Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49154.t1 | XP_024627140.1 | 98.7 | 699 | 8 | 1 | 1 | 698 | 6 | 704 | 0.00E+00 | 1227.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49154.t1 | P51819 | 95.0 | 698 | 35 | 0 | 1 | 698 | 6 | 703 | 0.0e+00 | 1186.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49154.t1 | A0A2K3MY81 | 97.0 | 698 | 21 | 0 | 1 | 698 | 6 | 703 | 0.0e+00 | 1217.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061124 | MS.gene49154 | 0.856061 | 4.15E-62 | -1.69E-46 |
| MS.gene061126 | MS.gene49154 | 0.853091 | 3.00E-61 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49154.t1 | MTR_1g099840 | 96.423 | 699 | 9 | 2 | 1 | 698 | 6 | 689 | 0.0 | 1356 |
| MS.gene49154.t1 | MTR_6g452990 | 95.136 | 699 | 33 | 1 | 1 | 698 | 1 | 699 | 0.0 | 1271 |
| MS.gene49154.t1 | MTR_5g096430 | 87.143 | 700 | 87 | 2 | 1 | 698 | 1 | 699 | 0.0 | 1147 |
| MS.gene49154.t1 | MTR_5g096460 | 87.143 | 700 | 87 | 2 | 1 | 698 | 1 | 699 | 0.0 | 1147 |
| MS.gene49154.t1 | MTR_1g025430 | 49.364 | 707 | 312 | 8 | 3 | 670 | 76 | 775 | 0.0 | 657 |
| MS.gene49154.t1 | MTR_5g097320 | 47.337 | 676 | 336 | 10 | 4 | 668 | 89 | 755 | 0.0 | 596 |
| MS.gene49154.t1 | MTR_0009s0390 | 44.915 | 708 | 363 | 10 | 4 | 697 | 81 | 775 | 0.0 | 575 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49154.t1 | AT5G52640 | 89.286 | 700 | 73 | 2 | 1 | 698 | 1 | 700 | 0.0 | 1206 |
| MS.gene49154.t1 | AT5G56000 | 84.429 | 700 | 106 | 3 | 1 | 698 | 1 | 699 | 0.0 | 1134 |
| MS.gene49154.t1 | AT5G56030 | 85.286 | 700 | 100 | 3 | 1 | 698 | 1 | 699 | 0.0 | 1128 |
| MS.gene49154.t1 | AT5G56010 | 85.143 | 700 | 101 | 3 | 1 | 698 | 1 | 699 | 0.0 | 1125 |
| MS.gene49154.t1 | AT5G56030 | 81.893 | 729 | 100 | 4 | 1 | 698 | 1 | 728 | 0.0 | 1113 |
| MS.gene49154.t1 | AT4G24190 | 49.929 | 705 | 309 | 8 | 3 | 670 | 75 | 772 | 0.0 | 648 |
| MS.gene49154.t1 | AT4G24190 | 49.929 | 705 | 309 | 8 | 3 | 670 | 75 | 772 | 0.0 | 648 |
| MS.gene49154.t1 | AT2G04030 | 47.710 | 677 | 327 | 10 | 4 | 668 | 76 | 737 | 0.0 | 604 |
| MS.gene49154.t1 | AT3G07770 | 46.824 | 677 | 340 | 10 | 4 | 669 | 94 | 761 | 0.0 | 603 |
| MS.gene49154.t1 | AT3G07770 | 46.824 | 677 | 340 | 10 | 4 | 669 | 94 | 761 | 0.0 | 603 |
| MS.gene49154.t1 | AT3G07770 | 46.824 | 677 | 340 | 10 | 4 | 669 | 94 | 761 | 0.0 | 603 |
| MS.gene49154.t1 | AT2G04030 | 47.259 | 675 | 330 | 10 | 4 | 668 | 76 | 734 | 0.0 | 595 |
Find 164 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCCAAGAATTTGAAAT+TGG | 0.171299 | 1.3:-68726984 | MS.gene49154:CDS |
| CTTGGAGAAACTTAAGAAAA+AGG | 0.178941 | 1.3:-68726783 | MS.gene49154:CDS |
| TTCAGATTTGGTGAACAATT+TGG | 0.182629 | 1.3:-68728567 | MS.gene49154:intron |
| CAAATCAAATGGTGCCCTTT+TGG | 0.194525 | 1.3:+68727273 | None:intergenic |
| TTCCATCATACTCCTTTAAT+TGG | 0.201211 | 1.3:+68726711 | None:intergenic |
| TGCTGAAACCTTTGCATTCC+AGG | 0.239703 | 1.3:-68729053 | MS.gene49154:CDS |
| GATACCCAATTTCAAATTCT+TGG | 0.247197 | 1.3:+68726979 | None:intergenic |
| GTCTCCCAATACCTCCTTGA+TGG | 0.280128 | 1.3:+68726580 | None:intergenic |
| TTAAATTAATTTACCTGCTT+TGG | 0.287566 | 1.3:+68728718 | None:intergenic |
| AAGATGGAGGAGGTTGATTA+AGG | 0.291854 | 1.3:-68726140 | None:intergenic |
| GTTAGCATGATTGGTCAATT+TGG | 0.295958 | 1.3:-68728485 | MS.gene49154:CDS |
| TGTTTGGTGACTGGTGAATA+TGG | 0.317819 | 1.3:-68726509 | MS.gene49154:CDS |
| CTTGGAGGAGAGAAGGATTA+AGG | 0.334725 | 1.3:-68727662 | MS.gene49154:CDS |
| TAGTCAGAACAGAGCTAAAT+TGG | 0.338612 | 1.3:-68726948 | MS.gene49154:CDS |
| GTATGCTGTTGGCCAATTAA+AGG | 0.342228 | 1.3:-68726723 | MS.gene49154:CDS |
| TGTGGAGAATTCTCCATTCT+TGG | 0.342762 | 1.3:-68726801 | MS.gene49154:CDS |
| CAACCCTGACAATGGCATTA+TGG | 0.344688 | 1.3:-68726393 | MS.gene49154:CDS |
| CATCAGACTTGTTCCTGATA+AGG | 0.348448 | 1.3:-68728783 | MS.gene49154:CDS |
| CATTTGATTTGTTTGATACT+AGG | 0.350065 | 1.3:-68727261 | MS.gene49154:CDS |
| TCAGATTTGGTGAACAATTT+GGG | 0.350972 | 1.3:-68728566 | MS.gene49154:intron |
| ATGATGATGAACAATACATT+TGG | 0.355356 | 1.3:-68728403 | MS.gene49154:CDS |
| CAATGAGATTGCTGAGAATA+AGG | 0.366299 | 1.3:-68727032 | MS.gene49154:CDS |
| AATTCGATTTGAAAGCTTAA+CGG | 0.373408 | 1.3:-68728840 | MS.gene49154:CDS |
| TGTGAGGAGGGTGTTCATTA+TGG | 0.374488 | 1.3:-68727212 | MS.gene49154:CDS |
| CAGGACCATCAAGGAGGTAT+TGG | 0.383987 | 1.3:-68726585 | MS.gene49154:CDS |
| GTGGATCTTTCACTGTTACT+AGG | 0.388088 | 1.3:-68728367 | MS.gene49154:CDS |
| TTCTCAGTCCAAAGGTAGAT+AGG | 0.389672 | 1.3:+68727604 | None:intergenic |
| GAGACAGCACTCTTAACTTC+TGG | 0.389999 | 1.3:-68726299 | MS.gene49154:CDS |
| ATTCTACCAGCAAACATGTT+TGG | 0.393274 | 1.3:+68726260 | None:intergenic |
| TTCTCCAAGAATTTGAAATT+GGG | 0.395764 | 1.3:-68726983 | MS.gene49154:CDS |
| TTCTTAAGTTTCTCCAAGAA+TGG | 0.397153 | 1.3:+68726788 | None:intergenic |
| TTAGCTACCCTATCTACCTT+TGG | 0.400749 | 1.3:-68727612 | MS.gene49154:CDS |
| TGTGGATTCTCCATGTTGTT+TGG | 0.400821 | 1.3:-68726525 | MS.gene49154:CDS |
| TCGTCCTTGGTAATTTCCTC+TGG | 0.402183 | 1.3:+68727403 | None:intergenic |
| GTCTGGTACAAAGGAATTCA+TGG | 0.410673 | 1.3:-68728531 | MS.gene49154:CDS |
| ATAAGAGCATAACTAATGAT+TGG | 0.418044 | 1.3:-68727366 | MS.gene49154:CDS |
| CTATTCTCTTTGTTCCCAAA+AGG | 0.422208 | 1.3:-68727288 | MS.gene49154:CDS |
| TGTGTTATAGTTGGAATACT+TGG | 0.431020 | 1.3:-68727680 | MS.gene49154:intron |
| TGGATCTTTCACTGTTACTA+GGG | 0.435649 | 1.3:-68728366 | MS.gene49154:CDS |
| CTTGTTCCTCAAGGAAGATC+AGG | 0.435854 | 1.3:-68728303 | MS.gene49154:intron |
| TTCATGGAGGCATTACAAGC+TGG | 0.436032 | 1.3:-68728515 | MS.gene49154:CDS |
| TCCTCCATAATGCCATTGTC+AGG | 0.437528 | 1.3:+68726389 | None:intergenic |
| GAAGCTGGTATCTGCTACAA+AGG | 0.437907 | 1.3:-68726687 | MS.gene49154:CDS |
| TCTCCATGTTGTTTGGTGAC+TGG | 0.440901 | 1.3:-68726518 | MS.gene49154:CDS |
| TGATGATGAACAATACATTT+GGG | 0.441950 | 1.3:-68728402 | MS.gene49154:CDS |
| GATGATCCAAACATGTTTGC+TGG | 0.447088 | 1.3:-68726266 | MS.gene49154:CDS |
| AGGACCATCAAGGAGGTATT+GGG | 0.450304 | 1.3:-68726584 | MS.gene49154:CDS |
| AGAGAAGAAGAAATCATTTG+AGG | 0.455191 | 1.3:-68726615 | MS.gene49154:CDS |
| GGCATTGGCATGACCAAAGC+AGG | 0.455988 | 1.3:-68728731 | MS.gene49154:intron |
| TTGGGTACTATTGCGAGGTC+TGG | 0.456286 | 1.3:-68728548 | MS.gene49154:CDS |
| GGGGCTGATGTTAGCATGAT+TGG | 0.460557 | 1.3:-68728494 | MS.gene49154:CDS |
| TAAGAGCATAACTAATGATT+GGG | 0.461224 | 1.3:-68727365 | MS.gene49154:CDS |
| ACACTATCAATCATTGATAG+TGG | 0.464512 | 1.3:-68728752 | MS.gene49154:CDS |
| TGAGGATGTAGATGAAGAGA+AGG | 0.466876 | 1.3:-68727515 | MS.gene49154:CDS |
| GGAGGGTCAACTAGAGTTCA+AGG | 0.468530 | 1.3:-68727311 | MS.gene49154:CDS |
| TATTGCGAGGTCTGGTACAA+AGG | 0.469662 | 1.3:-68728540 | MS.gene49154:CDS |
| TGGAATACTTGGAGGAGAGA+AGG | 0.475060 | 1.3:-68727669 | MS.gene49154:CDS |
| CAGAATGAAAGAGGGTCAAA+AGG | 0.480856 | 1.3:-68726858 | MS.gene49154:CDS |
| CTGGTATCTGCTACAAAGGA+AGG | 0.485817 | 1.3:-68726683 | MS.gene49154:CDS |
| AATTCACAGGATGTTGAAGC+TGG | 0.485968 | 1.3:-68726240 | MS.gene49154:CDS |
| CTAGTATCAAACAAATCAAA+TGG | 0.486064 | 1.3:+68727262 | None:intergenic |
| TATTCTCTTTGTTCCCAAAA+GGG | 0.486731 | 1.3:-68727287 | MS.gene49154:CDS |
| TGTTAAGCATTTCTCTGTGG+AGG | 0.488508 | 1.3:-68727329 | MS.gene49154:CDS |
| TCAATCATTGATAGTGGCAT+TGG | 0.489484 | 1.3:-68728746 | MS.gene49154:CDS |
| GGAAAAGGAAGGAGATGTTG+AGG | 0.493255 | 1.3:-68727533 | MS.gene49154:CDS |
| GTTATAGTTGGAATACTTGG+AGG | 0.493605 | 1.3:-68727677 | MS.gene49154:intron |
| GAAGTTGGATGAGGAGAGTG+AGG | 0.493740 | 1.3:-68726657 | MS.gene49154:CDS |
| GGAGTATGATGGAAAGAAGC+TGG | 0.494717 | 1.3:-68726702 | MS.gene49154:CDS |
| CTCTGTTCTGACTATCCTCA+TGG | 0.496112 | 1.3:+68726957 | None:intergenic |
| TGATGATGAGACTGAGAAGT+TGG | 0.496914 | 1.3:+68729020 | None:intergenic |
| TGATGAACCTAAGAAGGAAA+AGG | 0.503008 | 1.3:-68727548 | MS.gene49154:CDS |
| TGAGTACCTTGGATTTGTCA+AGG | 0.505185 | 1.3:-68727167 | MS.gene49154:CDS |
| GGAAGGGTTGAAGTTGGATG+AGG | 0.506953 | 1.3:-68726666 | MS.gene49154:CDS |
| AGATGAAGACATGCCTCCAC+TGG | 0.507205 | 1.3:-68726186 | MS.gene49154:CDS |
| GATGTCAATGGTGAACAACT+TGG | 0.511608 | 1.3:-68728344 | MS.gene49154:CDS |
| TCATGGAGGCATTACAAGCT+GGG | 0.511949 | 1.3:-68728514 | MS.gene49154:CDS |
| TTGACAAATCCAAGGTACTC+AGG | 0.512897 | 1.3:+68727169 | None:intergenic |
| TCAACAAGCAGAAACCAATC+TGG | 0.514259 | 1.3:-68727435 | MS.gene49154:CDS |
| ATGATTGGTCAATTTGGTGT+TGG | 0.514305 | 1.3:-68728479 | MS.gene49154:CDS |
| ACAAGTCTGATGAAAAGCTC+TGG | 0.517102 | 1.3:+68728794 | None:intergenic |
| TAATGATTGGGAAGAACACT+TGG | 0.527807 | 1.3:-68727353 | MS.gene49154:CDS |
| TCTGGCTTACGCAACCAGAT+TGG | 0.530199 | 1.3:+68727421 | None:intergenic |
| GAATGAAGCATACTCGTCCT+TGG | 0.530562 | 1.3:+68727390 | None:intergenic |
| AAGCAACACAAGGTCCTTCA+CGG | 0.532811 | 1.3:+68726328 | None:intergenic |
| GAGTACCTTGGATTTGTCAA+GGG | 0.535864 | 1.3:-68727166 | MS.gene49154:CDS |
| AAGGATATTTACTATATCAC+TGG | 0.536155 | 1.3:-68726839 | MS.gene49154:CDS |
| TGGATTTGTCAAGGGTGTAG+TGG | 0.539035 | 1.3:-68727158 | MS.gene49154:CDS |
| GTTAAGCATTTCTCTGTGGA+GGG | 0.539665 | 1.3:-68727328 | MS.gene49154:CDS |
| ATTGTCAGGGTTGATCTCCA+TGG | 0.542460 | 1.3:+68726403 | None:intergenic |
| AGATGAGATGACAAGCTTGA+AGG | 0.542488 | 1.3:-68726891 | MS.gene49154:CDS |
| ACTGTTACTAGGGATGTCAA+TGG | 0.543110 | 1.3:-68728356 | MS.gene49154:CDS |
| GAGCTCATCCCTGAGTACCT+TGG | 0.550986 | 1.3:-68727178 | MS.gene49154:CDS |
| TGAGGATGATGAACCTAAGA+AGG | 0.554886 | 1.3:-68727554 | MS.gene49154:CDS |
| AGTTGTCTCGGATAGGATTG+TGG | 0.557675 | 1.3:-68726543 | MS.gene49154:CDS |
| TTATGGAGGAGCTGAGAAAG+AGG | 0.558690 | 1.3:-68726376 | MS.gene49154:CDS |
| TGAAGAGAGCAAGATGGAGG+AGG | 0.560190 | 1.3:-68726150 | MS.gene49154:CDS |
| CTATGTTACCAGAATGAAAG+AGG | 0.562239 | 1.3:-68726867 | MS.gene49154:CDS |
| TCTCAGTCCAAAGGTAGATA+GGG | 0.562769 | 1.3:+68727605 | None:intergenic |
| AGGCGCTGAAGAGAGCAAGA+TGG | 0.563156 | 1.3:-68726156 | MS.gene49154:CDS |
| AGTTGAGAAAGTAGTTGTCT+CGG | 0.565740 | 1.3:-68726555 | MS.gene49154:CDS |
| TTGAGAGATAGCAGCATGAG+TGG | 0.568101 | 1.3:-68726446 | MS.gene49154:CDS |
| TAAGATTACCTTGTTCCTCA+AGG | 0.569189 | 1.3:-68728312 | MS.gene49154:CDS |
| ATTCACAGGATGTTGAAGCT+GGG | 0.569221 | 1.3:-68726239 | MS.gene49154:CDS |
| TACAAAGGAAGGGTTGAAGT+TGG | 0.570527 | 1.3:-68726672 | MS.gene49154:CDS |
| CTGATCTTCCTTGAGGAACA+AGG | 0.572292 | 1.3:+68728304 | None:intergenic |
| CAAACATGTTTGGATCATCC+AGG | 0.572455 | 1.3:+68726270 | None:intergenic |
| GGCCAATTAAAGGAGTATGA+TGG | 0.574049 | 1.3:-68726713 | MS.gene49154:CDS |
| GAAGTTGGTTGATCTCAGCC+TGG | 0.575545 | 1.3:+68729035 | None:intergenic |
| TGGTGACTGGTGAATATGGA+TGG | 0.578088 | 1.3:-68726505 | MS.gene49154:CDS |
| AATCATTTGAGGATCTATGC+AGG | 0.578345 | 1.3:-68726604 | MS.gene49154:CDS |
| TGGTGAGAGTAAGAAGGCTG+TGG | 0.582985 | 1.3:-68726819 | MS.gene49154:CDS |
| TGTTTGCTGGTAGAATTCAC+AGG | 0.586334 | 1.3:-68726253 | MS.gene49154:CDS |
| TTAAGGAGGTTTCTCATGAG+TGG | 0.588342 | 1.3:-68727465 | MS.gene49154:CDS |
| TATCACTGGTGAGAGTAAGA+AGG | 0.590152 | 1.3:-68726825 | MS.gene49154:CDS |
| AATGGTGAACAACTTGGAAG+AGG | 0.590183 | 1.3:-68728338 | MS.gene49154:CDS |
| AGAAAGTAGTTGTCTCGGAT+AGG | 0.591723 | 1.3:-68726550 | MS.gene49154:CDS |
| GGCTGTTAAGCATTTCTCTG+TGG | 0.595552 | 1.3:-68727332 | MS.gene49154:CDS |
| ATGCCTCCACTGGAGGAAGT+AGG | 0.596007 | 1.3:-68726176 | MS.gene49154:CDS |
| GGATCTATGCAGGACCATCA+AGG | 0.596813 | 1.3:-68726594 | MS.gene49154:CDS |
| AGCATTGATGAGGAAGAGAC+TGG | 0.596838 | 1.3:-68726212 | MS.gene49154:CDS |
| CGCTGAAGAGAGCAAGATGG+AGG | 0.597067 | 1.3:-68726153 | MS.gene49154:CDS |
| TACATTTGGGAATCACAAGC+TGG | 0.598338 | 1.3:-68728389 | MS.gene49154:CDS |
| GACTGAGAAGACTACTGAGA+AGG | 0.602168 | 1.3:-68727590 | MS.gene49154:CDS |
| TTCACAGGATGTTGAAGCTG+GGG | 0.602382 | 1.3:-68726238 | MS.gene49154:CDS |
| ATATGGATGGAGTGCAAACA+TGG | 0.604123 | 1.3:-68726492 | MS.gene49154:CDS |
| CAGTAGTCTTCTCAGTCCAA+AGG | 0.604801 | 1.3:+68727596 | None:intergenic |
| TGACAAATCCAAGGTACTCA+GGG | 0.611848 | 1.3:+68727170 | None:intergenic |
| ATATCAAGCTGTATGTGAGG+AGG | 0.615471 | 1.3:-68727225 | MS.gene49154:CDS |
| GATCTCAGCCTGGAATGCAA+AGG | 0.619501 | 1.3:+68729045 | None:intergenic |
| TAAGAATGATAAATCCGTGA+AGG | 0.623352 | 1.3:-68726342 | MS.gene49154:CDS |
| GAAGGAGATCAGTGATGATG+AGG | 0.626522 | 1.3:-68727572 | MS.gene49154:CDS |
| GAACCTAAGAAGGAAAAGGA+AGG | 0.626940 | 1.3:-68727544 | MS.gene49154:CDS |
| TCTCAATGCACTTCTTCACA+AGG | 0.627680 | 1.3:+68727059 | None:intergenic |
| GCGCCTACTTCCTCCAGTGG+AGG | 0.628820 | 1.3:+68726173 | None:intergenic |
| TGGTATCTGCTACAAAGGAA+GGG | 0.629588 | 1.3:-68726682 | MS.gene49154:CDS |
| TATCAAGCTGTATGTGAGGA+GGG | 0.629910 | 1.3:-68727224 | MS.gene49154:CDS |
| TATGGAGGAGCTGAGAAAGA+GGG | 0.630167 | 1.3:-68726375 | MS.gene49154:CDS |
| TCAGCGCCTACTTCCTCCAG+TGG | 0.632812 | 1.3:+68726170 | None:intergenic |
| CATGGAGGCATTACAAGCTG+GGG | 0.633123 | 1.3:-68728513 | MS.gene49154:CDS |
| CCTCCATAATGCCATTGTCA+GGG | 0.633801 | 1.3:+68726390 | None:intergenic |
| TCACCAGTCACCAAACAACA+TGG | 0.634548 | 1.3:+68726515 | None:intergenic |
| ATGGAGATCAACCCTGACAA+TGG | 0.636528 | 1.3:-68726401 | MS.gene49154:CDS |
| CATGTCTAGCAAGAAGACCA+TGG | 0.639969 | 1.3:-68726420 | MS.gene49154:CDS |
| ATTTGGGAATCACAAGCTGG+TGG | 0.641832 | 1.3:-68728386 | MS.gene49154:CDS |
| CCCTGACAATGGCATTATGG+AGG | 0.643069 | 1.3:-68726390 | MS.gene49154:CDS |
| GATGGAGTGCAAACATGGAG+AGG | 0.643902 | 1.3:-68726487 | MS.gene49154:CDS |
| GCTGGGGCTCAGCATTGATG+AGG | 0.646731 | 1.3:-68726222 | MS.gene49154:CDS |
| CTACACCCTTGACAAATCCA+AGG | 0.647229 | 1.3:+68727161 | None:intergenic |
| GCTATTGACGAGTATGCTGT+TGG | 0.649715 | 1.3:-68726734 | MS.gene49154:CDS |
| TGTATACCTGATCTTCCTTG+AGG | 0.654298 | 1.3:+68728297 | None:intergenic |
| ACAATTTGGGTACTATTGCG+AGG | 0.656937 | 1.3:-68728553 | MS.gene49154:CDS |
| ATCTCACGAGAGATATTGAG+TGG | 0.657230 | 1.3:+68727121 | None:intergenic |
| AATCTGGTTGCGTAAGCCAG+AGG | 0.658174 | 1.3:-68727419 | MS.gene49154:CDS |
| ACAATATCAAGCTGTATGTG+AGG | 0.660885 | 1.3:-68727228 | MS.gene49154:CDS |
| TGAAGACATGCCTCCACTGG+AGG | 0.665463 | 1.3:-68726183 | MS.gene49154:CDS |
| AAACATGGAGAGGATCATGA+AGG | 0.667122 | 1.3:-68726477 | MS.gene49154:CDS |
| TTTGAAATTGGGTATCCATG+AGG | 0.672057 | 1.3:-68726972 | MS.gene49154:CDS |
| TATGTTACCAGAATGAAAGA+GGG | 0.686570 | 1.3:-68726866 | MS.gene49154:CDS |
| TCTCAAACAGAAGCAACACA+AGG | 0.697952 | 1.3:+68726318 | None:intergenic |
| ATTGATGAGGAAGAGACTGG+TGG | 0.705591 | 1.3:-68726209 | MS.gene49154:CDS |
| TAAGCCAGAGGAAATTACCA+AGG | 0.721489 | 1.3:-68727407 | MS.gene49154:CDS |
| CATTGCTGATGAGTTCACGA+AGG | 0.740684 | 1.3:+68728969 | None:intergenic |
| TCTATGCAGGACCATCAAGG+AGG | 0.752495 | 1.3:-68726591 | MS.gene49154:CDS |
| TGGTACAAAGGAATTCATGG+AGG | 0.756490 | 1.3:-68728528 | MS.gene49154:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAATTAGAAAAATTT+AGG | + | chr1.3:68726278-68726297 | None:intergenic | 10.0% |
| !! | AAAGAAAAAAAAGAAGATTA+AGG | - | chr1.3:68727721-68727740 | MS.gene49154:intron | 15.0% |
| !! | ATTATATGTATCAAAATTCA+AGG | + | chr1.3:68727196-68727215 | None:intergenic | 15.0% |
| !! | CAATAATTTGAGAAATTAAA+TGG | - | chr1.3:68726978-68726997 | MS.gene49154:CDS | 15.0% |
| !! | TGATTTGAATTATTATTAGT+TGG | - | chr1.3:68727320-68727339 | MS.gene49154:CDS | 15.0% |
| !!! | TAAAATTATTTTCTTTCCAA+AGG | + | chr1.3:68727103-68727122 | None:intergenic | 15.0% |
| !!! | TGATTTTTTTTTTTCATTAC+AGG | - | chr1.3:68726330-68726349 | MS.gene49154:CDS | 15.0% |
| !!! | TTGGAAAGAAAATAATTTTA+TGG | - | chr1.3:68727103-68727122 | MS.gene49154:CDS | 15.0% |
| !! | AAAATTATACAATACAACCA+TGG | + | chr1.3:68727439-68727458 | None:intergenic | 20.0% |
| !! | ATGAACTTATGACATTATTA+TGG | - | chr1.3:68727357-68727376 | MS.gene49154:CDS | 20.0% |
| !! | GTTTGTAATTCATGTTTAAT+GGG | - | chr1.3:68726598-68726617 | MS.gene49154:CDS | 20.0% |
| !! | TGTTTGTAATTCATGTTTAA+TGG | - | chr1.3:68726597-68726616 | MS.gene49154:CDS | 20.0% |
| !! | TTAAATTAATTTACCTGCTT+TGG | + | chr1.3:68726488-68726507 | None:intergenic | 20.0% |
| ! | AAGGATATTTACTATATCAC+TGG | - | chr1.3:68728364-68728383 | MS.gene49154:CDS | 25.0% |
| ! | CTAGTATCAAACAAATCAAA+TGG | + | chr1.3:68727944-68727963 | None:intergenic | 25.0% |
| ! | GAAAAAAAAGAAGATTAAGG+AGG | - | chr1.3:68727724-68727743 | MS.gene49154:intron | 25.0% |
| ! | GATTCAAACAACAAGAAAAT+TGG | + | chr1.3:68727276-68727295 | None:intergenic | 25.0% |
| ! | TATGATTCAACAATAACCTT+TGG | - | chr1.3:68727084-68727103 | MS.gene49154:CDS | 25.0% |
| ! | TTGGAGAAACTTAAGAAAAA+GGG | - | chr1.3:68728421-68728440 | MS.gene49154:CDS | 25.0% |
| !! | AAATTATCAAAAAGTGTAGC+TGG | + | chr1.3:68727242-68727261 | None:intergenic | 25.0% |
| !! | AATTCGATTTGAAAGCTTAA+CGG | - | chr1.3:68726363-68726382 | MS.gene49154:CDS | 25.0% |
| !! | ATAAGAGCATAACTAATGAT+TGG | - | chr1.3:68727837-68727856 | MS.gene49154:intron | 25.0% |
| !! | ATGATGATGAACAATACATT+TGG | - | chr1.3:68726800-68726819 | MS.gene49154:CDS | 25.0% |
| !! | TAAGAGCATAACTAATGATT+GGG | - | chr1.3:68727838-68727857 | MS.gene49154:intron | 25.0% |
| !! | TGATGATGAACAATACATTT+GGG | - | chr1.3:68726801-68726820 | MS.gene49154:CDS | 25.0% |
| !! | TTCTCCAAGAATTTGAAATT+GGG | - | chr1.3:68728220-68728239 | MS.gene49154:intron | 25.0% |
| !! | TTTCTCCAAGAATTTGAAAT+TGG | - | chr1.3:68728219-68728238 | MS.gene49154:intron | 25.0% |
| !!! | ATAAGATTTTGAAGGTGATT+AGG | - | chr1.3:68728116-68728135 | MS.gene49154:intron | 25.0% |
| !!! | CATTTGATTTGTTTGATACT+AGG | - | chr1.3:68727942-68727961 | MS.gene49154:intron | 25.0% |
| !!! | TGATTTATTGACTTTCTTGT+TGG | - | chr1.3:68727497-68727516 | MS.gene49154:CDS | 25.0% |
| !!! | TTGTTTGAATCACTTTTGTT+CGG | - | chr1.3:68727285-68727304 | MS.gene49154:CDS | 25.0% |
| !!! | TTTTTTTTCATTACAGGCTT+TGG | - | chr1.3:68726336-68726355 | MS.gene49154:CDS | 25.0% |
| AATTTAGGAAAAACTCACGT+CGG | + | chr1.3:68726263-68726282 | None:intergenic | 30.0% | |
| ACACTATCAATCATTGATAG+TGG | - | chr1.3:68726451-68726470 | MS.gene49154:CDS | 30.0% | |
| AGAGAAGAAGAAATCATTTG+AGG | - | chr1.3:68728588-68728607 | MS.gene49154:intron | 30.0% | |
| AGATACCATTCTACAAAAAG+TGG | - | chr1.3:68728289-68728308 | MS.gene49154:intron | 30.0% | |
| ATTGACACAAAAGGAAAAGA+GGG | + | chr1.3:68727470-68727489 | None:intergenic | 30.0% | |
| CAAACAACAAGAAAATTGGT+TGG | + | chr1.3:68727272-68727291 | None:intergenic | 30.0% | |
| CATTTGTCTATTGACACAAA+AGG | + | chr1.3:68727479-68727498 | None:intergenic | 30.0% | |
| CTTGGAGAAACTTAAGAAAA+AGG | - | chr1.3:68728420-68728439 | MS.gene49154:CDS | 30.0% | |
| GATACCCAATTTCAAATTCT+TGG | + | chr1.3:68728227-68728246 | None:intergenic | 30.0% | |
| TAAGAATGATAAATCCGTGA+AGG | - | chr1.3:68728861-68728880 | MS.gene49154:intron | 30.0% | |
| TATGTTACCAGAATGAAAGA+GGG | - | chr1.3:68728337-68728356 | MS.gene49154:CDS | 30.0% | |
| TATTCTCTTTGTTCCCAAAA+GGG | - | chr1.3:68727916-68727935 | MS.gene49154:intron | 30.0% | |
| TATTGACACAAAAGGAAAAG+AGG | + | chr1.3:68727471-68727490 | None:intergenic | 30.0% | |
| TCTCTAGACTCATAATCATA+TGG | + | chr1.3:68727004-68727023 | None:intergenic | 30.0% | |
| TGTGTTATAGTTGGAATACT+TGG | - | chr1.3:68727523-68727542 | MS.gene49154:CDS | 30.0% | |
| TTCCATCATACTCCTTTAAT+TGG | + | chr1.3:68728495-68728514 | None:intergenic | 30.0% | |
| TTCTTAAGTTTCTCCAAGAA+TGG | + | chr1.3:68728418-68728437 | None:intergenic | 30.0% | |
| ! | GCAACAGAATAAGATTTTGA+AGG | - | chr1.3:68728108-68728127 | MS.gene49154:intron | 30.0% |
| !! | AGTGTTTTGTTATCCTTATC+AGG | + | chr1.3:68726436-68726455 | None:intergenic | 30.0% |
| !! | TCAGATTTGGTGAACAATTT+GGG | - | chr1.3:68726637-68726656 | MS.gene49154:CDS | 30.0% |
| !! | TTCAGATTTGGTGAACAATT+TGG | - | chr1.3:68726636-68726655 | MS.gene49154:CDS | 30.0% |
| !!! | TGTTGGTTTTGTGTTATAGT+TGG | - | chr1.3:68727514-68727533 | MS.gene49154:CDS | 30.0% |
| AATCATTTGAGGATCTATGC+AGG | - | chr1.3:68728599-68728618 | MS.gene49154:intron | 35.0% | |
| ACAATATCAAGCTGTATGTG+AGG | - | chr1.3:68727975-68727994 | MS.gene49154:intron | 35.0% | |
| ACTTAAGAAAAAGGGCTATG+AGG | - | chr1.3:68728429-68728448 | MS.gene49154:CDS | 35.0% | |
| AGTTGAGAAAGTAGTTGTCT+CGG | - | chr1.3:68728648-68728667 | MS.gene49154:intron | 35.0% | |
| ATTCTACCAGCAAACATGTT+TGG | + | chr1.3:68728946-68728965 | None:intergenic | 35.0% | |
| CAATGAGATTGCTGAGAATA+AGG | - | chr1.3:68728171-68728190 | MS.gene49154:intron | 35.0% | |
| CTATGTTACCAGAATGAAAG+AGG | - | chr1.3:68728336-68728355 | MS.gene49154:CDS | 35.0% | |
| CTATTCTCTTTGTTCCCAAA+AGG | - | chr1.3:68727915-68727934 | MS.gene49154:intron | 35.0% | |
| GAATCTTGATGTGATAACCA+TGG | - | chr1.3:68727419-68727438 | MS.gene49154:CDS | 35.0% | |
| GTTATAGTTGGAATACTTGG+AGG | - | chr1.3:68727526-68727545 | MS.gene49154:CDS | 35.0% | |
| TAAGATTACCTTGTTCCTCA+AGG | - | chr1.3:68726891-68726910 | MS.gene49154:CDS | 35.0% | |
| TAATGATTGGGAAGAACACT+TGG | - | chr1.3:68727850-68727869 | MS.gene49154:intron | 35.0% | |
| TAGTCAGAACAGAGCTAAAT+TGG | - | chr1.3:68728255-68728274 | MS.gene49154:intron | 35.0% | |
| TATGAGTCTAGAGACTAAGT+TGG | - | chr1.3:68727010-68727029 | MS.gene49154:CDS | 35.0% | |
| TGATGAACCTAAGAAGGAAA+AGG | - | chr1.3:68727655-68727674 | MS.gene49154:CDS | 35.0% | |
| TGGATCTTTCACTGTTACTA+GGG | - | chr1.3:68726837-68726856 | MS.gene49154:CDS | 35.0% | |
| ! | AAATCAAATGGTGCCCTTTT+GGG | + | chr1.3:68727932-68727951 | None:intergenic | 35.0% |
| ! | GTTAGCATGATTGGTCAATT+TGG | - | chr1.3:68726718-68726737 | MS.gene49154:CDS | 35.0% |
| ! | GTTGCTGATTGTTTCAGATT+TGG | - | chr1.3:68726624-68726643 | MS.gene49154:CDS | 35.0% |
| ! | TCTCTAGTGTGCATCTATTT+TGG | - | chr1.3:68727158-68727177 | MS.gene49154:CDS | 35.0% |
| ! | TTTGAAATTGGGTATCCATG+AGG | - | chr1.3:68728231-68728250 | MS.gene49154:intron | 35.0% |
| !! | ATCACTTTTGTTCGGTCATT+TGG | - | chr1.3:68727293-68727312 | MS.gene49154:CDS | 35.0% |
| !! | ATGATTGGTCAATTTGGTGT+TGG | - | chr1.3:68726724-68726743 | MS.gene49154:CDS | 35.0% |
| !! | CAACACTTTTTACAGCAACA+AGG | - | chr1.3:68726204-68726223 | MS.gene49154:CDS | 35.0% |
| !! | TCAATCATTGATAGTGGCAT+TGG | - | chr1.3:68726457-68726476 | MS.gene49154:CDS | 35.0% |
| !!! | CATCTCCACTTTTTGTAGAA+TGG | + | chr1.3:68728297-68728316 | None:intergenic | 35.0% |
| AAACATGGAGAGGATCATGA+AGG | - | chr1.3:68728726-68728745 | MS.gene49154:intron | 40.0% | |
| AATGGTGAACAACTTGGAAG+AGG | - | chr1.3:68726865-68726884 | MS.gene49154:CDS | 40.0% | |
| AATTCACAGGATGTTGAAGC+TGG | - | chr1.3:68728963-68728982 | MS.gene49154:CDS | 40.0% | |
| ACAAGTCTGATGAAAAGCTC+TGG | + | chr1.3:68726412-68726431 | None:intergenic | 40.0% | |
| ACAATTTGGGTACTATTGCG+AGG | - | chr1.3:68726650-68726669 | MS.gene49154:CDS | 40.0% | |
| ACTGTTACTAGGGATGTCAA+TGG | - | chr1.3:68726847-68726866 | MS.gene49154:CDS | 40.0% | |
| AGAAAGTAGTTGTCTCGGAT+AGG | - | chr1.3:68728653-68728672 | MS.gene49154:intron | 40.0% | |
| AGATGAGATGACAAGCTTGA+AGG | - | chr1.3:68728312-68728331 | MS.gene49154:CDS | 40.0% | |
| ATATCAAGCTGTATGTGAGG+AGG | - | chr1.3:68727978-68727997 | MS.gene49154:intron | 40.0% | |
| ATATGGATGGAGTGCAAACA+TGG | - | chr1.3:68728711-68728730 | MS.gene49154:intron | 40.0% | |
| ATCTCACGAGAGATATTGAG+TGG | + | chr1.3:68728085-68728104 | None:intergenic | 40.0% | |
| ATGGCGCGTAAGATTTGAAA+CGG | - | chr1.3:68727376-68727395 | MS.gene49154:CDS | 40.0% | |
| ATTCACAGGATGTTGAAGCT+GGG | - | chr1.3:68728964-68728983 | MS.gene49154:CDS | 40.0% | |
| CAAACATGTTTGGATCATCC+AGG | + | chr1.3:68728936-68728955 | None:intergenic | 40.0% | |
| CAGAATGAAAGAGGGTCAAA+AGG | - | chr1.3:68728345-68728364 | MS.gene49154:CDS | 40.0% | |
| GAACCTAAGAAGGAAAAGGA+AGG | - | chr1.3:68727659-68727678 | MS.gene49154:CDS | 40.0% | |
| GAGTACCTTGGATTTGTCAA+GGG | - | chr1.3:68728037-68728056 | MS.gene49154:intron | 40.0% | |
| GATGATCCAAACATGTTTGC+TGG | - | chr1.3:68728937-68728956 | MS.gene49154:intron | 40.0% | |
| GATGTCAATGGTGAACAACT+TGG | - | chr1.3:68726859-68726878 | MS.gene49154:CDS | 40.0% | |
| GTATGCTGTTGGCCAATTAA+AGG | - | chr1.3:68728480-68728499 | MS.gene49154:CDS | 40.0% | |
| GTCTGGTACAAAGGAATTCA+TGG | - | chr1.3:68726672-68726691 | MS.gene49154:CDS | 40.0% | |
| GTGGATCTTTCACTGTTACT+AGG | - | chr1.3:68726836-68726855 | MS.gene49154:CDS | 40.0% | |
| GTTAAGCATTTCTCTGTGGA+GGG | - | chr1.3:68727875-68727894 | MS.gene49154:intron | 40.0% | |
| TAAGCCAGAGGAAATTACCA+AGG | - | chr1.3:68727796-68727815 | MS.gene49154:intron | 40.0% | |
| TACAAAGGAAGGGTTGAAGT+TGG | - | chr1.3:68728531-68728550 | MS.gene49154:CDS | 40.0% | |
| TACATTTGGGAATCACAAGC+TGG | - | chr1.3:68726814-68726833 | MS.gene49154:CDS | 40.0% | |
| TATCAAGCTGTATGTGAGGA+GGG | - | chr1.3:68727979-68727998 | MS.gene49154:intron | 40.0% | |
| TATCACTGGTGAGAGTAAGA+AGG | - | chr1.3:68728378-68728397 | MS.gene49154:CDS | 40.0% | |
| TCAACAAGCAGAAACCAATC+TGG | - | chr1.3:68727768-68727787 | MS.gene49154:intron | 40.0% | |
| TCTCAAACAGAAGCAACACA+AGG | + | chr1.3:68728888-68728907 | None:intergenic | 40.0% | |
| TCTCAATGCACTTCTTCACA+AGG | + | chr1.3:68728147-68728166 | None:intergenic | 40.0% | |
| TCTCAGTCCAAAGGTAGATA+GGG | + | chr1.3:68727601-68727620 | None:intergenic | 40.0% | |
| TGAGGATGATGAACCTAAGA+AGG | - | chr1.3:68727649-68727668 | MS.gene49154:CDS | 40.0% | |
| TGAGGATGTAGATGAAGAGA+AGG | - | chr1.3:68727688-68727707 | MS.gene49154:intron | 40.0% | |
| TGAGTACCTTGGATTTGTCA+AGG | - | chr1.3:68728036-68728055 | MS.gene49154:intron | 40.0% | |
| TGGTACAAAGGAATTCATGG+AGG | - | chr1.3:68726675-68726694 | MS.gene49154:CDS | 40.0% | |
| TGGTATCTGCTACAAAGGAA+GGG | - | chr1.3:68728521-68728540 | MS.gene49154:CDS | 40.0% | |
| TGTATACCTGATCTTCCTTG+AGG | + | chr1.3:68726909-68726928 | None:intergenic | 40.0% | |
| TGTGGAGAATTCTCCATTCT+TGG | - | chr1.3:68728402-68728421 | MS.gene49154:CDS | 40.0% | |
| TGTGGATTCTCCATGTTGTT+TGG | - | chr1.3:68728678-68728697 | MS.gene49154:intron | 40.0% | |
| TGTTAAGCATTTCTCTGTGG+AGG | - | chr1.3:68727874-68727893 | MS.gene49154:intron | 40.0% | |
| TTAAGGAGGTTTCTCATGAG+TGG | - | chr1.3:68727738-68727757 | MS.gene49154:intron | 40.0% | |
| TTAGCTACCCTATCTACCTT+TGG | - | chr1.3:68727591-68727610 | MS.gene49154:CDS | 40.0% | |
| TTCTCAGTCCAAAGGTAGAT+AGG | + | chr1.3:68727602-68727621 | None:intergenic | 40.0% | |
| ! | CAAATCAAATGGTGCCCTTT+TGG | + | chr1.3:68727933-68727952 | None:intergenic | 40.0% |
| ! | CATCAGACTTGTTCCTGATA+AGG | - | chr1.3:68726420-68726439 | MS.gene49154:CDS | 40.0% |
| ! | CTTTTGACCCTCTTTCATTC+TGG | + | chr1.3:68728347-68728366 | None:intergenic | 40.0% |
| ! | GGCCAATTAAAGGAGTATGA+TGG | - | chr1.3:68728490-68728509 | MS.gene49154:CDS | 40.0% |
| ! | TCTCCTTCCTTTTCCTTCTT+AGG | + | chr1.3:68727665-68727684 | None:intergenic | 40.0% |
| ! | TGACAAATCCAAGGTACTCA+GGG | + | chr1.3:68728036-68728055 | None:intergenic | 40.0% |
| ! | TGATGATGAGACTGAGAAGT+TGG | + | chr1.3:68726186-68726205 | None:intergenic | 40.0% |
| ! | TGTCAGTGTTGTTGTGTGTT+TGG | - | chr1.3:68726568-68726587 | MS.gene49154:CDS | 40.0% |
| ! | TGTTTGCTGGTAGAATTCAC+AGG | - | chr1.3:68728950-68728969 | MS.gene49154:intron | 40.0% |
| ! | TGTTTGGTGACTGGTGAATA+TGG | - | chr1.3:68728694-68728713 | MS.gene49154:intron | 40.0% |
| ! | TTGACAAATCCAAGGTACTC+AGG | + | chr1.3:68728037-68728056 | None:intergenic | 40.0% |
| !!! | CTTAACTTCTGGTTTTAGCC+TGG | - | chr1.3:68728915-68728934 | MS.gene49154:intron | 40.0% |
| AAGCAACACAAGGTCCTTCA+CGG | + | chr1.3:68728878-68728897 | None:intergenic | 45.0% | |
| AGTTGTCTCGGATAGGATTG+TGG | - | chr1.3:68728660-68728679 | MS.gene49154:intron | 45.0% | |
| ATGGAGATCAACCCTGACAA+TGG | - | chr1.3:68728802-68728821 | MS.gene49154:CDS | 45.0% | |
| ATTGATGAGGAAGAGACTGG+TGG | - | chr1.3:68728994-68729013 | MS.gene49154:CDS | 45.0% | |
| ATTTGGGAATCACAAGCTGG+TGG | - | chr1.3:68726817-68726836 | MS.gene49154:CDS | 45.0% | |
| CAACCCTGACAATGGCATTA+TGG | - | chr1.3:68728810-68728829 | MS.gene49154:CDS | 45.0% | |
| CAGTAGTCTTCTCAGTCCAA+AGG | + | chr1.3:68727610-68727629 | None:intergenic | 45.0% | |
| CATGTCTAGCAAGAAGACCA+TGG | - | chr1.3:68728783-68728802 | MS.gene49154:CDS | 45.0% | |
| CATTGCTGATGAGTTCACGA+AGG | + | chr1.3:68726237-68726256 | None:intergenic | 45.0% | |
| CCTCCATAATGCCATTGTCA+GGG | + | chr1.3:68728816-68728835 | None:intergenic | 45.0% | |
| CTACACCCTTGACAAATCCA+AGG | + | chr1.3:68728045-68728064 | None:intergenic | 45.0% | |
| CTCTGTTCTGACTATCCTCA+TGG | + | chr1.3:68728249-68728268 | None:intergenic | 45.0% | |
| CTGATCTTCCTTGAGGAACA+AGG | + | chr1.3:68726902-68726921 | None:intergenic | 45.0% | |
| CTGGTATCTGCTACAAAGGA+AGG | - | chr1.3:68728520-68728539 | MS.gene49154:CDS | 45.0% | |
| CTTGGAGGAGAGAAGGATTA+AGG | - | chr1.3:68727541-68727560 | MS.gene49154:CDS | 45.0% | |
| CTTGTTCCTCAAGGAAGATC+AGG | - | chr1.3:68726900-68726919 | MS.gene49154:CDS | 45.0% | |
| GAAGCTGGTATCTGCTACAA+AGG | - | chr1.3:68728516-68728535 | MS.gene49154:CDS | 45.0% | |
| GAATGAAGCATACTCGTCCT+TGG | + | chr1.3:68727816-68727835 | None:intergenic | 45.0% | |
| GACTGAGAAGACTACTGAGA+AGG | - | chr1.3:68727613-68727632 | MS.gene49154:CDS | 45.0% | |
| GAGACAGCACTCTTAACTTC+TGG | - | chr1.3:68728904-68728923 | MS.gene49154:intron | 45.0% | |
| GCTATTGACGAGTATGCTGT+TGG | - | chr1.3:68728469-68728488 | MS.gene49154:CDS | 45.0% | |
| GGAAAAGGAAGGAGATGTTG+AGG | - | chr1.3:68727670-68727689 | MS.gene49154:CDS | 45.0% | |
| GGCTGTTAAGCATTTCTCTG+TGG | - | chr1.3:68727871-68727890 | MS.gene49154:intron | 45.0% | |
| TATGGAGGAGCTGAGAAAGA+GGG | - | chr1.3:68728828-68728847 | MS.gene49154:CDS | 45.0% | |
| TATTGCGAGGTCTGGTACAA+AGG | - | chr1.3:68726663-68726682 | MS.gene49154:CDS | 45.0% | |
| TCACCAGTCACCAAACAACA+TGG | + | chr1.3:68728691-68728710 | None:intergenic | 45.0% | |
| TCCTCCATAATGCCATTGTC+AGG | + | chr1.3:68728817-68728836 | None:intergenic | 45.0% | |
| TGCTGAAACCTTTGCATTCC+AGG | - | chr1.3:68726150-68726169 | MS.gene49154:CDS | 45.0% | |
| TGGAATACTTGGAGGAGAGA+AGG | - | chr1.3:68727534-68727553 | MS.gene49154:CDS | 45.0% | |
| TGGTGACTGGTGAATATGGA+TGG | - | chr1.3:68728698-68728717 | MS.gene49154:intron | 45.0% | |
| TTATGGAGGAGCTGAGAAAG+AGG | - | chr1.3:68728827-68728846 | MS.gene49154:CDS | 45.0% | |
| TTCACAGGATGTTGAAGCTG+GGG | - | chr1.3:68728965-68728984 | MS.gene49154:CDS | 45.0% | |
| TTGAGAGATAGCAGCATGAG+TGG | - | chr1.3:68728757-68728776 | MS.gene49154:CDS | 45.0% | |
| ! | ATTGTCAGGGTTGATCTCCA+TGG | + | chr1.3:68728803-68728822 | None:intergenic | 45.0% |
| ! | GAAGGAGATCAGTGATGATG+AGG | - | chr1.3:68727631-68727650 | MS.gene49154:CDS | 45.0% |
| ! | GGAGTATGATGGAAAGAAGC+TGG | - | chr1.3:68728501-68728520 | MS.gene49154:CDS | 45.0% |
| ! | TCGTCCTTGGTAATTTCCTC+TGG | + | chr1.3:68727803-68727822 | None:intergenic | 45.0% |
| ! | TCTCCATGTTGTTTGGTGAC+TGG | - | chr1.3:68728685-68728704 | MS.gene49154:intron | 45.0% |
| ! | TGGATTTGTCAAGGGTGTAG+TGG | - | chr1.3:68728045-68728064 | MS.gene49154:intron | 45.0% |
| !! | AGCATTGATGAGGAAGAGAC+TGG | - | chr1.3:68728991-68729010 | MS.gene49154:CDS | 45.0% |
| !! | AGGACCATCAAGGAGGTATT+GGG | - | chr1.3:68728619-68728638 | MS.gene49154:intron | 45.0% |
| !! | CTATGAGGTGCTTTTCATGG+TGG | - | chr1.3:68728444-68728463 | MS.gene49154:CDS | 45.0% |
| !! | GACTAAGTTGGTAGCACTCA+TGG | - | chr1.3:68727022-68727041 | MS.gene49154:CDS | 45.0% |
| !! | TCATGGAGGCATTACAAGCT+GGG | - | chr1.3:68726689-68726708 | MS.gene49154:CDS | 45.0% |
| !! | TGTGAGGAGGGTGTTCATTA+TGG | - | chr1.3:68727991-68728010 | MS.gene49154:intron | 45.0% |
| !! | TTCATGGAGGCATTACAAGC+TGG | - | chr1.3:68726688-68726707 | MS.gene49154:CDS | 45.0% |
| AATCTGGTTGCGTAAGCCAG+AGG | - | chr1.3:68727784-68727803 | MS.gene49154:intron | 50.0% | |
| AGATGAAGACATGCCTCCAC+TGG | - | chr1.3:68729017-68729036 | MS.gene49154:CDS | 50.0% | |
| CCCTGACAATGGCATTATGG+AGG | - | chr1.3:68728813-68728832 | MS.gene49154:CDS | 50.0% | |
| GAAGTTGGATGAGGAGAGTG+AGG | - | chr1.3:68728546-68728565 | MS.gene49154:CDS | 50.0% | |
| GATCTCAGCCTGGAATGCAA+AGG | + | chr1.3:68726161-68726180 | None:intergenic | 50.0% | |
| GATGGAGTGCAAACATGGAG+AGG | - | chr1.3:68728716-68728735 | MS.gene49154:intron | 50.0% | |
| GGAAGGGTTGAAGTTGGATG+AGG | - | chr1.3:68728537-68728556 | MS.gene49154:CDS | 50.0% | |
| GGAGGGTCAACTAGAGTTCA+AGG | - | chr1.3:68727892-68727911 | MS.gene49154:intron | 50.0% | |
| GGATCTATGCAGGACCATCA+AGG | - | chr1.3:68728609-68728628 | MS.gene49154:intron | 50.0% | |
| GGGGCTGATGTTAGCATGAT+TGG | - | chr1.3:68726709-68726728 | MS.gene49154:CDS | 50.0% | |
| GTCTCCCAATACCTCCTTGA+TGG | + | chr1.3:68728626-68728645 | None:intergenic | 50.0% | |
| TCTATGCAGGACCATCAAGG+AGG | - | chr1.3:68728612-68728631 | MS.gene49154:intron | 50.0% | |
| TGAAGAGAGCAAGATGGAGG+AGG | - | chr1.3:68729053-68729072 | MS.gene49154:CDS | 50.0% | |
| TGGTGAGAGTAAGAAGGCTG+TGG | - | chr1.3:68728384-68728403 | MS.gene49154:CDS | 50.0% | |
| TTGGGTACTATTGCGAGGTC+TGG | - | chr1.3:68726655-68726674 | MS.gene49154:CDS | 50.0% | |
| ! | CAGGACCATCAAGGAGGTAT+TGG | - | chr1.3:68728618-68728637 | MS.gene49154:intron | 50.0% |
| ! | GAAGTTGGTTGATCTCAGCC+TGG | + | chr1.3:68726171-68726190 | None:intergenic | 50.0% |
| ! | TCTGGCTTACGCAACCAGAT+TGG | + | chr1.3:68727785-68727804 | None:intergenic | 50.0% |
| !! | CATGGAGGCATTACAAGCTG+GGG | - | chr1.3:68726690-68726709 | MS.gene49154:CDS | 50.0% |
| !! | GGGCTATGAGGTGCTTTTCA+TGG | - | chr1.3:68728441-68728460 | MS.gene49154:CDS | 50.0% |
| AGCTGGCTGCACACAATGGA+AGG | + | chr1.3:68727225-68727244 | None:intergenic | 55.0% | |
| ATGCCTCCACTGGAGGAAGT+AGG | - | chr1.3:68729027-68729046 | MS.gene49154:CDS | 55.0% | |
| CGCTGAAGAGAGCAAGATGG+AGG | - | chr1.3:68729050-68729069 | MS.gene49154:CDS | 55.0% | |
| GAGCTCATCCCTGAGTACCT+TGG | - | chr1.3:68728025-68728044 | MS.gene49154:intron | 55.0% | |
| GTGTAGCTGGCTGCACACAA+TGG | + | chr1.3:68727229-68727248 | None:intergenic | 55.0% | |
| TGAAGACATGCCTCCACTGG+AGG | - | chr1.3:68729020-68729039 | MS.gene49154:CDS | 55.0% | |
| !! | AGGCGCTGAAGAGAGCAAGA+TGG | - | chr1.3:68729047-68729066 | MS.gene49154:CDS | 55.0% |
| !! | GGCATTGGCATGACCAAAGC+AGG | - | chr1.3:68726472-68726491 | MS.gene49154:CDS | 55.0% |
| TCAGCGCCTACTTCCTCCAG+TGG | + | chr1.3:68729036-68729055 | None:intergenic | 60.0% | |
| !! | GCTGGGGCTCAGCATTGATG+AGG | - | chr1.3:68728981-68729000 | MS.gene49154:CDS | 60.0% |
| GCGCCTACTTCCTCCAGTGG+AGG | + | chr1.3:68729033-68729052 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 68726142 | 68729083 | 68726142 | ID=MS.gene49154 |
| chr1.3 | mRNA | 68726142 | 68729083 | 68726142 | ID=MS.gene49154.t1;Parent=MS.gene49154 |
| chr1.3 | exon | 68728961 | 68729083 | 68728961 | ID=MS.gene49154.t1.exon1;Parent=MS.gene49154.t1 |
| chr1.3 | CDS | 68728961 | 68729083 | 68728961 | ID=cds.MS.gene49154.t1;Parent=MS.gene49154.t1 |
| chr1.3 | exon | 68728732 | 68728873 | 68728732 | ID=MS.gene49154.t1.exon2;Parent=MS.gene49154.t1 |
| chr1.3 | CDS | 68728732 | 68728873 | 68728732 | ID=cds.MS.gene49154.t1;Parent=MS.gene49154.t1 |
| chr1.3 | exon | 68728304 | 68728584 | 68728304 | ID=MS.gene49154.t1.exon3;Parent=MS.gene49154.t1 |
| chr1.3 | CDS | 68728304 | 68728584 | 68728304 | ID=cds.MS.gene49154.t1;Parent=MS.gene49154.t1 |
| chr1.3 | exon | 68726142 | 68727692 | 68726142 | ID=MS.gene49154.t1.exon4;Parent=MS.gene49154.t1 |
| chr1.3 | CDS | 68726142 | 68727692 | 68726142 | ID=cds.MS.gene49154.t1;Parent=MS.gene49154.t1 |
| Gene Sequence |
| Protein sequence |
