AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044960.t1 MTR_7g024390 98.920 648 7 0 1 648 1 648 0.0 1322
MS.gene044960.t1 MTR_7g099680 93.683 649 40 1 1 648 1 649 0.0 1258
MS.gene044960.t1 MTR_7g024580 92.638 652 41 3 1 648 1 649 0.0 1240
MS.gene044960.t1 MTR_4g063710 91.846 650 50 2 1 648 1 649 0.0 1222
MS.gene044960.t1 MTR_4g063720 91.705 651 49 2 1 648 1 649 0.0 1219
MS.gene044960.t1 MTR_4g130540 86.391 654 82 2 1 648 1 653 0.0 1149
MS.gene044960.t1 MTR_6g033850 67.317 615 200 1 1 615 1 614 0.0 852
MS.gene044960.t1 MTR_6g033760 67.045 616 202 1 1 616 1 615 0.0 842
MS.gene044960.t1 MTR_7g025760 65.862 621 208 3 1 619 1 619 0.0 838
MS.gene044960.t1 MTR_7g026030 65.862 621 207 4 1 619 1 618 0.0 832
MS.gene044960.t1 MTR_2g017730 66.942 605 180 3 9 607 8 598 0.0 826
MS.gene044960.t1 MTR_7g021440 65.366 615 209 3 1 613 1 613 0.0 823
MS.gene044960.t1 MTR_2g038260 66.397 619 201 6 1 615 1 616 0.0 823
MS.gene044960.t1 MTR_5g066800 64.331 628 209 4 1 615 1 626 0.0 822
MS.gene044960.t1 MTR_2g032550 65.905 613 205 3 6 615 7 618 0.0 817
MS.gene044960.t1 MTR_8g032650 65.862 621 207 4 1 619 1 618 0.0 816
MS.gene044960.t1 MTR_7g025820 66.499 597 196 3 1 595 1 595 0.0 811
MS.gene044960.t1 MTR_7g025720 64.734 621 214 4 1 619 1 618 0.0 810
MS.gene044960.t1 MTR_7g451380 64.563 618 215 3 1 615 1 617 0.0 808
MS.gene044960.t1 MTR_7g026110 63.533 617 219 5 1 615 1 613 0.0 804
MS.gene044960.t1 MTR_7g025790 64.563 618 214 4 1 616 1 615 0.0 801
MS.gene044960.t1 MTR_7g025620 64.918 610 209 4 1 608 1 607 0.0 798
MS.gene044960.t1 MTR_7g024030 64.812 611 210 4 1 609 1 608 0.0 798
MS.gene044960.t1 MTR_8g099945 64.984 614 209 4 7 618 36 645 0.0 798
MS.gene044960.t1 MTR_8g099795 65.147 614 208 4 7 618 36 645 0.0 798
MS.gene044960.t1 MTR_7g025630 64.251 621 203 6 1 619 1 604 0.0 791
MS.gene044960.t1 MTR_7g026090 64.553 615 212 3 1 613 1 611 0.0 790
MS.gene044960.t1 MTR_7g078190 64.000 625 216 7 1 619 1 622 0.0 788
MS.gene044960.t1 MTR_6g033870 63.099 626 224 3 2 621 3 627 0.0 786
MS.gene044960.t1 MTR_7g029415 64.332 614 211 7 6 615 13 622 0.0 786
MS.gene044960.t1 MTR_4g079590 63.502 611 218 4 1 608 1 609 0.0 785
MS.gene044960.t1 MTR_2g022050 65.049 618 212 3 1 615 1 617 0.0 785
MS.gene044960.t1 MTR_7g025740 63.328 619 213 6 1 608 1 616 0.0 782
MS.gene044960.t1 MTR_7g025770 62.783 618 225 4 1 615 1 616 0.0 781
MS.gene044960.t1 MTR_6g033955 62.460 626 229 2 1 621 1 625 0.0 781
MS.gene044960.t1 MTR_8g103930 61.965 631 207 7 1 616 1 613 0.0 778
MS.gene044960.t1 MTR_7g011590 63.857 617 206 5 1 615 1 602 0.0 777
MS.gene044960.t1 MTR_6g033820 61.356 634 239 2 1 629 1 633 0.0 776
MS.gene044960.t1 MTR_2g437440 63.107 618 206 4 1 615 1 599 0.0 776
MS.gene044960.t1 MTR_7g026170 63.328 619 220 6 1 615 1 616 0.0 776
MS.gene044960.t1 MTR_7g078210 63.782 624 218 6 1 619 1 621 0.0 775
MS.gene044960.t1 MTR_2g038270 61.146 628 228 7 1 615 1 625 0.0 764
MS.gene044960.t1 MTR_7g074460 62.783 618 208 4 1 616 1 598 0.0 750
MS.gene044960.t1 MTR_7g026130 63.124 621 217 7 1 613 1 617 0.0 750
MS.gene044960.t1 MTR_2g032580 62.197 619 197 6 1 615 1 586 0.0 744
MS.gene044960.t1 MTR_4g027145 59.905 631 234 8 1 615 1 628 0.0 736
MS.gene044960.t1 MTR_7g026140 60.258 619 221 8 1 614 1 599 0.0 729
MS.gene044960.t1 MTR_7g025260 62.478 573 211 3 49 619 21 591 0.0 723
MS.gene044960.t1 MTR_1g017130 59.083 611 205 7 1 608 1 569 0.0 712
MS.gene044960.t1 MTR_7g451360 58.937 621 190 7 1 617 1 560 0.0 702
MS.gene044960.t1 MTR_6g033800 65.019 526 181 2 90 615 1 523 0.0 696
MS.gene044960.t1 MTR_2g040260 83.000 400 66 1 1 400 1030 1427 0.0 690
MS.gene044960.t1 MTR_2g040370 87.047 386 48 1 4 389 1024 1407 0.0 689
MS.gene044960.t1 MTR_2g040370 85.233 386 54 2 4 388 1408 1791 0.0 654
MS.gene044960.t1 MTR_2g040370 87.047 386 48 1 4 389 1024 1407 0.0 689
MS.gene044960.t1 MTR_2g040370 85.195 385 54 2 4 387 1408 1790 0.0 652
MS.gene044960.t1 MTR_2g040160 82.500 400 68 1 1 400 1101 1498 0.0 677
MS.gene044960.t1 MTR_7g007000 56.543 619 218 7 1 614 1 573 0.0 674
MS.gene044960.t1 MTR_7g035155 56.149 618 212 7 1 615 1 562 0.0 663
MS.gene044960.t1 MTR_2g040220 73.128 454 104 4 1 436 1010 1463 0.0 652
MS.gene044960.t1 MTR_2g040220 56.872 211 34 4 446 648 1397 1558 1.63e-55 205
MS.gene044960.t1 MTR_4g063720 89.315 365 33 3 287 648 217 578 0.0 651
MS.gene044960.t1 MTR_4g063720 91.964 224 18 0 1 224 1 224 1.59e-144 432
MS.gene044960.t1 MTR_1g041565 55.700 614 195 10 6 615 2 542 0.0 645
MS.gene044960.t1 MTR_2g040350 79.449 399 76 3 6 400 1035 1431 0.0 645
MS.gene044960.t1 MTR_2g040350 79.449 399 76 3 6 400 817 1213 0.0 644
MS.gene044960.t1 MTR_2g032160 73.067 375 99 1 1 373 1 375 0.0 581
MS.gene044960.t1 MTR_2g032160 43.434 99 55 1 519 616 365 463 9.33e-13 71.2
MS.gene044960.t1 MTR_2g010020 52.422 578 248 10 10 580 58 615 0.0 567
MS.gene044960.t1 MTR_2g010020 52.422 578 248 10 10 580 57 614 0.0 567
MS.gene044960.t1 MTR_4g092920 51.903 578 252 9 10 578 54 614 0.0 560
MS.gene044960.t1 MTR_2g005690 47.649 638 296 12 10 637 72 681 0.0 532
MS.gene044960.t1 MTR_6g034005 49.177 547 255 8 80 615 2 536 3.21e-166 493
MS.gene044960.t1 MTR_4g092920 51.911 497 214 8 90 578 1 480 2.42e-164 482
MS.gene044960.t1 MTR_1g077230 74.823 282 69 1 1 280 1 282 1.79e-152 442
MS.gene044960.t1 MTR_4g088515 55.814 430 102 7 9 436 276 619 6.25e-146 437
MS.gene044960.t1 MTR_7g026050 51.872 374 151 3 243 615 1 346 5.01e-126 377
MS.gene044960.t1 MTR_6g033810 59.036 332 86 3 86 415 8 291 8.06e-126 374
MS.gene044960.t1 MTR_7g026080 71.138 246 69 1 1 244 1 246 1.73e-122 364
MS.gene044960.t1 MTR_6g033855 52.493 381 93 5 86 464 8 302 4.56e-120 360
MS.gene044960.t1 MTR_2g040355 47.289 461 82 10 187 646 2 302 6.49e-110 333
MS.gene044960.t1 MTR_2g031670 69.778 225 66 1 21 243 43 267 2.14e-108 331
MS.gene044960.t1 MTR_2g031670 74.627 67 16 1 342 408 275 340 2.45e-21 96.3
MS.gene044960.t1 MTR_5g006180 35.388 503 284 11 9 494 29 507 9.12e-89 287
MS.gene044960.t1 MTR_1g077240 54.545 297 125 4 320 615 1 288 3.98e-88 276
MS.gene044960.t1 MTR_2g102180 34.932 438 269 4 10 434 4 438 2.99e-84 283
MS.gene044960.t1 MTR_4g012050 34.932 438 269 4 10 434 4 438 4.84e-83 279
MS.gene044960.t1 MTR_1207s0010 71.591 176 49 1 106 281 1 175 1.03e-81 256
MS.gene044960.t1 MTR_5g097190 54.545 253 66 4 4 254 153 358 1.24e-79 257
MS.gene044960.t1 MTR_6g478100 60.849 212 69 2 36 247 10 207 7.07e-79 253
MS.gene044960.t1 MTR_6g478100 40.000 95 56 1 515 608 208 302 1.78e-12 69.3
MS.gene044960.t1 MTR_5g092570 34.660 427 270 4 10 430 4 427 1.66e-76 260
MS.gene044960.t1 MTR_3g051300 33.333 420 275 4 10 428 4 419 1.03e-75 258
MS.gene044960.t1 MTR_5g090110 33.874 493 273 13 9 482 28 486 5.96e-74 247
MS.gene044960.t1 MTR_4g115780 34.774 509 306 10 9 496 140 643 6.11e-70 240
MS.gene044960.t1 MTR_5g005870 41.718 326 178 5 265 587 35 351 2.90e-68 229
MS.gene044960.t1 MTR_4g107920 31.944 504 308 14 10 496 21 506 2.34e-67 230
MS.gene044960.t1 MTR_3g081170 27.757 526 335 13 10 498 27 544 2.13e-57 209
MS.gene044960.t1 MTR_6g033910 47.619 231 58 4 72 300 19 188 6.32e-56 188
MS.gene044960.t1 MTR_1g116250 44.364 275 110 5 342 615 56 288 1.12e-54 188
MS.gene044960.t1 MTR_7g074540 48.756 201 102 1 416 616 1 200 1.81e-54 185
MS.gene044960.t1 MTR_7g026180 75.630 119 29 0 74 192 21 139 2.81e-53 186
MS.gene044960.t1 MTR_7g026180 35.023 217 108 4 401 615 144 329 6.59e-28 115
MS.gene044960.t1 MTR_7g451390 49.180 183 91 2 436 617 10 191 4.15e-48 167
MS.gene044960.t1 MTR_2g017710 43.077 260 63 6 223 480 17 193 7.33e-48 169
MS.gene044960.t1 MTR_5g005890 38.767 227 88 4 72 297 5 181 4.20e-43 153
MS.gene044960.t1 MTR_1g068900 51.316 152 66 4 426 573 23 170 4.10e-38 139
MS.gene044960.t1 MTR_6g033805 76.056 71 17 0 1 71 1 71 8.22e-32 118
MS.gene044960.t1 MTR_4g027235 73.333 75 18 1 1 73 1 75 4.36e-30 113
MS.gene044960.t1 MTR_4g027085 73.333 75 18 1 1 73 1 75 4.36e-30 113
MS.gene044960.t1 MTR_7g026190 56.383 94 32 2 286 379 9 93 1.65e-27 110
MS.gene044960.t1 MTR_7g026190 39.496 119 69 2 498 616 94 209 1.67e-15 76.3
MS.gene044960.t1 MTR_2g040375 76.667 60 14 0 398 457 51 110 6.84e-23 94.7
MS.gene044960.t1 MTR_4g115860 46.739 92 49 0 396 487 29 120 2.30e-22 93.2
MS.gene044960.t1 MTR_6g033815 54.930 71 32 0 524 594 1 71 2.39e-20 87.0
MS.gene044960.t1 MTR_7g021430 52.000 75 36 0 213 287 1 75 1.96e-18 84.3
MS.gene044960.t1 MTR_7g026095 45.652 92 50 0 482 573 256 347 3.15e-18 87.0
MS.gene044960.t1 MTR_7g026095 50.000 88 28 2 86 173 189 260 8.38e-17 82.8
MS.gene044960.t1 MTR_7g026160 37.500 120 49 4 296 389 72 191 2.85e-12 67.4
MS.gene044960.t1 MTR_6g033995 53.226 62 21 2 1 60 1 56 9.73e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044960.t1 AT5G02500 91.398 651 53 1 1 648 1 651 0.0 1229
MS.gene044960.t1 AT3G12580 93.088 651 41 3 1 648 1 650 0.0 1228
MS.gene044960.t1 AT3G09440 91.525 649 54 1 1 648 1 649 0.0 1224
MS.gene044960.t1 AT3G09440 91.525 649 54 1 1 648 1 649 0.0 1224
MS.gene044960.t1 AT3G09440 91.525 649 54 1 1 648 1 649 0.0 1224
MS.gene044960.t1 AT3G09440 91.525 649 54 1 1 648 1 649 0.0 1224
MS.gene044960.t1 AT5G02490 89.740 653 62 2 1 648 1 653 0.0 1202
MS.gene044960.t1 AT1G56410 87.722 619 74 1 1 619 1 617 0.0 1125
MS.gene044960.t1 AT1G16030 83.231 650 103 3 1 648 1 646 0.0 1119
MS.gene044960.t1 AT5G42020 64.744 624 213 5 7 627 35 654 0.0 828
MS.gene044960.t1 AT5G42020 64.744 624 213 5 7 627 40 659 0.0 826
MS.gene044960.t1 AT5G28540 65.309 614 207 4 7 618 35 644 0.0 823
MS.gene044960.t1 AT1G09080 62.969 613 222 3 7 618 40 648 0.0 786
MS.gene044960.t1 AT1G09080 62.969 613 222 3 7 618 50 658 0.0 785
MS.gene044960.t1 AT5G02500 93.401 394 26 0 1 394 1 394 0.0 776
MS.gene044960.t1 AT5G02500 77.206 136 28 1 516 648 386 521 3.91e-57 202
MS.gene044960.t1 AT5G42020 58.814 624 195 10 7 627 35 599 0.0 699
MS.gene044960.t1 AT5G09590 52.768 578 247 9 10 580 60 618 0.0 560
MS.gene044960.t1 AT4G24280 49.349 614 285 11 10 617 81 674 0.0 540
MS.gene044960.t1 AT5G49910 48.644 627 295 11 10 628 81 688 0.0 538
MS.gene044960.t1 AT4G37910 51.903 578 252 9 10 578 55 615 0.0 533
MS.gene044960.t1 AT4G37910 51.903 578 252 9 10 578 55 615 0.0 533
MS.gene044960.t1 AT1G79930 29.468 733 416 14 10 648 4 729 5.17e-91 300
MS.gene044960.t1 AT2G32120 34.961 512 305 9 9 508 30 525 3.04e-90 291
MS.gene044960.t1 AT2G32120 34.961 512 305 9 9 508 30 525 3.04e-90 291
MS.gene044960.t1 AT1G79930 29.059 733 419 15 10 648 4 729 6.49e-89 294
MS.gene044960.t1 AT1G79920 35.845 438 265 4 10 434 4 438 1.33e-86 286
MS.gene044960.t1 AT1G79920 35.845 438 265 4 10 434 4 438 1.85e-86 286
MS.gene044960.t1 AT1G79920 35.845 438 265 4 10 434 4 438 1.85e-86 286
MS.gene044960.t1 AT1G79920 35.845 438 265 4 10 434 4 438 1.85e-86 286
MS.gene044960.t1 AT1G11660 26.975 671 411 10 10 619 4 656 2.31e-83 278
MS.gene044960.t1 AT1G11660 26.975 671 411 10 10 619 4 656 2.31e-83 278
MS.gene044960.t1 AT1G11660 26.975 671 411 10 10 619 4 656 2.31e-83 278
MS.gene044960.t1 AT1G11660 27.044 636 385 10 45 619 2 619 3.07e-75 256
MS.gene044960.t1 AT4G16660 25.734 715 419 18 5 612 46 755 2.00e-61 220
MS.gene044960.t1 AT4G16660 25.734 715 419 18 5 612 22 731 1.01e-60 218

Find 154 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTAAATTTGAGCTTTC+CGG 0.203220 7.1:-73251417 MS.gene044960:CDS
GGTTCAAGATTTGTTGCTTT+TGG 0.218491 7.1:-73251622 MS.gene044960:CDS
TAATCGACTTCTTCAATCTT+AGG 0.232445 7.1:+73250877 None:intergenic
GGATGTCACTCCATTGTCTC+TGG 0.248597 7.1:-73251601 MS.gene044960:CDS
AGAGAAAACTTGCTCCTTCT+TGG 0.262011 7.1:+73251518 None:intergenic
ATGCGGTTCTCAATCTTCTA+AGG 0.266261 7.1:+73252006 None:intergenic
ATCTTCTGCCTTGTATTTCT+CGG 0.268009 7.1:+73251218 None:intergenic
TGCATATGGTCTTGACAAAA+AGG 0.276324 7.1:-73252246 MS.gene044960:CDS
TGTAACAGTTGCTGAACTTT+GGG 0.289666 7.1:+73251753 None:intergenic
ACCCAACAGGTTGTTGTCTC+TGG 0.293783 7.1:+73251434 None:intergenic
GTTCATGATGTTGTTCTTGT+TGG 0.297305 7.1:-73251792 MS.gene044960:CDS
CGTTCGGTTTCCTTGATCAT+TGG 0.309046 7.1:+73253343 None:intergenic
TGCTGAAGAAATTTCATCTA+TGG 0.318039 7.1:-73252444 MS.gene044960:CDS
GGACCAGCAGTAACCTTAAA+AGG 0.319176 7.1:+73252521 None:intergenic
TTACCGAAAACAGTGTTAAC+AGG 0.319243 7.1:+73253245 None:intergenic
TGATACATCTTAGCAATGAT+TGG 0.323430 7.1:+73250970 None:intergenic
CATACTCGTGTGTTGGAGTA+TGG 0.336614 7.1:-73253391 MS.gene044960:CDS
CCCAGATCTATTCCGATTGC+AGG 0.350491 7.1:+73253419 None:intergenic
CACTCCATTGTCTCTGGGTC+TGG 0.356891 7.1:-73251595 MS.gene044960:CDS
CCCGACGAGGCTGTTGCTTA+TGG 0.363421 7.1:-73251690 MS.gene044960:CDS
CTGTTACAAGATTTCTTCAA+TGG 0.363779 7.1:-73251738 MS.gene044960:CDS
ATCCTTCGTGGCTTGACGTT+GGG 0.367168 7.1:+73252331 None:intergenic
GTTGGAATTGTTGTGTTCCT+TGG 0.367995 7.1:+73251540 None:intergenic
AAGGATGCTGGTGTTATTGC+TGG 0.372235 7.1:-73252314 MS.gene044960:CDS
TCCTGCAATCGGAATAGATC+TGG 0.379604 7.1:-73253420 MS.gene044960:CDS
ACAGATGCTAAACGTTTGAT+TGG 0.381796 7.1:-73252590 MS.gene044960:intron
CTCTTTCACCCTCGTAGACT+TGG 0.382367 7.1:+73251463 None:intergenic
CATGTTAAGTTCCTCAAATC+TGG 0.382817 7.1:+73251884 None:intergenic
AGAGGGTATCTTTGAAGTTA+AGG 0.389960 7.1:-73252144 MS.gene044960:CDS
CCTCCAGCAGCAGGTGGTGC+TGG 0.395029 7.1:-73250901 MS.gene044960:CDS
TCCATACCACCAGCCATATC+AGG 0.402194 7.1:+73250934 None:intergenic
TTGTAACAGTTGCTGAACTT+TGG 0.408024 7.1:+73251752 None:intergenic
GGTTGATGCAAAGAATGCTT+TGG 0.410300 7.1:-73251178 MS.gene044960:CDS
AGGTGGAGGTGCTCCTGATA+TGG 0.414427 7.1:-73250947 MS.gene044960:CDS
CGACAAAGGAAGGTTGTCTA+AGG 0.418046 7.1:-73251268 MS.gene044960:CDS
TCTGCTGAGGACAAAACAAC+TGG 0.419349 7.1:-73251318 MS.gene044960:CDS
CTTGTAGTTAACACCAATCA+TGG 0.420612 7.1:+73252487 None:intergenic
GATGTCACTCCATTGTCTCT+GGG 0.422097 7.1:-73251600 MS.gene044960:CDS
CCATAAGCAACAGCCTCGTC+GGG 0.424062 7.1:+73251690 None:intergenic
TCCTGATATGGCTGGTGGTA+TGG 0.425793 7.1:-73250935 MS.gene044960:CDS
ACAATTAAAGATGAGAAGAT+TGG 0.429309 7.1:-73251129 MS.gene044960:CDS
CATGATGTTGTTCTTGTTGG+TGG 0.435475 7.1:-73251789 MS.gene044960:CDS
CAACATAAGACGGCGTCGTT+CGG 0.436894 7.1:+73253327 None:intergenic
TCTCTCAAACACTTCTCAAC+AGG 0.442304 7.1:+73251837 None:intergenic
TTTAAGGTTACTGCTGGTCC+TGG 0.442913 7.1:-73252518 MS.gene044960:CDS
GATACATCTTAGCAATGATT+GGG 0.442977 7.1:+73250971 None:intergenic
AAGAACAAGAAGGATATTAG+TGG 0.449089 7.1:-73252041 MS.gene044960:CDS
CTCAATCTTCTAAGGGCCCT+AGG 0.453115 7.1:+73252014 None:intergenic
AAAGCTCAAATTTACCCAAC+AGG 0.453939 7.1:+73251421 None:intergenic
AAAACTTGCTCCTTCTTGGT+TGG 0.457926 7.1:+73251522 None:intergenic
ACTGCTGCGGCTATTGCATA+TGG 0.465773 7.1:-73252260 MS.gene044960:CDS
TAAGGAAGAAATTGAGAAGA+TGG 0.466344 7.1:-73251250 MS.gene044960:CDS
CCATCAACAATGGCCGGAAA+AGG 0.467610 7.1:-73253449 None:intergenic
TCGAAGCAAACTGTTATTTG+AGG 0.470916 7.1:+73251369 None:intergenic
ACTCATCAGCCTCTGCCAAC+TGG 0.471841 7.1:+73251031 None:intergenic
TTCTTGTTGGTGGTTCAACT+AGG 0.473139 7.1:-73251779 MS.gene044960:CDS
CGGTGATGCTGCTAAGAATC+AGG 0.474840 7.1:-73253279 MS.gene044960:CDS
GGACCAGCACCACCTGCTGC+TGG 0.476038 7.1:+73250898 None:intergenic
GAGATTGATACTTTGTTTGA+GGG 0.477454 7.1:-73251936 MS.gene044960:CDS
ACTGCTGGTGATACCCATCT+TGG 0.479477 7.1:-73252119 MS.gene044960:CDS
GGATCTGTTCAGAAAGTGTA+TGG 0.480034 7.1:-73251862 MS.gene044960:CDS
TTTGAAGTTAAGGCCACTGC+TGG 0.480129 7.1:-73252134 MS.gene044960:CDS
TGAGATTGATACTTTGTTTG+AGG 0.487684 7.1:-73251937 MS.gene044960:CDS
GAGATCATCGCCAATGATCA+AGG 0.487997 7.1:-73253353 MS.gene044960:CDS
ACCAGAGACAACAACCTGTT+GGG 0.489501 7.1:-73251435 MS.gene044960:CDS
CAAAATCTTCACCACCAAGA+TGG 0.490509 7.1:+73252105 None:intergenic
AATCACCCGTGCCAGATTTG+AGG 0.493096 7.1:-73251895 MS.gene044960:CDS
ACCATAAGCAACAGCCTCGT+CGG 0.494387 7.1:+73251689 None:intergenic
GGAGGTGCTCCTGATATGGC+TGG 0.498862 7.1:-73250943 MS.gene044960:CDS
ACAAGATTTCTTCAATGGAA+AGG 0.499431 7.1:-73251733 MS.gene044960:CDS
AGAAATTGAGAAGATGGTTG+AGG 0.504892 7.1:-73251244 MS.gene044960:CDS
AAAGGTGAAGGTCCTGCAAT+CGG 0.506751 7.1:-73253431 MS.gene044960:CDS
TGACGCTGCAATTCAGTGGT+TGG 0.507402 7.1:-73251061 MS.gene044960:CDS
ATCATTGCTAAGATGTATCA+AGG 0.508198 7.1:-73250967 MS.gene044960:CDS
ATGCTAAACGTTTGATTGGA+AGG 0.508528 7.1:-73252586 MS.gene044960:CDS
TCAATCTTCTAAGGGCCCTA+GGG 0.514705 7.1:+73252015 None:intergenic
GATGAAGTTCCTCCAGCAGC+AGG 0.518012 7.1:-73250910 MS.gene044960:CDS
GTGTTTGAGAGATGCTAAGA+TGG 0.518945 7.1:-73251826 MS.gene044960:CDS
TGGGAATCGTTGAAGTAAGC+TGG 0.520331 7.1:+73252350 None:intergenic
AAAATCTTCACCACCAAGAT+GGG 0.521512 7.1:+73252106 None:intergenic
AAACAAAGTATCAATCTCAA+TGG 0.526469 7.1:+73251941 None:intergenic
ACGAGGAGCTGGAGGAATGC+CGG 0.527908 7.1:+73251398 None:intergenic
GAGATTGCTGAAGCTTATCT+CGG 0.528750 7.1:-73252404 MS.gene044960:CDS
CATCCTTCGTGGCTTGACGT+TGG 0.529089 7.1:+73252330 None:intergenic
GTTTCCAGACCCAGAGACAA+TGG 0.530523 7.1:+73251591 None:intergenic
TGCTTCGACATTGATGCCAA+TGG 0.532548 7.1:-73251354 MS.gene044960:CDS
CGTCAAGCCACGAAGGATGC+TGG 0.532550 7.1:-73252326 MS.gene044960:CDS
TGAGGAACACCACGAGGAGC+TGG 0.534423 7.1:+73251387 None:intergenic
TTGAATCCATCAACAATGGC+CGG 0.536348 7.1:-73253455 None:intergenic
CATGATTGGTGTTAACTACA+AGG 0.536564 7.1:-73252486 MS.gene044960:CDS
ACTGATAGTGAGAGGTTGAT+CGG 0.537906 7.1:-73253299 MS.gene044960:CDS
AATAACACCAGCATCCTTCG+TGG 0.538327 7.1:+73252319 None:intergenic
TGAGTTTGAAGATAAGATGA+AGG 0.542099 7.1:-73251013 MS.gene044960:CDS
GCTGGTGATACCCATCTTGG+TGG 0.543324 7.1:-73252116 MS.gene044960:CDS
AGACAACCTTCCTTTGTCGT+TGG 0.545078 7.1:+73251272 None:intergenic
CCTGGTGAAAAGCCCATGAT+TGG 0.545365 7.1:-73252500 MS.gene044960:CDS
AGGATATTAGTGGAAACCCT+AGG 0.550597 7.1:-73252031 MS.gene044960:CDS
GTCACTTCTTACTATTGAAG+AGG 0.553420 7.1:-73252162 MS.gene044960:CDS
TGCGGTTCTCAATCTTCTAA+GGG 0.556751 7.1:+73252007 None:intergenic
TAGCAATGATTGGGTTGCAA+AGG 0.559904 7.1:+73250980 None:intergenic
CAGATTTGAGGAACTTAACA+TGG 0.562908 7.1:-73251883 MS.gene044960:CDS
GTAACAGTTGCTGAACTTTG+GGG 0.564399 7.1:+73251754 None:intergenic
GTTTAAGAGGAAGAACAAGA+AGG 0.567567 7.1:-73252051 MS.gene044960:CDS
TATGCAATAGCCGCAGCAGT+TGG 0.568458 7.1:+73252263 None:intergenic
GAGTGGTGAAGGCAATGAGA+AGG 0.570785 7.1:-73251643 MS.gene044960:CDS
AACCAGAGACAACAACCTGT+TGG 0.571016 7.1:-73251436 MS.gene044960:CDS
TCTCTGGGTCTGGAAACTGC+TGG 0.575088 7.1:-73251585 MS.gene044960:CDS
TCATGACAGTTCTCATTCCA+AGG 0.575999 7.1:-73251557 MS.gene044960:CDS
CACAACAATTCCAACCAAGA+AGG 0.576868 7.1:-73251532 MS.gene044960:CDS
GGACAGTAACCAGTTGGCAG+AGG 0.580101 7.1:-73251040 MS.gene044960:CDS
AAGTTCCTCAAATCTGGCAC+GGG 0.580117 7.1:+73251890 None:intergenic
CCTGCAATCGGAATAGATCT+GGG 0.580300 7.1:-73253419 MS.gene044960:CDS
AAATCTGGCACGGGTGATTG+TGG 0.583692 7.1:+73251899 None:intergenic
GAAATACAAGGCAGAAGATG+AGG 0.586111 7.1:-73251214 MS.gene044960:CDS
GGAACAACATACTCGTGTGT+TGG 0.592871 7.1:-73253398 MS.gene044960:CDS
GGATATTAGTGGAAACCCTA+GGG 0.593830 7.1:-73252030 MS.gene044960:CDS
TAAGTTCCTCAAATCTGGCA+CGG 0.594794 7.1:+73251889 None:intergenic
CCAGCACCACCTGCTGCTGG+AGG 0.596593 7.1:+73250901 None:intergenic
TTGTAGTTAACACCAATCAT+GGG 0.597119 7.1:+73252488 None:intergenic
TGAGGAAGCCGAGAAATACA+AGG 0.601017 7.1:-73251226 MS.gene044960:CDS
AGAGACATTCAAGATACCAT+TGG 0.601087 7.1:+73251338 None:intergenic
CTATCACCAACGACAAAGGA+AGG 0.602262 7.1:-73251278 MS.gene044960:CDS
GCTAAGATGTATCAAGGTGG+AGG 0.602520 7.1:-73250961 MS.gene044960:CDS
AAAACTATGCTTACAACATG+AGG 0.603991 7.1:-73251155 MS.gene044960:CDS
GTGGTTGGACAGTAACCAGT+TGG 0.608307 7.1:-73251046 MS.gene044960:CDS
ATTACTATCACCAACGACAA+AGG 0.608995 7.1:-73251282 MS.gene044960:CDS
GTAGACTTGGATCAAGACAC+CGG 0.609580 7.1:+73251476 None:intergenic
ACAATGGCCGGAAAAGGTGA+AGG 0.610468 7.1:-73253443 MS.gene044960:CDS
TCTCTTCGCTCTCTCACATG+CGG 0.617111 7.1:+73251989 None:intergenic
TACCGAAAACAGTGTTAACA+GGG 0.619335 7.1:+73253246 None:intergenic
GGCATTCCTCCAGCTCCTCG+TGG 0.619607 7.1:-73251396 MS.gene044960:CDS
CTGGGTCTGGAAACTGCTGG+TGG 0.621439 7.1:-73251582 MS.gene044960:CDS
TCAGTAAAAGCAACATAAGA+CGG 0.621546 7.1:+73253317 None:intergenic
TTCAGAGTGACATGAAGTTG+TGG 0.623777 7.1:-73252544 MS.gene044960:CDS
TCACTTCTTACTATTGAAGA+GGG 0.626386 7.1:-73252161 MS.gene044960:CDS
TATCAATGAGCCAACTGCTG+CGG 0.632408 7.1:-73252273 MS.gene044960:CDS
TGGTGTTAACTACAAGGGCG+AGG 0.634934 7.1:-73252480 MS.gene044960:CDS
CTGCTGAGGACAAAACAACT+GGG 0.640141 7.1:-73251317 MS.gene044960:CDS
GGTGCTCCTGATATGGCTGG+TGG 0.645251 7.1:-73250940 MS.gene044960:CDS
GAAGTTCCTCCAGCAGCAGG+TGG 0.652201 7.1:-73250907 MS.gene044960:CDS
CAATTGACGCTGCAATTCAG+TGG 0.657113 7.1:-73251065 MS.gene044960:CDS
ATGATTGGTGTTAACTACAA+GGG 0.659475 7.1:-73252485 MS.gene044960:CDS
AAGATGGGTATCACCAGCAG+TGG 0.661313 7.1:+73252121 None:intergenic
TTCCCAACGTCAAGCCACGA+AGG 0.662924 7.1:-73252333 MS.gene044960:CDS
GGAACACCACGAGGAGCTGG+AGG 0.670372 7.1:+73251390 None:intergenic
TGTCTTGATCCAAGTCTACG+AGG 0.670532 7.1:-73251472 MS.gene044960:CDS
GTCTTGATCCAAGTCTACGA+GGG 0.681033 7.1:-73251471 MS.gene044960:CDS
TAGACTTGGATCAAGACACC+GGG 0.682878 7.1:+73251477 None:intergenic
ACTTACTCAGACAATCAACC+CGG 0.685579 7.1:-73251495 MS.gene044960:CDS
CAAGAGTATCAACCCCGACG+AGG 0.690673 7.1:-73251703 MS.gene044960:CDS
TATCTTGAATGTCTCTGCTG+AGG 0.697510 7.1:-73251331 MS.gene044960:CDS
CATAAGCAACAGCCTCGTCG+GGG 0.699592 7.1:+73251691 None:intergenic
GTTATTTGAGGAACACCACG+AGG 0.729082 7.1:+73251381 None:intergenic
ATTGCTAAGATGTATCAAGG+TGG 0.733799 7.1:-73250964 MS.gene044960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATAAATAATTAATCTA+GGG - chr7.1:73251222-73251241 MS.gene044960:CDS 10.0%
!! TGAAAATAAATAATTAATCT+AGG - chr7.1:73251221-73251240 MS.gene044960:CDS 10.0%
!! TTTATAATGATAGAACATTA+TGG - chr7.1:73251481-73251500 MS.gene044960:CDS 15.0%
!! GATACTATTTAATTAAGACA+CGG + chr7.1:73251575-73251594 None:intergenic 20.0%
!!! AATGTGTTGATTTTTGATTT+GGG - chr7.1:73252113-73252132 MS.gene044960:CDS 20.0%
!!! ATTTGTTTGATTTTTTGAGT+TGG - chr7.1:73251446-73251465 MS.gene044960:CDS 20.0%
!!! TTTATTCTTGTTGATTAATG+AGG - chr7.1:73251395-73251414 MS.gene044960:CDS 20.0%
! ACAATTAAAGATGAGAAGAT+TGG - chr7.1:73253187-73253206 MS.gene044960:intron 25.0%
!! AAACAAAGTATCAATCTCAA+TGG + chr7.1:73252378-73252397 None:intergenic 25.0%
!! ATTTTGTTCAAGAGTTTAAG+AGG - chr7.1:73252252-73252271 MS.gene044960:CDS 25.0%
!!! AATTAATCTAGGGTTTTATC+TGG - chr7.1:73251232-73251251 MS.gene044960:CDS 25.0%
!!! GAATGTGTTGATTTTTGATT+TGG - chr7.1:73252112-73252131 MS.gene044960:CDS 25.0%
!!! TTTGATTTTTTGAGTTGGAT+TGG - chr7.1:73251451-73251470 MS.gene044960:CDS 25.0%
AAAACTATGCTTACAACATG+AGG - chr7.1:73253161-73253180 MS.gene044960:intron 30.0%
AAGAACAAGAAGGATATTAG+TGG - chr7.1:73252275-73252294 MS.gene044960:CDS 30.0%
ACAAGATTTCTTCAATGGAA+AGG - chr7.1:73252583-73252602 MS.gene044960:CDS 30.0%
ATCATTGCTAAGATGTATCA+AGG - chr7.1:73253349-73253368 MS.gene044960:CDS 30.0%
CTGTTACAAGATTTCTTCAA+TGG - chr7.1:73252578-73252597 MS.gene044960:CDS 30.0%
GATACATCTTAGCAATGATT+GGG + chr7.1:73253348-73253367 None:intergenic 30.0%
TAAGGAAGAAATTGAGAAGA+TGG - chr7.1:73253066-73253085 MS.gene044960:intron 30.0%
TCACTTCTTACTATTGAAGA+GGG - chr7.1:73252155-73252174 MS.gene044960:CDS 30.0%
TCAGTAAAAGCAACATAAGA+CGG + chr7.1:73251002-73251021 None:intergenic 30.0%
TGAGTTTGAAGATAAGATGA+AGG - chr7.1:73253303-73253322 MS.gene044960:CDS 30.0%
TGATACATCTTAGCAATGAT+TGG + chr7.1:73253349-73253368 None:intergenic 30.0%
TGCTGAAGAAATTTCATCTA+TGG - chr7.1:73251872-73251891 MS.gene044960:CDS 30.0%
TTGTAGTTAACACCAATCAT+GGG + chr7.1:73251831-73251850 None:intergenic 30.0%
! GAGATTGATACTTTGTTTGA+GGG - chr7.1:73252380-73252399 MS.gene044960:CDS 30.0%
! TAATCGACTTCTTCAATCTT+AGG + chr7.1:73253442-73253461 None:intergenic 30.0%
! TCAATCTTCTTTTTGTCTTC+AGG + chr7.1:73253226-73253245 None:intergenic 30.0%
! TGAGATTGATACTTTGTTTG+AGG - chr7.1:73252379-73252398 MS.gene044960:CDS 30.0%
! TTAGAAGTTTGTTTGCTCAT+TGG - chr7.1:73251681-73251700 MS.gene044960:CDS 30.0%
! TTGTTTGCTCATTGGTTATT+TGG - chr7.1:73251689-73251708 MS.gene044960:CDS 30.0%
!! ATGATTGGTGTTAACTACAA+GGG - chr7.1:73251831-73251850 MS.gene044960:CDS 30.0%
!! TGAAGATTTTGACAACAGAA+TGG - chr7.1:73252223-73252242 MS.gene044960:CDS 30.0%
!!! TTTTGAGTTGGATTGGAATA+TGG - chr7.1:73251458-73251477 MS.gene044960:CDS 30.0%
AAAATCTTCACCACCAAGAT+GGG + chr7.1:73252213-73252232 None:intergenic 35.0%
AAAGCTCAAATTTACCCAAC+AGG + chr7.1:73252898-73252917 None:intergenic 35.0%
ACAGATGCTAAACGTTTGAT+TGG - chr7.1:73251726-73251745 MS.gene044960:CDS 35.0%
AGAAATTGAGAAGATGGTTG+AGG - chr7.1:73253072-73253091 MS.gene044960:intron 35.0%
AGAGACATTCAAGATACCAT+TGG + chr7.1:73252981-73253000 None:intergenic 35.0%
AGATGAGGAACACAAAAAGA+AGG - chr7.1:73253117-73253136 MS.gene044960:intron 35.0%
ATCTTCTGCCTTGTATTTCT+CGG + chr7.1:73253101-73253120 None:intergenic 35.0%
ATGCTAAACGTTTGATTGGA+AGG - chr7.1:73251730-73251749 MS.gene044960:CDS 35.0%
ATTACTATCACCAACGACAA+AGG - chr7.1:73253034-73253053 MS.gene044960:intron 35.0%
ATTGCTAAGATGTATCAAGG+TGG - chr7.1:73253352-73253371 MS.gene044960:CDS 35.0%
CAGATTTGAGGAACTTAACA+TGG - chr7.1:73252433-73252452 MS.gene044960:CDS 35.0%
CATGTTAAGTTCCTCAAATC+TGG + chr7.1:73252435-73252454 None:intergenic 35.0%
CTTGTAGTTAACACCAATCA+TGG + chr7.1:73251832-73251851 None:intergenic 35.0%
GTCACTTCTTACTATTGAAG+AGG - chr7.1:73252154-73252173 MS.gene044960:CDS 35.0%
GTTCATGATGTTGTTCTTGT+TGG - chr7.1:73252524-73252543 MS.gene044960:CDS 35.0%
GTTTAAGAGGAAGAACAAGA+AGG - chr7.1:73252265-73252284 MS.gene044960:CDS 35.0%
TACCGAAAACAGTGTTAACA+GGG + chr7.1:73251073-73251092 None:intergenic 35.0%
TGTAACAGTTGCTGAACTTT+GGG + chr7.1:73252566-73252585 None:intergenic 35.0%
TTACCGAAAACAGTGTTAAC+AGG + chr7.1:73251074-73251093 None:intergenic 35.0%
TTGGGTAAATTTGAGCTTTC+CGG - chr7.1:73252899-73252918 MS.gene044960:intron 35.0%
TTGTAACAGTTGCTGAACTT+TGG + chr7.1:73252567-73252586 None:intergenic 35.0%
! AACCCTGTTAACACTGTTTT+CGG - chr7.1:73251068-73251087 MS.gene044960:CDS 35.0%
! TCGAAGCAAACTGTTATTTG+AGG + chr7.1:73252950-73252969 None:intergenic 35.0%
! TGCATATGGTCTTGACAAAA+AGG - chr7.1:73252070-73252089 MS.gene044960:CDS 35.0%
!! AGAGGGTATCTTTGAAGTTA+AGG - chr7.1:73252172-73252191 MS.gene044960:CDS 35.0%
!! CATGATTGGTGTTAACTACA+AGG - chr7.1:73251830-73251849 MS.gene044960:CDS 35.0%
!! TTGCTTTTACTGATAGTGAG+AGG - chr7.1:73251009-73251028 MS.gene044960:CDS 35.0%
!!! GGTTCAAGATTTGTTGCTTT+TGG - chr7.1:73252694-73252713 MS.gene044960:intron 35.0%
!!! GTGTTGATTTTTGATTTGGG+AGG - chr7.1:73252116-73252135 MS.gene044960:CDS 35.0%
!!! TTGATTTTTGATTTGGGAGG+TGG - chr7.1:73252119-73252138 MS.gene044960:CDS 35.0%
AAACCTTACCCCACTCAATT+GGG + chr7.1:73251529-73251548 None:intergenic 40.0%
ACTTACTCAGACAATCAACC+CGG - chr7.1:73252821-73252840 MS.gene044960:intron 40.0%
AGGATATTAGTGGAAACCCT+AGG - chr7.1:73252285-73252304 MS.gene044960:CDS 40.0%
ATGCGGTTCTCAATCTTCTA+AGG + chr7.1:73252313-73252332 None:intergenic 40.0%
CAAAATCTTCACCACCAAGA+TGG + chr7.1:73252214-73252233 None:intergenic 40.0%
CACAACAATTCCAACCAAGA+AGG - chr7.1:73252784-73252803 MS.gene044960:intron 40.0%
CATGATGTTGTTCTTGTTGG+TGG - chr7.1:73252527-73252546 MS.gene044960:CDS 40.0%
GAAATACAAGGCAGAAGATG+AGG - chr7.1:73253102-73253121 MS.gene044960:intron 40.0%
GAGATTGCTGAAGCTTATCT+CGG - chr7.1:73251912-73251931 MS.gene044960:CDS 40.0%
GGATATTAGTGGAAACCCTA+GGG - chr7.1:73252286-73252305 MS.gene044960:CDS 40.0%
GTAACAGTTGCTGAACTTTG+GGG + chr7.1:73252565-73252584 None:intergenic 40.0%
GTGTTTGAGAGATGCTAAGA+TGG - chr7.1:73252490-73252509 MS.gene044960:CDS 40.0%
GTTGGAATTGTTGTGTTCCT+TGG + chr7.1:73252779-73252798 None:intergenic 40.0%
TAAGTTCCTCAAATCTGGCA+CGG + chr7.1:73252430-73252449 None:intergenic 40.0%
TATCTTGAATGTCTCTGCTG+AGG - chr7.1:73252985-73253004 MS.gene044960:intron 40.0%
TCATGACAGTTCTCATTCCA+AGG - chr7.1:73252759-73252778 MS.gene044960:intron 40.0%
TCTCTCAAACACTTCTCAAC+AGG + chr7.1:73252482-73252501 None:intergenic 40.0%
TGCGGTTCTCAATCTTCTAA+GGG + chr7.1:73252312-73252331 None:intergenic 40.0%
TTCAGAGTGACATGAAGTTG+TGG - chr7.1:73251772-73251791 MS.gene044960:CDS 40.0%
! AAAACTTGCTCCTTCTTGGT+TGG + chr7.1:73252797-73252816 None:intergenic 40.0%
! ACTGATAGTGAGAGGTTGAT+CGG - chr7.1:73251017-73251036 MS.gene044960:CDS 40.0%
! AGAGAAAACTTGCTCCTTCT+TGG + chr7.1:73252801-73252820 None:intergenic 40.0%
! CATGAAGTTGTGGCCTTTTA+AGG - chr7.1:73251782-73251801 MS.gene044960:CDS 40.0%
! GGATCTGTTCAGAAAGTGTA+TGG - chr7.1:73252454-73252473 MS.gene044960:CDS 40.0%
! GGTTGATGCAAAGAATGCTT+TGG - chr7.1:73253138-73253157 MS.gene044960:intron 40.0%
! TAGCAATGATTGGGTTGCAA+AGG + chr7.1:73253339-73253358 None:intergenic 40.0%
!! GTACAAGCAGCTATTTTGAG+TGG - chr7.1:73252656-73252675 MS.gene044960:intron 40.0%
!! TTCTTGTTGGTGGTTCAACT+AGG - chr7.1:73252537-73252556 MS.gene044960:CDS 40.0%
AAAGGTGAAGGTCCTGCAAT+CGG - chr7.1:73250885-73250904 MS.gene044960:CDS 45.0%
AACCAGAGACAACAACCTGT+TGG - chr7.1:73252880-73252899 MS.gene044960:intron 45.0%
AAGTTCCTCAAATCTGGCAC+GGG + chr7.1:73252429-73252448 None:intergenic 45.0%
AATAACACCAGCATCCTTCG+TGG + chr7.1:73252000-73252019 None:intergenic 45.0%
ACCAGAGACAACAACCTGTT+GGG - chr7.1:73252881-73252900 MS.gene044960:intron 45.0%
AGACAACCTTCCTTTGTCGT+TGG + chr7.1:73253047-73253066 None:intergenic 45.0%
CAAACCTTACCCCACTCAAT+TGG + chr7.1:73251530-73251549 None:intergenic 45.0%
CAATTGACGCTGCAATTCAG+TGG - chr7.1:73253251-73253270 MS.gene044960:CDS 45.0%
CAATTGAGTGGGGTAAGGTT+TGG - chr7.1:73251528-73251547 MS.gene044960:CDS 45.0%
CATACTCGTGTGTTGGAGTA+TGG - chr7.1:73250925-73250944 MS.gene044960:CDS 45.0%
CCTGCAATCGGAATAGATCT+GGG - chr7.1:73250897-73250916 MS.gene044960:CDS 45.0%
CGACAAAGGAAGGTTGTCTA+AGG - chr7.1:73253048-73253067 MS.gene044960:intron 45.0%
CGTTCGGTTTCCTTGATCAT+TGG + chr7.1:73250976-73250995 None:intergenic 45.0%
CTATCACCAACGACAAAGGA+AGG - chr7.1:73253038-73253057 MS.gene044960:intron 45.0%
CTGCTGAGGACAAAACAACT+GGG - chr7.1:73252999-73253018 MS.gene044960:intron 45.0%
GAGATCATCGCCAATGATCA+AGG - chr7.1:73250963-73250982 MS.gene044960:CDS 45.0%
GATGTCACTCCATTGTCTCT+GGG - chr7.1:73252716-73252735 MS.gene044960:intron 45.0%
GCTAAGATGTATCAAGGTGG+AGG - chr7.1:73253355-73253374 MS.gene044960:CDS 45.0%
GGAACAACATACTCGTGTGT+TGG - chr7.1:73250918-73250937 MS.gene044960:CDS 45.0%
GGACCAGCAGTAACCTTAAA+AGG + chr7.1:73251798-73251817 None:intergenic 45.0%
GTAGACTTGGATCAAGACAC+CGG + chr7.1:73252843-73252862 None:intergenic 45.0%
GTCTTGATCCAAGTCTACGA+GGG - chr7.1:73252845-73252864 MS.gene044960:intron 45.0%
GTTATTTGAGGAACACCACG+AGG + chr7.1:73252938-73252957 None:intergenic 45.0%
TAGACTTGGATCAAGACACC+GGG + chr7.1:73252842-73252861 None:intergenic 45.0%
TATCAATGAGCCAACTGCTG+CGG - chr7.1:73252043-73252062 MS.gene044960:CDS 45.0%
TCCTGCAATCGGAATAGATC+TGG - chr7.1:73250896-73250915 MS.gene044960:CDS 45.0%
TCTGCTGAGGACAAAACAAC+TGG - chr7.1:73252998-73253017 MS.gene044960:intron 45.0%
TGAGGAAGCCGAGAAATACA+AGG - chr7.1:73253090-73253109 MS.gene044960:intron 45.0%
TGCTTCGACATTGATGCCAA+TGG - chr7.1:73252962-73252981 MS.gene044960:intron 45.0%
TGGGAATCGTTGAAGTAAGC+TGG + chr7.1:73251969-73251988 None:intergenic 45.0%
TGTCTTGATCCAAGTCTACG+AGG - chr7.1:73252844-73252863 MS.gene044960:intron 45.0%
! TCAATCTTCTAAGGGCCCTA+GGG + chr7.1:73252304-73252323 None:intergenic 45.0%
! TTTAAGGTTACTGCTGGTCC+TGG - chr7.1:73251798-73251817 MS.gene044960:CDS 45.0%
! TTTGAAGTTAAGGCCACTGC+TGG - chr7.1:73252182-73252201 MS.gene044960:CDS 45.0%
!! AAGGATGCTGGTGTTATTGC+TGG - chr7.1:73252002-73252021 MS.gene044960:CDS 45.0%
!! GCAGCTATTTTGAGTGGTGA+AGG - chr7.1:73252662-73252681 MS.gene044960:intron 45.0%
!!! TGGCCTTTTAAGGTTACTGC+TGG - chr7.1:73251792-73251811 MS.gene044960:CDS 45.0%
!!! TTTTTATATTGAAATTTAAT+TGG - chr7.1:73251653-73251672 MS.gene044960:CDS 5.0%
AAATCTGGCACGGGTGATTG+TGG + chr7.1:73252420-73252439 None:intergenic 50.0%
AAGATGGGTATCACCAGCAG+TGG + chr7.1:73252198-73252217 None:intergenic 50.0%
AATCACCCGTGCCAGATTTG+AGG - chr7.1:73252421-73252440 MS.gene044960:CDS 50.0%
ACCATAAGCAACAGCCTCGT+CGG + chr7.1:73252630-73252649 None:intergenic 50.0%
ACCCAACAGGTTGTTGTCTC+TGG + chr7.1:73252885-73252904 None:intergenic 50.0%
ACTGCTGCGGCTATTGCATA+TGG - chr7.1:73252056-73252075 MS.gene044960:CDS 50.0%
ACTGCTGGTGATACCCATCT+TGG - chr7.1:73252197-73252216 MS.gene044960:CDS 50.0%
ATCCTTCGTGGCTTGACGTT+GGG + chr7.1:73251988-73252007 None:intergenic 50.0%
ATGTAGCCGACCCAATTGAG+TGG - chr7.1:73251516-73251535 MS.gene044960:CDS 50.0%
CAACATAAGACGGCGTCGTT+CGG + chr7.1:73250992-73251011 None:intergenic 50.0%
CCCAGATCTATTCCGATTGC+AGG + chr7.1:73250900-73250919 None:intergenic 50.0%
CCTGGTGAAAAGCCCATGAT+TGG - chr7.1:73251816-73251835 MS.gene044960:CDS 50.0%
CGGTGATGCTGCTAAGAATC+AGG - chr7.1:73251037-73251056 MS.gene044960:CDS 50.0%
CTCTTTCACCCTCGTAGACT+TGG + chr7.1:73252856-73252875 None:intergenic 50.0%
CTTACCCCACTCAATTGGGT+CGG + chr7.1:73251525-73251544 None:intergenic 50.0%
GACAAAAAGGCGACGAGTGT+TGG - chr7.1:73252083-73252102 MS.gene044960:CDS 50.0%
GAGTGGTGAAGGCAATGAGA+AGG - chr7.1:73252673-73252692 MS.gene044960:intron 50.0%
GGATGTCACTCCATTGTCTC+TGG - chr7.1:73252715-73252734 MS.gene044960:intron 50.0%
GTGGTTGGACAGTAACCAGT+TGG - chr7.1:73253270-73253289 MS.gene044960:CDS 50.0%
GTTTCCAGACCCAGAGACAA+TGG + chr7.1:73252728-73252747 None:intergenic 50.0%
TATGCAATAGCCGCAGCAGT+TGG + chr7.1:73252056-73252075 None:intergenic 50.0%
TCCATACCACCAGCCATATC+AGG + chr7.1:73253385-73253404 None:intergenic 50.0%
TCCTGATATGGCTGGTGGTA+TGG - chr7.1:73253381-73253400 MS.gene044960:CDS 50.0%
TCTCTTCGCTCTCTCACATG+CGG + chr7.1:73252330-73252349 None:intergenic 50.0%
TGACGCTGCAATTCAGTGGT+TGG - chr7.1:73253255-73253274 MS.gene044960:CDS 50.0%
TGTAGCCGACCCAATTGAGT+GGG - chr7.1:73251517-73251536 MS.gene044960:CDS 50.0%
! CCAATCATGGGCTTTTCACC+AGG + chr7.1:73251819-73251838 None:intergenic 50.0%
! CTCAATCTTCTAAGGGCCCT+AGG + chr7.1:73252305-73252324 None:intergenic 50.0%
! TGCAGGACCTTCACCTTTTC+CGG + chr7.1:73250883-73250902 None:intergenic 50.0%
! TGGTGTTAACTACAAGGGCG+AGG - chr7.1:73251836-73251855 MS.gene044960:CDS 50.0%
ACTCATCAGCCTCTGCCAAC+TGG + chr7.1:73253288-73253307 None:intergenic 55.0%
CACTCCATTGTCTCTGGGTC+TGG - chr7.1:73252721-73252740 MS.gene044960:intron 55.0%
CATAAGCAACAGCCTCGTCG+GGG + chr7.1:73252628-73252647 None:intergenic 55.0%
CATCCTTCGTGGCTTGACGT+TGG + chr7.1:73251989-73252008 None:intergenic 55.0%
CCATAAGCAACAGCCTCGTC+GGG + chr7.1:73252629-73252648 None:intergenic 55.0%
CGACCCAATTGAGTGGGGTA+AGG - chr7.1:73251523-73251542 MS.gene044960:CDS 55.0%
GATGAAGTTCCTCCAGCAGC+AGG - chr7.1:73253406-73253425 MS.gene044960:CDS 55.0%
GCTGGTGATACCCATCTTGG+TGG - chr7.1:73252200-73252219 MS.gene044960:CDS 55.0%
GGACAGTAACCAGTTGGCAG+AGG - chr7.1:73253276-73253295 MS.gene044960:CDS 55.0%
GTAGCCGACCCAATTGAGTG+GGG - chr7.1:73251518-73251537 MS.gene044960:CDS 55.0%
TCTCTGGGTCTGGAAACTGC+TGG - chr7.1:73252731-73252750 MS.gene044960:intron 55.0%
TTCCCAACGTCAAGCCACGA+AGG - chr7.1:73251983-73252002 MS.gene044960:CDS 55.0%
!! AGGTGGAGGTGCTCCTGATA+TGG - chr7.1:73253369-73253388 MS.gene044960:CDS 55.0%
!! CAAGAGTATCAACCCCGACG+AGG - chr7.1:73252613-73252632 MS.gene044960:intron 55.0%
ACGAGGAGCTGGAGGAATGC+CGG + chr7.1:73252921-73252940 None:intergenic 60.0%
CGTCAAGCCACGAAGGATGC+TGG - chr7.1:73251990-73252009 MS.gene044960:CDS 60.0%
CTGGGTCTGGAAACTGCTGG+TGG - chr7.1:73252734-73252753 MS.gene044960:intron 60.0%
GAAGTTCCTCCAGCAGCAGG+TGG - chr7.1:73253409-73253428 MS.gene044960:CDS 60.0%
GGTGCTCCTGATATGGCTGG+TGG - chr7.1:73253376-73253395 MS.gene044960:CDS 60.0%
TGAGGAACACCACGAGGAGC+TGG + chr7.1:73252932-73252951 None:intergenic 60.0%
! CCCGACGAGGCTGTTGCTTA+TGG - chr7.1:73252626-73252645 MS.gene044960:intron 60.0%
!! GGAGGTGCTCCTGATATGGC+TGG - chr7.1:73253373-73253392 MS.gene044960:CDS 60.0%
GGAACACCACGAGGAGCTGG+AGG + chr7.1:73252929-73252948 None:intergenic 65.0%
GGCATTCCTCCAGCTCCTCG+TGG - chr7.1:73252920-73252939 MS.gene044960:intron 65.0%
CCAGCACCACCTGCTGCTGG+AGG + chr7.1:73253418-73253437 None:intergenic 70.0%
CCTCCAGCAGCAGGTGGTGC+TGG - chr7.1:73253415-73253434 MS.gene044960:CDS 70.0%
GGACCAGCACCACCTGCTGC+TGG + chr7.1:73253421-73253440 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 73250876 73253462 73250876 ID=MS.gene044960
chr7.1 mRNA 73250876 73253462 73250876 ID=MS.gene044960.t1;Parent=MS.gene044960
chr7.1 exon 73253249 73253462 73253249 ID=MS.gene044960.t1.exon1;Parent=MS.gene044960.t1
chr7.1 CDS 73253249 73253462 73253249 ID=cds.MS.gene044960.t1;Parent=MS.gene044960.t1
chr7.1 exon 73250876 73252608 73250876 ID=MS.gene044960.t1.exon2;Parent=MS.gene044960.t1
chr7.1 CDS 73250876 73252608 73250876 ID=cds.MS.gene044960.t1;Parent=MS.gene044960.t1
Gene Sequence

>MS.gene044960

ATGGCCGGAAAAGGTGAAGGTCCTGCAATCGGAATAGATCTGGGAACAACATACTCGTGTGTTGGAGTATGGCAACACGATCGTGTTGAGATCATCGCCAATGATCAAGGAAACCGAACGACGCCGTCTTATGTTGCTTTTACTGATAGTGAGAGGTTGATCGGTGATGCTGCTAAGAATCAGGTTGCGATGAACCCTGTTAACACTGTTTTCGGTAAGATTTCGATTCTCAACATTCACATTATTAAAGTTTTGATTTTGATATGCAGATTGTGATTTCATTGTTATATGTACAGCATTGTCGTTATTACGTTATATATGTACATTGTAATTTTTTTTTATTGTTGAAAATAAATAATTAATCTAGGGTTTTATCTGGTTAATTTTCAATTATTTGTTTGTTGTGATTTGAAGCTTGTGAGTTCTTTAATGTATATGATGTTTGTTAAATTAAATAATTAATTATTAGATATGAAGATATGAACATTATATATGCTGTTATGTTATATTATATTTACTTTTATTCTTGTTGATTAATGAGGTTTAGAATAATGAGATTTACTGAGTGTAATTTGTTTGATTTTTTGAGTTGGATTGGAATATGGTTTATAATGATAGAACATTATGGTGTAATTTGATCATGTAGCCGACCCAATTGAGTGGGGTAAGGTTTGGTTGTTGTTGAGATGAATGAGTCCGTGTCTTAATTAAATAGTATCATGCAAAAGATTGATTTACTATGATGATATTTGATAAGCTTGATTGTTATTTATTTATTTTTTATATTGAAATTTAATTGGTTTATTTAGAAGTTTGTTTGCTCATTGGTTATTTGGATGTGTATGATAAAACAGATGCTAAACGTTTGATTGGAAGGAGAGTTTCTGATGCATCTGTTCAGAGTGACATGAAGTTGTGGCCTTTTAAGGTTACTGCTGGTCCTGGTGAAAAGCCCATGATTGGTGTTAACTACAAGGGCGAGGACAAGCAATTTGCTGCTGAAGAAATTTCATCTATGGTGCTTATGAAGATGCGTGAGATTGCTGAAGCTTATCTCGGTTCAGCAGTGAAGAATGCTGTTGTTACAGTTCCAGCTTACTTCAACGATTCCCAACGTCAAGCCACGAAGGATGCTGGTGTTATTGCTGGCTTGAATGTTATGAGAATTATCAATGAGCCAACTGCTGCGGCTATTGCATATGGTCTTGACAAAAAGGCGACGAGTGTTGGCGAGAAGAATGTGTTGATTTTTGATTTGGGAGGTGGTACTTTTGATGTGTCACTTCTTACTATTGAAGAGGGTATCTTTGAAGTTAAGGCCACTGCTGGTGATACCCATCTTGGTGGTGAAGATTTTGACAACAGAATGGTTAATCATTTTGTTCAAGAGTTTAAGAGGAAGAACAAGAAGGATATTAGTGGAAACCCTAGGGCCCTTAGAAGATTGAGAACCGCATGTGAGAGAGCGAAGAGAACTCTCTCATCTACTGCACAAACTACCATTGAGATTGATACTTTGTTTGAGGGTGTTGATTTTTACACCACAATCACCCGTGCCAGATTTGAGGAACTTAACATGGATCTGTTCAGAAAGTGTATGGAGCCTGTTGAGAAGTGTTTGAGAGATGCTAAGATGGACAAGAACTCTGTTCATGATGTTGTTCTTGTTGGTGGTTCAACTAGGATCCCCAAAGTTCAGCAACTGTTACAAGATTTCTTCAATGGAAAGGAGCTATGCAAGAGTATCAACCCCGACGAGGCTGTTGCTTATGGTGCTGCTGTACAAGCAGCTATTTTGAGTGGTGAAGGCAATGAGAAGGTTCAAGATTTGTTGCTTTTGGATGTCACTCCATTGTCTCTGGGTCTGGAAACTGCTGGTGGTGTCATGACAGTTCTCATTCCAAGGAACACAACAATTCCAACCAAGAAGGAGCAAGTTTTCTCTACTTACTCAGACAATCAACCCGGTGTCTTGATCCAAGTCTACGAGGGTGAAAGAGCAAGAACCAGAGACAACAACCTGTTGGGTAAATTTGAGCTTTCCGGCATTCCTCCAGCTCCTCGTGGTGTTCCTCAAATAACAGTTTGCTTCGACATTGATGCCAATGGTATCTTGAATGTCTCTGCTGAGGACAAAACAACTGGGCAGAAGAACAAGATTACTATCACCAACGACAAAGGAAGGTTGTCTAAGGAAGAAATTGAGAAGATGGTTGAGGAAGCCGAGAAATACAAGGCAGAAGATGAGGAACACAAAAAGAAGGTTGATGCAAAGAATGCTTTGGAAAACTATGCTTACAACATGAGGAACACAATTAAAGATGAGAAGATTGGTTCAAAGCTTTCACCTGAAGACAAAAAGAAGATTGATGATGCAATTGACGCTGCAATTCAGTGGTTGGACAGTAACCAGTTGGCAGAGGCTGATGAGTTTGAAGATAAGATGAAGGAACTTGAGAGCCTTTGCAACCCAATCATTGCTAAGATGTATCAAGGTGGAGGTGCTCCTGATATGGCTGGTGGTATGGATGATGAAGTTCCTCCAGCAGCAGGTGGTGCTGGTCCTAAGATTGAAGAAGTCGATTAA

Protein sequence

>MS.gene044960.t1

MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPVNTVFDAKRLIGRRVSDASVQSDMKLWPFKVTAGPGEKPMIGVNYKGEDKQFAAEEISSMVLMKMREIAEAYLGSAVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDTLFEGVDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKNSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVEEAEKYKAEDEEHKKKVDAKNALENYAYNMRNTIKDEKIGSKLSPEDKKKIDDAIDAAIQWLDSNQLAEADEFEDKMKELESLCNPIIAKMYQGGGAPDMAGGMDDEVPPAAGGAGPKIEEVD