24342.t1	XP_024636626.1	96.4	221	8	0	1	221	36	256	8.10E-116	426.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24342.t1	Q8RYD1	56.6	99	40	2	2	99	39	135	9.6e-25	115.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24342.t1	A0A396JGK5	96.4	221	8	0	1	221	36	256	5.8e-116	426.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene24342.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049756	MS.gene24342	0.811743	6.01E-51	-1.69E-46
MS.gene050277	MS.gene24342	0.835263	1.86E-56	-1.69E-46
MS.gene050987	MS.gene24342	0.807214	5.64E-50	-1.69E-46
MS.gene051243	MS.gene24342	0.822308	2.54E-53	-1.69E-46
MS.gene052286	MS.gene24342	0.817689	2.90E-52	-1.69E-46
MS.gene057140	MS.gene24342	0.824765	6.76E-54	-1.69E-46
MS.gene057234	MS.gene24342	0.828862	7.10E-55	-1.69E-46
MS.gene058055	MS.gene24342	0.82151	3.88E-53	-1.69E-46
MS.gene058238	MS.gene24342	0.814699	1.35E-51	-1.69E-46
MS.gene060297	MS.gene24342	0.805457	1.32E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene24342	MS.gene24349	PPI
MS.gene24342	MS.gene043977	PPI
MS.gene24342	MS.gene67090	PPI
MS.gene24342	MS.gene043976	PPI
MS.gene24348	MS.gene24342	PPI
MS.gene27370	MS.gene24342	PPI
MS.gene67073	MS.gene24342	PPI
MS.gene67075	MS.gene24342	PPI
MS.gene67076	MS.gene24342	PPI
MS.gene67153	MS.gene24342	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24342.t1	MTR_1g021440	65.179	224	69	3	1	221	37	254	1.64e-96	283
MS.gene24342.t1	MTR_1g021320	60.674	267	58	4	1	221	197	462	2.41e-95	296
MS.gene24342.t1	MTR_1g021320	77.419	124	28	0	1	124	40	163	6.14e-62	207
MS.gene24342.t1	MTR_1g021440	65.179	224	69	3	1	221	37	254	6.25e-95	283
MS.gene24342.t1	MTR_1g021440	67.647	204	58	2	1	201	37	235	5.54e-94	276
MS.gene24342.t1	MTR_1g021440	67.647	204	58	2	1	201	37	235	1.71e-92	276
MS.gene24342.t1	MTR_1g021350	62.115	227	58	6	1	221	36	240	8.78e-86	258
MS.gene24342.t1	MTR_1g021330	62.162	222	55	4	1	221	41	234	4.34e-84	254
MS.gene24342.t1	MTR_1g021435	60.889	225	45	5	1	221	37	222	3.57e-79	242
MS.gene24342.t1	MTR_1g021400	58.108	222	55	3	1	221	45	229	1.70e-73	227

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene24342.t1	AT4G33280	56.250	96	41	1	1	95	38	133	3.66e-31	115
MS.gene24342.t1	AT4G33280	56.250	96	41	1	1	95	38	133	9.00e-31	115
MS.gene24342.t1	AT4G33280	56.250	96	41	1	1	95	38	133	1.94e-30	116
MS.gene24342.t1	AT4G34400	39.759	83	50	0	1	83	30	112	1.66e-17	80.5
MS.gene24342.t1	AT4G34400	39.759	83	50	0	1	83	30	112	1.66e-17	80.5
MS.gene24342.t1	AT3G18990	35.714	98	54	1	2	90	22	119	1.74e-13	68.9
MS.gene24342.t1	AT3G18990	35.714	98	54	1	2	90	22	119	1.85e-13	68.9
MS.gene24342.t1	AT3G06220	33.784	74	49	0	2	75	25	98	4.78e-13	65.5
MS.gene24342.t1	AT5G66980	41.772	79	42	1	1	75	24	102	5.36e-12	64.3
MS.gene24342.t1	AT5G60130	38.636	88	49	2	1	83	28	115	7.30e-12	63.2

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Find 46 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTCATACTGAGCAAG+AGG	0.615156	1.1:-2895868	MS.gene24342:CDS
AAAGGTCATACTGAGCAAGA+GGG	0.680883	1.1:-2895867	MS.gene24342:CDS
AACTTCGTTAACAGGCTTCT+TGG	0.341598	1.1:+2895605	None:intergenic
AAGGTCCTAGTGGAGTTGTG+TGG	0.624686	1.1:-2896085	MS.gene24342:CDS
AATGAAAAGACTTCTAATGC+TGG	0.546042	1.1:-2895708	MS.gene24342:CDS
AATGCGGTTCTGAGAAATTT+CGG	0.363117	1.1:-2895779	MS.gene24342:CDS
AGAGCCTGCTTTCTCGCATA+AGG	0.473371	1.1:+2895911	None:intergenic
AGTGGAGTTGTGTGGAATAT+AGG	0.300231	1.1:-2896077	MS.gene24342:CDS
ATATTCCACACAACTCCACT+AGG	0.578077	1.1:+2896080	None:intergenic
ATCAGCCATGACCTGCTCAG+GGG	0.726483	1.1:+2895671	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAAAGACTTCTAATGC+TGG	-	chr1.1:2895943-2895962	MS.gene24342:CDS	30.0%
CCTGAAAATGTGAACCTTAA+AGG	-	chr1.1:2895547-2895566	MS.gene24342:CDS	35.0%
CGCCATTGTACTTGAAAAAA+AGG	+	chr1.1:2895684-2895703	None:intergenic	35.0%
AAAAGGTCATACTGAGCAAG+AGG	-	chr1.1:2895783-2895802	MS.gene24342:CDS	40.0%
AAAGGTCATACTGAGCAAGA+GGG	-	chr1.1:2895784-2895803	MS.gene24342:CDS	40.0%
AACTTCGTTAACAGGCTTCT+TGG	+	chr1.1:2896049-2896068	None:intergenic	40.0%
AGTGGAGTTGTGTGGAATAT+AGG	-	chr1.1:2895574-2895593	MS.gene24342:CDS	40.0%
ATATTCCACACAACTCCACT+AGG	+	chr1.1:2895574-2895593	None:intergenic	40.0%
CCAACCGTTTGTGAAGTAAA+CGG	+	chr1.1:2895620-2895639	None:intergenic	40.0%
GAAGTCAACACTGCTTCTAA+TGG	-	chr1.1:2895841-2895860	MS.gene24342:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	2895505	2896168	2895505	ID=MS.gene24342
chr1.1	mRNA	2895505	2896168	2895505	ID=MS.gene24342.t1;Parent=MS.gene24342
chr1.1	exon	2895505	2896168	2895505	ID=MS.gene24342.t1.exon1;Parent=MS.gene24342.t1
chr1.1	CDS	2895505	2896168	2895505	ID=cds.MS.gene24342.t1;Parent=MS.gene24342.t1

Gene Sequence

>MS.gene24342

GCACTTCCTAAAACATTTTCAGACAATTTAAAGAAGAAGTTGCCTGAAAATGTGAACCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGACAACTAAAGATGACACCGTTTACTTCACAAACGGTTGGCAAGGATTTGTGAATGATCACTCTTTGAAAGAGAGTGATCTCCTTTTTTTCAAGTACAATGGCGAATCGTTGTTTGAAGTTTTAATATTTCATGGCGAGACCTTATGCGAGAAAGCAGGCTCTTACTTTGTTAGAAAATGTGGAAAAGGTCATACTGAGCAAGAGGGCGACAAGGCAAAGGTTGCAAAGAATTCTGTTGAAGAAGTCAACACTGCTTCTAATGGCGGTGTTGAATGCGGTTCTGAGAAATTTCGGAAGCTTGACACTATAAGAACACCATTAGCTGTACCTTTCGAAAATACCAATGAAAAGACTTCTAATGCTGGTGTTGAGTCTGCTTCCCCTGAGCAGGTCATGGCTGATGCAGTCACTATTGCGGTTCCCTCCCAAACAACCGGCAAAAAGACCAAGAAGCCTGTTAACGAAGTTACGCCTGGCCAGCCTAAGAAGCGGGGAAGACCAGCAAAATCAGCTACTTCTGGCGAGAAAGCAATTGTTGATTGGGTGGCTTGTAGCAAGGAAAACTCAG

Protein sequence

>MS.gene24342.t1

ALPKTFSDNLKKKLPENVNLKGPSGVVWNIGLTTKDDTVYFTNGWQGFVNDHSLKESDLLFFKYNGESLFEVLIFHGETLCEKAGSYFVRKCGKGHTEQEGDKAKVAKNSVEEVNTASNGGVECGSEKFRKLDTIRTPLAVPFENTNEKTSNAGVESASPEQVMADAVTIAVPSQTTGKKTKKPVNEVTPGQPKKRGRPAKSATSGEKAIVDWVACSKENS