Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62607.t1 | XP_013452304.1 | 99.3 | 699 | 5 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1236.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62607.t1 | P51819 | 93.6 | 699 | 44 | 1 | 1 | 699 | 6 | 703 | 0.0e+00 | 1176.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62607.t1 | A0A072U9J1 | 99.3 | 699 | 5 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1236.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055753 | MS.gene62607 | 0.839154 | 1.88E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62607.t1 | MTR_6g452990 | 99.285 | 699 | 5 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1415 |
| MS.gene62607.t1 | MTR_1g099840 | 92.571 | 700 | 35 | 3 | 1 | 699 | 6 | 689 | 0.0 | 1226 |
| MS.gene62607.t1 | MTR_5g096430 | 88.017 | 701 | 80 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1154 |
| MS.gene62607.t1 | MTR_5g096460 | 88.017 | 701 | 80 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1154 |
| MS.gene62607.t1 | MTR_1g025430 | 48.805 | 711 | 318 | 8 | 2 | 673 | 75 | 778 | 0.0 | 657 |
| MS.gene62607.t1 | MTR_5g097320 | 46.824 | 677 | 338 | 10 | 4 | 668 | 89 | 755 | 0.0 | 596 |
| MS.gene62607.t1 | MTR_0009s0390 | 45.575 | 678 | 344 | 11 | 4 | 668 | 81 | 746 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62607.t1 | AT5G52640 | 91.000 | 700 | 62 | 1 | 1 | 699 | 1 | 700 | 0.0 | 1228 |
| MS.gene62607.t1 | AT5G56000 | 86.143 | 700 | 95 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1160 |
| MS.gene62607.t1 | AT5G56030 | 86.857 | 700 | 90 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1155 |
| MS.gene62607.t1 | AT5G56010 | 86.571 | 700 | 92 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1151 |
| MS.gene62607.t1 | AT5G56030 | 83.402 | 729 | 90 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1141 |
| MS.gene62607.t1 | AT4G24190 | 49.364 | 707 | 318 | 7 | 2 | 673 | 74 | 775 | 0.0 | 653 |
| MS.gene62607.t1 | AT4G24190 | 49.364 | 707 | 318 | 7 | 2 | 673 | 74 | 775 | 0.0 | 652 |
| MS.gene62607.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene62607.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene62607.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene62607.t1 | AT2G04030 | 47.647 | 680 | 327 | 12 | 2 | 668 | 74 | 737 | 0.0 | 606 |
| MS.gene62607.t1 | AT2G04030 | 47.198 | 678 | 330 | 12 | 2 | 668 | 74 | 734 | 0.0 | 596 |
Find 0 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAATTATACGATTTTT+TGG | - | 43367:11253-11272 | MS.gene62607:intron | 10.0% |
| !! | AAATCGTATAATTAATATAC+TGG | + | 43367:11251-11270 | MS.gene62607:intergenic | 15.0% |
| !! | TATAATTATGTTAAAACTAC+CGG | - | 43367:10598-10617 | MS.gene62607:CDS | 15.0% |
| !!! | TGTAAATTTTGTTAAGATTA+TGG | - | 43367:10367-10386 | MS.gene62607:CDS | 15.0% |
| !! | TCAACTAAAATTAACTTCAT+AGG | + | 43367:9679-9698 | MS.gene62607:intergenic | 20.0% |
| !!! | ACGAAGTTTATTTTACTAAA+CGG | - | 43367:10075-10094 | MS.gene62607:CDS | 20.0% |
| !!! | AGTTTTTCAATTACATAACA+AGG | + | 43367:11048-11067 | MS.gene62607:intergenic | 20.0% |
| !!! | TAAAATTGTTTTTATGTCAG+TGG | - | 43367:9649-9668 | MS.gene62607:CDS | 20.0% |
| !!! | TTCTCAAAGAATTTGAAATT+GGG | - | 43367:12180-12199 | MS.gene62607:intron | 20.0% |
| !!! | TTTCTCAAAGAATTTGAAAT+TGG | - | 43367:12179-12198 | MS.gene62607:intron | 20.0% |
| ! | ATTCATAGGATGTTGAAATT+GGG | - | 43367:12924-12943 | MS.gene62607:CDS | 25.0% |
| ! | CAAGAAGAAAAAGAAGATTA+AGG | - | 43367:11681-11700 | MS.gene62607:CDS | 25.0% |
| ! | CATAATTATAATTAACAGCG+AGG | + | 43367:10588-10607 | MS.gene62607:intergenic | 25.0% |
| ! | CTAAACTTTGCTAAAACTAT+TGG | - | 43367:11009-11028 | MS.gene62607:intron | 25.0% |
| ! | GTAACTCAGAGATTAAATTA+GGG | - | 43367:11376-11395 | MS.gene62607:intron | 25.0% |
| ! | TGTAACTCAGAGATTAAATT+AGG | - | 43367:11375-11394 | MS.gene62607:intron | 25.0% |
| !! | AATTTCTGAATGTTCTGTTT+TGG | - | 43367:10679-10698 | MS.gene62607:CDS | 25.0% |
| !! | ACAACATAAAGCTTTATGTT+AGG | - | 43367:11935-11954 | MS.gene62607:intron | 25.0% |
| !! | ATTTCTGAATGTTCTGTTTT+GGG | - | 43367:10680-10699 | MS.gene62607:CDS | 25.0% |
| !! | ATTTTACTAAACGGTGTTTT+TGG | - | 43367:10084-10103 | MS.gene62607:CDS | 25.0% |
| !! | CTTAATCTTCTTTTTCTTCT+TGG | + | 43367:11683-11702 | MS.gene62607:intergenic | 25.0% |
| !!! | AGCATAAGTTTTGATTATGA+AGG | - | 43367:10027-10046 | MS.gene62607:CDS | 25.0% |
| !!! | ATGTTATGCTTTAGTTTTGT+TGG | - | 43367:11115-11134 | MS.gene62607:intron | 25.0% |
| AACAGAACATTCAGAAATTC+AGG | + | 43367:10678-10697 | MS.gene62606:intergenic | 30.0% | |
| AATTATGAGATTACCTGCTT+TGG | + | 43367:10258-10277 | MS.gene62607:intergenic | 30.0% | |
| AGTCTGTAGATGTTTAATGT+TGG | - | 43367:11152-11171 | MS.gene62607:intron | 30.0% | |
| CTAAACGTTCAAGAAAATCA+CGG | + | 43367:10347-10366 | MS.gene62607:intergenic | 30.0% | |
| CTGGTATCAAACAAATCAAA+GGG | + | 43367:11904-11923 | MS.gene62607:intergenic | 30.0% | |
| GAAGAAAAAGAAGATTAAGG+AGG | - | 43367:11684-11703 | MS.gene62607:CDS | 30.0% | |
| GATTCATAGGATGTTGAAAT+TGG | - | 43367:12923-12942 | MS.gene62607:intron | 30.0% | |
| GCATATGTGTGTAAATTAAC+CGG | + | 43367:10620-10639 | MS.gene62607:intergenic | 30.0% | |
| TAAGAATGATAAGTCAGTGA+AGG | - | 43367:12821-12840 | MS.gene62607:intron | 30.0% | |
| TATGTTGTTCATCTTCTTTC+TGG | + | 43367:11923-11942 | MS.gene62607:intergenic | 30.0% | |
| TCTGGTATCAAACAAATCAA+AGG | + | 43367:11905-11924 | MS.gene62607:intergenic | 30.0% | |
| TTAGCTATCCAATTTACCTT+TGG | - | 43367:11551-11570 | MS.gene62607:CDS | 30.0% | |
| TTATGACCAGTTGGAATATT+TGG | - | 43367:11483-11502 | MS.gene62607:CDS | 30.0% | |
| ! | ACATAAAGCTTTATGTTAGG+AGG | - | 43367:11938-11957 | MS.gene62607:intron | 30.0% |
| ! | CATAAAGCTTTATGTTAGGA+GGG | - | 43367:11939-11958 | MS.gene62607:intron | 30.0% |
| ! | CTCATAATTGCATGTTGTTT+CGG | - | 43367:10269-10288 | MS.gene62607:CDS | 30.0% |
| ! | TGATTCATTTTATGACCAGT+TGG | - | 43367:11474-11493 | MS.gene62607:CDS | 30.0% |
| !! | ATTACTTTTGCAACCCATTA+GGG | - | 43367:11070-11089 | MS.gene62607:intron | 30.0% |
| !! | CACTGACTTATCATTCTTAT+CGG | + | 43367:12820-12839 | MS.gene62607:intergenic | 30.0% |
| !! | TATTACTTTTGCAACCCATT+AGG | - | 43367:11069-11088 | MS.gene62607:intron | 30.0% |
| !! | TTAGATTTGGTGAACAACTT+GGG | - | 43367:10711-10730 | MS.gene62607:CDS | 30.0% |
| !! | TTGGGTCTATGTTTTAGATT+TGG | - | 43367:10698-10717 | MS.gene62607:CDS | 30.0% |
| !! | TTTAGATTTGGTGAACAACT+TGG | - | 43367:10710-10729 | MS.gene62607:CDS | 30.0% |
| AAGGACATTTACTACATCAC+TGG | - | 43367:12324-12343 | MS.gene62607:intron | 35.0% | |
| ACAAGATCTTGAAGGTGATT+AGG | - | 43367:12076-12095 | MS.gene62607:intron | 35.0% | |
| ACTGATAAGAGTAAGCTTGA+TGG | - | 43367:10152-10171 | MS.gene62607:CDS | 35.0% | |
| ACTGTTACAAGAGATACTGA+AGG | - | 43367:10921-10940 | MS.gene62607:CDS | 35.0% | |
| AGGGTTATGAAGGAAATCTT+GGG | - | 43367:12579-12598 | MS.gene62607:intron | 35.0% | |
| AGTATCTCTTGTAACAGTGA+AGG | + | 43367:10919-10938 | MS.gene62607:intergenic | 35.0% | |
| AGTTGGAATATTTGGAAGAG+AGG | - | 43367:11491-11510 | MS.gene62607:CDS | 35.0% | |
| ATACGTTCAATCATAAGCGT+TGG | + | 43367:10410-10429 | MS.gene62607:intergenic | 35.0% | |
| ATGGAAATCAACCCTGATAA+TGG | - | 43367:12762-12781 | MS.gene62607:intron | 35.0% | |
| ATGTCACCAGAATGAAAGAA+GGG | - | 43367:12298-12317 | MS.gene62607:CDS | 35.0% | |
| CAACACTTTCTATAGCAACA+AGG | - | 43367:9472-9491 | MS.gene62607:CDS | 35.0% | |
| CATGTCTAGCAAGAAAACTA+TGG | - | 43367:12743-12762 | MS.gene62607:intron | 35.0% | |
| CTTATGATTGAACGTATGTC+TGG | - | 43367:10413-10432 | MS.gene62607:CDS | 35.0% | |
| GCTCTATGATTTCTGTAACT+TGG | - | 43367:11291-11310 | MS.gene62607:intron | 35.0% | |
| TAACATGGAGAGAATCATGA+AGG | - | 43367:12686-12705 | MS.gene62607:intron | 35.0% | |
| TATGTCACCAGAATGAAAGA+AGG | - | 43367:12297-12316 | MS.gene62607:CDS | 35.0% | |
| TCTCTTCCAAATATTCCAAC+TGG | + | 43367:11492-11511 | MS.gene62607:intergenic | 35.0% | |
| TGATGATCAAGCTAAGAAGT+TGG | + | 43367:9454-9473 | MS.gene62607:intergenic | 35.0% | |
| TTTGAGGAAAAGAGTGATCT+TGG | + | 43367:10967-10986 | MS.gene62607:intergenic | 35.0% | |
| TTTGGAAGAGAGGAGAATTA+AGG | - | 43367:11501-11520 | MS.gene62607:CDS | 35.0% | |
| ! | ATGATGATGAGCAATACGTT+TGG | - | 43367:10874-10893 | MS.gene62607:CDS | 35.0% |
| ! | GAAATTGGTTTCAGCTACAA+AGG | - | 43367:12476-12495 | MS.gene62607:intron | 35.0% |
| ! | GAACATGAGTGAGAATTTTC+TGG | - | 43367:11328-11347 | MS.gene62607:intron | 35.0% |
| ! | TCTTTTCGGAACAAAGAGAA+TGG | + | 43367:11878-11897 | MS.gene62607:intergenic | 35.0% |
| ! | TGATGATGAGCAATACGTTT+GGG | - | 43367:10875-10894 | MS.gene62607:CDS | 35.0% |
| ! | TTTCAAAAAGCAGAAGCACA+AGG | + | 43367:12848-12867 | MS.gene62607:intergenic | 35.0% |
| ! | TTTTTGGATGTGGTTTTCGA+AGG | - | 43367:10100-10119 | MS.gene62607:CDS | 35.0% |
| !! | AATGATGGAAAGAGTGTTGT+TGG | + | 43367:10216-10235 | MS.gene62607:intergenic | 35.0% |
| !! | ATGATTGGTCAATTTGGTGT+TGG | - | 43367:10798-10817 | MS.gene62607:CDS | 35.0% |
| !! | CTAAACTTGCTGATTTGCTT+AGG | - | 43367:12229-12248 | MS.gene62607:CDS | 35.0% |
| !! | TGATGAAATGACTAGCTTGA+AGG | - | 43367:12272-12291 | MS.gene62607:CDS | 35.0% |
| !!! | AAATCAAAGGGTGCTCTTTT+CGG | + | 43367:11892-11911 | MS.gene62607:intergenic | 35.0% |
| AAACTACCTGATCCTCTTTG+AGG | + | 43367:10983-11002 | MS.gene62606:intergenic | 40.0% | |
| ACAAGCCTAATGAAAAGCTC+TGG | + | 43367:10182-10201 | MS.gene62607:intergenic | 40.0% | |
| ACACCTTCTTCTTCCTTCTT+GGG | + | 43367:11625-11644 | MS.gene62607:intergenic | 40.0% | |
| ACTCTTTCCATCATTGACAG+TGG | - | 43367:10221-10240 | MS.gene62607:CDS | 40.0% | |
| AGAAGGTAGTTGTCTCTGAT+AGG | - | 43367:12613-12632 | MS.gene62607:intron | 40.0% | |
| AGTCATTTCATCACCACTCT+TGG | + | 43367:12265-12284 | MS.gene62607:intergenic | 40.0% | |
| ATCTCACGAGAGATGTTAAG+CGG | + | 43367:12045-12064 | MS.gene62607:intergenic | 40.0% | |
| ATGGCATTATGGAGGAATTG+AGG | - | 43367:12781-12800 | MS.gene62607:intron | 40.0% | |
| CAGGGTTATGAAGGAAATCT+TGG | - | 43367:12578-12597 | MS.gene62607:intron | 40.0% | |
| CCTCCATAATGCCATTATCA+GGG | + | 43367:12776-12795 | MS.gene62607:intergenic | 40.0% | |
| CTCTACAAAACGTCCCTAAT+GGG | + | 43367:11086-11105 | MS.gene62607:intergenic | 40.0% | |
| CTCTTTCTCAGTAGTCTTCT+CGG | + | 43367:11578-11597 | MS.gene62607:intergenic | 40.0% | |
| GAAAGCAGCATATTCATCCT+TGG | + | 43367:11776-11795 | MS.gene62607:intergenic | 40.0% | |
| GAATACCTTGGATTCGTGAA+AGG | - | 43367:11997-12016 | MS.gene62607:intron | 40.0% | |
| GATACTGAAGGTGAACAACT+TGG | - | 43367:10933-10952 | MS.gene62607:CDS | 40.0% | |
| GCAACAGAACAAGATCTTGA+AGG | - | 43367:12068-12087 | MS.gene62607:intron | 40.0% | |
| GGAAATCTTGGGAGATAAAG+TGG | - | 43367:12590-12609 | MS.gene62607:intron | 40.0% | |
| GGAGAAGAAGAAATCCTTTG+AGG | - | 43367:12548-12567 | MS.gene62607:intron | 40.0% | |
| GGAGGAGAAGAAGAAAAAAG+AGG | - | 43367:12527-12546 | MS.gene62607:intron | 40.0% | |
| TAAGGAGGTTTCTCATGAGT+GGG | - | 43367:11699-11718 | MS.gene62607:CDS | 40.0% | |
| TCAACAAGCAGAAACCAATC+TGG | - | 43367:11728-11747 | MS.gene62607:intron | 40.0% | |
| TCAATGTCAACATACCAGTG+TGG | - | 43367:10529-10548 | MS.gene62607:CDS | 40.0% | |
| TCATGAAGATAGCCAGAACA+GGG | - | 43367:12206-12225 | MS.gene62607:CDS | 40.0% | |
| TCCTCCATAATGCCATTATC+AGG | + | 43367:12777-12796 | MS.gene62607:intergenic | 40.0% | |
| TCTCTACAAAACGTCCCTAA+TGG | + | 43367:11087-11106 | MS.gene62607:intergenic | 40.0% | |
| TGAAGGTGAACAACTTGGTA+GGG | - | 43367:10938-10957 | MS.gene62607:CDS | 40.0% | |
| TGAGGGACAGCTTGAATTTA+AGG | - | 43367:11852-11871 | MS.gene62607:intron | 40.0% | |
| TGATGTTGATATGCCTCCAT+TGG | - | 43367:12980-12999 | MS.gene62607:CDS | 40.0% | |
| TGGATTCTACTCTGCTTATC+TGG | - | 43367:10818-10837 | MS.gene62607:CDS | 40.0% | |
| TGTGGAAAACTCTCCATTCT+TGG | - | 43367:12362-12381 | MS.gene62607:intron | 40.0% | |
| TTAAGGAGGTTTCTCATGAG+TGG | - | 43367:11698-11717 | MS.gene62607:CDS | 40.0% | |
| TTATGGAGGAATTGAGGAAG+AGG | - | 43367:12787-12806 | MS.gene62607:intron | 40.0% | |
| TTCATGAAGATAGCCAGAAC+AGG | - | 43367:12205-12224 | MS.gene62607:CDS | 40.0% | |
| TTCTCGGTCCAAAGGTAAAT+TGG | + | 43367:11562-11581 | MS.gene62607:intergenic | 40.0% | |
| TTCTTCAGTCTCTCCAAGAA+TGG | + | 43367:12378-12397 | MS.gene62607:intergenic | 40.0% | |
| TTGCTCATCATCATTGTGCT+TGG | + | 43367:10868-10887 | MS.gene62607:intergenic | 40.0% | |
| TTGGTTTCAGCTACAAAGGA+AGG | - | 43367:12480-12499 | MS.gene62607:intron | 40.0% | |
| ! | GAAGTTGGTTAATCTCAGCT+TGG | + | 43367:9439-9458 | MS.gene62607:intergenic | 40.0% |
| ! | GACAACCAGAGCTTTTCATT+AGG | - | 43367:10174-10193 | MS.gene62607:CDS | 40.0% |
| ! | GATCACTCTTTTCCTCAAAG+AGG | - | 43367:10968-10987 | MS.gene62607:intron | 40.0% |
| ! | GTGAAGCATTTCTCTGTTGA+GGG | - | 43367:11835-11854 | MS.gene62607:intron | 40.0% |
| ! | GTGAGCATGATTGGTCAATT+TGG | - | 43367:10792-10811 | MS.gene62607:CDS | 40.0% |
| ! | TCTTTTCCTCAAAGAGGATC+AGG | - | 43367:10974-10993 | MS.gene62607:intron | 40.0% |
| ! | TGGAGGCATATCAACATCAT+CGG | + | 43367:12979-12998 | MS.gene62607:intergenic | 40.0% |
| ! | TGTGAAGCATTTCTCTGTTG+AGG | - | 43367:11834-11853 | MS.gene62607:intron | 40.0% |
| ! | TTCACGAATCCAAGGTATTC+CGG | + | 43367:11997-12016 | MS.gene62607:intergenic | 40.0% |
| !! | AGCATTGATGAGGATGAATC+TGG | - | 43367:12951-12970 | MS.gene62607:CDS | 40.0% |
| !! | ATTGGGTCTTAGCATTGATG+AGG | - | 43367:12941-12960 | MS.gene62607:CDS | 40.0% |
| !! | CAAAGGTGTTTGGTTCATCA+AGG | + | 43367:12896-12915 | MS.gene62607:intergenic | 40.0% |
| !! | CAACCCTGATAATGGCATTA+TGG | - | 43367:12770-12789 | MS.gene62607:intron | 40.0% |
| !! | CGAAGGCTTTGGACAAAATT+AGG | - | 43367:10117-10136 | MS.gene62607:CDS | 40.0% |
| !! | TGTTGATTCTCCATGCTGTT+TGG | - | 43367:12638-12657 | MS.gene62607:intron | 40.0% |
| !!! | CTAAACGGTGTTTTTGGATG+TGG | - | 43367:10090-10109 | MS.gene62607:CDS | 40.0% |
| !!! | GAAACTGCTCTTTTGACTTC+TGG | - | 43367:12864-12883 | MS.gene62607:intron | 40.0% |
| AACCAAACACCTTTGCTGGA+AGG | - | 43367:12901-12920 | MS.gene62607:intron | 45.0% | |
| ACAACTTGGGTACTATTGCG+AGG | - | 43367:10724-10743 | MS.gene62607:CDS | 45.0% | |
| ACAAGAGCCTAACCAATGAC+TGG | - | 43367:11797-11816 | MS.gene62607:intron | 45.0% | |
| AGAGTACGACGGGAAGAAAT+TGG | - | 43367:12461-12480 | MS.gene62607:intron | 45.0% | |
| AGGTACCATTCTACCAAGAG+TGG | - | 43367:12249-12268 | MS.gene62607:CDS | 45.0% | |
| ATACCAGTGTGGTGCTTCAT+AGG | - | 43367:10540-10559 | MS.gene62607:CDS | 45.0% | |
| ATGCCTCCATTGGAAGAAGA+TGG | - | 43367:12990-13009 | MS.gene62607:CDS | 45.0% | |
| CAACACCTTTCACGAATCCA+AGG | + | 43367:12005-12024 | MS.gene62607:intergenic | 45.0% | |
| CAAGAAGGAAGAAGAAGGTG+TGG | - | 43367:11624-11643 | MS.gene62607:CDS | 45.0% | |
| CAAGAGCCTAACCAATGACT+GGG | - | 43367:11798-11817 | MS.gene62607:intron | 45.0% | |
| CAATGAGATCGCTGAGAACA+AGG | - | 43367:12131-12150 | MS.gene62607:intron | 45.0% | |
| CACACCTTCTTCTTCCTTCT+TGG | + | 43367:11626-11645 | MS.gene62607:intergenic | 45.0% | |
| CAGAATGAAAGAAGGGCAGA+AGG | - | 43367:12305-12324 | MS.gene62607:CDS | 45.0% | |
| CATCACCACTCTTGGTAGAA+TGG | + | 43367:12257-12276 | MS.gene62607:intergenic | 45.0% | |
| CATCACTGGAGAGAGCAAAA+AGG | - | 43367:12338-12357 | MS.gene62607:intron | 45.0% | |
| CCTATGAATCCTTCCAGCAA+AGG | + | 43367:12913-12932 | MS.gene62607:intergenic | 45.0% | |
| CCTTTGCTGGAAGGATTCAT+AGG | - | 43367:12910-12929 | MS.gene62607:intron | 45.0% | |
| CTCATCATCATTGTGCTTGG+TGG | + | 43367:10865-10884 | MS.gene62607:intergenic | 45.0% | |
| CTGAAGGTGAACAACTTGGT+AGG | - | 43367:10937-10956 | MS.gene62607:CDS | 45.0% | |
| CTTCTGCCCTTCTTTCATTC+TGG | + | 43367:12307-12326 | MS.gene62607:intergenic | 45.0% | |
| CTTGGAGAGACTGAAGAAGA+GGG | - | 43367:12380-12399 | MS.gene62607:intron | 45.0% | |
| CTTGGGAGATAAAGTGGAGA+AGG | - | 43367:12596-12615 | MS.gene62607:intron | 45.0% | |
| GAAGCTGGATGATGAAACTG+AGG | - | 43367:12506-12525 | MS.gene62607:intron | 45.0% | |
| GAAGGTGAACAACTTGGTAG+GGG | - | 43367:10939-10958 | MS.gene62607:CDS | 45.0% | |
| GATGAACCAAACACCTTTGC+TGG | - | 43367:12897-12916 | MS.gene62607:intron | 45.0% | |
| GCTATCGATGAGTATGCTGT+TGG | - | 43367:12429-12448 | MS.gene62607:intron | 45.0% | |
| GGGCTATGAAGTTCTCTTCA+TGG | - | 43367:12401-12420 | MS.gene62607:intron | 45.0% | |
| TAAGCCAGAAGAGATCACCA+AGG | - | 43367:11756-11775 | MS.gene62607:intron | 45.0% | |
| TACAAAGGAAGGACTGAAGC+TGG | - | 43367:12491-12510 | MS.gene62607:intron | 45.0% | |
| TACGTTTGGGAATCACAAGC+TGG | - | 43367:10888-10907 | MS.gene62607:CDS | 45.0% | |
| TCACCACCATCATTCAGTGT+CGG | + | 43367:10442-10461 | MS.gene62607:intergenic | 45.0% | |
| TCAGCACCATCTTCTTCCAA+TGG | + | 43367:12999-13018 | MS.gene62607:intergenic | 45.0% | |
| TCCAATGCCACTGTCAATGA+TGG | + | 43367:10231-10250 | MS.gene62607:intergenic | 45.0% | |
| TCCATCATTGACAGTGGCAT+TGG | - | 43367:10227-10246 | MS.gene62607:CDS | 45.0% | |
| TCTTGGAGAGACTGAAGAAG+AGG | - | 43367:12379-12398 | MS.gene62607:intron | 45.0% | |
| TGAAGATGATGAGCCCAAGA+AGG | - | 43367:11609-11628 | MS.gene62607:CDS | 45.0% | |
| TTGGAGAGACTGAAGAAGAG+GGG | - | 43367:12381-12400 | MS.gene62607:intron | 45.0% | |
| ! | AATCCTTTGAGGATCTCTGC+AGG | - | 43367:12559-12578 | MS.gene62607:intron | 45.0% |
| ! | ATCCTTTGAGGATCTCTGCA+GGG | - | 43367:12560-12579 | MS.gene62607:intron | 45.0% |
| ! | ATTGGAAGAAGATGGTGCTG+AGG | - | 43367:12998-13017 | MS.gene62607:CDS | 45.0% |
| ! | GACAACTGAAAGAGTACGAC+GGG | - | 43367:12451-12470 | MS.gene62607:intron | 45.0% |
| ! | GATGTGGTTTTCGAAGGCTT+TGG | - | 43367:10106-10125 | MS.gene62607:CDS | 45.0% |
| ! | GGACAACTGAAAGAGTACGA+CGG | - | 43367:12450-12469 | MS.gene62607:intron | 45.0% |
| ! | TCATCCTTGGTGATCTCTTC+TGG | + | 43367:11763-11782 | MS.gene62607:intergenic | 45.0% |
| !! | AGAGTGTTGTTGGCTTTGTC+AGG | + | 43367:10206-10225 | MS.gene62607:intergenic | 45.0% |
| !! | ATACGGATGGACTGCTAACA+TGG | - | 43367:12671-12690 | MS.gene62607:intron | 45.0% |
| !! | ATCCTTCCAGCAAAGGTGTT+TGG | + | 43367:12906-12925 | MS.gene62607:intergenic | 45.0% |
| !! | CCCTGATAATGGCATTATGG+AGG | - | 43367:12773-12792 | MS.gene62607:intron | 45.0% |
| !! | TGTTAGGAGGGTGTTCATCA+TGG | - | 43367:11951-11970 | MS.gene62607:intron | 45.0% |
| AACCCTGCAGAGATCCTCAA+AGG | + | 43367:12565-12584 | MS.gene62607:intergenic | 50.0% | |
| CAAGTGCTCTTCCCAGTCAT+TGG | + | 43367:11812-11831 | MS.gene62607:intergenic | 50.0% | |
| CAATGCCTCCATGAACTCCT+TGG | + | 43367:10757-10776 | MS.gene62607:intergenic | 50.0% | |
| CAGCAAGTTTAGCCCTGTTC+TGG | + | 43367:12221-12240 | MS.gene62607:intergenic | 50.0% | |
| CAGTAGTCTTCTCGGTCCAA+AGG | + | 43367:11570-11589 | MS.gene62607:intergenic | 50.0% | |
| GAGCCCAAGAAGGAAGAAGA+AGG | - | 43367:11619-11638 | MS.gene62607:CDS | 50.0% | |
| GAGCTCATACCGGAATACCT+TGG | - | 43367:11985-12004 | MS.gene62607:intron | 50.0% | |
| GCACCATCTTCTTCCAATGG+AGG | + | 43367:12996-13015 | MS.gene62607:intergenic | 50.0% | |
| GCTGGATGATGAAACTGAGG+AGG | - | 43367:12509-12528 | MS.gene62607:intron | 50.0% | |
| GGAGAGAATCATGAAGGCTC+AGG | - | 43367:12692-12711 | MS.gene62607:intron | 50.0% | |
| GGATCTCTGCAGGGTTATGA+AGG | - | 43367:12569-12588 | MS.gene62607:intron | 50.0% | |
| GTTCATCATGGACAACTGCG+AGG | - | 43367:11963-11982 | MS.gene62607:intron | 50.0% | |
| GTTTGGGAATCACAAGCTGG+TGG | - | 43367:10891-10910 | MS.gene62607:CDS | 50.0% | |
| TGACCGACACTGAATGATGG+TGG | - | 43367:10436-10455 | MS.gene62607:CDS | 50.0% | |
| TGGAACCAAGGAGTTCATGG+AGG | - | 43367:10749-10768 | MS.gene62607:CDS | 50.0% | |
| TGGAGAGAGCAAAAAGGCTG+TGG | - | 43367:12344-12363 | MS.gene62607:intron | 50.0% | |
| TGGTGACCGACACTGAATGA+TGG | - | 43367:10433-10452 | MS.gene62607:CDS | 50.0% | |
| TTGGGTACTATTGCGAGGTC+TGG | - | 43367:10729-10748 | MS.gene62607:CDS | 50.0% | |
| ! | GCTCTTCCCAGTCATTGGTT+AGG | + | 43367:11807-11826 | MS.gene62607:intergenic | 50.0% |
| ! | GGCATTGGAATGACCAAAGC+AGG | - | 43367:10242-10261 | MS.gene62607:CDS | 50.0% |
| ! | GTCTGGAACCAAGGAGTTCA+TGG | - | 43367:10746-10765 | MS.gene62607:CDS | 50.0% |
| ! | TATTGCGAGGTCTGGAACCA+AGG | - | 43367:10737-10756 | MS.gene62607:CDS | 50.0% |
| ! | TCTCCATGCTGTTTGGTGAC+CGG | - | 43367:12645-12664 | MS.gene62607:intron | 50.0% |
| ! | TGTTTGGTGACCGGCGAATA+CGG | - | 43367:12654-12673 | MS.gene62607:intron | 50.0% |
| !! | CAATGACTGGGAAGAGCACT+TGG | - | 43367:11810-11829 | MS.gene62607:intron | 50.0% |
| !! | CGAGGAAGTTGATGAGGACA+AGG | - | 43367:11648-11667 | MS.gene62607:CDS | 50.0% |
| !! | GGTGCTGATGTGAGCATGAT+TGG | - | 43367:10783-10802 | MS.gene62607:CDS | 50.0% |
| !! | TGTGGTCGAGGAAGTTGATG+AGG | - | 43367:11642-11661 | MS.gene62607:CDS | 50.0% |
| AGCAGTCCATCCGTATTCGC+CGG | + | 43367:12667-12686 | MS.gene62607:intergenic | 55.0% | |
| CAACTGCGAGGAGCTCATAC+CGG | - | 43367:11975-11994 | MS.gene62607:intron | 55.0% | |
| CCAGTGTGGTGCTTCATAGG+TGG | - | 43367:10543-10562 | MS.gene62607:CDS | 55.0% | |
| TCATGAAGGCTCAGGCTCTG+AGG | - | 43367:12700-12719 | MS.gene62607:intron | 55.0% | |
| TGCTGAGGAGAGCAAGATGG+AGG | - | 43367:13013-13032 | MS.gene62607:CDS | 55.0% | |
| ! | CATGAAGGCTCAGGCTCTGA+GGG | - | 43367:12701-12720 | MS.gene62607:intron | 55.0% |
| ! | CCACCTATGAAGCACCACAC+TGG | + | 43367:10546-10565 | MS.gene62607:intergenic | 55.0% |
| ! | GGAAGAAGAAGGTGTGGTCG+AGG | - | 43367:11630-11649 | MS.gene62607:CDS | 55.0% |
| ! | TCTGGCTTACGCAGCCAGAT+TGG | + | 43367:11745-11764 | MS.gene62607:intergenic | 55.0% |
| ! | TGGTGCTGAGGAGAGCAAGA+TGG | - | 43367:13010-13029 | MS.gene62607:CDS | 55.0% |
| !! | GGAGTTCATGGAGGCATTGC+AGG | - | 43367:10758-10777 | MS.gene62607:CDS | 55.0% |
| !! | TTCATGGAGGCATTGCAGGC+TGG | - | 43367:10762-10781 | MS.gene62607:CDS | 55.0% |
| TCGCCGGTCACCAAACAGCA+TGG | + | 43367:12651-12670 | MS.gene62607:intergenic | 60.0% | |
| TGGTGACCGGCGAATACGGA+TGG | - | 43367:12658-12677 | MS.gene62607:intron | 60.0% | |
| CTGAGGGACAGCAGCATGGC+AGG | - | 43367:12717-12736 | MS.gene62607:intron | 65.0% | |
| !! | GGCTCTGAGGGACAGCAGCA+TGG | - | 43367:12713-12732 | MS.gene62607:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43367 | gene | 9410 | 13046 | 9410 | ID=MS.gene62607 |
| 43367 | mRNA | 9410 | 13046 | 9410 | ID=MS.gene62607.t1;Parent=MS.gene62607 |
| 43367 | exon | 12924 | 13046 | 12924 | ID=MS.gene62607.t1.exon1;Parent=MS.gene62607.t1 |
| 43367 | CDS | 12924 | 13046 | 12924 | ID=cds.MS.gene62607.t1;Parent=MS.gene62607.t1 |
| 43367 | exon | 12193 | 12334 | 12193 | ID=MS.gene62607.t1.exon2;Parent=MS.gene62607.t1 |
| 43367 | CDS | 12193 | 12334 | 12193 | ID=cds.MS.gene62607.t1;Parent=MS.gene62607.t1 |
| 43367 | exon | 11461 | 11741 | 11461 | ID=MS.gene62607.t1.exon3;Parent=MS.gene62607.t1 |
| 43367 | CDS | 11461 | 11741 | 11461 | ID=cds.MS.gene62607.t1;Parent=MS.gene62607.t1 |
| 43367 | exon | 9410 | 10963 | 9410 | ID=MS.gene62607.t1.exon4;Parent=MS.gene62607.t1 |
| 43367 | CDS | 9410 | 10963 | 9410 | ID=cds.MS.gene62607.t1;Parent=MS.gene62607.t1 |
| Gene Sequence |
| Protein sequence |
