Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30654.t1 | XP_013452304.1 | 99.3 | 699 | 5 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1236.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30654.t1 | P51819 | 93.6 | 699 | 44 | 1 | 1 | 699 | 6 | 703 | 0.0e+00 | 1176.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30654.t1 | A0A072U9J1 | 99.3 | 699 | 5 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1236.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055753 | MS.gene30654 | 0.843584 | 1.28E-58 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30654.t1 | MTR_6g452990 | 99.285 | 699 | 5 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1415 |
| MS.gene30654.t1 | MTR_1g099840 | 92.571 | 700 | 35 | 3 | 1 | 699 | 6 | 689 | 0.0 | 1226 |
| MS.gene30654.t1 | MTR_5g096430 | 88.017 | 701 | 80 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1154 |
| MS.gene30654.t1 | MTR_5g096460 | 88.017 | 701 | 80 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1154 |
| MS.gene30654.t1 | MTR_1g025430 | 48.805 | 711 | 318 | 8 | 2 | 673 | 75 | 778 | 0.0 | 657 |
| MS.gene30654.t1 | MTR_5g097320 | 46.824 | 677 | 338 | 10 | 4 | 668 | 89 | 755 | 0.0 | 596 |
| MS.gene30654.t1 | MTR_0009s0390 | 45.575 | 678 | 344 | 11 | 4 | 668 | 81 | 746 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30654.t1 | AT5G52640 | 91.000 | 700 | 62 | 1 | 1 | 699 | 1 | 700 | 0.0 | 1228 |
| MS.gene30654.t1 | AT5G56000 | 86.143 | 700 | 95 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1160 |
| MS.gene30654.t1 | AT5G56030 | 86.857 | 700 | 90 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1155 |
| MS.gene30654.t1 | AT5G56010 | 86.571 | 700 | 92 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1151 |
| MS.gene30654.t1 | AT5G56030 | 83.402 | 729 | 90 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1141 |
| MS.gene30654.t1 | AT4G24190 | 49.364 | 707 | 318 | 7 | 2 | 673 | 74 | 775 | 0.0 | 653 |
| MS.gene30654.t1 | AT4G24190 | 49.364 | 707 | 318 | 7 | 2 | 673 | 74 | 775 | 0.0 | 652 |
| MS.gene30654.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene30654.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene30654.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene30654.t1 | AT2G04030 | 47.647 | 680 | 327 | 12 | 2 | 668 | 74 | 737 | 0.0 | 606 |
| MS.gene30654.t1 | AT2G04030 | 47.198 | 678 | 330 | 12 | 2 | 668 | 74 | 734 | 0.0 | 596 |
Find 0 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAATTATACGATTTTT+TGG | - | 43368:155571-155590 | MS.gene30654:intron | 10.0% |
| !! | AAATCGTATAATTAATATAC+TGG | + | 43368:155569-155588 | None:intergenic | 15.0% |
| !! | TATAATTATGTTAAAACTAC+CGG | - | 43368:154916-154935 | MS.gene30654:CDS | 15.0% |
| !!! | TGTAAATTTTGTTAAGATTA+TGG | - | 43368:154685-154704 | MS.gene30654:CDS | 15.0% |
| !! | TCAACTAAAATTAACTTCAT+AGG | + | 43368:153997-154016 | None:intergenic | 20.0% |
| !!! | ACGAAGTTTATTTTACTAAA+CGG | - | 43368:154393-154412 | MS.gene30654:CDS | 20.0% |
| !!! | AGTTTTTCAATTACATAACA+AGG | + | 43368:155366-155385 | None:intergenic | 20.0% |
| !!! | TAAAATTGTTTTTATGTCAG+TGG | - | 43368:153967-153986 | MS.gene30654:CDS | 20.0% |
| !!! | TTCTCAAAGAATTTGAAATT+GGG | - | 43368:156498-156517 | MS.gene30654:intron | 20.0% |
| !!! | TTTCTCAAAGAATTTGAAAT+TGG | - | 43368:156497-156516 | MS.gene30654:intron | 20.0% |
| ! | ATTCATAGGATGTTGAAATT+GGG | - | 43368:157242-157261 | MS.gene30654:CDS | 25.0% |
| ! | CAAGAAGAAAAAGAAGATTA+AGG | - | 43368:155999-156018 | MS.gene30654:CDS | 25.0% |
| ! | CATAATTATAATTAACAGCG+AGG | + | 43368:154906-154925 | None:intergenic | 25.0% |
| ! | CTAAACTTTGCTAAAACTAT+TGG | - | 43368:155327-155346 | MS.gene30654:intron | 25.0% |
| ! | GTAACTCAGAGATTAAATTA+GGG | - | 43368:155694-155713 | MS.gene30654:intron | 25.0% |
| ! | TGTAACTCAGAGATTAAATT+AGG | - | 43368:155693-155712 | MS.gene30654:intron | 25.0% |
| !! | AATTTCTGAATGTTCTGTTT+TGG | - | 43368:154997-155016 | MS.gene30654:CDS | 25.0% |
| !! | ACAACATAAAGCTTTATGTT+AGG | - | 43368:156253-156272 | MS.gene30654:intron | 25.0% |
| !! | ATTTCTGAATGTTCTGTTTT+GGG | - | 43368:154998-155017 | MS.gene30654:CDS | 25.0% |
| !! | ATTTTACTAAACGGTGTTTT+TGG | - | 43368:154402-154421 | MS.gene30654:CDS | 25.0% |
| !! | CTTAATCTTCTTTTTCTTCT+TGG | + | 43368:156001-156020 | None:intergenic | 25.0% |
| !!! | AGCATAAGTTTTGATTATGA+AGG | - | 43368:154345-154364 | MS.gene30654:CDS | 25.0% |
| !!! | ATGTTATGCTTTAGTTTTGT+TGG | - | 43368:155433-155452 | MS.gene30654:intron | 25.0% |
| AACAGAACATTCAGAAATTC+AGG | + | 43368:154996-155015 | None:intergenic | 30.0% | |
| AATTATGAGATTACCTGCTT+TGG | + | 43368:154576-154595 | None:intergenic | 30.0% | |
| AGTCTGTAGATGTTTAATGT+TGG | - | 43368:155470-155489 | MS.gene30654:intron | 30.0% | |
| CTAAACGTTCAAGAAAATCA+CGG | + | 43368:154665-154684 | None:intergenic | 30.0% | |
| CTGGTATCAAACAAATCAAA+GGG | + | 43368:156222-156241 | None:intergenic | 30.0% | |
| GAAGAAAAAGAAGATTAAGG+AGG | - | 43368:156002-156021 | MS.gene30654:CDS | 30.0% | |
| GATTCATAGGATGTTGAAAT+TGG | - | 43368:157241-157260 | MS.gene30654:intron | 30.0% | |
| GCATATGTGTGTAAATTAAC+CGG | + | 43368:154938-154957 | None:intergenic | 30.0% | |
| TAAGAATGATAAGTCAGTGA+AGG | - | 43368:157139-157158 | MS.gene30654:intron | 30.0% | |
| TATGTTGTTCATCTTCTTTC+TGG | + | 43368:156241-156260 | None:intergenic | 30.0% | |
| TCTGGTATCAAACAAATCAA+AGG | + | 43368:156223-156242 | None:intergenic | 30.0% | |
| TTAGCTATCCAATTTACCTT+TGG | - | 43368:155869-155888 | MS.gene30654:CDS | 30.0% | |
| TTATGACCAGTTGGAATATT+TGG | - | 43368:155801-155820 | MS.gene30654:CDS | 30.0% | |
| ! | ACATAAAGCTTTATGTTAGG+AGG | - | 43368:156256-156275 | MS.gene30654:intron | 30.0% |
| ! | CATAAAGCTTTATGTTAGGA+GGG | - | 43368:156257-156276 | MS.gene30654:intron | 30.0% |
| ! | CTCATAATTGCATGTTGTTT+CGG | - | 43368:154587-154606 | MS.gene30654:CDS | 30.0% |
| ! | TGATTCATTTTATGACCAGT+TGG | - | 43368:155792-155811 | MS.gene30654:CDS | 30.0% |
| !! | ATTACTTTTGCAACCCATTA+GGG | - | 43368:155388-155407 | MS.gene30654:intron | 30.0% |
| !! | CACTGACTTATCATTCTTAT+CGG | + | 43368:157138-157157 | None:intergenic | 30.0% |
| !! | TATTACTTTTGCAACCCATT+AGG | - | 43368:155387-155406 | MS.gene30654:intron | 30.0% |
| !! | TTAGATTTGGTGAACAACTT+GGG | - | 43368:155029-155048 | MS.gene30654:CDS | 30.0% |
| !! | TTGGGTCTATGTTTTAGATT+TGG | - | 43368:155016-155035 | MS.gene30654:CDS | 30.0% |
| !! | TTTAGATTTGGTGAACAACT+TGG | - | 43368:155028-155047 | MS.gene30654:CDS | 30.0% |
| AAGGACATTTACTACATCAC+TGG | - | 43368:156642-156661 | MS.gene30654:intron | 35.0% | |
| ACAAGATCTTGAAGGTGATT+AGG | - | 43368:156394-156413 | MS.gene30654:intron | 35.0% | |
| ACTGATAAGAGTAAGCTTGA+TGG | - | 43368:154470-154489 | MS.gene30654:CDS | 35.0% | |
| ACTGTTACAAGAGATACTGA+AGG | - | 43368:155239-155258 | MS.gene30654:CDS | 35.0% | |
| AGGGTTATGAAGGAAATCTT+GGG | - | 43368:156897-156916 | MS.gene30654:intron | 35.0% | |
| AGTATCTCTTGTAACAGTGA+AGG | + | 43368:155237-155256 | None:intergenic | 35.0% | |
| AGTTGGAATATTTGGAAGAG+AGG | - | 43368:155809-155828 | MS.gene30654:CDS | 35.0% | |
| ATACGTTCAATCATAAGCGT+TGG | + | 43368:154728-154747 | None:intergenic | 35.0% | |
| ATGGAAATCAACCCTGATAA+TGG | - | 43368:157080-157099 | MS.gene30654:intron | 35.0% | |
| ATGTCACCAGAATGAAAGAA+GGG | - | 43368:156616-156635 | MS.gene30654:CDS | 35.0% | |
| CAACACTTTCTATAGCAACA+AGG | - | 43368:153790-153809 | MS.gene30654:CDS | 35.0% | |
| CATGTCTAGCAAGAAAACTA+TGG | - | 43368:157061-157080 | MS.gene30654:intron | 35.0% | |
| CTTATGATTGAACGTATGTC+TGG | - | 43368:154731-154750 | MS.gene30654:CDS | 35.0% | |
| GCTCTATGATTTCTGTAACT+TGG | - | 43368:155609-155628 | MS.gene30654:intron | 35.0% | |
| TAACATGGAGAGAATCATGA+AGG | - | 43368:157004-157023 | MS.gene30654:intron | 35.0% | |
| TATGTCACCAGAATGAAAGA+AGG | - | 43368:156615-156634 | MS.gene30654:CDS | 35.0% | |
| TCTCTTCCAAATATTCCAAC+TGG | + | 43368:155810-155829 | None:intergenic | 35.0% | |
| TGATGATCAAGCTAAGAAGT+TGG | + | 43368:153772-153791 | None:intergenic | 35.0% | |
| TTTGAGGAAAAGAGTGATCT+TGG | + | 43368:155285-155304 | None:intergenic | 35.0% | |
| TTTGGAAGAGAGGAGAATTA+AGG | - | 43368:155819-155838 | MS.gene30654:CDS | 35.0% | |
| ! | ATGATGATGAGCAATACGTT+TGG | - | 43368:155192-155211 | MS.gene30654:CDS | 35.0% |
| ! | GAAATTGGTTTCAGCTACAA+AGG | - | 43368:156794-156813 | MS.gene30654:intron | 35.0% |
| ! | GAACATGAGTGAGAATTTTC+TGG | - | 43368:155646-155665 | MS.gene30654:intron | 35.0% |
| ! | TCTTTTCGGAACAAAGAGAA+TGG | + | 43368:156196-156215 | None:intergenic | 35.0% |
| ! | TGATGATGAGCAATACGTTT+GGG | - | 43368:155193-155212 | MS.gene30654:CDS | 35.0% |
| ! | TTTCAAAAAGCAGAAGCACA+AGG | + | 43368:157166-157185 | None:intergenic | 35.0% |
| ! | TTTTTGGATGTGGTTTTCGA+AGG | - | 43368:154418-154437 | MS.gene30654:CDS | 35.0% |
| !! | AATGATGGAAAGAGTGTTGT+TGG | + | 43368:154534-154553 | None:intergenic | 35.0% |
| !! | ATGATTGGTCAATTTGGTGT+TGG | - | 43368:155116-155135 | MS.gene30654:CDS | 35.0% |
| !! | CTAAACTTGCTGATTTGCTT+AGG | - | 43368:156547-156566 | MS.gene30654:CDS | 35.0% |
| !! | TGATGAAATGACTAGCTTGA+AGG | - | 43368:156590-156609 | MS.gene30654:CDS | 35.0% |
| !!! | AAATCAAAGGGTGCTCTTTT+CGG | + | 43368:156210-156229 | None:intergenic | 35.0% |
| AAACTACCTGATCCTCTTTG+AGG | + | 43368:155301-155320 | None:intergenic | 40.0% | |
| ACAAGCCTAATGAAAAGCTC+TGG | + | 43368:154500-154519 | None:intergenic | 40.0% | |
| ACACCTTCTTCTTCCTTCTT+GGG | + | 43368:155943-155962 | None:intergenic | 40.0% | |
| ACTCTTTCCATCATTGACAG+TGG | - | 43368:154539-154558 | MS.gene30654:CDS | 40.0% | |
| AGAAGGTAGTTGTCTCTGAT+AGG | - | 43368:156931-156950 | MS.gene30654:intron | 40.0% | |
| AGTCATTTCATCACCACTCT+TGG | + | 43368:156583-156602 | None:intergenic | 40.0% | |
| ATCTCACGAGAGATGTTAAG+CGG | + | 43368:156363-156382 | None:intergenic | 40.0% | |
| ATGGCATTATGGAGGAATTG+AGG | - | 43368:157099-157118 | MS.gene30654:intron | 40.0% | |
| CAGGGTTATGAAGGAAATCT+TGG | - | 43368:156896-156915 | MS.gene30654:intron | 40.0% | |
| CCTCCATAATGCCATTATCA+GGG | + | 43368:157094-157113 | None:intergenic | 40.0% | |
| CTCTACAAAACGTCCCTAAT+GGG | + | 43368:155404-155423 | None:intergenic | 40.0% | |
| CTCTTTCTCAGTAGTCTTCT+CGG | + | 43368:155896-155915 | None:intergenic | 40.0% | |
| GAAAGCAGCATATTCATCCT+TGG | + | 43368:156094-156113 | None:intergenic | 40.0% | |
| GAATACCTTGGATTCGTGAA+AGG | - | 43368:156315-156334 | MS.gene30654:intron | 40.0% | |
| GATACTGAAGGTGAACAACT+TGG | - | 43368:155251-155270 | MS.gene30654:CDS | 40.0% | |
| GCAACAGAACAAGATCTTGA+AGG | - | 43368:156386-156405 | MS.gene30654:intron | 40.0% | |
| GGAAATCTTGGGAGATAAAG+TGG | - | 43368:156908-156927 | MS.gene30654:intron | 40.0% | |
| GGAGAAGAAGAAATCCTTTG+AGG | - | 43368:156866-156885 | MS.gene30654:intron | 40.0% | |
| GGAGGAGAAGAAGAAAAAAG+AGG | - | 43368:156845-156864 | MS.gene30654:intron | 40.0% | |
| TAAGGAGGTTTCTCATGAGT+GGG | - | 43368:156017-156036 | MS.gene30654:CDS | 40.0% | |
| TCAACAAGCAGAAACCAATC+TGG | - | 43368:156046-156065 | MS.gene30654:intron | 40.0% | |
| TCAATGTCAACATACCAGTG+TGG | - | 43368:154847-154866 | MS.gene30654:CDS | 40.0% | |
| TCATGAAGATAGCCAGAACA+GGG | - | 43368:156524-156543 | MS.gene30654:CDS | 40.0% | |
| TCCTCCATAATGCCATTATC+AGG | + | 43368:157095-157114 | None:intergenic | 40.0% | |
| TCTCTACAAAACGTCCCTAA+TGG | + | 43368:155405-155424 | None:intergenic | 40.0% | |
| TGAAGGTGAACAACTTGGTA+GGG | - | 43368:155256-155275 | MS.gene30654:CDS | 40.0% | |
| TGAGGGACAGCTTGAATTTA+AGG | - | 43368:156170-156189 | MS.gene30654:intron | 40.0% | |
| TGATGTTGATATGCCTCCAT+TGG | - | 43368:157298-157317 | MS.gene30654:CDS | 40.0% | |
| TGGATTCTACTCTGCTTATC+TGG | - | 43368:155136-155155 | MS.gene30654:CDS | 40.0% | |
| TGTGGAAAACTCTCCATTCT+TGG | - | 43368:156680-156699 | MS.gene30654:intron | 40.0% | |
| TTAAGGAGGTTTCTCATGAG+TGG | - | 43368:156016-156035 | MS.gene30654:CDS | 40.0% | |
| TTATGGAGGAATTGAGGAAG+AGG | - | 43368:157105-157124 | MS.gene30654:intron | 40.0% | |
| TTCATGAAGATAGCCAGAAC+AGG | - | 43368:156523-156542 | MS.gene30654:CDS | 40.0% | |
| TTCTCGGTCCAAAGGTAAAT+TGG | + | 43368:155880-155899 | None:intergenic | 40.0% | |
| TTCTTCAGTCTCTCCAAGAA+TGG | + | 43368:156696-156715 | None:intergenic | 40.0% | |
| TTGCTCATCATCATTGTGCT+TGG | + | 43368:155186-155205 | None:intergenic | 40.0% | |
| TTGGTTTCAGCTACAAAGGA+AGG | - | 43368:156798-156817 | MS.gene30654:intron | 40.0% | |
| ! | GAAGTTGGTTAATCTCAGCT+TGG | + | 43368:153757-153776 | None:intergenic | 40.0% |
| ! | GACAACCAGAGCTTTTCATT+AGG | - | 43368:154492-154511 | MS.gene30654:CDS | 40.0% |
| ! | GATCACTCTTTTCCTCAAAG+AGG | - | 43368:155286-155305 | MS.gene30654:intron | 40.0% |
| ! | GTGAAGCATTTCTCTGTTGA+GGG | - | 43368:156153-156172 | MS.gene30654:intron | 40.0% |
| ! | GTGAGCATGATTGGTCAATT+TGG | - | 43368:155110-155129 | MS.gene30654:CDS | 40.0% |
| ! | TCTTTTCCTCAAAGAGGATC+AGG | - | 43368:155292-155311 | MS.gene30654:intron | 40.0% |
| ! | TGGAGGCATATCAACATCAT+CGG | + | 43368:157297-157316 | None:intergenic | 40.0% |
| ! | TGTGAAGCATTTCTCTGTTG+AGG | - | 43368:156152-156171 | MS.gene30654:intron | 40.0% |
| ! | TTCACGAATCCAAGGTATTC+CGG | + | 43368:156315-156334 | None:intergenic | 40.0% |
| !! | AGCATTGATGAGGATGAATC+TGG | - | 43368:157269-157288 | MS.gene30654:CDS | 40.0% |
| !! | ATTGGGTCTTAGCATTGATG+AGG | - | 43368:157259-157278 | MS.gene30654:CDS | 40.0% |
| !! | CAAAGGTGTTTGGTTCATCA+AGG | + | 43368:157214-157233 | None:intergenic | 40.0% |
| !! | CAACCCTGATAATGGCATTA+TGG | - | 43368:157088-157107 | MS.gene30654:intron | 40.0% |
| !! | CGAAGGCTTTGGACAAAATT+AGG | - | 43368:154435-154454 | MS.gene30654:CDS | 40.0% |
| !! | TGTTGATTCTCCATGCTGTT+TGG | - | 43368:156956-156975 | MS.gene30654:intron | 40.0% |
| !!! | CTAAACGGTGTTTTTGGATG+TGG | - | 43368:154408-154427 | MS.gene30654:CDS | 40.0% |
| !!! | GAAACTGCTCTTTTGACTTC+TGG | - | 43368:157182-157201 | MS.gene30654:intron | 40.0% |
| AACCAAACACCTTTGCTGGA+AGG | - | 43368:157219-157238 | MS.gene30654:intron | 45.0% | |
| ACAACTTGGGTACTATTGCG+AGG | - | 43368:155042-155061 | MS.gene30654:CDS | 45.0% | |
| ACAAGAGCCTAACCAATGAC+TGG | - | 43368:156115-156134 | MS.gene30654:intron | 45.0% | |
| AGAGTACGACGGGAAGAAAT+TGG | - | 43368:156779-156798 | MS.gene30654:intron | 45.0% | |
| AGGTACCATTCTACCAAGAG+TGG | - | 43368:156567-156586 | MS.gene30654:CDS | 45.0% | |
| ATACCAGTGTGGTGCTTCAT+AGG | - | 43368:154858-154877 | MS.gene30654:CDS | 45.0% | |
| ATGCCTCCATTGGAAGAAGA+TGG | - | 43368:157308-157327 | MS.gene30654:CDS | 45.0% | |
| CAACACCTTTCACGAATCCA+AGG | + | 43368:156323-156342 | None:intergenic | 45.0% | |
| CAAGAAGGAAGAAGAAGGTG+TGG | - | 43368:155942-155961 | MS.gene30654:CDS | 45.0% | |
| CAAGAGCCTAACCAATGACT+GGG | - | 43368:156116-156135 | MS.gene30654:intron | 45.0% | |
| CAATGAGATCGCTGAGAACA+AGG | - | 43368:156449-156468 | MS.gene30654:intron | 45.0% | |
| CACACCTTCTTCTTCCTTCT+TGG | + | 43368:155944-155963 | None:intergenic | 45.0% | |
| CAGAATGAAAGAAGGGCAGA+AGG | - | 43368:156623-156642 | MS.gene30654:CDS | 45.0% | |
| CATCACCACTCTTGGTAGAA+TGG | + | 43368:156575-156594 | None:intergenic | 45.0% | |
| CATCACTGGAGAGAGCAAAA+AGG | - | 43368:156656-156675 | MS.gene30654:intron | 45.0% | |
| CCTATGAATCCTTCCAGCAA+AGG | + | 43368:157231-157250 | None:intergenic | 45.0% | |
| CCTTTGCTGGAAGGATTCAT+AGG | - | 43368:157228-157247 | MS.gene30654:intron | 45.0% | |
| CTCATCATCATTGTGCTTGG+TGG | + | 43368:155183-155202 | None:intergenic | 45.0% | |
| CTGAAGGTGAACAACTTGGT+AGG | - | 43368:155255-155274 | MS.gene30654:CDS | 45.0% | |
| CTTCTGCCCTTCTTTCATTC+TGG | + | 43368:156625-156644 | None:intergenic | 45.0% | |
| CTTGGAGAGACTGAAGAAGA+GGG | - | 43368:156698-156717 | MS.gene30654:intron | 45.0% | |
| CTTGGGAGATAAAGTGGAGA+AGG | - | 43368:156914-156933 | MS.gene30654:intron | 45.0% | |
| GAAGCTGGATGATGAAACTG+AGG | - | 43368:156824-156843 | MS.gene30654:intron | 45.0% | |
| GAAGGTGAACAACTTGGTAG+GGG | - | 43368:155257-155276 | MS.gene30654:CDS | 45.0% | |
| GATGAACCAAACACCTTTGC+TGG | - | 43368:157215-157234 | MS.gene30654:intron | 45.0% | |
| GCTATCGATGAGTATGCTGT+TGG | - | 43368:156747-156766 | MS.gene30654:intron | 45.0% | |
| GGGCTATGAAGTTCTCTTCA+TGG | - | 43368:156719-156738 | MS.gene30654:intron | 45.0% | |
| TAAGCCAGAAGAGATCACCA+AGG | - | 43368:156074-156093 | MS.gene30654:intron | 45.0% | |
| TACAAAGGAAGGACTGAAGC+TGG | - | 43368:156809-156828 | MS.gene30654:intron | 45.0% | |
| TACGTTTGGGAATCACAAGC+TGG | - | 43368:155206-155225 | MS.gene30654:CDS | 45.0% | |
| TCACCACCATCATTCAGTGT+CGG | + | 43368:154760-154779 | None:intergenic | 45.0% | |
| TCAGCACCATCTTCTTCCAA+TGG | + | 43368:157317-157336 | None:intergenic | 45.0% | |
| TCCAATGCCACTGTCAATGA+TGG | + | 43368:154549-154568 | None:intergenic | 45.0% | |
| TCCATCATTGACAGTGGCAT+TGG | - | 43368:154545-154564 | MS.gene30654:CDS | 45.0% | |
| TCTTGGAGAGACTGAAGAAG+AGG | - | 43368:156697-156716 | MS.gene30654:intron | 45.0% | |
| TGAAGATGATGAGCCCAAGA+AGG | - | 43368:155927-155946 | MS.gene30654:CDS | 45.0% | |
| TTGGAGAGACTGAAGAAGAG+GGG | - | 43368:156699-156718 | MS.gene30654:intron | 45.0% | |
| ! | AATCCTTTGAGGATCTCTGC+AGG | - | 43368:156877-156896 | MS.gene30654:intron | 45.0% |
| ! | ATCCTTTGAGGATCTCTGCA+GGG | - | 43368:156878-156897 | MS.gene30654:intron | 45.0% |
| ! | ATTGGAAGAAGATGGTGCTG+AGG | - | 43368:157316-157335 | MS.gene30654:CDS | 45.0% |
| ! | GACAACTGAAAGAGTACGAC+GGG | - | 43368:156769-156788 | MS.gene30654:intron | 45.0% |
| ! | GATGTGGTTTTCGAAGGCTT+TGG | - | 43368:154424-154443 | MS.gene30654:CDS | 45.0% |
| ! | GGACAACTGAAAGAGTACGA+CGG | - | 43368:156768-156787 | MS.gene30654:intron | 45.0% |
| ! | TCATCCTTGGTGATCTCTTC+TGG | + | 43368:156081-156100 | None:intergenic | 45.0% |
| !! | AGAGTGTTGTTGGCTTTGTC+AGG | + | 43368:154524-154543 | None:intergenic | 45.0% |
| !! | ATACGGATGGACTGCTAACA+TGG | - | 43368:156989-157008 | MS.gene30654:intron | 45.0% |
| !! | ATCCTTCCAGCAAAGGTGTT+TGG | + | 43368:157224-157243 | None:intergenic | 45.0% |
| !! | CCCTGATAATGGCATTATGG+AGG | - | 43368:157091-157110 | MS.gene30654:intron | 45.0% |
| !! | TGTTAGGAGGGTGTTCATCA+TGG | - | 43368:156269-156288 | MS.gene30654:intron | 45.0% |
| AACCCTGCAGAGATCCTCAA+AGG | + | 43368:156883-156902 | None:intergenic | 50.0% | |
| CAAGTGCTCTTCCCAGTCAT+TGG | + | 43368:156130-156149 | None:intergenic | 50.0% | |
| CAATGCCTCCATGAACTCCT+TGG | + | 43368:155075-155094 | None:intergenic | 50.0% | |
| CAGCAAGTTTAGCCCTGTTC+TGG | + | 43368:156539-156558 | None:intergenic | 50.0% | |
| CAGTAGTCTTCTCGGTCCAA+AGG | + | 43368:155888-155907 | None:intergenic | 50.0% | |
| GAGCCCAAGAAGGAAGAAGA+AGG | - | 43368:155937-155956 | MS.gene30654:CDS | 50.0% | |
| GAGCTCATACCGGAATACCT+TGG | - | 43368:156303-156322 | MS.gene30654:intron | 50.0% | |
| GCACCATCTTCTTCCAATGG+AGG | + | 43368:157314-157333 | None:intergenic | 50.0% | |
| GCTGGATGATGAAACTGAGG+AGG | - | 43368:156827-156846 | MS.gene30654:intron | 50.0% | |
| GGAGAGAATCATGAAGGCTC+AGG | - | 43368:157010-157029 | MS.gene30654:intron | 50.0% | |
| GGATCTCTGCAGGGTTATGA+AGG | - | 43368:156887-156906 | MS.gene30654:intron | 50.0% | |
| GTTCATCATGGACAACTGCG+AGG | - | 43368:156281-156300 | MS.gene30654:intron | 50.0% | |
| GTTTGGGAATCACAAGCTGG+TGG | - | 43368:155209-155228 | MS.gene30654:CDS | 50.0% | |
| TGACCGACACTGAATGATGG+TGG | - | 43368:154754-154773 | MS.gene30654:CDS | 50.0% | |
| TGGAACCAAGGAGTTCATGG+AGG | - | 43368:155067-155086 | MS.gene30654:CDS | 50.0% | |
| TGGAGAGAGCAAAAAGGCTG+TGG | - | 43368:156662-156681 | MS.gene30654:intron | 50.0% | |
| TGGTGACCGACACTGAATGA+TGG | - | 43368:154751-154770 | MS.gene30654:CDS | 50.0% | |
| TTGGGTACTATTGCGAGGTC+TGG | - | 43368:155047-155066 | MS.gene30654:CDS | 50.0% | |
| ! | GCTCTTCCCAGTCATTGGTT+AGG | + | 43368:156125-156144 | None:intergenic | 50.0% |
| ! | GGCATTGGAATGACCAAAGC+AGG | - | 43368:154560-154579 | MS.gene30654:CDS | 50.0% |
| ! | GTCTGGAACCAAGGAGTTCA+TGG | - | 43368:155064-155083 | MS.gene30654:CDS | 50.0% |
| ! | TATTGCGAGGTCTGGAACCA+AGG | - | 43368:155055-155074 | MS.gene30654:CDS | 50.0% |
| ! | TCTCCATGCTGTTTGGTGAC+CGG | - | 43368:156963-156982 | MS.gene30654:intron | 50.0% |
| ! | TGTTTGGTGACCGGCGAATA+CGG | - | 43368:156972-156991 | MS.gene30654:intron | 50.0% |
| !! | CAATGACTGGGAAGAGCACT+TGG | - | 43368:156128-156147 | MS.gene30654:intron | 50.0% |
| !! | CGAGGAAGTTGATGAGGACA+AGG | - | 43368:155966-155985 | MS.gene30654:CDS | 50.0% |
| !! | GGTGCTGATGTGAGCATGAT+TGG | - | 43368:155101-155120 | MS.gene30654:CDS | 50.0% |
| !! | TGTGGTCGAGGAAGTTGATG+AGG | - | 43368:155960-155979 | MS.gene30654:CDS | 50.0% |
| AGCAGTCCATCCGTATTCGC+CGG | + | 43368:156985-157004 | None:intergenic | 55.0% | |
| CAACTGCGAGGAGCTCATAC+CGG | - | 43368:156293-156312 | MS.gene30654:intron | 55.0% | |
| CCAGTGTGGTGCTTCATAGG+TGG | - | 43368:154861-154880 | MS.gene30654:CDS | 55.0% | |
| TCATGAAGGCTCAGGCTCTG+AGG | - | 43368:157018-157037 | MS.gene30654:intron | 55.0% | |
| TGCTGAGGAGAGCAAGATGG+AGG | - | 43368:157331-157350 | MS.gene30654:CDS | 55.0% | |
| ! | CATGAAGGCTCAGGCTCTGA+GGG | - | 43368:157019-157038 | MS.gene30654:intron | 55.0% |
| ! | CCACCTATGAAGCACCACAC+TGG | + | 43368:154864-154883 | None:intergenic | 55.0% |
| ! | GGAAGAAGAAGGTGTGGTCG+AGG | - | 43368:155948-155967 | MS.gene30654:CDS | 55.0% |
| ! | TCTGGCTTACGCAGCCAGAT+TGG | + | 43368:156063-156082 | None:intergenic | 55.0% |
| ! | TGGTGCTGAGGAGAGCAAGA+TGG | - | 43368:157328-157347 | MS.gene30654:CDS | 55.0% |
| !! | GGAGTTCATGGAGGCATTGC+AGG | - | 43368:155076-155095 | MS.gene30654:CDS | 55.0% |
| !! | TTCATGGAGGCATTGCAGGC+TGG | - | 43368:155080-155099 | MS.gene30654:CDS | 55.0% |
| TCGCCGGTCACCAAACAGCA+TGG | + | 43368:156969-156988 | None:intergenic | 60.0% | |
| TGGTGACCGGCGAATACGGA+TGG | - | 43368:156976-156995 | MS.gene30654:intron | 60.0% | |
| CTGAGGGACAGCAGCATGGC+AGG | - | 43368:157035-157054 | MS.gene30654:intron | 65.0% | |
| !! | GGCTCTGAGGGACAGCAGCA+TGG | - | 43368:157031-157050 | MS.gene30654:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43368 | gene | 153728 | 157364 | 153728 | ID=MS.gene30654 |
| 43368 | mRNA | 153728 | 157364 | 153728 | ID=MS.gene30654.t1;Parent=MS.gene30654 |
| 43368 | exon | 157242 | 157364 | 157242 | ID=MS.gene30654.t1.exon1;Parent=MS.gene30654.t1 |
| 43368 | CDS | 157242 | 157364 | 157242 | ID=cds.MS.gene30654.t1;Parent=MS.gene30654.t1 |
| 43368 | exon | 156511 | 156652 | 156511 | ID=MS.gene30654.t1.exon2;Parent=MS.gene30654.t1 |
| 43368 | CDS | 156511 | 156652 | 156511 | ID=cds.MS.gene30654.t1;Parent=MS.gene30654.t1 |
| 43368 | exon | 155779 | 156059 | 155779 | ID=MS.gene30654.t1.exon3;Parent=MS.gene30654.t1 |
| 43368 | CDS | 155779 | 156059 | 155779 | ID=cds.MS.gene30654.t1;Parent=MS.gene30654.t1 |
| 43368 | exon | 153728 | 155281 | 153728 | ID=MS.gene30654.t1.exon4;Parent=MS.gene30654.t1 |
| 43368 | CDS | 153728 | 155281 | 153728 | ID=cds.MS.gene30654.t1;Parent=MS.gene30654.t1 |
| Gene Sequence |
| Protein sequence |
