Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67090.t1 | RHN77374.1 | 89.6 | 240 | 20 | 2 | 1 | 236 | 41 | 279 | 5.60E-115 | 423.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67090.t1 | Q8RYD1 | 37.0 | 181 | 100 | 3 | 2 | 177 | 39 | 210 | 3.5e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67090.t1 | G7I4K5 | 89.6 | 240 | 20 | 2 | 1 | 236 | 41 | 279 | 4.0e-115 | 423.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene67090.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene67090 | 0.800616 | 1.33E-48 | -1.69E-46 |
| MS.gene050623 | MS.gene67090 | -0.807701 | 4.44E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene67090 | 0.800984 | 1.11E-48 | -1.69E-46 |
| MS.gene051245 | MS.gene67090 | 0.802634 | 5.11E-49 | -1.69E-46 |
| MS.gene051349 | MS.gene67090 | 0.807311 | 5.38E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene67090 | 0.818299 | 2.11E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene67090 | 0.826318 | 2.90E-54 | -1.69E-46 |
| MS.gene055441 | MS.gene67090 | 0.805802 | 1.12E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene67090 | 0.808233 | 3.42E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene67090 | 0.808388 | 3.17E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene67090 | 0.800591 | 1.34E-48 | -1.69E-46 |
| MS.gene057754 | MS.gene67090 | 0.821217 | 4.54E-53 | -1.69E-46 |
| MS.gene05795 | MS.gene67090 | 0.819789 | 9.66E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene67090 | 0.808552 | 2.93E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene67090 | 0.816845 | 4.48E-52 | -1.69E-46 |
| MS.gene058399 | MS.gene67090 | 0.837998 | 3.73E-57 | -1.69E-46 |
| MS.gene060297 | MS.gene67090 | 0.817258 | 3.62E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene67075 | MS.gene67090 | PPI |
| MS.gene24349 | MS.gene67090 | PPI |
| MS.gene67153 | MS.gene67090 | PPI |
| MS.gene67090 | MS.gene043977 | PPI |
| MS.gene67090 | MS.gene24349 | PPI |
| MS.gene67073 | MS.gene67090 | PPI |
| MS.gene24342 | MS.gene67090 | PPI |
| MS.gene24348 | MS.gene67090 | PPI |
| MS.gene043977 | MS.gene67090 | PPI |
| MS.gene27370 | MS.gene67090 | PPI |
| MS.gene67090 | MS.gene043976 | PPI |
| MS.gene67076 | MS.gene67090 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67090.t1 | MTR_1g021330 | 89.583 | 240 | 20 | 2 | 1 | 236 | 41 | 279 | 2.52e-154 | 434 |
| MS.gene67090.t1 | MTR_1g021440 | 65.385 | 260 | 66 | 4 | 1 | 236 | 37 | 296 | 3.56e-111 | 321 |
| MS.gene67090.t1 | MTR_1g021440 | 65.385 | 260 | 66 | 4 | 1 | 236 | 37 | 296 | 2.50e-109 | 320 |
| MS.gene67090.t1 | MTR_1g021440 | 62.745 | 255 | 63 | 4 | 1 | 236 | 37 | 278 | 5.78e-103 | 300 |
| MS.gene67090.t1 | MTR_1g021440 | 62.745 | 255 | 63 | 4 | 1 | 236 | 37 | 278 | 2.67e-101 | 299 |
| MS.gene67090.t1 | MTR_1g021400 | 62.083 | 240 | 68 | 6 | 1 | 233 | 45 | 268 | 3.31e-89 | 268 |
| MS.gene67090.t1 | MTR_1g021350 | 62.174 | 230 | 35 | 5 | 1 | 199 | 36 | 244 | 1.20e-86 | 261 |
| MS.gene67090.t1 | MTR_1g021410 | 62.241 | 241 | 67 | 7 | 1 | 233 | 37 | 261 | 9.10e-86 | 259 |
| MS.gene67090.t1 | MTR_1g021435 | 56.967 | 244 | 81 | 6 | 1 | 236 | 37 | 264 | 1.16e-79 | 244 |
| MS.gene67090.t1 | MTR_1g021380 | 57.438 | 242 | 68 | 6 | 1 | 233 | 36 | 251 | 4.15e-79 | 241 |
| MS.gene67090.t1 | MTR_1g021360 | 58.228 | 237 | 54 | 7 | 1 | 236 | 197 | 389 | 7.58e-79 | 245 |
| MS.gene67090.t1 | MTR_1g021360 | 79.070 | 129 | 27 | 0 | 1 | 129 | 40 | 168 | 1.72e-68 | 218 |
| MS.gene67090.t1 | MTR_1g021320 | 81.395 | 129 | 24 | 0 | 1 | 129 | 40 | 168 | 9.87e-69 | 226 |
| MS.gene67090.t1 | MTR_1g021320 | 58.685 | 213 | 70 | 4 | 1 | 195 | 197 | 409 | 4.74e-68 | 224 |
| MS.gene67090.t1 | MTR_1g021320 | 51.087 | 92 | 22 | 2 | 162 | 230 | 424 | 515 | 3.06e-13 | 68.9 |
| MS.gene67090.t1 | MTR_1g021290 | 70.229 | 131 | 34 | 2 | 1 | 130 | 170 | 296 | 1.77e-56 | 183 |
| MS.gene67090.t1 | MTR_1g021290 | 81.188 | 101 | 19 | 0 | 1 | 101 | 42 | 142 | 8.67e-55 | 179 |
| MS.gene67090.t1 | MTR_1g021500 | 45.089 | 224 | 72 | 5 | 1 | 191 | 41 | 246 | 2.22e-48 | 165 |
| MS.gene67090.t1 | MTR_1g021500 | 45.089 | 224 | 72 | 5 | 1 | 191 | 41 | 246 | 3.28e-48 | 165 |
| MS.gene67090.t1 | MTR_1g021270 | 34.677 | 248 | 135 | 7 | 2 | 233 | 31 | 267 | 7.44e-26 | 105 |
| MS.gene67090.t1 | MTR_7g050710 | 34.259 | 108 | 69 | 2 | 2 | 109 | 29 | 134 | 1.54e-11 | 63.2 |
| MS.gene67090.t1 | MTR_1g034240 | 41.333 | 75 | 44 | 0 | 2 | 76 | 23 | 97 | 1.63e-11 | 63.5 |
| MS.gene67090.t1 | MTR_7g050640 | 36.000 | 75 | 48 | 0 | 1 | 75 | 28 | 102 | 3.61e-11 | 58.9 |
| MS.gene67090.t1 | MTR_3g098790 | 36.000 | 75 | 48 | 0 | 2 | 76 | 29 | 103 | 7.03e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67090.t1 | AT4G33280 | 52.381 | 105 | 49 | 1 | 1 | 104 | 38 | 142 | 6.94e-32 | 119 |
| MS.gene67090.t1 | AT4G33280 | 55.208 | 96 | 42 | 1 | 1 | 95 | 38 | 133 | 2.93e-31 | 116 |
| MS.gene67090.t1 | AT4G33280 | 55.208 | 96 | 42 | 1 | 1 | 95 | 38 | 133 | 2.46e-30 | 116 |
| MS.gene67090.t1 | AT4G34400 | 40.000 | 85 | 51 | 0 | 1 | 85 | 30 | 114 | 1.85e-18 | 83.6 |
| MS.gene67090.t1 | AT4G34400 | 40.000 | 85 | 51 | 0 | 1 | 85 | 30 | 114 | 1.85e-18 | 83.6 |
| MS.gene67090.t1 | AT3G06220 | 27.273 | 110 | 72 | 2 | 2 | 111 | 25 | 126 | 1.20e-14 | 70.1 |
| MS.gene67090.t1 | AT3G18990 | 25.498 | 251 | 158 | 6 | 2 | 236 | 22 | 259 | 2.63e-13 | 68.6 |
| MS.gene67090.t1 | AT3G18990 | 25.498 | 251 | 158 | 6 | 2 | 236 | 22 | 259 | 3.14e-13 | 68.6 |
| MS.gene67090.t1 | AT5G60130 | 39.773 | 88 | 48 | 2 | 1 | 83 | 28 | 115 | 9.11e-13 | 66.2 |
| MS.gene67090.t1 | AT5G60130 | 39.773 | 88 | 48 | 2 | 1 | 83 | 2 | 89 | 1.68e-12 | 65.9 |
| MS.gene67090.t1 | AT5G60130 | 39.773 | 88 | 48 | 2 | 1 | 83 | 25 | 112 | 2.19e-12 | 65.9 |
| MS.gene67090.t1 | AT5G60130 | 39.773 | 88 | 48 | 2 | 1 | 83 | 28 | 115 | 2.27e-12 | 65.5 |
| MS.gene67090.t1 | AT5G60130 | 39.773 | 88 | 48 | 2 | 1 | 83 | 28 | 115 | 2.38e-12 | 65.9 |
| MS.gene67090.t1 | AT3G06160 | 31.868 | 91 | 61 | 1 | 1 | 91 | 39 | 128 | 3.23e-12 | 65.5 |
| MS.gene67090.t1 | AT3G06160 | 31.868 | 91 | 61 | 1 | 1 | 91 | 24 | 113 | 3.95e-12 | 65.1 |
| MS.gene67090.t1 | AT3G06160 | 31.868 | 91 | 61 | 1 | 1 | 91 | 24 | 113 | 3.95e-12 | 65.1 |
| MS.gene67090.t1 | AT3G06160 | 31.868 | 91 | 61 | 1 | 1 | 91 | 24 | 113 | 3.95e-12 | 65.1 |
| MS.gene67090.t1 | AT3G06160 | 31.868 | 91 | 61 | 1 | 1 | 91 | 83 | 172 | 4.55e-12 | 65.1 |
| MS.gene67090.t1 | AT3G18960 | 38.710 | 93 | 45 | 2 | 1 | 82 | 34 | 125 | 6.95e-12 | 62.8 |
| MS.gene67090.t1 | AT3G18960 | 38.710 | 93 | 45 | 2 | 1 | 82 | 34 | 125 | 8.95e-12 | 62.8 |
| MS.gene67090.t1 | AT4G01580 | 37.634 | 93 | 46 | 2 | 1 | 82 | 34 | 125 | 1.03e-11 | 62.4 |
| MS.gene67090.t1 | AT1G49475 | 45.312 | 64 | 35 | 0 | 13 | 76 | 60 | 123 | 2.43e-11 | 61.2 |
| MS.gene67090.t1 | AT3G18960 | 40.741 | 81 | 47 | 1 | 2 | 82 | 9 | 88 | 3.99e-11 | 60.5 |
Find 40 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAAAATGTGACACTTAA+AGG | 0.229513 | 1.2:+3388142 | MS.gene67090:CDS |
| TCCCAAGAATTAGCTTCTTT+TGG | 0.236174 | 1.2:-3388637 | None:intergenic |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.300231 | 1.2:+3388169 | MS.gene67090:CDS |
| CACCAAAAGAAGCTAATTCT+TGG | 0.330626 | 1.2:+3388635 | MS.gene67090:CDS |
| ACTTCTATAACAGGCTTCTC+AGG | 0.332466 | 1.2:-3388580 | None:intergenic |
| GTGCTTCGCCTGAGAAATTT+CGG | 0.346528 | 1.2:+3388470 | MS.gene67090:CDS |
| TTCTTGCTCGCTTATTAGTC+TGG | 0.350678 | 1.2:-3388612 | None:intergenic |
| GTTTCAAAAGTTAGAGCTAA+AGG | 0.409398 | 1.2:-3388514 | None:intergenic |
| TGTCGGTGGTTCATGTGTTA+TGG | 0.418901 | 1.2:+3389636 | MS.gene67090:CDS |
| GTGGAGTTGTGTGGAATATA+GGG | 0.421556 | 1.2:+3388170 | MS.gene67090:CDS |
| GAAGAAGTCAATACTCCTAA+TGG | 0.432859 | 1.2:+3388433 | MS.gene67090:CDS |
| CAATGGTGAATCACTCTTTG+AGG | 0.437853 | 1.2:+3388291 | MS.gene67090:CDS |
| ACAGGCGTAACTTCTATAAC+AGG | 0.455079 | 1.2:-3388589 | None:intergenic |
| CATTCAACAACACCACCATT+AGG | 0.459004 | 1.2:-3388448 | None:intergenic |
| ACCAAAAGAAGCTAATTCTT+GGG | 0.475425 | 1.2:+3388636 | MS.gene67090:CDS |
| GGCGCTTCCTAAAACATTCT+CGG | 0.481907 | 1.2:+3388099 | None:intergenic |
| TCAAGACTCCGAAATTTCTC+AGG | 0.493968 | 1.2:-3388478 | None:intergenic |
| TTCCTTGTCTTTAAGTACAA+TGG | 0.496096 | 1.2:+3388274 | MS.gene67090:CDS |
| GCTCGCTTATTAGTCTGGAC+AGG | 0.522128 | 1.2:-3388607 | None:intergenic |
| ATCAAAACGTTTCATGTCGG+TGG | 0.525440 | 1.2:+3389622 | MS.gene67090:CDS |
| CTGTTTACTTCGTGGACGGT+TGG | 0.535957 | 1.2:+3388212 | MS.gene67090:CDS |
| GACACTGTTTACTTCGTGGA+CGG | 0.546441 | 1.2:+3388208 | MS.gene67090:CDS |
| AGGAGTATTGACTTCTTCAA+CGG | 0.550848 | 1.2:-3388428 | None:intergenic |
| AATATAGGGCTGAATACTAA+AGG | 0.551393 | 1.2:+3388184 | MS.gene67090:CDS |
| CACCATTGTACTTAAAGACA+AGG | 0.554483 | 1.2:-3388276 | None:intergenic |
| CTTCTATAACAGGCTTCTCA+GGG | 0.559699 | 1.2:-3388579 | None:intergenic |
| AGGTGACACTGTTTACTTCG+TGG | 0.562517 | 1.2:+3388204 | MS.gene67090:CDS |
| ACTAAACAAGCGGGTAACAA+AGG | 0.576423 | 1.2:+3388388 | MS.gene67090:CDS |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1.2:-3388166 | None:intergenic |
| AAAGTTATCAAGAAGTGATG+AGG | 0.603703 | 1.2:+3389549 | MS.gene67090:CDS |
| GTGACACTTAAAGGTCCTAG+TGG | 0.610309 | 1.2:+3388151 | MS.gene67090:CDS |
| TTTAACAAAATATGGAACAG+AGG | 0.614655 | 1.2:-3389596 | None:intergenic |
| CAAGCTCATACTAAACAAGC+GGG | 0.619184 | 1.2:+3388379 | MS.gene67090:CDS |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1.2:+3388161 | MS.gene67090:CDS |
| ATAATCAAAACGTTTCATGT+CGG | 0.645430 | 1.2:+3389619 | MS.gene67090:CDS |
| GAAGTCAATACTCCTAATGG+TGG | 0.647991 | 1.2:+3388436 | MS.gene67090:CDS |
| ACAAGCTCATACTAAACAAG+CGG | 0.652222 | 1.2:+3388378 | MS.gene67090:CDS |
| GCGTATAACAAGGAACACTC+AGG | 0.659512 | 1.2:+3388664 | MS.gene67090:CDS |
| TTGGGAGAGAGCGTATAACA+AGG | 0.674690 | 1.2:+3388654 | MS.gene67090:CDS |
| TTCTATAACAGGCTTCTCAG+GGG | 0.700208 | 1.2:-3388578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTATTTTAACAAAATA+TGG | - | chr1.2:3389607-3389626 | None:intergenic | 10.0% |
| !! | ATTCATATGGTAAAAGTTAA+TGG | - | chr1.2:3388710-3388729 | None:intergenic | 20.0% |
| !! | TTCATATGGTAAAAGTTAAT+GGG | - | chr1.2:3388709-3388728 | None:intergenic | 20.0% |
| !!! | AATCATGAGTTTTAAGAAAA+AGG | - | chr1.2:3389495-3389514 | None:intergenic | 20.0% |
| !!! | GATTTTTGTTTTTACTGATA+GGG | + | chr1.2:3389040-3389059 | MS.gene67090:intron | 20.0% |
| !!! | TTTGAGGTTTTAATCTTTAA+TGG | + | chr1.2:3388307-3388326 | MS.gene67090:CDS | 20.0% |
| ! | AAATCTAGTGTGTATCTATA+TGG | + | chr1.2:3388946-3388965 | MS.gene67090:intron | 25.0% |
| ! | AATAAGAAAAGAGAATGATG+AGG | + | chr1.2:3389139-3389158 | MS.gene67090:intron | 25.0% |
| ! | ATAATCAAAACGTTTCATGT+CGG | + | chr1.2:3389619-3389638 | MS.gene67090:CDS | 25.0% |
| ! | TAGATGAGTTAGAATTCATA+TGG | - | chr1.2:3388723-3388742 | None:intergenic | 25.0% |
| ! | TTTAACAAAATATGGAACAG+AGG | - | chr1.2:3389599-3389618 | None:intergenic | 25.0% |
| !! | AAAATTCATGATAGTGAATC+AGG | - | chr1.2:3388992-3389011 | None:intergenic | 25.0% |
| !! | AATGGAAATACTTTTAATGC+TGG | + | chr1.2:3388541-3388560 | MS.gene67090:CDS | 25.0% |
| !! | ATCTTGATTTTGTACTAAAC+TGG | + | chr1.2:3388908-3388927 | MS.gene67090:intron | 25.0% |
| !! | CATCTAGTAACTATAACTTT+TGG | + | chr1.2:3388737-3388756 | MS.gene67090:intron | 25.0% |
| !!! | CGATTTTTGTTTTTACTGAT+AGG | + | chr1.2:3389039-3389058 | MS.gene67090:intron | 25.0% |
| !!! | CTAACTTTTGAAACTACTAA+TGG | + | chr1.2:3388523-3388542 | MS.gene67090:CDS | 25.0% |
| !!! | TCTTATTTTGTTCTAGAATG+TGG | + | chr1.2:3388355-3388374 | MS.gene67090:CDS | 25.0% |
| !!! | TGAGTTTTAAGAAAAAGGAT+AGG | - | chr1.2:3389490-3389509 | None:intergenic | 25.0% |
| AAAGTTATCAAGAAGTGATG+AGG | + | chr1.2:3389549-3389568 | MS.gene67090:CDS | 30.0% | |
| AATATAGGGCTGAATACTAA+AGG | + | chr1.2:3388184-3388203 | MS.gene67090:CDS | 30.0% | |
| ACCAAAAGAAGCTAATTCTT+GGG | + | chr1.2:3388636-3388655 | MS.gene67090:CDS | 30.0% | |
| CCAGAAGTAAGAAATTAAAG+AGG | - | chr1.2:3389379-3389398 | None:intergenic | 30.0% | |
| GATAATCATAAACCATGCTT+AGG | - | chr1.2:3388862-3388881 | None:intergenic | 30.0% | |
| GTTAGAATTAGTTGGTTAGT+TGG | + | chr1.2:3389177-3389196 | MS.gene67090:intron | 30.0% | |
| GTTTCAAAAGTTAGAGCTAA+AGG | - | chr1.2:3388517-3388536 | None:intergenic | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+TGG | + | chr1.2:3388274-3388293 | MS.gene67090:CDS | 30.0% | |
| ! | ACTATAACTTTTGGATGTCA+TGG | + | chr1.2:3388746-3388765 | MS.gene67090:intron | 30.0% |
| ! | ATATTGTCCGAGAATGTTTT+AGG | - | chr1.2:3388109-3388128 | None:intergenic | 30.0% |
| ! | ATTGTTTGATTTCTGTGTAG+AGG | + | chr1.2:3389286-3389305 | MS.gene67090:intron | 30.0% |
| ! | CCTCTTTAATTTCTTACTTC+TGG | + | chr1.2:3389376-3389395 | MS.gene67090:intron | 30.0% |
| !! | GGATGAATCATTGTTTTGTT+TGG | + | chr1.2:3389256-3389275 | MS.gene67090:intron | 30.0% |
| !!! | ACTAGATTTTCGTATCGATT+GGG | - | chr1.2:3388935-3388954 | None:intergenic | 30.0% |
| AAGAAAAGAGAATGATGAGG+TGG | + | chr1.2:3389142-3389161 | MS.gene67090:intron | 35.0% | |
| AAGGTAATAAGCCCAAAGTA+TGG | + | chr1.2:3389098-3389117 | MS.gene67090:intron | 35.0% | |
| AATTGTTCAATTCCACACAG+AGG | + | chr1.2:3389516-3389535 | MS.gene67090:intron | 35.0% | |
| ACAAGCTCATACTAAACAAG+CGG | + | chr1.2:3388378-3388397 | MS.gene67090:CDS | 35.0% | |
| ATGCTTAGGACCATTAAAGA+GGG | - | chr1.2:3388848-3388867 | None:intergenic | 35.0% | |
| CACATTTCATTTGCGATTCT+CGG | + | chr1.2:3389350-3389369 | MS.gene67090:intron | 35.0% | |
| CACCAAAAGAAGCTAATTCT+TGG | + | chr1.2:3388635-3388654 | MS.gene67090:CDS | 35.0% | |
| CACCATTGTACTTAAAGACA+AGG | - | chr1.2:3388279-3388298 | None:intergenic | 35.0% | |
| CCAGAAAATGTGACACTTAA+AGG | + | chr1.2:3388142-3388161 | MS.gene67090:CDS | 35.0% | |
| GAAGAAGTCAATACTCCTAA+TGG | + | chr1.2:3388433-3388452 | MS.gene67090:CDS | 35.0% | |
| GAGGGAAAGTTAGAATTAGT+TGG | + | chr1.2:3389169-3389188 | MS.gene67090:intron | 35.0% | |
| GCATAAACTCTCCATACTTT+GGG | - | chr1.2:3389112-3389131 | None:intergenic | 35.0% | |
| TAGCAAACTGATACTTGTCA+TGG | + | chr1.2:3389423-3389442 | MS.gene67090:intron | 35.0% | |
| TTAAGAAAAAGGATAGGCTC+TGG | - | chr1.2:3389484-3389503 | None:intergenic | 35.0% | |
| TTATCAGTATCTAGCGATAC+AGG | + | chr1.2:3388877-3388896 | MS.gene67090:intron | 35.0% | |
| ! | ACTAGTTTGCACAATGAACA+TGG | - | chr1.2:3388819-3388838 | None:intergenic | 35.0% |
| ! | ATGACAAGTATCAGTTTGCT+AGG | - | chr1.2:3389424-3389443 | None:intergenic | 35.0% |
| ! | CCTTTAAGTGTCACATTTTC+TGG | - | chr1.2:3388145-3388164 | None:intergenic | 35.0% |
| ! | TAGTTGGTTAGTTGGTTAGT+TGG | + | chr1.2:3389185-3389204 | MS.gene67090:intron | 35.0% |
| ! | TAGTTTTTCCCCCTCTTTAA+TGG | + | chr1.2:3388835-3388854 | MS.gene67090:intron | 35.0% |
| !! | AGGAGTATTGACTTCTTCAA+CGG | - | chr1.2:3388431-3388450 | None:intergenic | 35.0% |
| !! | CACTAGATTTTCGTATCGAT+TGG | - | chr1.2:3388936-3388955 | None:intergenic | 35.0% |
| !! | TAGTTGGTTAGTTGGTGATT+CGG | + | chr1.2:3389193-3389212 | MS.gene67090:intron | 35.0% |
| !! | TCCCAAGAATTAGCTTCTTT+TGG | - | chr1.2:3388640-3388659 | None:intergenic | 35.0% |
| !! | TGACAAGTATCAGTTTGCTA+GGG | - | chr1.2:3389423-3389442 | None:intergenic | 35.0% |
| AAGTATGGAGAGTTTATGCG+AGG | + | chr1.2:3389113-3389132 | MS.gene67090:intron | 40.0% | |
| ACAGGCGTAACTTCTATAAC+AGG | - | chr1.2:3388592-3388611 | None:intergenic | 40.0% | |
| ACTAAACAAGCGGGTAACAA+AGG | + | chr1.2:3388388-3388407 | MS.gene67090:CDS | 40.0% | |
| ACTTCTATAACAGGCTTCTC+AGG | - | chr1.2:3388583-3388602 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | + | chr1.2:3388169-3388188 | MS.gene67090:CDS | 40.0% | |
| ATATTCCACACAACTCCACT+AGG | - | chr1.2:3388169-3388188 | None:intergenic | 40.0% | |
| ATCAAAACGTTTCATGTCGG+TGG | + | chr1.2:3389622-3389641 | MS.gene67090:CDS | 40.0% | |
| CAAGCTCATACTAAACAAGC+GGG | + | chr1.2:3388379-3388398 | MS.gene67090:CDS | 40.0% | |
| CAATGGTGAATCACTCTTTG+AGG | + | chr1.2:3388291-3388310 | MS.gene67090:CDS | 40.0% | |
| CATGCTTAGGACCATTAAAG+AGG | - | chr1.2:3388849-3388868 | None:intergenic | 40.0% | |
| CATTCAACAACACCACCATT+AGG | - | chr1.2:3388451-3388470 | None:intergenic | 40.0% | |
| CGCATAAACTCTCCATACTT+TGG | - | chr1.2:3389113-3389132 | None:intergenic | 40.0% | |
| CTCTTTAATGGTCCTAAGCA+TGG | + | chr1.2:3388847-3388866 | MS.gene67090:intron | 40.0% | |
| CTTAACCTTAGCAGATGACA+TGG | + | chr1.2:3389064-3389083 | MS.gene67090:intron | 40.0% | |
| CTTCTATAACAGGCTTCTCA+GGG | - | chr1.2:3388582-3388601 | None:intergenic | 40.0% | |
| GAAGTCAATACTCCTAATGG+TGG | + | chr1.2:3388436-3388455 | MS.gene67090:CDS | 40.0% | |
| GCTTATTACCTTTGTCACTG+AGG | - | chr1.2:3389090-3389109 | None:intergenic | 40.0% | |
| GTGGAGTTGTGTGGAATATA+GGG | + | chr1.2:3388170-3388189 | MS.gene67090:CDS | 40.0% | |
| TCAAGACTCCGAAATTTCTC+AGG | - | chr1.2:3388481-3388500 | None:intergenic | 40.0% | |
| TGCTTAGGACCATTAAAGAG+GGG | - | chr1.2:3388847-3388866 | None:intergenic | 40.0% | |
| TGTGTAGAGGATTGCTCTTT+GGG | + | chr1.2:3389299-3389318 | MS.gene67090:intron | 40.0% | |
| TTCTATAACAGGCTTCTCAG+GGG | - | chr1.2:3388581-3388600 | None:intergenic | 40.0% | |
| TTCTTGCTCGCTTATTAGTC+TGG | - | chr1.2:3388615-3388634 | None:intergenic | 40.0% | |
| !! | GACAAGTATCAGTTTGCTAG+GGG | - | chr1.2:3389422-3389441 | None:intergenic | 40.0% |
| !! | GTGATTCGGTTATATGAGGT+GGG | + | chr1.2:3389207-3389226 | MS.gene67090:intron | 40.0% |
| !! | GTTGGTGATTCGGTTATATG+AGG | + | chr1.2:3389203-3389222 | MS.gene67090:intron | 40.0% |
| AAGAGAATGATGAGGTGGCA+AGG | + | chr1.2:3389147-3389166 | MS.gene67090:intron | 45.0% | |
| AGGATTGCTCTTTGGGTAGT+AGG | + | chr1.2:3389306-3389325 | MS.gene67090:intron | 45.0% | |
| AGGTGACACTGTTTACTTCG+TGG | + | chr1.2:3388204-3388223 | MS.gene67090:CDS | 45.0% | |
| CTGTGTAGAGGATTGCTCTT+TGG | + | chr1.2:3389298-3389317 | MS.gene67090:intron | 45.0% | |
| GACACTGTTTACTTCGTGGA+CGG | + | chr1.2:3388208-3388227 | MS.gene67090:CDS | 45.0% | |
| GCGTATAACAAGGAACACTC+AGG | + | chr1.2:3388664-3388683 | MS.gene67090:CDS | 45.0% | |
| GCTTAGGACCATTAAAGAGG+GGG | - | chr1.2:3388846-3388865 | None:intergenic | 45.0% | |
| GGATTGCTCTTTGGGTAGTA+GGG | + | chr1.2:3389307-3389326 | MS.gene67090:intron | 45.0% | |
| GTGACACTTAAAGGTCCTAG+TGG | + | chr1.2:3388151-3388170 | MS.gene67090:CDS | 45.0% | |
| GTGCTTCGCCTGAGAAATTT+CGG | + | chr1.2:3388470-3388489 | MS.gene67090:CDS | 45.0% | |
| GTTATATGAGGTGGGAGTTG+TGG | + | chr1.2:3389215-3389234 | MS.gene67090:intron | 45.0% | |
| TGTCGGTGGTTCATGTGTTA+TGG | + | chr1.2:3389636-3389655 | MS.gene67090:CDS | 45.0% | |
| ! | TTGGGAGAGAGCGTATAACA+AGG | + | chr1.2:3388654-3388673 | MS.gene67090:CDS | 45.0% |
| !! | GGTGATTCGGTTATATGAGG+TGG | + | chr1.2:3389206-3389225 | MS.gene67090:intron | 45.0% |
| AAGGTCCTAGTGGAGTTGTG+TGG | + | chr1.2:3388161-3388180 | MS.gene67090:CDS | 50.0% | |
| AGAATGATGAGGTGGCAAGG+AGG | + | chr1.2:3389150-3389169 | MS.gene67090:intron | 50.0% | |
| CTGTTTACTTCGTGGACGGT+TGG | + | chr1.2:3388212-3388231 | MS.gene67090:CDS | 50.0% | |
| GAATGATGAGGTGGCAAGGA+GGG | + | chr1.2:3389151-3389170 | MS.gene67090:intron | 50.0% | |
| TGACATGGCCTCAGTGACAA+AGG | + | chr1.2:3389079-3389098 | MS.gene67090:intron | 50.0% | |
| TGAGGCCATGTCATCTGCTA+AGG | - | chr1.2:3389072-3389091 | None:intergenic | 50.0% | |
| ! | GCTCGCTTATTAGTCTGGAC+AGG | - | chr1.2:3388610-3388629 | None:intergenic | 50.0% |
| !! | TGGAGAGATGGAGGGTATCA+TGG | + | chr1.2:3389235-3389254 | MS.gene67090:intron | 50.0% |
| AGGTGGGAGTTGTGGAGAGA+TGG | + | chr1.2:3389223-3389242 | MS.gene67090:intron | 55.0% | |
| GGGAGTTGTGGAGAGATGGA+GGG | + | chr1.2:3389227-3389246 | MS.gene67090:intron | 55.0% | |
| TGGGAGTTGTGGAGAGATGG+AGG | + | chr1.2:3389226-3389245 | MS.gene67090:intron | 55.0% | |
| TTGACAGTGCTGCCTCTGTG+TGG | - | chr1.2:3389531-3389550 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 3388100 | 3389657 | 3388100 | ID=MS.gene67090 |
| chr1.2 | mRNA | 3388100 | 3389657 | 3388100 | ID=MS.gene67090.t1;Parent=MS.gene67090 |
| chr1.2 | exon | 3388100 | 3388685 | 3388100 | ID=MS.gene67090.t1.exon1;Parent=MS.gene67090.t1 |
| chr1.2 | CDS | 3388100 | 3388685 | 3388100 | ID=cds.MS.gene67090.t1;Parent=MS.gene67090.t1 |
| chr1.2 | exon | 3389536 | 3389657 | 3389536 | ID=MS.gene67090.t1.exon2;Parent=MS.gene67090.t1 |
| chr1.2 | CDS | 3389536 | 3389657 | 3389536 | ID=cds.MS.gene67090.t1;Parent=MS.gene67090.t1 |
| Gene Sequence |
| Protein sequence |
