AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24349

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24349.t1 MTR_1g021290 93.820 178 9 2 1 177 170 346 2.56e-112 326
MS.gene24349.t1 MTR_1g021290 73.529 102 26 1 1 102 42 142 3.63e-46 157
MS.gene24349.t1 MTR_1g021320 50.613 326 70 4 1 236 197 521 8.34e-90 282
MS.gene24349.t1 MTR_1g021320 71.074 121 34 1 1 121 40 159 5.47e-50 174
MS.gene24349.t1 MTR_1g021435 59.756 246 71 4 1 236 37 264 1.01e-86 261
MS.gene24349.t1 MTR_1g021440 51.439 278 75 5 1 236 37 296 7.81e-81 244
MS.gene24349.t1 MTR_1g021400 57.371 251 68 6 1 236 45 271 1.08e-79 243
MS.gene24349.t1 MTR_1g021440 51.439 278 75 5 1 236 37 296 3.60e-79 243
MS.gene24349.t1 MTR_1g021410 55.422 249 77 5 1 236 37 264 6.35e-77 236
MS.gene24349.t1 MTR_1g021440 51.504 266 75 5 1 236 37 278 1.95e-76 233
MS.gene24349.t1 MTR_1g021440 51.504 266 75 5 1 236 37 278 1.14e-74 231
MS.gene24349.t1 MTR_1g021330 54.086 257 73 8 1 233 41 276 1.55e-73 228
MS.gene24349.t1 MTR_1g021360 55.696 237 60 6 1 236 197 389 1.64e-71 226
MS.gene24349.t1 MTR_1g021360 72.727 121 32 1 1 121 40 159 6.05e-52 175
MS.gene24349.t1 MTR_1g021380 54.118 255 62 8 1 236 36 254 2.47e-71 221
MS.gene24349.t1 MTR_1g021350 53.623 207 66 6 1 178 36 241 8.55e-58 187
MS.gene24349.t1 MTR_1g021270 38.367 245 136 6 2 236 31 270 1.42e-36 135
MS.gene24349.t1 MTR_1g021500 40.081 247 70 9 1 190 41 266 4.55e-36 132
MS.gene24349.t1 MTR_1g021500 40.081 247 70 9 1 190 41 266 5.58e-36 133
MS.gene24349.t1 MTR_1g021295 94.915 59 3 0 178 236 73 131 1.30e-30 113
MS.gene24349.t1 MTR_7g050640 38.961 77 46 1 1 77 28 103 1.04e-12 63.2
MS.gene24349.t1 MTR_7g050710 36.782 87 53 2 2 88 29 113 3.02e-12 65.5
MS.gene24349.t1 MTR_7g050580 39.474 76 45 1 2 77 29 103 3.77e-12 65.1
MS.gene24349.t1 MTR_7g050720 30.088 113 75 2 2 114 26 134 8.50e-12 63.9
MS.gene24349.t1 MTR_7g050590 35.802 81 51 1 1 81 1 80 1.88e-11 62.8
MS.gene24349.t1 MTR_3g098790 37.662 77 47 1 1 77 28 103 3.26e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24349.t1 AT4G33280 51.961 102 47 2 1 101 38 138 4.53e-29 110
MS.gene24349.t1 AT4G33280 45.455 121 63 3 1 119 38 157 1.23e-28 110
MS.gene24349.t1 AT4G33280 51.961 102 47 2 1 101 38 138 2.03e-28 111
MS.gene24349.t1 AT4G34400 36.905 84 52 1 1 84 30 112 3.61e-13 68.6
MS.gene24349.t1 AT4G34400 36.905 84 52 1 1 84 30 112 3.61e-13 68.6

Find 51 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACTCCACTAGGACCTTTA+AGG 0.191352 1.1:+2941960 None:intergenic
CCAGAAAATGTGACCCTTAA+AGG 0.236805 1.1:-2941974 MS.gene24349:CDS
GATCACCAAAAGCTGCTAAT+TGG 0.248794 1.1:-2941553 MS.gene24349:CDS
TCTACCTTCCCACTTCTATT+CGG 0.257101 1.1:+2940545 None:intergenic
CACTGAATAGCTGCGGTCTT+AGG 0.262227 1.1:+2941617 None:intergenic
ATCACCAAAAGCTGCTAATT+GGG 0.331816 1.1:-2941552 MS.gene24349:CDS
GCACCCCAATTAGCAGCTTT+TGG 0.336856 1.1:+2941548 None:intergenic
GAGTTACATGGAAGAATATA+AGG 0.351517 1.1:-2941943 MS.gene24349:CDS
TGGTGATCTTCTTCTCCTCT+TGG 0.352191 1.1:+2941568 None:intergenic
CTACCTTCCCACTTCTATTC+GGG 0.356067 1.1:+2940546 None:intergenic
GCATCATCCGTGAACTGCTC+AGG 0.396249 1.1:+2941644 None:intergenic
TTTAACAAAATATGGAAATG+AGG 0.449590 1.1:+2940442 None:intergenic
ACTGAATAGCTGCGGTCTTA+GGG 0.455599 1.1:+2941618 None:intergenic
GTCAATACTGCTTCTAATGC+TGG 0.468501 1.1:-2941674 MS.gene24349:CDS
CTTCCCACTTCTATTCGGGC+TGG 0.473485 1.1:+2940550 None:intergenic
GAAATGAGGAGGAAAATGAT+TGG 0.481463 1.1:+2940456 None:intergenic
CAGTGTCCCTTCCTACCAAC+CGG 0.487408 1.1:-2941599 MS.gene24349:CDS
CATCATCCGTGAACTGCTCA+GGG 0.491192 1.1:+2941645 None:intergenic
ACGAGAACCACTGACATTGA+AGG 0.493660 1.1:+2940409 None:intergenic
CAATGGTGAATCGCACTTTG+AGG 0.494915 1.1:-2941822 MS.gene24349:CDS
AACTCCACTAGGACCTTTAA+GGG 0.495173 1.1:+2941961 None:intergenic
CCCCTTGTGCTGTTTGAGCA+TGG 0.505067 1.1:+2941735 None:intergenic
GGGTGCGAGAGCACATGCTT+GGG 0.514835 1.1:-2941531 MS.gene24349:CDS
CTGTTTACTTCGTGGACGGT+TGG 0.525501 1.1:-2941901 MS.gene24349:CDS
TGATTCCCCTGAGCAGTTCA+CGG 0.528517 1.1:-2941651 MS.gene24349:CDS
AAATGAGGAGGAAAATGATT+GGG 0.529211 1.1:+2940457 None:intergenic
GGCACTGTTTACTTCGTGGA+CGG 0.546441 1.1:-2941905 MS.gene24349:CDS
CACCATTGTACTTACAGACA+AGG 0.550322 1.1:+2941837 None:intergenic
GGGGTGCGAGAGCACATGCT+TGG 0.551774 1.1:-2941532 MS.gene24349:CDS
GGCCATGCTCAAACAGCACA+AGG 0.557535 1.1:-2941737 MS.gene24349:CDS
AAGGTCCTAGTGGAGTTACA+TGG 0.559188 1.1:-2941955 MS.gene24349:CDS
CCATGCTCAAACAGCACAAG+GGG 0.563471 1.1:-2941735 MS.gene24349:CDS
AGATGGCACTGTTTACTTCG+TGG 0.564148 1.1:-2941909 MS.gene24349:CDS
GCAGCCAGCCCGAATAGAAG+TGG 0.568438 1.1:-2940554 MS.gene24349:CDS
AACAAAATATGGAAATGAGG+AGG 0.576763 1.1:+2940445 None:intergenic
ATTAAAGCCTTCAATGTCAG+TGG 0.584287 1.1:-2940416 MS.gene24349:CDS
GCCATGCTCAAACAGCACAA+GGG 0.608681 1.1:-2941736 MS.gene24349:CDS
TCACCAAAAGCTGCTAATTG+GGG 0.618986 1.1:-2941551 MS.gene24349:CDS
ATAAGGCTGACAACTAGAGA+TGG 0.621631 1.1:-2941926 MS.gene24349:CDS
CAGCCAGCCCGAATAGAAGT+GGG 0.622825 1.1:-2940553 MS.gene24349:CDS
TTCTTCCATGTAACTCCACT+AGG 0.623495 1.1:+2941950 None:intergenic
GTGACCCTTAAAGGTCCTAG+TGG 0.630968 1.1:-2941965 MS.gene24349:CDS
AAAGTCAACAGCACTTGTTG+AGG 0.643971 1.1:-2940489 MS.gene24349:CDS
CAGCCCGAATAGAAGTGGGA+AGG 0.644571 1.1:-2940549 MS.gene24349:CDS
TTCCTTGTCTGTAAGTACAA+TGG 0.651999 1.1:-2941839 MS.gene24349:CDS
CAACCGGCAAAAGAACCAAG+AGG 0.662281 1.1:-2941583 MS.gene24349:CDS
AAGCTCCGCTGAAAATACAA+TGG 0.674487 1.1:+2940519 None:intergenic
ACTTGTAACAAGCAACACCC+AGG 0.683080 1.1:-2941506 MS.gene24349:intron
GAAGGGACACTGAATAGCTG+CGG 0.686057 1.1:+2941610 None:intergenic
ATCATCCGTGAACTGCTCAG+GGG 0.723242 1.1:+2941646 None:intergenic
CATGCTCAAACAGCACAAGG+GGG 0.765396 1.1:-2941734 MS.gene24349:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTAACCAAAAAAAAAA+TGG + chr1.1:2941084-2941103 None:intergenic 15.0%
!! TTTAATATCGTAAAAGTTAA+TGG + chr1.1:2940959-2940978 None:intergenic 15.0%
!! TTTACTTAAAAATGACATAT+CGG - chr1.1:2941215-2941234 MS.gene24349:intron 15.0%
!!! AAAATTGATTTATTTGAACT+AGG + chr1.1:2941241-2941260 None:intergenic 15.0%
!!! TTAACTTTTACGATATTAAA+TGG - chr1.1:2940959-2940978 MS.gene24349:intron 15.0%
!! AATCATGAGTTACAAATAAA+AGG + chr1.1:2941824-2941843 None:intergenic 20.0%
!! ATCAAATGAAAAAAGAAAAG+TGG + chr1.1:2941117-2941136 None:intergenic 20.0%
!! TTTAACAAAATATGGAAATG+AGG + chr1.1:2941980-2941999 None:intergenic 20.0%
!!! AAATTGTCTGAAAATGTTTT+AGG + chr1.1:2940412-2940431 None:intergenic 20.0%
!!! AAGAAAGAAATATTTTAACC+TGG + chr1.1:2940934-2940953 None:intergenic 20.0%
!!! AGAAAGAAATATTTTAACCT+GGG + chr1.1:2940933-2940952 None:intergenic 20.0%
!!! TGTTTATGTTGATGATATTA+AGG + chr1.1:2941588-2941607 None:intergenic 20.0%
! AATGAAAAAAGAAAAGTGGT+TGG + chr1.1:2941113-2941132 None:intergenic 25.0%
!! AATACTACTTCTCTTCATTT+TGG - chr1.1:2941510-2941529 MS.gene24349:CDS 25.0%
!!! GTAGCTAACCATTTTTTTTT+TGG - chr1.1:2941073-2941092 MS.gene24349:intron 25.0%
!!! TCTTATTTTGTCGAAAAATG+CGG - chr1.1:2940661-2940680 MS.gene24349:intron 25.0%
!!! TTTGAGGTTTTAATCTTTGA+TGG - chr1.1:2940613-2940632 MS.gene24349:intron 25.0%
AAATGAGGAGGAAAATGATT+GGG + chr1.1:2941965-2941984 None:intergenic 30.0%
AACAAAATATGGAAATGAGG+AGG + chr1.1:2941977-2941996 None:intergenic 30.0%
AAGAGAAGTAGTATTATCGA+TGG + chr1.1:2941505-2941524 None:intergenic 30.0%
AGACAGTTTAATAGCCATTA+AGG + chr1.1:2941542-2941561 None:intergenic 30.0%
GACAGTTTAATAGCCATTAA+GGG + chr1.1:2941541-2941560 None:intergenic 30.0%
GAGTTACATGGAAGAATATA+AGG - chr1.1:2940476-2940495 MS.gene24349:CDS 30.0%
GATGTTCATACATGATGTAT+CGG - chr1.1:2941163-2941182 MS.gene24349:intron 30.0%
TAAGCTCTGTTATGAATATC+TGG + chr1.1:2941800-2941819 None:intergenic 30.0%
TTATGTCATCCTTCACAAAT+AGG + chr1.1:2941411-2941430 None:intergenic 30.0%
TTTAATAGCCATTAAGGGAA+AGG + chr1.1:2941536-2941555 None:intergenic 30.0%
! CTTTAGTTCAAACATTCACA+AGG + chr1.1:2941632-2941651 None:intergenic 30.0%
!! ACTAGATATTCGTATTGACT+GGG + chr1.1:2940987-2941006 None:intergenic 30.0%
AGAAGTAGTATTATCGATGG+CGG + chr1.1:2941502-2941521 None:intergenic 35.0%
ATCACCAAAAGCTGCTAATT+GGG - chr1.1:2940867-2940886 MS.gene24349:intron 35.0%
ATTAAAGCCTTCAATGTCAG+TGG - chr1.1:2942003-2942022 MS.gene24349:CDS 35.0%
CAGAATGAAATCAAATGCAG+TGG + chr1.1:2941693-2941712 None:intergenic 35.0%
GAAATGAGGAGGAAAATGAT+TGG + chr1.1:2941966-2941985 None:intergenic 35.0%
GGAGAGAGGAATATATATAG+AGG + chr1.1:2941270-2941289 None:intergenic 35.0%
TAGCAAACTGATACTTGTCT+AGG - chr1.1:2941752-2941771 MS.gene24349:CDS 35.0%
TAGTTCAAACATTCACAAGG+AGG + chr1.1:2941629-2941648 None:intergenic 35.0%
TTCCTTGTCTGTAAGTACAA+TGG - chr1.1:2940580-2940599 MS.gene24349:intron 35.0%
TTGGGCTATAAGAAAAGTCA+AGG + chr1.1:2941665-2941684 None:intergenic 35.0%
! CACTAGATATTCGTATTGAC+TGG + chr1.1:2940988-2941007 None:intergenic 35.0%
! CACTGCATTTGATTTCATTC+TGG - chr1.1:2941691-2941710 MS.gene24349:CDS 35.0%
! TAGACAAGTATCAGTTTGCT+AGG + chr1.1:2941753-2941772 None:intergenic 35.0%
! TCTCGAGTGTTGTCAAATAT+CGG - chr1.1:2941342-2941361 MS.gene24349:intron 35.0%
!! AGACAAGTATCAGTTTGCTA+GGG + chr1.1:2941752-2941771 None:intergenic 35.0%
!! TCGAGATAAAAGTGCTTAGT+TGG + chr1.1:2941328-2941347 None:intergenic 35.0%
!!! GTGGTGGATTTTTTAACAAC+CGG - chr1.1:2941380-2941399 MS.gene24349:intron 35.0%
AACTCCACTAGGACCTTTAA+GGG + chr1.1:2940461-2940480 None:intergenic 40.0%
AAGCTCCGCTGAAAATACAA+TGG + chr1.1:2941903-2941922 None:intergenic 40.0%
ATAAGGCTGACAACTAGAGA+TGG - chr1.1:2940493-2940512 MS.gene24349:CDS 40.0%
ATAGGGAGAGAAACACACAT+GGG + chr1.1:2941291-2941310 None:intergenic 40.0%
ATATCCACCACAAAACACCA+TGG + chr1.1:2941434-2941453 None:intergenic 40.0%
CACCATTGTACTTACAGACA+AGG + chr1.1:2940585-2940604 None:intergenic 40.0%
CCAGAAAATGTGACCCTTAA+AGG - chr1.1:2940445-2940464 MS.gene24349:CDS 40.0%
GATCACCAAAAGCTGCTAAT+TGG - chr1.1:2940866-2940885 MS.gene24349:intron 40.0%
GTCAATACTGCTTCTAATGC+TGG - chr1.1:2940745-2940764 MS.gene24349:intron 40.0%
TAACTCCACTAGGACCTTTA+AGG + chr1.1:2940462-2940481 None:intergenic 40.0%
TCACCAAAAGCTGCTAATTG+GGG - chr1.1:2940868-2940887 MS.gene24349:intron 40.0%
TCTACCTTCCCACTTCTATT+CGG + chr1.1:2941877-2941896 None:intergenic 40.0%
TCTCTCAGTCAAGTAATCTC+TGG - chr1.1:2941559-2941578 MS.gene24349:CDS 40.0%
TGAACTGTTCAATTCCTCAG+AGG - chr1.1:2941843-2941862 MS.gene24349:CDS 40.0%
TGGCAAGTTAGCTAGAGATA+GGG + chr1.1:2941308-2941327 None:intergenic 40.0%
TGTGAAGGATGACATAACCA+TGG - chr1.1:2941414-2941433 MS.gene24349:intron 40.0%
TTCTTCCATGTAACTCCACT+AGG + chr1.1:2940472-2940491 None:intergenic 40.0%
TTGGCAAGTTAGCTAGAGAT+AGG + chr1.1:2941309-2941328 None:intergenic 40.0%
! AAAGTCAACAGCACTTGTTG+AGG - chr1.1:2941930-2941949 MS.gene24349:CDS 40.0%
! ATAACCATGGTGTTTTGTGG+TGG - chr1.1:2941427-2941446 MS.gene24349:intron 40.0%
! GACATAACCATGGTGTTTTG+TGG - chr1.1:2941424-2941443 MS.gene24349:intron 40.0%
! GACGACCATTGTATTTTCAG+CGG - chr1.1:2941895-2941914 MS.gene24349:CDS 40.0%
!! CATTTTGGCCTTTCCCTTAA+TGG - chr1.1:2941525-2941544 MS.gene24349:CDS 40.0%
!! CCTTTAAGGGTCACATTTTC+TGG + chr1.1:2940448-2940467 None:intergenic 40.0%
!!! ATGGTGTTTTGTGGTGGATA+TGG - chr1.1:2941433-2941452 MS.gene24349:intron 40.0%
AAGGTCCTAGTGGAGTTACA+TGG - chr1.1:2940464-2940483 MS.gene24349:CDS 45.0%
ACGAGAACCACTGACATTGA+AGG + chr1.1:2942013-2942032 None:intergenic 45.0%
ACTGAATAGCTGCGGTCTTA+GGG + chr1.1:2940804-2940823 None:intergenic 45.0%
ACTTGTAACAAGCAACACCC+AGG - chr1.1:2940913-2940932 MS.gene24349:intron 45.0%
AGATGGCACTGTTTACTTCG+TGG - chr1.1:2940510-2940529 MS.gene24349:CDS 45.0%
ATCAAATGCAGTGGTGTGCT+TGG + chr1.1:2941684-2941703 None:intergenic 45.0%
CAATGGTGAATCGCACTTTG+AGG - chr1.1:2940597-2940616 MS.gene24349:intron 45.0%
CCTTCACAAATAGGTCATGC+CGG + chr1.1:2941402-2941421 None:intergenic 45.0%
CTACCTTCCCACTTCTATTC+GGG + chr1.1:2941876-2941895 None:intergenic 45.0%
GATAGGGAGAGAAACACACA+TGG + chr1.1:2941292-2941311 None:intergenic 45.0%
GGAAAGCCAAAAATCCCCAT+AGG + chr1.1:2941464-2941483 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr1.1:2941348-2941367 MS.gene24349:intron 45.0%
TCAAATGCAGTGGTGTGCTT+GGG + chr1.1:2941683-2941702 None:intergenic 45.0%
TGGTGATCTTCTTCTCCTCT+TGG + chr1.1:2940854-2940873 None:intergenic 45.0%
TTGTCAAATATCGGCCATGG+CGG - chr1.1:2941351-2941370 MS.gene24349:intron 45.0%
!! GTAGTATTATCGATGGCGGA+TGG + chr1.1:2941498-2941517 None:intergenic 45.0%
!! TCTCCTCTTGGTTCTTTTGC+CGG + chr1.1:2940842-2940861 None:intergenic 45.0%
!!! GGATTTTTGGCTTTCCGTCA+CGG - chr1.1:2941468-2941487 MS.gene24349:intron 45.0%
!!! GTGTTTTGTGGTGGATATGG+CGG - chr1.1:2941436-2941455 MS.gene24349:intron 45.0%
!!! TTAATTATTTTAACAAAATA+TGG + chr1.1:2941988-2942007 None:intergenic 5.0%
ATCATCCGTGAACTGCTCAG+GGG + chr1.1:2940776-2940795 None:intergenic 50.0%
CAACCGGCAAAAGAACCAAG+AGG - chr1.1:2940836-2940855 MS.gene24349:intron 50.0%
CACTGAATAGCTGCGGTCTT+AGG + chr1.1:2940805-2940824 None:intergenic 50.0%
CATCATCCGTGAACTGCTCA+GGG + chr1.1:2940777-2940796 None:intergenic 50.0%
CATGCTCAAACAGCACAAGG+GGG - chr1.1:2940685-2940704 MS.gene24349:intron 50.0%
CCATGCTCAAACAGCACAAG+GGG - chr1.1:2940684-2940703 MS.gene24349:intron 50.0%
CCGGCATGACCTATTTGTGA+AGG - chr1.1:2941399-2941418 MS.gene24349:intron 50.0%
CTGTTTACTTCGTGGACGGT+TGG - chr1.1:2940518-2940537 MS.gene24349:CDS 50.0%
GAAGGGACACTGAATAGCTG+CGG + chr1.1:2940812-2940831 None:intergenic 50.0%
GAGAAACACACATGGGAGAG+AGG + chr1.1:2941284-2941303 None:intergenic 50.0%
GCCATGCTCAAACAGCACAA+GGG - chr1.1:2940683-2940702 MS.gene24349:intron 50.0%
GGCACTGTTTACTTCGTGGA+CGG - chr1.1:2940514-2940533 MS.gene24349:CDS 50.0%
GTGACCCTTAAAGGTCCTAG+TGG - chr1.1:2940454-2940473 MS.gene24349:CDS 50.0%
TGATTCCCCTGAGCAGTTCA+CGG - chr1.1:2940768-2940787 MS.gene24349:intron 50.0%
! GCACCCCAATTAGCAGCTTT+TGG + chr1.1:2940874-2940893 None:intergenic 50.0%
!! CTCTTGGTTCTTTTGCCGGT+TGG + chr1.1:2940838-2940857 None:intergenic 50.0%
!! TGGTTCTTTTGCCGGTTGGT+AGG + chr1.1:2940834-2940853 None:intergenic 50.0%
!!! CTTTTGCCGGTTGGTAGGAA+GGG + chr1.1:2940829-2940848 None:intergenic 50.0%
!!! TCTTTTGCCGGTTGGTAGGA+AGG + chr1.1:2940830-2940849 None:intergenic 50.0%
CAGCCAGCCCGAATAGAAGT+GGG - chr1.1:2941866-2941885 MS.gene24349:CDS 55.0%
CAGCCCGAATAGAAGTGGGA+AGG - chr1.1:2941870-2941889 MS.gene24349:CDS 55.0%
CAGTGTCCCTTCCTACCAAC+CGG - chr1.1:2940820-2940839 MS.gene24349:intron 55.0%
CTTCCCACTTCTATTCGGGC+TGG + chr1.1:2941872-2941891 None:intergenic 55.0%
GCATCATCCGTGAACTGCTC+AGG + chr1.1:2940778-2940797 None:intergenic 55.0%
GGCCATGCTCAAACAGCACA+AGG - chr1.1:2940682-2940701 MS.gene24349:intron 55.0%
!! ATATCGGCCATGGCGGATTG+TGG - chr1.1:2941358-2941377 MS.gene24349:intron 55.0%
!! CCCCTTGTGCTGTTTGAGCA+TGG + chr1.1:2940687-2940706 None:intergenic 55.0%
GCAGCCAGCCCGAATAGAAG+TGG - chr1.1:2941865-2941884 MS.gene24349:CDS 60.0%
GTGGATATGGCGGCGCCTAT+GGG - chr1.1:2941446-2941465 MS.gene24349:intron 60.0%
TCCACCACCACAATCCGCCA+TGG + chr1.1:2941368-2941387 None:intergenic 60.0%
TGGATATGGCGGCGCCTATG+GGG - chr1.1:2941447-2941466 MS.gene24349:intron 60.0%
! GCGGCGCCTATGGGGATTTT+TGG - chr1.1:2941455-2941474 MS.gene24349:intron 60.0%
! GGGTGCGAGAGCACATGCTT+GGG - chr1.1:2940888-2940907 MS.gene24349:intron 60.0%
GGTGGATATGGCGGCGCCTA+TGG - chr1.1:2941445-2941464 MS.gene24349:intron 65.0%
! GGGGTGCGAGAGCACATGCT+TGG - chr1.1:2940887-2940906 MS.gene24349:intron 65.0%
! TGGCGGATGGCAGACCGTGA+CGG + chr1.1:2941485-2941504 None:intergenic 65.0%
!! ATTCGGGCTGGCTGCCTCTG+AGG + chr1.1:2941860-2941879 None:intergenic 65.0%
!! GCCATGGCGGATTGTGGTGG+TGG - chr1.1:2941364-2941383 MS.gene24349:intron 65.0%
!! TCGGCCATGGCGGATTGTGG+TGG - chr1.1:2941361-2941380 MS.gene24349:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 2940403 2942038 2940403 ID=MS.gene24349
chr1.1 mRNA 2940403 2942038 2940403 ID=MS.gene24349.t1;Parent=MS.gene24349
chr1.1 exon 2941507 2942038 2941507 ID=MS.gene24349.t1.exon1;Parent=MS.gene24349.t1
chr1.1 CDS 2941507 2942038 2941507 ID=cds.MS.gene24349.t1;Parent=MS.gene24349.t1
chr1.1 exon 2940403 2940578 2940403 ID=MS.gene24349.t1.exon2;Parent=MS.gene24349.t1
chr1.1 CDS 2940403 2940578 2940403 ID=cds.MS.gene24349.t1;Parent=MS.gene24349.t1
Gene Sequence

>MS.gene24349

GCACTTCCTAAAACATTTTCAGACAATTTAAATAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTACATGGAAGAATATAAGGCTGACAACTAGAGATGGCACTGTTTACTTCGTGGACGGTTGGCAACAATTCATGAACGATCACTCGTTGAAAGCTAATGATTTCCTTGTCTGTAAGTACAATGGTGAATCGCACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGCGAGAAAGAAGCTTCTTATTTTGTCGAAAAATGCGGCCATGCTCAAACAGCACAAGGGGGTAGCAATGCATCGCAAACAAACAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGCTGGTGATTCCCCTGAGCAGTTCACGGATGATGCAGTCCCTAAGACCGCAGCTATTCAGTGTCCCTTCCTACCAACCGGCAAAAGAACCAAGAGGAGAAGAAGATCACCAAAAGCTGCTAATTGGGGTGCGAGAGCACATGCTTGGGTGACTTGTAACAAGCAACACCCAGGTTAAAATATTTCTTTCTTTTCCATTAACTTTTACGATATTAAATGGAACCCAGTCAATACGAATATCTAGTGTGTATCTATGTTGACTATGATAAATTCTGATTTATATTCATATTGAATCACTAGCTAAACTTAAAGTAGCTAACCATTTTTTTTTTGGTTAACTTTGTATAACCAACCACTTTTCTTTTTTCATTTGATTTATGACTTGAATCATGTATTATTTTGATGTTCATACATGATGTATCGGCTTATAGTTTTGTTGTTACGTCACATGCTTTTACTTAAAAATGACATATCGGCCTAGTTCAAATAAATCAATTTTTCACTACCTCTATATATATTCCTCTCTCCCATGTGTGTTTCTCTCCCTATCTCTAGCTAACTTGCCAACTAAGCACTTTTATCTCGAGTGTTGTCAAATATCGGCCATGGCGGATTGTGGTGGTGGATTTTTTAACAACCGGCATGACCTATTTGTGAAGGATGACATAACCATGGTGTTTTGTGGTGGATATGGCGGCGCCTATGGGGATTTTTGGCTTTCCGTCACGGTCTGCCATCCGCCATCGATAATACTACTTCTCTTCATTTTGGCCTTTCCCTTAATGGCTATTAAACTGTCTCTCAGTCAAGTAATCTCTGGTAACCTTAATATCATCAACATAAACAAGAACTACAATTAGTTTTCCTCCTTGTGAATGTTTGAACTAAAGATTTTGATTTCCTTGACTTTTCTTATAGCCCAAGCACACCACTGCATTTGATTTCATTCTGGTTCTCAAAAATTTGTATTATAACTCATCTGATCTTCCCTAGCAAACTGATACTTGTCTAGGAAAAAGTATTTTGCATTCAAATCCAGATATTCATAACAGAGCTTATCCTTTTATTTGTAACTCATGATTGAACTGTTCAATTCCTCAGAGGCAGCCAGCCCGAATAGAAGTGGGAAGGTAGACGACCATTGTATTTTCAGCGGAGCTTCACTGTCAAAGTCAACAGCACTTGTTGAGGAAAAGATAGCCCAATCATTTTCCTCCTCATTTCCATATTTTGTTAAAATAATTAAAGCCTTCAATGTCAGTGGTTCTCGTACTATT
Protein sequence

>MS.gene24349.t1

ALPKTFSDNLNKKLPENVTLKGPSGVTWKNIRLTTRDGTVYFVDGWQQFMNDHSLKANDFLVCKYNGESHFEVLIFDGESFCEKEASYFVEKCGHAQTAQGGSNASQTNNSVEEVNTASNAGDSPEQFTDDAVPKTAAIQCPFLPTGKRTKRRRRSPKAANWGARAHAWVTCNKQHPEAASPNRSGKVDDHCIFSGASLSKSTALVEEKIAQSFSSSFPYFVKIIKAFNVSGSRTI