Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040499.t1 | XP_013452304.1 | 99.4 | 699 | 4 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1238.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040499.t1 | P51819 | 93.6 | 699 | 44 | 1 | 1 | 699 | 6 | 703 | 0.0e+00 | 1176.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040499.t1 | A0A072U9J1 | 99.4 | 699 | 4 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1238.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040499.t1 | MTR_6g452990 | 99.428 | 699 | 4 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1417 |
| MS.gene040499.t1 | MTR_1g099840 | 92.714 | 700 | 34 | 3 | 1 | 699 | 6 | 689 | 0.0 | 1227 |
| MS.gene040499.t1 | MTR_5g096430 | 88.017 | 701 | 80 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1153 |
| MS.gene040499.t1 | MTR_5g096460 | 88.017 | 701 | 80 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1153 |
| MS.gene040499.t1 | MTR_1g025430 | 48.805 | 711 | 318 | 8 | 2 | 673 | 75 | 778 | 0.0 | 657 |
| MS.gene040499.t1 | MTR_5g097320 | 46.824 | 677 | 338 | 10 | 4 | 668 | 89 | 755 | 0.0 | 596 |
| MS.gene040499.t1 | MTR_0009s0390 | 45.575 | 678 | 344 | 11 | 4 | 668 | 81 | 746 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040499.t1 | AT5G52640 | 91.000 | 700 | 62 | 1 | 1 | 699 | 1 | 700 | 0.0 | 1228 |
| MS.gene040499.t1 | AT5G56000 | 86.143 | 700 | 95 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1160 |
| MS.gene040499.t1 | AT5G56030 | 86.857 | 700 | 90 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1155 |
| MS.gene040499.t1 | AT5G56010 | 86.571 | 700 | 92 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1151 |
| MS.gene040499.t1 | AT5G56030 | 83.402 | 729 | 90 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1140 |
| MS.gene040499.t1 | AT4G24190 | 49.364 | 707 | 318 | 7 | 2 | 673 | 74 | 775 | 0.0 | 653 |
| MS.gene040499.t1 | AT4G24190 | 49.364 | 707 | 318 | 7 | 2 | 673 | 74 | 775 | 0.0 | 652 |
| MS.gene040499.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene040499.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene040499.t1 | AT3G07770 | 47.050 | 678 | 337 | 10 | 4 | 669 | 94 | 761 | 0.0 | 607 |
| MS.gene040499.t1 | AT2G04030 | 47.647 | 680 | 327 | 12 | 2 | 668 | 74 | 737 | 0.0 | 606 |
| MS.gene040499.t1 | AT2G04030 | 47.198 | 678 | 330 | 12 | 2 | 668 | 74 | 734 | 0.0 | 596 |
Find 0 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCATAATAATCAATTAA+TGG | - | 42747:10558-10577 | MS.gene040499:intergenic | 10.0% |
| !! | GTATAATTAATATAATATAC+TGG | - | 42747:11973-11992 | MS.gene040499:intergenic | 10.0% |
| !!! | ATATTAATTATACGTTTTTT+TGG | + | 42747:11980-11999 | MS.gene040499:intron | 10.0% |
| !!! | GATTAATTGATTTTTTTTTG+AGG | + | 42747:10505-10524 | MS.gene040499:intron | 15.0% |
| !!! | TGTAAATTTTGTTAAGATTA+TGG | + | 42747:11119-11138 | MS.gene040499:intron | 15.0% |
| !! | GTTCACATAAGATTAAATTA+GGG | + | 42747:12081-12100 | MS.gene040499:intron | 20.0% |
| !!! | ACGAAGTTTATTTTACTAAA+CGG | + | 42747:10827-10846 | MS.gene040499:intron | 20.0% |
| !!! | AGTTTTTCAATAACATAACA+AGG | - | 42747:11772-11791 | MS.gene040499:intergenic | 20.0% |
| !!! | TGAAATTGATATTTTTGAAC+CGG | + | 42747:11380-11399 | MS.gene040499:intron | 20.0% |
| ! | ATTCATAGGATGTTGAAATT+GGG | + | 42747:13629-13648 | MS.gene040499:CDS | 25.0% |
| ! | CAAGAAGAAAAAGAAGATTA+AGG | + | 42747:12386-12405 | MS.gene040499:CDS | 25.0% |
| ! | CTAAACTTTGCTAAAACTAT+TGG | + | 42747:11733-11752 | MS.gene040499:intron | 25.0% |
| ! | GGTTCACATAAGATTAAATT+AGG | + | 42747:12080-12099 | MS.gene040499:intron | 25.0% |
| ! | TAACAGAATTACAATTAACG+AGG | - | 42747:11317-11336 | MS.gene040499:intergenic | 25.0% |
| ! | TGTAATTCTGTTAAAACTAC+CGG | + | 42747:11324-11343 | MS.gene040499:intron | 25.0% |
| ! | TTATGAACAGTTGGAATATT+TGG | + | 42747:12188-12207 | MS.gene040499:intron | 25.0% |
| !! | AATTTCTGAATGTTCTGTTT+TGG | + | 42747:11403-11422 | MS.gene040499:intron | 25.0% |
| !! | ATTTCTGAATGTTCTGTTTT+GGG | + | 42747:11404-11423 | MS.gene040499:intron | 25.0% |
| !! | ATTTTACTAAACGGTGTTTT+TGG | + | 42747:10836-10855 | MS.gene040499:intron | 25.0% |
| !! | CTTAATCTTCTTTTTCTTCT+TGG | - | 42747:12388-12407 | MS.gene040499:intergenic | 25.0% |
| !! | TGATTCATTTTATGAACAGT+TGG | + | 42747:12179-12198 | MS.gene040499:intron | 25.0% |
| !! | TTCTCAAAGAATTTGAAACT+GGG | + | 42747:12885-12904 | MS.gene040499:CDS | 25.0% |
| !! | TTTCTCAAAGAATTTGAAAC+TGG | + | 42747:12884-12903 | MS.gene040499:CDS | 25.0% |
| !!! | AGCATGAATTTTGATTATGA+AGG | + | 42747:10779-10798 | MS.gene040499:intron | 25.0% |
| !!! | ATGTTATGCTTTAGTTTTGT+TGG | + | 42747:11837-11856 | MS.gene040499:intron | 25.0% |
| AACAGAACATTCAGAAATTC+CGG | - | 42747:11402-11421 | MS.gene040498:intergenic | 30.0% | |
| AAGGACATTTACTACATTAC+TGG | + | 42747:13029-13048 | MS.gene040499:CDS | 30.0% | |
| AATTATGAGATTACCTGCTT+TGG | - | 42747:11010-11029 | MS.gene040499:intergenic | 30.0% | |
| ACAATATCAAGCTCTATGTT+AGG | + | 42747:12640-12659 | MS.gene040499:CDS | 30.0% | |
| ATACATTCAGTGATAAGTGT+TGG | - | 42747:11162-11181 | MS.gene040499:intergenic | 30.0% | |
| CTAAACGTTCAAGAAAATCA+CGG | - | 42747:11099-11118 | MS.gene040499:intergenic | 30.0% | |
| CTCTACAAAATATCCCTAAT+GGG | - | 42747:11810-11829 | MS.gene040499:intergenic | 30.0% | |
| CTGGTATCAAACAAATCAAA+AGG | - | 42747:12609-12628 | MS.gene040499:intergenic | 30.0% | |
| GAAGAAAAAGAAGATTAAGG+AGG | + | 42747:12389-12408 | MS.gene040499:CDS | 30.0% | |
| GAGCATATGTGTAAATTAAC+CGG | - | 42747:11346-11365 | MS.gene040499:intergenic | 30.0% | |
| GATATTGTTCATCTTCTTTC+TGG | - | 42747:12628-12647 | MS.gene040499:intergenic | 30.0% | |
| GATTCATAGGATGTTGAAAT+TGG | + | 42747:13628-13647 | MS.gene040499:CDS | 30.0% | |
| TAAGAATGACAAATCAGTGA+AGG | + | 42747:13526-13545 | MS.gene040499:CDS | 30.0% | |
| TCTCTACAAAATATCCCTAA+TGG | - | 42747:11811-11830 | MS.gene040499:intergenic | 30.0% | |
| ! | ATGATGATGAGCAATATGTT+TGG | + | 42747:11598-11617 | MS.gene040499:CDS | 30.0% |
| ! | CTCATAATTGCATGTTGTTT+CGG | + | 42747:11021-11040 | MS.gene040499:intron | 30.0% |
| ! | TGATGATGAGCAATATGTTT+GGG | + | 42747:11599-11618 | MS.gene040499:CDS | 30.0% |
| ! | TTTTTGGATGTGGTTTTTGA+AGG | + | 42747:10852-10871 | MS.gene040499:intron | 30.0% |
| !! | ATTACTTTTGCAACCCATTA+GGG | + | 42747:11794-11813 | MS.gene040499:intron | 30.0% |
| !! | TATTACTTTTGCAACCCATT+AGG | + | 42747:11793-11812 | MS.gene040499:intron | 30.0% |
| !! | TTAGATTTGGTGAACAACTT+GGG | + | 42747:11435-11454 | MS.gene040499:intron | 30.0% |
| !! | TTGGGTCTATGTTTTAGATT+TGG | + | 42747:11422-11441 | MS.gene040499:intron | 30.0% |
| !! | TTTAGATTTGGTGAACAACT+TGG | + | 42747:11434-11453 | MS.gene040499:intron | 30.0% |
| ACAAGATCTTGAAGGTGATT+AGG | + | 42747:12781-12800 | MS.gene040499:CDS | 35.0% | |
| ACTGATAAGAGTAAGCTTGA+TGG | + | 42747:10904-10923 | MS.gene040499:CDS | 35.0% | |
| ACTGTTACAAGAGATACTGA+AGG | + | 42747:11645-11664 | MS.gene040499:CDS | 35.0% | |
| AGTATCTCTTGTAACAGTGA+AGG | - | 42747:11643-11662 | MS.gene040499:intergenic | 35.0% | |
| AGTTGGAATATTTGGAAGAG+AGG | + | 42747:12196-12215 | MS.gene040499:intron | 35.0% | |
| ATATCAAGCTCTATGTTAGG+AGG | + | 42747:12643-12662 | MS.gene040499:CDS | 35.0% | |
| ATGGAAATCAACCCTGATAA+CGG | + | 42747:13467-13486 | MS.gene040499:CDS | 35.0% | |
| ATGTCACCAGAATGAAAGAA+GGG | + | 42747:13003-13022 | MS.gene040499:CDS | 35.0% | |
| CAACACTTTCTATAGCAACA+AGG | + | 42747:10314-10333 | MS.gene040499:CDS | 35.0% | |
| CATGTCTAGCAAGAAAACTA+TGG | + | 42747:13448-13467 | MS.gene040499:CDS | 35.0% | |
| CATTACTGGAGAAAGCAAAA+AGG | + | 42747:13043-13062 | MS.gene040499:CDS | 35.0% | |
| CATTCTCTTTGTTCCGAAAA+GGG | + | 42747:12581-12600 | MS.gene040499:CDS | 35.0% | |
| CTTATCACTGAATGTATGTC+TGG | + | 42747:11165-11184 | MS.gene040499:intron | 35.0% | |
| GCTCTATGATTTCTGTAACT+TGG | + | 42747:12018-12037 | MS.gene040499:intron | 35.0% | |
| GTGAAACATTTCTCTGTTGA+GGG | + | 42747:12540-12559 | MS.gene040499:CDS | 35.0% | |
| TAACATGGAGAGAATCATGA+AGG | + | 42747:13391-13410 | MS.gene040499:CDS | 35.0% | |
| TATCAAGCTCTATGTTAGGA+GGG | + | 42747:12644-12663 | MS.gene040499:CDS | 35.0% | |
| TATGTCACCAGAATGAAAGA+AGG | + | 42747:13002-13021 | MS.gene040499:CDS | 35.0% | |
| TGATGATCAAGCTAAGAAGT+TGG | - | 42747:10296-10315 | MS.gene040499:intergenic | 35.0% | |
| TGTGAAACATTTCTCTGTTG+AGG | + | 42747:12539-12558 | MS.gene040499:CDS | 35.0% | |
| TTTGAGGAAAAGAGTGATCT+TGG | - | 42747:11691-11710 | MS.gene040499:intergenic | 35.0% | |
| TTTGGAAGAGAGGAGAATTA+AGG | + | 42747:12206-12225 | MS.gene040499:CDS | 35.0% | |
| ! | AGAGTATGACGGAAAGAAAT+TGG | + | 42747:13166-13185 | MS.gene040499:CDS | 35.0% |
| ! | ATGAGTGAGAATTTTCTGGA+AGG | + | 42747:12059-12078 | MS.gene040499:intron | 35.0% |
| ! | GAAATTGGTTTCAGCTACAA+AGG | + | 42747:13181-13200 | MS.gene040499:CDS | 35.0% |
| ! | GAACATGAGTGAGAATTTTC+TGG | + | 42747:12055-12074 | MS.gene040499:intron | 35.0% |
| ! | TTTCAAAAAGCAGAAGCACA+AGG | - | 42747:13553-13572 | MS.gene040499:intergenic | 35.0% |
| !! | AATGATGGAAAGAGTGTTGT+TGG | - | 42747:10968-10987 | MS.gene040499:intergenic | 35.0% |
| !! | ATGATTGGTCAATTTGGTGT+TGG | + | 42747:11522-11541 | MS.gene040499:CDS | 35.0% |
| !! | CAAAAGTGTTTGGTTCATCA+AGG | - | 42747:13601-13620 | MS.gene040499:intergenic | 35.0% |
| !! | TGAAGGCTTTGGACAAAATT+CGG | + | 42747:10869-10888 | MS.gene040499:intron | 35.0% |
| !! | TGATGAAATGACTAGCTTGA+AGG | + | 42747:12977-12996 | MS.gene040499:CDS | 35.0% |
| !!! | AAATCAAAAGGTGCCCTTTT+CGG | - | 42747:12597-12616 | MS.gene040499:intergenic | 35.0% |
| AAACTACCTGATCCTCTTTG+AGG | - | 42747:11707-11726 | MS.gene040498:intergenic | 40.0% | |
| ACAAGCCTAATGAAAAGCTC+TGG | - | 42747:10934-10953 | MS.gene040499:intergenic | 40.0% | |
| ACACCTTCTTCTTCCTTCTT+GGG | - | 42747:12330-12349 | MS.gene040499:intergenic | 40.0% | |
| ACGGCATTATGGAAGAGTTA+AGG | + | 42747:13486-13505 | MS.gene040499:CDS | 40.0% | |
| ACTCTTTCCATCATTGACAG+TGG | + | 42747:10973-10992 | MS.gene040499:CDS | 40.0% | |
| AGCATAGATGAGGATGAAAC+TGG | + | 42747:13656-13675 | MS.gene040499:CDS | 40.0% | |
| AGGGTCATGAAGGAAATCTT+GGG | + | 42747:13284-13303 | MS.gene040499:CDS | 40.0% | |
| AGTCATTTCATCACCACTCT+TGG | - | 42747:12970-12989 | MS.gene040499:intergenic | 40.0% | |
| ATCTCACGAGAGATGTTAAG+CGG | - | 42747:12750-12769 | MS.gene040499:intergenic | 40.0% | |
| ATTGGGTCTTAGCATAGATG+AGG | + | 42747:13646-13665 | MS.gene040499:CDS | 40.0% | |
| CAATGAGATTGCTGAGAACA+AGG | + | 42747:12836-12855 | MS.gene040499:CDS | 40.0% | |
| CCATTCTCTTTGTTCCGAAA+AGG | + | 42747:12580-12599 | MS.gene040499:CDS | 40.0% | |
| CTTCCATAATGCCGTTATCA+GGG | - | 42747:13481-13500 | MS.gene040499:intergenic | 40.0% | |
| GAAAGCAGCATATTCATCCT+TGG | - | 42747:12481-12500 | MS.gene040499:intergenic | 40.0% | |
| GAATACCTTGGATTCGTGAA+AGG | + | 42747:12702-12721 | MS.gene040499:CDS | 40.0% | |
| GATACTGAAGGTGAACAACT+TGG | + | 42747:11657-11676 | MS.gene040499:CDS | 40.0% | |
| GCAACAGAACAAGATCTTGA+AGG | + | 42747:12773-12792 | MS.gene040499:CDS | 40.0% | |
| GCTATTGATGAGTATGCTGT+TGG | + | 42747:13134-13153 | MS.gene040499:CDS | 40.0% | |
| GGAAATCTTGGGAGATAAAG+TGG | + | 42747:13295-13314 | MS.gene040499:CDS | 40.0% | |
| GGAGAAGAAGAAATCCTTTG+AGG | + | 42747:13253-13272 | MS.gene040499:CDS | 40.0% | |
| GGAGGAGAAGAAGAAAAAAG+AGG | + | 42747:13232-13251 | MS.gene040499:CDS | 40.0% | |
| TAAGGAGGTTTCTCATGAGT+GGG | + | 42747:12404-12423 | MS.gene040499:CDS | 40.0% | |
| TACAAAGGAAGGATTGAAGC+TGG | + | 42747:13196-13215 | MS.gene040499:CDS | 40.0% | |
| TATGTTTGGGAATCACAAGC+TGG | + | 42747:11612-11631 | MS.gene040499:CDS | 40.0% | |
| TCAATGTCAACATACCAGTG+TGG | + | 42747:11258-11277 | MS.gene040499:intron | 40.0% | |
| TCATGAAGATAGCCAGAACA+GGG | + | 42747:12911-12930 | MS.gene040499:CDS | 40.0% | |
| TCTCAGTCCAAAGGTAGATT+GGG | - | 42747:12266-12285 | MS.gene040499:intergenic | 40.0% | |
| TCTTCCATAATGCCGTTATC+AGG | - | 42747:13482-13501 | MS.gene040499:intergenic | 40.0% | |
| TGAAGGTGAACAACTTGGTA+GGG | + | 42747:11662-11681 | MS.gene040499:CDS | 40.0% | |
| TGATGTTGATATGCCTCCAT+TGG | + | 42747:13685-13704 | MS.gene040499:CDS | 40.0% | |
| TGGATTCTACTCTGCTTATC+TGG | + | 42747:11542-11561 | MS.gene040499:CDS | 40.0% | |
| TTAAGGAGGTTTCTCATGAG+TGG | + | 42747:12403-12422 | MS.gene040499:CDS | 40.0% | |
| TTAGCTACCCAATCTACCTT+TGG | + | 42747:12256-12275 | MS.gene040499:CDS | 40.0% | |
| TTCATGAAGATAGCCAGAAC+AGG | + | 42747:12910-12929 | MS.gene040499:CDS | 40.0% | |
| TTCTCAGTCCAAAGGTAGAT+TGG | - | 42747:12267-12286 | MS.gene040499:intergenic | 40.0% | |
| TTCTTCAGTCTCTCCAAGAA+TGG | - | 42747:13083-13102 | MS.gene040499:intergenic | 40.0% | |
| TTGGTTTCAGCTACAAAGGA+AGG | + | 42747:13185-13204 | MS.gene040499:CDS | 40.0% | |
| ! | AACCAAACACTTTTGCTGGA+AGG | + | 42747:13606-13625 | MS.gene040499:CDS | 40.0% |
| ! | CCTTTTCGGAACAAAGAGAA+TGG | - | 42747:12583-12602 | MS.gene040499:intergenic | 40.0% |
| ! | CTTTTGCTGGAAGGATTCAT+AGG | + | 42747:13615-13634 | MS.gene040499:CDS | 40.0% |
| ! | GAAGTTGGTTAATCTCAGCT+TGG | - | 42747:10281-10300 | MS.gene040499:intergenic | 40.0% |
| ! | GACAACCAGAGCTTTTCATT+AGG | + | 42747:10926-10945 | MS.gene040499:CDS | 40.0% |
| ! | GATCACTCTTTTCCTCAAAG+AGG | + | 42747:11692-11711 | MS.gene040499:CDS | 40.0% |
| ! | GATGAACCAAACACTTTTGC+TGG | + | 42747:13602-13621 | MS.gene040499:CDS | 40.0% |
| ! | GGACAACTGAAAGAGTATGA+CGG | + | 42747:13155-13174 | MS.gene040499:CDS | 40.0% |
| ! | GTGAGCATGATTGGTCAATT+TGG | + | 42747:11516-11535 | MS.gene040499:CDS | 40.0% |
| ! | TCTTTTCCTCAAAGAGGATC+AGG | + | 42747:11698-11717 | MS.gene040499:CDS | 40.0% |
| ! | TGGAGGCATATCAACATCAT+CGG | - | 42747:13684-13703 | MS.gene040499:intergenic | 40.0% |
| ! | TTCACGAATCCAAGGTATTC+TGG | - | 42747:12702-12721 | MS.gene040499:intergenic | 40.0% |
| !! | ATCCTTCCAGCAAAAGTGTT+TGG | - | 42747:13611-13630 | MS.gene040499:intergenic | 40.0% |
| !! | CTAAACTTGCTGATTTGCTC+AGG | + | 42747:12934-12953 | MS.gene040499:CDS | 40.0% |
| !! | GATGTGGTTTTTGAAGGCTT+TGG | + | 42747:10858-10877 | MS.gene040499:intron | 40.0% |
| !! | TGTTGATTCTCCATGCTGTT+TGG | + | 42747:13343-13362 | MS.gene040499:CDS | 40.0% |
| !!! | CTAAACGGTGTTTTTGGATG+TGG | + | 42747:10842-10861 | MS.gene040499:intron | 40.0% |
| !!! | GAAACTGCTCTTTTGACTTC+TGG | + | 42747:13569-13588 | MS.gene040499:CDS | 40.0% |
| ACAACTTGGGTACTATTGCG+AGG | + | 42747:11448-11467 | MS.gene040499:CDS | 45.0% | |
| ACAAGAGCCTAACCAATGAC+TGG | + | 42747:12502-12521 | MS.gene040499:CDS | 45.0% | |
| AGGTACCATTCTACCAAGAG+TGG | + | 42747:12954-12973 | MS.gene040499:CDS | 45.0% | |
| ATACCAGTGTGGTGCTTCAT+AGG | + | 42747:11269-11288 | MS.gene040499:intron | 45.0% | |
| ATGCCTCCATTGGAAGAAGA+TGG | + | 42747:13695-13714 | MS.gene040499:CDS | 45.0% | |
| CAACACCTTTCACGAATCCA+AGG | - | 42747:12710-12729 | MS.gene040499:intergenic | 45.0% | |
| CAAGAAGGAAGAAGAAGGTG+TGG | + | 42747:12329-12348 | MS.gene040499:CDS | 45.0% | |
| CAAGAGCCTAACCAATGACT+GGG | + | 42747:12503-12522 | MS.gene040499:CDS | 45.0% | |
| CAAGTGTTCTTCCCAGTCAT+TGG | - | 42747:12517-12536 | MS.gene040499:intergenic | 45.0% | |
| CAATGACTGGGAAGAACACT+TGG | + | 42747:12515-12534 | MS.gene040499:CDS | 45.0% | |
| CACACCTTCTTCTTCCTTCT+TGG | - | 42747:12331-12350 | MS.gene040499:intergenic | 45.0% | |
| CAGAATGAAAGAAGGGCAGA+AGG | + | 42747:13010-13029 | MS.gene040499:CDS | 45.0% | |
| CAGGGTCATGAAGGAAATCT+TGG | + | 42747:13283-13302 | MS.gene040499:CDS | 45.0% | |
| CAGTAGTCTTCTCAGTCCAA+AGG | - | 42747:12275-12294 | MS.gene040499:intergenic | 45.0% | |
| CATCACCACTCTTGGTAGAA+TGG | - | 42747:12962-12981 | MS.gene040499:intergenic | 45.0% | |
| CTCATCATCATTGTGCTTCG+TGG | - | 42747:11589-11608 | MS.gene040499:intergenic | 45.0% | |
| CTGAAGGTGAACAACTTGGT+AGG | + | 42747:11661-11680 | MS.gene040499:CDS | 45.0% | |
| CTTCTGCCCTTCTTTCATTC+TGG | - | 42747:13012-13031 | MS.gene040499:intergenic | 45.0% | |
| CTTGGAGAGACTGAAGAAGA+GGG | + | 42747:13085-13104 | MS.gene040499:CDS | 45.0% | |
| CTTGGGAGATAAAGTGGAGA+AGG | + | 42747:13301-13320 | MS.gene040499:CDS | 45.0% | |
| GAAGCTGGATGATGAAACTG+AGG | + | 42747:13211-13230 | MS.gene040499:CDS | 45.0% | |
| GAAGGTGAACAACTTGGTAG+GGG | + | 42747:11663-11682 | MS.gene040499:CDS | 45.0% | |
| GAGCTCATACCAGAATACCT+TGG | + | 42747:12690-12709 | MS.gene040499:CDS | 45.0% | |
| GGGCTATGAAGTTCTCTTCA+TGG | + | 42747:13106-13125 | MS.gene040499:CDS | 45.0% | |
| TCAACAAGCAGAAGCCTATC+TGG | + | 42747:12433-12452 | MS.gene040499:CDS | 45.0% | |
| TCACCACCATTGTTCAGTGT+CGG | - | 42747:11194-11213 | MS.gene040499:intergenic | 45.0% | |
| TCAGCACCATCTTCTTCCAA+TGG | - | 42747:13704-13723 | MS.gene040499:intergenic | 45.0% | |
| TCCAATGCCACTGTCAATGA+TGG | - | 42747:10983-11002 | MS.gene040499:intergenic | 45.0% | |
| TCCATCATTGACAGTGGCAT+TGG | + | 42747:10979-10998 | MS.gene040499:CDS | 45.0% | |
| TCTTGGAGAGACTGAAGAAG+AGG | + | 42747:13084-13103 | MS.gene040499:CDS | 45.0% | |
| TGAAGATGATGAGCCCAAGA+AGG | + | 42747:12314-12333 | MS.gene040499:CDS | 45.0% | |
| TGAGGGACAGCTTGAATTCA+AGG | + | 42747:12557-12576 | MS.gene040499:CDS | 45.0% | |
| TGGAGAAAGCAAAAAGGCTG+TGG | + | 42747:13049-13068 | MS.gene040499:CDS | 45.0% | |
| TGTGGAGAACTCTCCATTCT+TGG | + | 42747:13067-13086 | MS.gene040499:CDS | 45.0% | |
| TTGGAGAGACTGAAGAAGAG+GGG | + | 42747:13086-13105 | MS.gene040499:CDS | 45.0% | |
| ! | AATCCTTTGAGGATCTCTGC+AGG | + | 42747:13264-13283 | MS.gene040499:CDS | 45.0% |
| ! | ATCCTTTGAGGATCTCTGCA+GGG | + | 42747:13265-13284 | MS.gene040499:CDS | 45.0% |
| ! | ATTGGAAGAAGATGGTGCTG+AGG | + | 42747:13703-13722 | MS.gene040499:CDS | 45.0% |
| ! | GTTCTTCCCAGTCATTGGTT+AGG | - | 42747:12512-12531 | MS.gene040499:intergenic | 45.0% |
| ! | TCATCCTTGGTGATCTCTTC+TGG | - | 42747:12468-12487 | MS.gene040499:intergenic | 45.0% |
| ! | TGTTTGGTGACTGGCGAATA+CGG | + | 42747:13359-13378 | MS.gene040499:CDS | 45.0% |
| !! | AGAGTGTTGTTGGCTTTGTC+AGG | - | 42747:10958-10977 | MS.gene040499:intergenic | 45.0% |
| !! | ATACGGATGGACTGCTAACA+TGG | + | 42747:13376-13395 | MS.gene040499:CDS | 45.0% |
| !! | CAACCCTGATAACGGCATTA+TGG | + | 42747:13475-13494 | MS.gene040499:CDS | 45.0% |
| !! | TGTTAGGAGGGTGTTCATCA+TGG | + | 42747:12656-12675 | MS.gene040499:CDS | 45.0% |
| AGAAGGTGGTTGTCTCTGAC+AGG | + | 42747:13318-13337 | MS.gene040499:CDS | 50.0% | |
| CAAGCCAGAAGAGATCACCA+AGG | + | 42747:12461-12480 | MS.gene040499:CDS | 50.0% | |
| CAATGCCTCCATGAACTCCT+TGG | - | 42747:11481-11500 | MS.gene040499:intergenic | 50.0% | |
| CAGCAAGTTTAGCCCTGTTC+TGG | - | 42747:12926-12945 | MS.gene040499:intergenic | 50.0% | |
| GAGCCCAAGAAGGAAGAAGA+AGG | + | 42747:12324-12343 | MS.gene040499:CDS | 50.0% | |
| GCACCATCTTCTTCCAATGG+AGG | - | 42747:13701-13720 | MS.gene040499:intergenic | 50.0% | |
| GCTGGATGATGAAACTGAGG+AGG | + | 42747:13214-13233 | MS.gene040499:CDS | 50.0% | |
| GGAGAGAATCATGAAGGCTC+AGG | + | 42747:13397-13416 | MS.gene040499:CDS | 50.0% | |
| GGGAGATAAAGTGGAGAAGG+TGG | + | 42747:13304-13323 | MS.gene040499:CDS | 50.0% | |
| GTTCATCATGGACAACTGCG+AGG | + | 42747:12668-12687 | MS.gene040499:CDS | 50.0% | |
| GTTTGGGAATCACAAGCTGG+TGG | + | 42747:11615-11634 | MS.gene040499:CDS | 50.0% | |
| TGGAACCAAGGAGTTCATGG+AGG | + | 42747:11473-11492 | MS.gene040499:CDS | 50.0% | |
| TGGTGTCCGACACTGAACAA+TGG | + | 42747:11185-11204 | MS.gene040499:intron | 50.0% | |
| TGTCCGACACTGAACAATGG+TGG | + | 42747:11188-11207 | MS.gene040499:intron | 50.0% | |
| TTGGGTACTATTGCGAGGTC+TGG | + | 42747:11453-11472 | MS.gene040499:CDS | 50.0% | |
| ! | GGCATTGGAATGACCAAAGC+AGG | + | 42747:10994-11013 | MS.gene040499:CDS | 50.0% |
| ! | GTCTGGAACCAAGGAGTTCA+TGG | + | 42747:11470-11489 | MS.gene040499:CDS | 50.0% |
| ! | TATTGCGAGGTCTGGAACCA+AGG | + | 42747:11461-11480 | MS.gene040499:CDS | 50.0% |
| ! | TCTCCATGCTGTTTGGTGAC+TGG | + | 42747:13350-13369 | MS.gene040499:CDS | 50.0% |
| !! | CGAGGAAGTTGATGAGGACA+AGG | + | 42747:12353-12372 | MS.gene040499:CDS | 50.0% |
| !! | GGTGCTGATGTGAGCATGAT+TGG | + | 42747:11507-11526 | MS.gene040499:CDS | 50.0% |
| !! | TGTGGTCGAGGAAGTTGATG+AGG | + | 42747:12347-12366 | MS.gene040499:CDS | 50.0% |
| CCAGTGTGGTGCTTCATAGG+TGG | + | 42747:11272-11291 | MS.gene040499:intron | 55.0% | |
| GACCCTGCAGAGATCCTCAA+AGG | - | 42747:13270-13289 | MS.gene040499:intergenic | 55.0% | |
| GGATCTCTGCAGGGTCATGA+AGG | + | 42747:13274-13293 | MS.gene040499:CDS | 55.0% | |
| TCATGAAGGCTCAGGCTCTG+AGG | + | 42747:13405-13424 | MS.gene040499:CDS | 55.0% | |
| TCGCCAGTCACCAAACAGCA+TGG | - | 42747:13356-13375 | MS.gene040499:intergenic | 55.0% | |
| TGCTGAGGAGAGCAAGATGG+AGG | + | 42747:13718-13737 | MS.gene040499:CDS | 55.0% | |
| TGGTGACTGGCGAATACGGA+TGG | + | 42747:13363-13382 | MS.gene040499:CDS | 55.0% | |
| ! | CATGAAGGCTCAGGCTCTGA+GGG | + | 42747:13406-13425 | MS.gene040499:CDS | 55.0% |
| ! | CCACCTATGAAGCACCACAC+TGG | - | 42747:11275-11294 | MS.gene040499:intergenic | 55.0% |
| ! | GGAAGAAGAAGGTGTGGTCG+AGG | + | 42747:12335-12354 | MS.gene040499:CDS | 55.0% |
| ! | TCTGGCTTGCGAAGCCAGAT+AGG | - | 42747:12450-12469 | MS.gene040499:intergenic | 55.0% |
| ! | TGGTGCTGAGGAGAGCAAGA+TGG | + | 42747:13715-13734 | MS.gene040499:CDS | 55.0% |
| !! | GGAGTTCATGGAGGCATTGC+AGG | + | 42747:11482-11501 | MS.gene040499:CDS | 55.0% |
| !! | TTCATGGAGGCATTGCAGGC+AGG | + | 42747:11486-11505 | MS.gene040499:CDS | 55.0% |
| CTGAGGGACAGCAGCATGGC+TGG | + | 42747:13422-13441 | MS.gene040499:CDS | 65.0% | |
| !! | GGCTCTGAGGGACAGCAGCA+TGG | + | 42747:13418-13437 | MS.gene040499:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42747 | gene | 10252 | 13751 | 10252 | ID=MS.gene040499 |
| 42747 | mRNA | 10252 | 13751 | 10252 | ID=MS.gene040499.t1;Parent=MS.gene040499 |
| 42747 | exon | 10252 | 10374 | 10252 | ID=MS.gene040499.t1.exon1;Parent=MS.gene040499.t1 |
| 42747 | CDS | 10252 | 10374 | 10252 | ID=cds.MS.gene040499.t1;Parent=MS.gene040499.t1 |
| 42747 | exon | 10874 | 11015 | 10874 | ID=MS.gene040499.t1.exon2;Parent=MS.gene040499.t1 |
| 42747 | CDS | 10874 | 11015 | 10874 | ID=cds.MS.gene040499.t1;Parent=MS.gene040499.t1 |
| 42747 | exon | 11439 | 11719 | 11439 | ID=MS.gene040499.t1.exon3;Parent=MS.gene040499.t1 |
| 42747 | CDS | 11439 | 11719 | 11439 | ID=cds.MS.gene040499.t1;Parent=MS.gene040499.t1 |
| 42747 | exon | 12198 | 13751 | 12198 | ID=MS.gene040499.t1.exon4;Parent=MS.gene040499.t1 |
| 42747 | CDS | 12198 | 13751 | 12198 | ID=cds.MS.gene040499.t1;Parent=MS.gene040499.t1 |
| Gene Sequence |
| Protein sequence |
