Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24342.t1 | XP_024636626.1 | 96.4 | 221 | 8 | 0 | 1 | 221 | 36 | 256 | 8.10E-116 | 426.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24342.t1 | Q8RYD1 | 56.6 | 99 | 40 | 2 | 2 | 99 | 39 | 135 | 9.6e-25 | 115.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24342.t1 | A0A396JGK5 | 96.4 | 221 | 8 | 0 | 1 | 221 | 36 | 256 | 5.8e-116 | 426.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene24342.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049756 | MS.gene24342 | 0.811743 | 6.01E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene24342 | 0.835263 | 1.86E-56 | -1.69E-46 |
| MS.gene050987 | MS.gene24342 | 0.807214 | 5.64E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene24342 | 0.822308 | 2.54E-53 | -1.69E-46 |
| MS.gene052286 | MS.gene24342 | 0.817689 | 2.90E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene24342 | 0.824765 | 6.76E-54 | -1.69E-46 |
| MS.gene057234 | MS.gene24342 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene058055 | MS.gene24342 | 0.82151 | 3.88E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene24342 | 0.814699 | 1.35E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene24342 | 0.805457 | 1.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene67153 | MS.gene24342 | PPI |
| MS.gene24342 | MS.gene24349 | PPI |
| MS.gene24342 | MS.gene043977 | PPI |
| MS.gene67073 | MS.gene24342 | PPI |
| MS.gene24348 | MS.gene24342 | PPI |
| MS.gene24342 | MS.gene67090 | PPI |
| MS.gene67075 | MS.gene24342 | PPI |
| MS.gene67076 | MS.gene24342 | PPI |
| MS.gene24342 | MS.gene043976 | PPI |
| MS.gene27370 | MS.gene24342 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24342.t1 | MTR_1g021440 | 65.179 | 224 | 69 | 3 | 1 | 221 | 37 | 254 | 1.64e-96 | 283 |
| MS.gene24342.t1 | MTR_1g021320 | 60.674 | 267 | 58 | 4 | 1 | 221 | 197 | 462 | 2.41e-95 | 296 |
| MS.gene24342.t1 | MTR_1g021320 | 77.419 | 124 | 28 | 0 | 1 | 124 | 40 | 163 | 6.14e-62 | 207 |
| MS.gene24342.t1 | MTR_1g021440 | 65.179 | 224 | 69 | 3 | 1 | 221 | 37 | 254 | 6.25e-95 | 283 |
| MS.gene24342.t1 | MTR_1g021440 | 67.647 | 204 | 58 | 2 | 1 | 201 | 37 | 235 | 5.54e-94 | 276 |
| MS.gene24342.t1 | MTR_1g021440 | 67.647 | 204 | 58 | 2 | 1 | 201 | 37 | 235 | 1.71e-92 | 276 |
| MS.gene24342.t1 | MTR_1g021350 | 62.115 | 227 | 58 | 6 | 1 | 221 | 36 | 240 | 8.78e-86 | 258 |
| MS.gene24342.t1 | MTR_1g021330 | 62.162 | 222 | 55 | 4 | 1 | 221 | 41 | 234 | 4.34e-84 | 254 |
| MS.gene24342.t1 | MTR_1g021435 | 60.889 | 225 | 45 | 5 | 1 | 221 | 37 | 222 | 3.57e-79 | 242 |
| MS.gene24342.t1 | MTR_1g021400 | 58.108 | 222 | 55 | 3 | 1 | 221 | 45 | 229 | 1.70e-73 | 227 |
| MS.gene24342.t1 | MTR_1g021380 | 56.696 | 224 | 50 | 5 | 1 | 221 | 36 | 215 | 5.35e-73 | 225 |
| MS.gene24342.t1 | MTR_1g021410 | 57.143 | 224 | 55 | 5 | 1 | 221 | 37 | 222 | 3.38e-68 | 213 |
| MS.gene24342.t1 | MTR_1g021500 | 52.423 | 227 | 76 | 6 | 1 | 214 | 41 | 248 | 1.16e-62 | 201 |
| MS.gene24342.t1 | MTR_1g021500 | 52.423 | 227 | 76 | 6 | 1 | 214 | 41 | 248 | 2.57e-62 | 202 |
| MS.gene24342.t1 | MTR_1g021360 | 74.400 | 125 | 32 | 0 | 1 | 125 | 40 | 164 | 7.03e-61 | 197 |
| MS.gene24342.t1 | MTR_1g021360 | 54.412 | 204 | 41 | 4 | 1 | 203 | 197 | 349 | 8.60e-61 | 197 |
| MS.gene24342.t1 | MTR_1g021290 | 69.421 | 121 | 37 | 0 | 1 | 121 | 170 | 290 | 7.64e-53 | 173 |
| MS.gene24342.t1 | MTR_1g021290 | 74.257 | 101 | 26 | 0 | 1 | 101 | 42 | 142 | 3.01e-49 | 164 |
| MS.gene24342.t1 | MTR_1g021270 | 38.372 | 86 | 52 | 1 | 2 | 87 | 31 | 115 | 1.51e-14 | 72.4 |
| MS.gene24342.t1 | MTR_3g098790 | 37.500 | 80 | 50 | 0 | 1 | 80 | 28 | 107 | 2.27e-12 | 65.5 |
| MS.gene24342.t1 | MTR_7g050710 | 37.838 | 74 | 46 | 0 | 2 | 75 | 29 | 102 | 2.29e-12 | 65.5 |
| MS.gene24342.t1 | MTR_7g050640 | 37.333 | 75 | 47 | 0 | 1 | 75 | 28 | 102 | 3.38e-12 | 61.6 |
| MS.gene24342.t1 | MTR_7g050580 | 37.975 | 79 | 49 | 0 | 2 | 80 | 29 | 107 | 4.21e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24342.t1 | AT4G33280 | 56.250 | 96 | 41 | 1 | 1 | 95 | 38 | 133 | 3.66e-31 | 115 |
| MS.gene24342.t1 | AT4G33280 | 56.250 | 96 | 41 | 1 | 1 | 95 | 38 | 133 | 9.00e-31 | 115 |
| MS.gene24342.t1 | AT4G33280 | 56.250 | 96 | 41 | 1 | 1 | 95 | 38 | 133 | 1.94e-30 | 116 |
| MS.gene24342.t1 | AT4G34400 | 39.759 | 83 | 50 | 0 | 1 | 83 | 30 | 112 | 1.66e-17 | 80.5 |
| MS.gene24342.t1 | AT4G34400 | 39.759 | 83 | 50 | 0 | 1 | 83 | 30 | 112 | 1.66e-17 | 80.5 |
| MS.gene24342.t1 | AT3G18990 | 35.714 | 98 | 54 | 1 | 2 | 90 | 22 | 119 | 1.74e-13 | 68.9 |
| MS.gene24342.t1 | AT3G18990 | 35.714 | 98 | 54 | 1 | 2 | 90 | 22 | 119 | 1.85e-13 | 68.9 |
| MS.gene24342.t1 | AT3G06220 | 33.784 | 74 | 49 | 0 | 2 | 75 | 25 | 98 | 4.78e-13 | 65.5 |
| MS.gene24342.t1 | AT5G66980 | 41.772 | 79 | 42 | 1 | 1 | 75 | 24 | 102 | 5.36e-12 | 64.3 |
| MS.gene24342.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 28 | 115 | 7.30e-12 | 63.2 |
| MS.gene24342.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 39 | 113 | 7.82e-12 | 63.9 |
| MS.gene24342.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 24 | 98 | 9.09e-12 | 63.5 |
| MS.gene24342.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 24 | 98 | 9.09e-12 | 63.5 |
| MS.gene24342.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 24 | 98 | 9.09e-12 | 63.5 |
| MS.gene24342.t1 | AT3G06160 | 36.000 | 75 | 48 | 0 | 1 | 75 | 83 | 157 | 1.00e-11 | 63.9 |
| MS.gene24342.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 2 | 89 | 1.22e-11 | 63.2 |
| MS.gene24342.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 25 | 112 | 1.60e-11 | 63.2 |
| MS.gene24342.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 28 | 115 | 1.64e-11 | 63.2 |
| MS.gene24342.t1 | AT5G60130 | 38.636 | 88 | 49 | 2 | 1 | 83 | 28 | 115 | 1.76e-11 | 62.8 |
Find 46 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCCACTAGGACCTTTA+AGG | 0.183323 | 1.1:+2896090 | None:intergenic |
| CCTGAAAATGTGAACCTTAA+AGG | 0.211774 | 1.1:-2896104 | MS.gene24342:CDS |
| GCTGGTCTTCCCCGCTTCTT+AGG | 0.270434 | 1.1:+2895570 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 1.1:-2896077 | MS.gene24342:CDS |
| AACTTCGTTAACAGGCTTCT+TGG | 0.341598 | 1.1:+2895605 | None:intergenic |
| CCAGGCGTAACTTCGTTAAC+AGG | 0.352395 | 1.1:+2895597 | None:intergenic |
| GTCTTCCCCGCTTCTTAGGC+TGG | 0.353235 | 1.1:+2895574 | None:intergenic |
| AATGCGGTTCTGAGAAATTT+CGG | 0.363117 | 1.1:-2895779 | MS.gene24342:CDS |
| CCCCGCTTCTTAGGCTGGCC+AGG | 0.381562 | 1.1:+2895579 | None:intergenic |
| CCAGCAAAATCAGCTACTTC+TGG | 0.385623 | 1.1:-2895552 | MS.gene24342:CDS |
| GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 1.1:-2896076 | MS.gene24342:CDS |
| TTTGTTAGAAAATGTGGAAA+AGG | 0.421612 | 1.1:-2895885 | MS.gene24342:CDS |
| GCATCAGCCATGACCTGCTC+AGG | 0.424246 | 1.1:+2895669 | None:intergenic |
| TGAGTCTGCTTCCCCTGAGC+AGG | 0.449413 | 1.1:-2895682 | MS.gene24342:CDS |
| GCGAGAAAGCAATTGTTGAT+TGG | 0.450466 | 1.1:-2895530 | MS.gene24342:CDS |
| TGCTTCCCCTGAGCAGGTCA+TGG | 0.458901 | 1.1:-2895676 | MS.gene24342:CDS |
| GAAGTCAACACTGCTTCTAA+TGG | 0.464985 | 1.1:-2895810 | MS.gene24342:CDS |
| GCCTGGCCAGCCTAAGAAGC+GGG | 0.466869 | 1.1:-2895580 | MS.gene24342:CDS |
| AGAGCCTGCTTTCTCGCATA+AGG | 0.473371 | 1.1:+2895911 | None:intergenic |
| CCAACCGTTTGTGAAGTAAA+CGG | 0.478109 | 1.1:+2896034 | None:intergenic |
| CGAGAAAGCAATTGTTGATT+GGG | 0.485091 | 1.1:-2895529 | MS.gene24342:CDS |
| GCGGTTCCCTCCCAAACAAC+CGG | 0.485847 | 1.1:-2895636 | MS.gene24342:CDS |
| TCTTACTTTGTTAGAAAATG+TGG | 0.486876 | 1.1:-2895891 | MS.gene24342:CDS |
| GACACCGTTTACTTCACAAA+CGG | 0.514012 | 1.1:-2896038 | MS.gene24342:CDS |
| TACTTCACAAACGGTTGGCA+AGG | 0.517034 | 1.1:-2896029 | MS.gene24342:CDS |
| CCTGTTAACGAAGTTACGCC+TGG | 0.535294 | 1.1:-2895597 | MS.gene24342:CDS |
| AATGAAAAGACTTCTAATGC+TGG | 0.546042 | 1.1:-2895708 | MS.gene24342:CDS |
| CCGTTTACTTCACAAACGGT+TGG | 0.558722 | 1.1:-2896034 | MS.gene24342:CDS |
| CATCAGCCATGACCTGCTCA+GGG | 0.563227 | 1.1:+2895670 | None:intergenic |
| CGCCTGGCCAGCCTAAGAAG+CGG | 0.563693 | 1.1:-2895581 | MS.gene24342:CDS |
| GAAAGCAATTGTTGATTGGG+TGG | 0.568458 | 1.1:-2895526 | MS.gene24342:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1.1:+2896080 | None:intergenic |
| GAGACCTTATGCGAGAAAGC+AGG | 0.587625 | 1.1:-2895915 | MS.gene24342:CDS |
| GCAAGAGGGCGACAAGGCAA+AGG | 0.587651 | 1.1:-2895853 | MS.gene24342:CDS |
| GGCTGATGCAGTCACTATTG+CGG | 0.596142 | 1.1:-2895655 | MS.gene24342:CDS |
| TACTGAGCAAGAGGGCGACA+AGG | 0.599125 | 1.1:-2895859 | MS.gene24342:CDS |
| GTGAACCTTAAAGGTCCTAG+TGG | 0.609317 | 1.1:-2896095 | MS.gene24342:CDS |
| AAAAGGTCATACTGAGCAAG+AGG | 0.615156 | 1.1:-2895868 | MS.gene24342:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1.1:-2896085 | MS.gene24342:CDS |
| GCTTGTAGCAAGGAAAACTC+AGG | 0.631925 | 1.1:-2895504 | None:intergenic |
| CCTGGCCAGCCTAAGAAGCG+GGG | 0.640983 | 1.1:-2895579 | MS.gene24342:CDS |
| GTCAACACTGCTTCTAATGG+CGG | 0.645750 | 1.1:-2895807 | MS.gene24342:CDS |
| TGATTGGGTGGCTTGTAGCA+AGG | 0.654638 | 1.1:-2895514 | MS.gene24342:CDS |
| TCTAATGGCGGTGTTGAATG+CGG | 0.661026 | 1.1:-2895795 | MS.gene24342:CDS |
| AAAGGTCATACTGAGCAAGA+GGG | 0.680883 | 1.1:-2895867 | MS.gene24342:CDS |
| ATCAGCCATGACCTGCTCAG+GGG | 0.726483 | 1.1:+2895671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAAGTTTTAATATTTCA+TGG | - | chr1.1:2895712-2895731 | MS.gene24342:CDS | 15.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1.1:2895514-2895533 | None:intergenic | 20.0% |
| ! | TCTTACTTTGTTAGAAAATG+TGG | - | chr1.1:2895760-2895779 | MS.gene24342:CDS | 25.0% |
| ! | TTTGTTAGAAAATGTGGAAA+AGG | - | chr1.1:2895766-2895785 | MS.gene24342:CDS | 25.0% |
| !! | TTTTCATTGGTATTTTCGAA+AGG | + | chr1.1:2895931-2895950 | None:intergenic | 25.0% |
| AATGAAAAGACTTCTAATGC+TGG | - | chr1.1:2895943-2895962 | MS.gene24342:CDS | 30.0% | |
| ! | AGCATTAGAAGTCTTTTCAT+TGG | + | chr1.1:2895944-2895963 | None:intergenic | 30.0% |
| !!! | CTCCTTTTTTTCAAGTACAA+TGG | - | chr1.1:2895679-2895698 | MS.gene24342:CDS | 30.0% |
| CCTGAAAATGTGAACCTTAA+AGG | - | chr1.1:2895547-2895566 | MS.gene24342:CDS | 35.0% | |
| CGCCATTGTACTTGAAAAAA+AGG | + | chr1.1:2895684-2895703 | None:intergenic | 35.0% | |
| ! | CGAGAAAGCAATTGTTGATT+GGG | - | chr1.1:2896122-2896141 | MS.gene24342:CDS | 35.0% |
| !! | AATGCGGTTCTGAGAAATTT+CGG | - | chr1.1:2895872-2895891 | MS.gene24342:CDS | 35.0% |
| !! | TTTTCGAAAGGTACAGCTAA+TGG | + | chr1.1:2895919-2895938 | None:intergenic | 35.0% |
| !!! | CCTTTAAGGTTCACATTTTC+AGG | + | chr1.1:2895550-2895569 | None:intergenic | 35.0% |
| AAAAGGTCATACTGAGCAAG+AGG | - | chr1.1:2895783-2895802 | MS.gene24342:CDS | 40.0% | |
| AAAGGTCATACTGAGCAAGA+GGG | - | chr1.1:2895784-2895803 | MS.gene24342:CDS | 40.0% | |
| AACTTCGTTAACAGGCTTCT+TGG | + | chr1.1:2896049-2896068 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr1.1:2895574-2895593 | MS.gene24342:CDS | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | + | chr1.1:2895574-2895593 | None:intergenic | 40.0% | |
| CCAACCGTTTGTGAAGTAAA+CGG | + | chr1.1:2895620-2895639 | None:intergenic | 40.0% | |
| GAAGTCAACACTGCTTCTAA+TGG | - | chr1.1:2895841-2895860 | MS.gene24342:CDS | 40.0% | |
| GACACCGTTTACTTCACAAA+CGG | - | chr1.1:2895613-2895632 | MS.gene24342:CDS | 40.0% | |
| GCGAGAAAGCAATTGTTGAT+TGG | - | chr1.1:2896121-2896140 | MS.gene24342:CDS | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | - | chr1.1:2895575-2895594 | MS.gene24342:CDS | 40.0% | |
| ! | GAAAGCAATTGTTGATTGGG+TGG | - | chr1.1:2896125-2896144 | MS.gene24342:CDS | 40.0% |
| CAACTCCACTAGGACCTTTA+AGG | + | chr1.1:2895564-2895583 | None:intergenic | 45.0% | |
| CCAGCAAAATCAGCTACTTC+TGG | - | chr1.1:2896099-2896118 | MS.gene24342:CDS | 45.0% | |
| CCGTTTACTTCACAAACGGT+TGG | - | chr1.1:2895617-2895636 | MS.gene24342:CDS | 45.0% | |
| GCTTGTAGCAAGGAAAACTC+AGG | - | chr1.1:2896147-2896166 | MS.gene24342:CDS | 45.0% | |
| GTCAACACTGCTTCTAATGG+CGG | - | chr1.1:2895844-2895863 | MS.gene24342:CDS | 45.0% | |
| GTGAACCTTAAAGGTCCTAG+TGG | - | chr1.1:2895556-2895575 | MS.gene24342:CDS | 45.0% | |
| TACTTCACAAACGGTTGGCA+AGG | - | chr1.1:2895622-2895641 | MS.gene24342:CDS | 45.0% | |
| ! | TCTAATGGCGGTGTTGAATG+CGG | - | chr1.1:2895856-2895875 | MS.gene24342:CDS | 45.0% |
| !! | AGGCTTCTTGGTCTTTTTGC+CGG | + | chr1.1:2896037-2896056 | None:intergenic | 45.0% |
| !! | CCAGAAGTAGCTGATTTTGC+TGG | + | chr1.1:2896102-2896121 | None:intergenic | 45.0% |
| !! | GGTCTTTTTGCCGGTTGTTT+GGG | + | chr1.1:2896028-2896047 | None:intergenic | 45.0% |
| !! | TGGTCTTTTTGCCGGTTGTT+TGG | + | chr1.1:2896029-2896048 | None:intergenic | 45.0% |
| !! | TTTTTGCCGGTTGTTTGGGA+GGG | + | chr1.1:2896024-2896043 | None:intergenic | 45.0% |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1.1:2895566-2895585 | MS.gene24342:CDS | 50.0% | |
| AGAGCCTGCTTTCTCGCATA+AGG | + | chr1.1:2895743-2895762 | None:intergenic | 50.0% | |
| CCAGGCGTAACTTCGTTAAC+AGG | + | chr1.1:2896057-2896076 | None:intergenic | 50.0% | |
| CCTGTTAACGAAGTTACGCC+TGG | - | chr1.1:2896054-2896073 | MS.gene24342:CDS | 50.0% | |
| GAGACCTTATGCGAGAAAGC+AGG | - | chr1.1:2895736-2895755 | MS.gene24342:CDS | 50.0% | |
| GGCTGATGCAGTCACTATTG+CGG | - | chr1.1:2895996-2896015 | MS.gene24342:CDS | 50.0% | |
| ! | TGATTGGGTGGCTTGTAGCA+AGG | - | chr1.1:2896137-2896156 | MS.gene24342:CDS | 50.0% |
| !! | CTTTTTGCCGGTTGTTTGGG+AGG | + | chr1.1:2896025-2896044 | None:intergenic | 50.0% |
| ATCAGCCATGACCTGCTCAG+GGG | + | chr1.1:2895983-2896002 | None:intergenic | 55.0% | |
| CATCAGCCATGACCTGCTCA+GGG | + | chr1.1:2895984-2896003 | None:intergenic | 55.0% | |
| TACTGAGCAAGAGGGCGACA+AGG | - | chr1.1:2895792-2895811 | MS.gene24342:CDS | 55.0% | |
| GCAAGAGGGCGACAAGGCAA+AGG | - | chr1.1:2895798-2895817 | MS.gene24342:CDS | 60.0% | |
| GCATCAGCCATGACCTGCTC+AGG | + | chr1.1:2895985-2896004 | None:intergenic | 60.0% | |
| GCGGTTCCCTCCCAAACAAC+CGG | - | chr1.1:2896015-2896034 | MS.gene24342:CDS | 60.0% | |
| GTCTTCCCCGCTTCTTAGGC+TGG | + | chr1.1:2896080-2896099 | None:intergenic | 60.0% | |
| TGAGTCTGCTTCCCCTGAGC+AGG | - | chr1.1:2895969-2895988 | MS.gene24342:CDS | 60.0% | |
| TGCTTCCCCTGAGCAGGTCA+TGG | - | chr1.1:2895975-2895994 | MS.gene24342:CDS | 60.0% | |
| !! | GCTGGTCTTCCCCGCTTCTT+AGG | + | chr1.1:2896084-2896103 | None:intergenic | 60.0% |
| CCTGGCCAGCCTAAGAAGCG+GGG | - | chr1.1:2896072-2896091 | MS.gene24342:CDS | 65.0% | |
| CGCCTGGCCAGCCTAAGAAG+CGG | - | chr1.1:2896070-2896089 | MS.gene24342:CDS | 65.0% | |
| GCCTGGCCAGCCTAAGAAGC+GGG | - | chr1.1:2896071-2896090 | MS.gene24342:CDS | 65.0% | |
| ! | CCCCGCTTCTTAGGCTGGCC+AGG | + | chr1.1:2896075-2896094 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 2895505 | 2896168 | 2895505 | ID=MS.gene24342 |
| chr1.1 | mRNA | 2895505 | 2896168 | 2895505 | ID=MS.gene24342.t1;Parent=MS.gene24342 |
| chr1.1 | exon | 2895505 | 2896168 | 2895505 | ID=MS.gene24342.t1.exon1;Parent=MS.gene24342.t1 |
| chr1.1 | CDS | 2895505 | 2896168 | 2895505 | ID=cds.MS.gene24342.t1;Parent=MS.gene24342.t1 |
| Gene Sequence |
| Protein sequence |
