AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67076

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67076.t1 MTR_1g021290 93.258 178 10 2 1 177 170 346 7.47e-112 325
MS.gene67076.t1 MTR_1g021290 72.549 102 27 1 1 102 42 142 1.05e-45 155
MS.gene67076.t1 MTR_1g021320 50.307 326 71 4 1 236 197 521 2.44e-89 281
MS.gene67076.t1 MTR_1g021320 70.248 121 35 1 1 121 40 159 1.44e-49 173
MS.gene67076.t1 MTR_1g021435 59.350 246 72 4 1 236 37 264 2.62e-86 261
MS.gene67076.t1 MTR_1g021440 51.079 278 76 5 1 236 37 296 2.40e-80 243
MS.gene67076.t1 MTR_1g021400 56.972 251 69 6 1 236 45 271 3.23e-79 242
MS.gene67076.t1 MTR_1g021440 51.079 278 76 5 1 236 37 296 1.05e-78 242
MS.gene67076.t1 MTR_1g021410 55.020 249 78 5 1 236 37 264 1.84e-76 235
MS.gene67076.t1 MTR_1g021440 51.128 266 76 5 1 236 37 278 5.68e-76 231
MS.gene67076.t1 MTR_1g021440 51.128 266 76 5 1 236 37 278 3.11e-74 230
MS.gene67076.t1 MTR_1g021330 53.696 257 74 8 1 233 41 276 4.61e-73 227
MS.gene67076.t1 MTR_1g021360 55.274 237 61 6 1 236 197 389 4.99e-71 224
MS.gene67076.t1 MTR_1g021360 71.901 121 33 1 1 121 40 159 1.89e-51 174
MS.gene67076.t1 MTR_1g021380 53.725 255 63 8 1 236 36 254 8.21e-71 220
MS.gene67076.t1 MTR_1g021350 53.140 207 67 6 1 178 36 241 2.95e-57 185
MS.gene67076.t1 MTR_1g021270 37.959 245 137 6 2 236 31 270 4.06e-36 134
MS.gene67076.t1 MTR_1g021500 39.676 247 71 9 1 190 41 266 1.17e-35 131
MS.gene67076.t1 MTR_1g021500 39.676 247 71 9 1 190 41 266 1.44e-35 132
MS.gene67076.t1 MTR_1g021295 94.915 59 3 0 178 236 73 131 1.28e-30 113
MS.gene67076.t1 MTR_7g050640 38.961 77 46 1 1 77 28 103 1.70e-12 62.8
MS.gene67076.t1 MTR_7g050710 36.782 87 53 2 2 88 29 113 4.57e-12 64.7
MS.gene67076.t1 MTR_7g050580 39.474 76 45 1 2 77 29 103 5.75e-12 64.7
MS.gene67076.t1 MTR_7g050720 30.088 113 75 2 2 114 26 134 1.31e-11 63.5
MS.gene67076.t1 MTR_7g050590 36.250 80 50 1 2 81 2 80 2.92e-11 62.4
MS.gene67076.t1 MTR_3g098790 37.662 77 47 1 1 77 28 103 4.81e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67076.t1 AT4G33280 50.980 102 48 2 1 101 38 138 1.33e-28 109
MS.gene67076.t1 AT4G33280 44.628 121 64 3 1 119 38 157 3.57e-28 109
MS.gene67076.t1 AT4G33280 50.980 102 48 2 1 101 38 138 5.64e-28 110
MS.gene67076.t1 AT4G34400 35.714 84 53 1 1 84 30 112 8.46e-13 67.4
MS.gene67076.t1 AT4G34400 35.714 84 53 1 1 84 30 112 8.46e-13 67.4

Find 51 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGAAAATTTGACCCTTAA+AGG 0.168592 1.2:-3461042 MS.gene67076:CDS
TAACTCCACTAGGACCTTTA+AGG 0.191352 1.2:+3461028 None:intergenic
GATCACCAAAAGCTGCTAAT+TGG 0.248794 1.2:-3460621 MS.gene67076:CDS
TCTACCTTCCCACTTCTATT+CGG 0.257101 1.2:+3459613 None:intergenic
CACTGAATAGCTGCGGTCTT+AGG 0.262227 1.2:+3460685 None:intergenic
ATCACCAAAAGCTGCTAATT+GGG 0.331816 1.2:-3460620 MS.gene67076:CDS
GCACCCCAATTAGCAGCTTT+TGG 0.336856 1.2:+3460616 None:intergenic
GAGTTACATGGAAGAATATA+AGG 0.351517 1.2:-3461011 MS.gene67076:CDS
TGGTGATCTTCTTCTCCTCT+TGG 0.352191 1.2:+3460636 None:intergenic
CTACCTTCCCACTTCTATTC+GGG 0.356067 1.2:+3459614 None:intergenic
GCATCATCCGTGAACTGCTC+AGG 0.396249 1.2:+3460712 None:intergenic
TTTAACAAAATATGGAAATG+AGG 0.449590 1.2:+3459510 None:intergenic
ACTGAATAGCTGCGGTCTTA+GGG 0.455599 1.2:+3460686 None:intergenic
GTCAATACTGCTTCTAATGC+TGG 0.468501 1.2:-3460742 MS.gene67076:CDS
CTTCCCACTTCTATTCGGGC+TGG 0.473485 1.2:+3459618 None:intergenic
CAATGGTGAATCACACTTTG+AGG 0.476504 1.2:-3460890 MS.gene67076:CDS
GAAATGAGGAGGAAAATGAT+TGG 0.481463 1.2:+3459524 None:intergenic
CAGTGTCCCTTCCTACCAAC+CGG 0.487408 1.2:-3460667 MS.gene67076:CDS
CATCATCCGTGAACTGCTCA+GGG 0.491192 1.2:+3460713 None:intergenic
ACGAGAACCACTGACATTGA+AGG 0.493660 1.2:+3459477 None:intergenic
AACTCCACTAGGACCTTTAA+GGG 0.495173 1.2:+3461029 None:intergenic
CCCCTTGTGCTGTTTGAGCA+TGG 0.505067 1.2:+3460803 None:intergenic
GGGTGCGAGAGCACATGCTT+GGG 0.514835 1.2:-3460599 MS.gene67076:CDS
CTGTTTACTTCGTGGACGGT+TGG 0.525501 1.2:-3460969 MS.gene67076:CDS
TGATTCCCCTGAGCAGTTCA+CGG 0.528517 1.2:-3460719 MS.gene67076:CDS
AAATGAGGAGGAAAATGATT+GGG 0.529211 1.2:+3459525 None:intergenic
GGCACTGTTTACTTCGTGGA+CGG 0.546441 1.2:-3460973 MS.gene67076:CDS
CACCATTGTACTTACAGACA+AGG 0.550322 1.2:+3460905 None:intergenic
GGGGTGCGAGAGCACATGCT+TGG 0.551774 1.2:-3460600 MS.gene67076:CDS
GGCCATGCTCAAACAGCACA+AGG 0.557535 1.2:-3460805 MS.gene67076:CDS
AAGGTCCTAGTGGAGTTACA+TGG 0.559188 1.2:-3461023 MS.gene67076:CDS
CCATGCTCAAACAGCACAAG+GGG 0.563471 1.2:-3460803 MS.gene67076:CDS
AGATGGCACTGTTTACTTCG+TGG 0.564148 1.2:-3460977 MS.gene67076:CDS
GCAGCCAGCCCGAATAGAAG+TGG 0.568438 1.2:-3459622 MS.gene67076:CDS
AACAAAATATGGAAATGAGG+AGG 0.576763 1.2:+3459513 None:intergenic
ATTAAAGCCTTCAATGTCAG+TGG 0.584287 1.2:-3459484 MS.gene67076:CDS
TTGACCCTTAAAGGTCCTAG+TGG 0.593892 1.2:-3461033 MS.gene67076:CDS
GCCATGCTCAAACAGCACAA+GGG 0.608681 1.2:-3460804 MS.gene67076:CDS
TCACCAAAAGCTGCTAATTG+GGG 0.618986 1.2:-3460619 MS.gene67076:CDS
ATAAGGCTGACAACTAGAGA+TGG 0.621631 1.2:-3460994 MS.gene67076:CDS
CAGCCAGCCCGAATAGAAGT+GGG 0.622825 1.2:-3459621 MS.gene67076:CDS
TTCTTCCATGTAACTCCACT+AGG 0.623495 1.2:+3461018 None:intergenic
AAAGTCAACAGCACTTGTTG+AGG 0.643971 1.2:-3459557 MS.gene67076:CDS
CAGCCCGAATAGAAGTGGGA+AGG 0.644571 1.2:-3459617 MS.gene67076:CDS
TTCCTTGTCTGTAAGTACAA+TGG 0.651999 1.2:-3460907 MS.gene67076:CDS
CAACCGGCAAAAGAACCAAG+AGG 0.662281 1.2:-3460651 MS.gene67076:CDS
AAGCTCCGCTGAAAATACAA+TGG 0.674487 1.2:+3459587 None:intergenic
ACTTGTAACAAGCAACACCC+AGG 0.683080 1.2:-3460574 MS.gene67076:intron
GAAGGGACACTGAATAGCTG+CGG 0.686057 1.2:+3460678 None:intergenic
ATCATCCGTGAACTGCTCAG+GGG 0.723242 1.2:+3460714 None:intergenic
CATGCTCAAACAGCACAAGG+GGG 0.765396 1.2:-3460802 MS.gene67076:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTAACCAAAAAAAAAA+TGG + chr1.2:3460152-3460171 None:intergenic 15.0%
!! TTTAATATCGTAAAAGTTAA+TGG + chr1.2:3460027-3460046 None:intergenic 15.0%
!! TTTACTTAAAAATGACATAT+CGG - chr1.2:3460283-3460302 MS.gene67076:intron 15.0%
!!! AAAATTGATTTATTTGAACT+AGG + chr1.2:3460309-3460328 None:intergenic 15.0%
!!! TTAACTTTTACGATATTAAA+TGG - chr1.2:3460027-3460046 MS.gene67076:intron 15.0%
!! AATCATGAGTTACAAATAAA+AGG + chr1.2:3460892-3460911 None:intergenic 20.0%
!! ATCAAATGAAAAAAGAAAAG+TGG + chr1.2:3460185-3460204 None:intergenic 20.0%
!! TTTAACAAAATATGGAAATG+AGG + chr1.2:3461048-3461067 None:intergenic 20.0%
!!! AAATTGTCTGAAAATGTTTT+AGG + chr1.2:3459480-3459499 None:intergenic 20.0%
!!! AAGAAAGAAATATTTTAACC+TGG + chr1.2:3460002-3460021 None:intergenic 20.0%
!!! AGAAAGAAATATTTTAACCT+GGG + chr1.2:3460001-3460020 None:intergenic 20.0%
!!! TGTTTATGTTGATGATATTA+AGG + chr1.2:3460656-3460675 None:intergenic 20.0%
! AATGAAAAAAGAAAAGTGGT+TGG + chr1.2:3460181-3460200 None:intergenic 25.0%
!! AATACTACTTCTCTTCATTT+TGG - chr1.2:3460578-3460597 MS.gene67076:CDS 25.0%
!!! TCTTATTTTGTCGAAAAATG+CGG - chr1.2:3459729-3459748 MS.gene67076:intron 25.0%
!!! TTTGAGGTTTTAATCTTTGA+TGG - chr1.2:3459681-3459700 MS.gene67076:intron 25.0%
AAATGAGGAGGAAAATGATT+GGG + chr1.2:3461033-3461052 None:intergenic 30.0%
AACAAAATATGGAAATGAGG+AGG + chr1.2:3461045-3461064 None:intergenic 30.0%
AAGAGAAGTAGTATTATCGA+TGG + chr1.2:3460573-3460592 None:intergenic 30.0%
AGACAGTTTAATAGCCATTA+AGG + chr1.2:3460610-3460629 None:intergenic 30.0%
GACAGTTTAATAGCCATTAA+GGG + chr1.2:3460609-3460628 None:intergenic 30.0%
GAGTTACATGGAAGAATATA+AGG - chr1.2:3459544-3459563 MS.gene67076:CDS 30.0%
GATGTTCATACATGATGTAT+CGG - chr1.2:3460231-3460250 MS.gene67076:intron 30.0%
TAAGCTCTGTTATGAATATC+TGG + chr1.2:3460868-3460887 None:intergenic 30.0%
TTATGTCATCCTTCACAAAT+AGG + chr1.2:3460479-3460498 None:intergenic 30.0%
TTTAATAGCCATTAAGGGAA+AGG + chr1.2:3460604-3460623 None:intergenic 30.0%
! CTTTAGTTCAAACATTCACA+AGG + chr1.2:3460700-3460719 None:intergenic 30.0%
!! ACTAGATATTCGTATTGACT+GGG + chr1.2:3460055-3460074 None:intergenic 30.0%
!!! GCAGCTAACCATTTTTTTTT+TGG - chr1.2:3460141-3460160 MS.gene67076:intron 30.0%
AGAAGTAGTATTATCGATGG+CGG + chr1.2:3460570-3460589 None:intergenic 35.0%
ATCACCAAAAGCTGCTAATT+GGG - chr1.2:3459935-3459954 MS.gene67076:intron 35.0%
ATTAAAGCCTTCAATGTCAG+TGG - chr1.2:3461071-3461090 MS.gene67076:CDS 35.0%
CAGAATGAAATCAAATGCAG+TGG + chr1.2:3460761-3460780 None:intergenic 35.0%
CCAGAAAATTTGACCCTTAA+AGG - chr1.2:3459513-3459532 MS.gene67076:CDS 35.0%
GAAATGAGGAGGAAAATGAT+TGG + chr1.2:3461034-3461053 None:intergenic 35.0%
GGAGAGAGGAATATATATAG+AGG + chr1.2:3460338-3460357 None:intergenic 35.0%
TAGCAAACTGATACTTGTCT+AGG - chr1.2:3460820-3460839 MS.gene67076:CDS 35.0%
TAGTTCAAACATTCACAAGG+AGG + chr1.2:3460697-3460716 None:intergenic 35.0%
TTCCTTGTCTGTAAGTACAA+TGG - chr1.2:3459648-3459667 MS.gene67076:intron 35.0%
TTGGGCTATAAGAAAAGTCA+AGG + chr1.2:3460733-3460752 None:intergenic 35.0%
! CACTAGATATTCGTATTGAC+TGG + chr1.2:3460056-3460075 None:intergenic 35.0%
! CACTGCATTTGATTTCATTC+TGG - chr1.2:3460759-3460778 MS.gene67076:CDS 35.0%
! TAGACAAGTATCAGTTTGCT+AGG + chr1.2:3460821-3460840 None:intergenic 35.0%
! TCTCGAGTGTTGTCAAATAT+CGG - chr1.2:3460410-3460429 MS.gene67076:intron 35.0%
!! AGACAAGTATCAGTTTGCTA+GGG + chr1.2:3460820-3460839 None:intergenic 35.0%
!! CCTTTAAGGGTCAAATTTTC+TGG + chr1.2:3459516-3459535 None:intergenic 35.0%
!! TCGAGATAAAAGTGCTTAGT+TGG + chr1.2:3460396-3460415 None:intergenic 35.0%
!!! GTGGTGGATTTTTTAACAAC+CGG - chr1.2:3460448-3460467 MS.gene67076:intron 35.0%
AACTCCACTAGGACCTTTAA+GGG + chr1.2:3459529-3459548 None:intergenic 40.0%
AAGCTCCGCTGAAAATACAA+TGG + chr1.2:3460971-3460990 None:intergenic 40.0%
ATAAGGCTGACAACTAGAGA+TGG - chr1.2:3459561-3459580 MS.gene67076:CDS 40.0%
ATAGGGAGAGAAACACACAT+GGG + chr1.2:3460359-3460378 None:intergenic 40.0%
ATATCCACCACAAAACACCA+TGG + chr1.2:3460502-3460521 None:intergenic 40.0%
CAATGGTGAATCACACTTTG+AGG - chr1.2:3459665-3459684 MS.gene67076:intron 40.0%
CACCATTGTACTTACAGACA+AGG + chr1.2:3459653-3459672 None:intergenic 40.0%
GATCACCAAAAGCTGCTAAT+TGG - chr1.2:3459934-3459953 MS.gene67076:intron 40.0%
GTCAATACTGCTTCTAATGC+TGG - chr1.2:3459813-3459832 MS.gene67076:intron 40.0%
TAACTCCACTAGGACCTTTA+AGG + chr1.2:3459530-3459549 None:intergenic 40.0%
TCACCAAAAGCTGCTAATTG+GGG - chr1.2:3459936-3459955 MS.gene67076:intron 40.0%
TCTACCTTCCCACTTCTATT+CGG + chr1.2:3460945-3460964 None:intergenic 40.0%
TCTCTCAGTCAAGTAATCTC+TGG - chr1.2:3460627-3460646 MS.gene67076:CDS 40.0%
TGAACTGTTCAATTCCTCAG+AGG - chr1.2:3460911-3460930 MS.gene67076:CDS 40.0%
TGGCAAGTTAGCTAGAGATA+GGG + chr1.2:3460376-3460395 None:intergenic 40.0%
TGTGAAGGATGACATAACCA+TGG - chr1.2:3460482-3460501 MS.gene67076:intron 40.0%
TTCTTCCATGTAACTCCACT+AGG + chr1.2:3459540-3459559 None:intergenic 40.0%
TTGGCAAGTTAGCTAGAGAT+AGG + chr1.2:3460377-3460396 None:intergenic 40.0%
! AAAGTCAACAGCACTTGTTG+AGG - chr1.2:3460998-3461017 MS.gene67076:CDS 40.0%
! ATAACCATGGTGTTTTGTGG+TGG - chr1.2:3460495-3460514 MS.gene67076:intron 40.0%
! GACATAACCATGGTGTTTTG+TGG - chr1.2:3460492-3460511 MS.gene67076:intron 40.0%
! GACGACCATTGTATTTTCAG+CGG - chr1.2:3460963-3460982 MS.gene67076:CDS 40.0%
!! CATTTTGGCCTTTCCCTTAA+TGG - chr1.2:3460593-3460612 MS.gene67076:CDS 40.0%
!!! ATGGTGTTTTGTGGTGGATA+TGG - chr1.2:3460501-3460520 MS.gene67076:intron 40.0%
AAGGTCCTAGTGGAGTTACA+TGG - chr1.2:3459532-3459551 MS.gene67076:CDS 45.0%
ACGAGAACCACTGACATTGA+AGG + chr1.2:3461081-3461100 None:intergenic 45.0%
ACTGAATAGCTGCGGTCTTA+GGG + chr1.2:3459872-3459891 None:intergenic 45.0%
ACTTGTAACAAGCAACACCC+AGG - chr1.2:3459981-3460000 MS.gene67076:intron 45.0%
AGATGGCACTGTTTACTTCG+TGG - chr1.2:3459578-3459597 MS.gene67076:CDS 45.0%
ATCAAATGCAGTGGTGTGCT+TGG + chr1.2:3460752-3460771 None:intergenic 45.0%
CCTTCACAAATAGGTCATGC+CGG + chr1.2:3460470-3460489 None:intergenic 45.0%
CTACCTTCCCACTTCTATTC+GGG + chr1.2:3460944-3460963 None:intergenic 45.0%
GATAGGGAGAGAAACACACA+TGG + chr1.2:3460360-3460379 None:intergenic 45.0%
GGAAAGCCAAAAATCCCCAT+AGG + chr1.2:3460532-3460551 None:intergenic 45.0%
GTGTTGTCAAATATCGGCCA+TGG - chr1.2:3460416-3460435 MS.gene67076:intron 45.0%
TCAAATGCAGTGGTGTGCTT+GGG + chr1.2:3460751-3460770 None:intergenic 45.0%
TGGTGATCTTCTTCTCCTCT+TGG + chr1.2:3459922-3459941 None:intergenic 45.0%
TTGACCCTTAAAGGTCCTAG+TGG - chr1.2:3459522-3459541 MS.gene67076:CDS 45.0%
TTGTCAAATATCGGCCATGG+CGG - chr1.2:3460419-3460438 MS.gene67076:intron 45.0%
!! GTAGTATTATCGATGGCGGA+TGG + chr1.2:3460566-3460585 None:intergenic 45.0%
!! TCTCCTCTTGGTTCTTTTGC+CGG + chr1.2:3459910-3459929 None:intergenic 45.0%
!!! GGATTTTTGGCTTTCCGTCA+CGG - chr1.2:3460536-3460555 MS.gene67076:intron 45.0%
!!! GTGTTTTGTGGTGGATATGG+CGG - chr1.2:3460504-3460523 MS.gene67076:intron 45.0%
!!! TTAATTATTTTAACAAAATA+TGG + chr1.2:3461056-3461075 None:intergenic 5.0%
ATCATCCGTGAACTGCTCAG+GGG + chr1.2:3459844-3459863 None:intergenic 50.0%
CAACCGGCAAAAGAACCAAG+AGG - chr1.2:3459904-3459923 MS.gene67076:intron 50.0%
CACTGAATAGCTGCGGTCTT+AGG + chr1.2:3459873-3459892 None:intergenic 50.0%
CATCATCCGTGAACTGCTCA+GGG + chr1.2:3459845-3459864 None:intergenic 50.0%
CATGCTCAAACAGCACAAGG+GGG - chr1.2:3459753-3459772 MS.gene67076:intron 50.0%
CCATGCTCAAACAGCACAAG+GGG - chr1.2:3459752-3459771 MS.gene67076:intron 50.0%
CCGGCATGACCTATTTGTGA+AGG - chr1.2:3460467-3460486 MS.gene67076:intron 50.0%
CTGTTTACTTCGTGGACGGT+TGG - chr1.2:3459586-3459605 MS.gene67076:CDS 50.0%
GAAGGGACACTGAATAGCTG+CGG + chr1.2:3459880-3459899 None:intergenic 50.0%
GAGAAACACACATGGGAGAG+AGG + chr1.2:3460352-3460371 None:intergenic 50.0%
GCCATGCTCAAACAGCACAA+GGG - chr1.2:3459751-3459770 MS.gene67076:intron 50.0%
GGCACTGTTTACTTCGTGGA+CGG - chr1.2:3459582-3459601 MS.gene67076:CDS 50.0%
TGATTCCCCTGAGCAGTTCA+CGG - chr1.2:3459836-3459855 MS.gene67076:intron 50.0%
! GCACCCCAATTAGCAGCTTT+TGG + chr1.2:3459942-3459961 None:intergenic 50.0%
!! CTCTTGGTTCTTTTGCCGGT+TGG + chr1.2:3459906-3459925 None:intergenic 50.0%
!! TGGTTCTTTTGCCGGTTGGT+AGG + chr1.2:3459902-3459921 None:intergenic 50.0%
!!! CTTTTGCCGGTTGGTAGGAA+GGG + chr1.2:3459897-3459916 None:intergenic 50.0%
!!! TCTTTTGCCGGTTGGTAGGA+AGG + chr1.2:3459898-3459917 None:intergenic 50.0%
CAGCCAGCCCGAATAGAAGT+GGG - chr1.2:3460934-3460953 MS.gene67076:CDS 55.0%
CAGCCCGAATAGAAGTGGGA+AGG - chr1.2:3460938-3460957 MS.gene67076:CDS 55.0%
CAGTGTCCCTTCCTACCAAC+CGG - chr1.2:3459888-3459907 MS.gene67076:intron 55.0%
CTTCCCACTTCTATTCGGGC+TGG + chr1.2:3460940-3460959 None:intergenic 55.0%
GCATCATCCGTGAACTGCTC+AGG + chr1.2:3459846-3459865 None:intergenic 55.0%
GGCCATGCTCAAACAGCACA+AGG - chr1.2:3459750-3459769 MS.gene67076:intron 55.0%
!! ATATCGGCCATGGCGGATTG+TGG - chr1.2:3460426-3460445 MS.gene67076:intron 55.0%
!! CCCCTTGTGCTGTTTGAGCA+TGG + chr1.2:3459755-3459774 None:intergenic 55.0%
GCAGCCAGCCCGAATAGAAG+TGG - chr1.2:3460933-3460952 MS.gene67076:CDS 60.0%
GTGGATATGGCGGCGCCTAT+GGG - chr1.2:3460514-3460533 MS.gene67076:intron 60.0%
TCCACCACCACAATCCGCCA+TGG + chr1.2:3460436-3460455 None:intergenic 60.0%
TGGATATGGCGGCGCCTATG+GGG - chr1.2:3460515-3460534 MS.gene67076:intron 60.0%
! GCGGCGCCTATGGGGATTTT+TGG - chr1.2:3460523-3460542 MS.gene67076:intron 60.0%
! GGGTGCGAGAGCACATGCTT+GGG - chr1.2:3459956-3459975 MS.gene67076:intron 60.0%
GGTGGATATGGCGGCGCCTA+TGG - chr1.2:3460513-3460532 MS.gene67076:intron 65.0%
! GGGGTGCGAGAGCACATGCT+TGG - chr1.2:3459955-3459974 MS.gene67076:intron 65.0%
! TGGCGGATGGCAGACCGTGA+CGG + chr1.2:3460553-3460572 None:intergenic 65.0%
!! ATTCGGGCTGGCTGCCTCTG+AGG + chr1.2:3460928-3460947 None:intergenic 65.0%
!! GCCATGGCGGATTGTGGTGG+TGG - chr1.2:3460432-3460451 MS.gene67076:intron 65.0%
!! TCGGCCATGGCGGATTGTGG+TGG - chr1.2:3460429-3460448 MS.gene67076:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 3459471 3461106 3459471 ID=MS.gene67076
chr1.2 mRNA 3459471 3461106 3459471 ID=MS.gene67076.t1;Parent=MS.gene67076
chr1.2 exon 3460575 3461106 3460575 ID=MS.gene67076.t1.exon1;Parent=MS.gene67076.t1
chr1.2 CDS 3460575 3461106 3460575 ID=cds.MS.gene67076.t1;Parent=MS.gene67076.t1
chr1.2 exon 3459471 3459646 3459471 ID=MS.gene67076.t1.exon2;Parent=MS.gene67076.t1
chr1.2 CDS 3459471 3459646 3459471 ID=cds.MS.gene67076.t1;Parent=MS.gene67076.t1
Gene Sequence

>MS.gene67076

GCACTTCCTAAAACATTTTCAGACAATTTAAATAAGAAGTTGCCAGAAAATTTGACCCTTAAAGGTCCTAGTGGAGTTACATGGAAGAATATAAGGCTGACAACTAGAGATGGCACTGTTTACTTCGTGGACGGTTGGCAACAATTCATGAACGATCACTCGTTGAAAGCTAATGATTTCCTTGTCTGTAAGTACAATGGTGAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTCTGCGAGAAAGAAGCTTCTTATTTTGTCGAAAAATGCGGCCATGCTCAAACAGCACAAGGGGGTAGCAATGCATCGCAAACAAACAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGCTGGTGATTCCCCTGAGCAGTTCACGGATGATGCAGTCCCTAAGACCGCAGCTATTCAGTGTCCCTTCCTACCAACCGGCAAAAGAACCAAGAGGAGAAGAAGATCACCAAAAGCTGCTAATTGGGGTGCGAGAGCACATGCTTGGGTGACTTGTAACAAGCAACACCCAGGTTAAAATATTTCTTTCTTTTCCATTAACTTTTACGATATTAAATGGAACCCAGTCAATACGAATATCTAGTGTGTATCTATGTTGACTATGATAAATTCTGATTTATATTCATATTGAATCACTAGCTAAACTTAAAGCAGCTAACCATTTTTTTTTTGGTTAACTTTGTATAACCAACCACTTTTCTTTTTTCATTTGATTTATGACTTGAATCATGTATTATTTTGATGTTCATACATGATGTATCGGCTTATAGTTTTGTTGTTATGTCACATGCTTTTACTTAAAAATGACATATCGGCCTAGTTCAAATAAATCAATTTTTCACTACCTCTATATATATTCCTCTCTCCCATGTGTGTTTCTCTCCCTATCTCTAGCTAACTTGCCAACTAAGCACTTTTATCTCGAGTGTTGTCAAATATCGGCCATGGCGGATTGTGGTGGTGGATTTTTTAACAACCGGCATGACCTATTTGTGAAGGATGACATAACCATGGTGTTTTGTGGTGGATATGGCGGCGCCTATGGGGATTTTTGGCTTTCCGTCACGGTCTGCCATCCGCCATCGATAATACTACTTCTCTTCATTTTGGCCTTTCCCTTAATGGCTATTAAACTGTCTCTCAGTCAAGTAATCTCTGGTAACCTTAATATCATCAACATAAACAAGAACTACAATTAGTTTTCCTCCTTGTGAATGTTTGAACTAAAGATTTTGATTTCCTTGACTTTTCTTATAGCCCAAGCACACCACTGCATTTGATTTCATTCTGGTTCTCAAAAATTTGTATTATAACTCATCTGATCTTCCCTAGCAAACTGATACTTGTCTAGGAAAAAGTATTTTGCATTCAAATCCAGATATTCATAACAGAGCTTATCCTTTTATTTGTAACTCATGATTGAACTGTTCAATTCCTCAGAGGCAGCCAGCCCGAATAGAAGTGGGAAGGTAGACGACCATTGTATTTTCAGCGGAGCTTCACTGTCAAAGTCAACAGCACTTGTTGAGGAAAAGATAGCCCAATCATTTTCCTCCTCATTTCCATATTTTGTTAAAATAATTAAAGCCTTCAATGTCAGTGGTTCTCGTACTATT
Protein sequence

>MS.gene67076.t1

ALPKTFSDNLNKKLPENLTLKGPSGVTWKNIRLTTRDGTVYFVDGWQQFMNDHSLKANDFLVCKYNGESHFEVLIFDGESFCEKEASYFVEKCGHAQTAQGGSNASQTNNSVEEVNTASNAGDSPEQFTDDAVPKTAAIQCPFLPTGKRTKRRRRSPKAANWGARAHAWVTCNKQHPEAASPNRSGKVDDHCIFSGASLSKSTALVEEKIAQSFSSSFPYFVKIIKAFNVSGSRTI