Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78507.t1 | RHN55325.1 | 98.9 | 182 | 2 | 0 | 1 | 182 | 58 | 239 | 1.40E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78507.t1 | Q9S784 | 62.5 | 184 | 55 | 4 | 6 | 182 | 8 | 184 | 2.2e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78507.t1 | G7KCI8 | 98.9 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 1.0e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene78507 | 0.800496 | 1.40E-48 | -1.69E-46 |
| MS.gene052731 | MS.gene78507 | 0.803066 | 4.16E-49 | -1.69E-46 |
| MS.gene058197 | MS.gene78507 | 0.814639 | 1.39E-51 | -1.69E-46 |
| MS.gene058198 | MS.gene78507 | 0.813829 | 2.10E-51 | -1.69E-46 |
| MS.gene06057 | MS.gene78507 | 0.807832 | 4.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062344 | MS.gene78507 | PPI |
| MS.gene045787 | MS.gene78507 | PPI |
| MS.gene017137 | MS.gene78507 | PPI |
| MS.gene81030 | MS.gene78507 | PPI |
| MS.gene72394 | MS.gene78507 | PPI |
| MS.gene83241 | MS.gene78507 | PPI |
| MS.gene030064 | MS.gene78507 | PPI |
| MS.gene72395 | MS.gene78507 | PPI |
| MS.gene038370 | MS.gene78507 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78507.t1 | MTR_5g039530 | 98.901 | 182 | 2 | 0 | 1 | 182 | 1 | 182 | 2.22e-134 | 373 |
| MS.gene78507.t1 | MTR_4g108350 | 61.494 | 174 | 55 | 3 | 8 | 180 | 11 | 173 | 3.73e-75 | 223 |
| MS.gene78507.t1 | MTR_4g108350 | 58.046 | 174 | 52 | 4 | 8 | 180 | 11 | 164 | 1.11e-66 | 201 |
| MS.gene78507.t1 | MTR_3g452470 | 43.396 | 159 | 85 | 1 | 8 | 166 | 3 | 156 | 1.00e-40 | 135 |
| MS.gene78507.t1 | MTR_5g091800 | 44.172 | 163 | 79 | 2 | 7 | 166 | 2 | 155 | 7.78e-40 | 133 |
| MS.gene78507.t1 | MTR_8g096670 | 47.619 | 105 | 52 | 1 | 9 | 110 | 4 | 108 | 2.08e-29 | 105 |
| MS.gene78507.t1 | MTR_8g096670 | 52.174 | 92 | 41 | 1 | 22 | 110 | 7 | 98 | 1.76e-28 | 102 |
| MS.gene78507.t1 | MTR_3g099010 | 50.526 | 95 | 47 | 0 | 9 | 103 | 4 | 98 | 2.12e-27 | 101 |
| MS.gene78507.t1 | MTR_4g093260 | 41.722 | 151 | 78 | 3 | 8 | 158 | 6 | 146 | 1.23e-26 | 105 |
| MS.gene78507.t1 | MTR_4g093510 | 41.429 | 140 | 72 | 3 | 19 | 158 | 17 | 146 | 7.22e-26 | 103 |
| MS.gene78507.t1 | MTR_4g093270 | 38.889 | 144 | 78 | 3 | 19 | 162 | 14 | 147 | 1.88e-25 | 100 |
| MS.gene78507.t1 | MTR_4g093280 | 35.429 | 175 | 98 | 4 | 8 | 179 | 6 | 168 | 1.44e-23 | 96.7 |
| MS.gene78507.t1 | MTR_4g093260 | 41.221 | 131 | 67 | 3 | 32 | 162 | 21 | 141 | 1.77e-23 | 97.1 |
| MS.gene78507.t1 | MTR_5g019720 | 34.066 | 91 | 60 | 0 | 20 | 110 | 32 | 122 | 1.77e-12 | 63.2 |
| MS.gene78507.t1 | MTR_5g019720 | 34.483 | 87 | 57 | 0 | 24 | 110 | 36 | 122 | 4.04e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78507.t1 | AT1G69700 | 61.170 | 188 | 59 | 4 | 2 | 182 | 4 | 184 | 1.41e-79 | 234 |
| MS.gene78507.t1 | AT1G74520 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 9.72e-69 | 207 |
| MS.gene78507.t1 | AT1G74520 | 55.556 | 171 | 66 | 2 | 1 | 170 | 1 | 162 | 9.72e-69 | 207 |
| MS.gene78507.t1 | AT5G62490 | 45.355 | 183 | 83 | 4 | 1 | 182 | 1 | 167 | 7.38e-50 | 159 |
| MS.gene78507.t1 | AT2G42820 | 38.509 | 161 | 92 | 2 | 7 | 166 | 2 | 156 | 1.73e-36 | 124 |
| MS.gene78507.t1 | AT5G50720 | 56.471 | 85 | 37 | 0 | 19 | 103 | 14 | 98 | 1.81e-27 | 100 |
| MS.gene78507.t1 | AT4G24960 | 51.190 | 84 | 41 | 0 | 20 | 103 | 15 | 98 | 2.16e-25 | 95.5 |
| MS.gene78507.t1 | AT4G24960 | 51.282 | 78 | 38 | 0 | 26 | 103 | 2 | 79 | 1.15e-23 | 91.3 |
| MS.gene78507.t1 | AT4G24960 | 47.761 | 67 | 35 | 0 | 37 | 103 | 1 | 67 | 8.78e-18 | 75.1 |
| MS.gene78507.t1 | AT4G36720 | 28.571 | 112 | 79 | 1 | 20 | 130 | 40 | 151 | 4.84e-11 | 59.3 |
Find 34 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAACAATGGCTCACTTAT+TGG | 0.141168 | 5.2:+29558747 | MS.gene78507:CDS |
| TTGGTTCTTCCTCACTTTAA+TGG | 0.200883 | 5.2:+29561044 | MS.gene78507:CDS |
| AACAATATTCTTGGTCTCTA+TGG | 0.262576 | 5.2:-29558720 | None:intergenic |
| CTGCCAAACATGGGTGCTTC+TGG | 0.275435 | 5.2:+29558378 | None:intergenic |
| TTGGTCATCAACAATATTCT+TGG | 0.292453 | 5.2:-29558729 | None:intergenic |
| GAGAGGTACATGCAAGAAAA+TGG | 0.319550 | 5.2:+29561215 | MS.gene78507:CDS |
| CCAACAATGGCTCACTTATT+GGG | 0.324995 | 5.2:+29558748 | MS.gene78507:CDS |
| TACCACATTTGCGAAGTTCC+TGG | 0.390647 | 5.2:-29561140 | None:intergenic |
| AACTTACACTTCAAGAACTT+TGG | 0.394572 | 5.2:-29558810 | None:intergenic |
| CAAAGTTGATACTGAGTTGT+TGG | 0.408295 | 5.2:+29561021 | MS.gene78507:CDS |
| GCGGCATTTGTGGTAATTGT+GGG | 0.420764 | 5.2:-29561112 | None:intergenic |
| CCCAATAAGTGAGCCATTGT+TGG | 0.422265 | 5.2:-29558748 | None:intergenic |
| AACTTTGCATAAGGCCAAAT+CGG | 0.431332 | 5.2:-29561005 | None:intergenic |
| CCTGGCATTAGCGGCATTTG+TGG | 0.433095 | 5.2:-29561122 | None:intergenic |
| AGCGGCATTTGTGGTAATTG+TGG | 0.440775 | 5.2:-29561113 | None:intergenic |
| CTCAGTATCAACTTTGCATA+AGG | 0.465176 | 5.2:-29561014 | None:intergenic |
| GAATCTAAAGCAAGGAGGAA+TGG | 0.484072 | 5.2:+29561465 | MS.gene78507:CDS |
| CCACAAATGCCGCTAATGCC+AGG | 0.511549 | 5.2:+29561122 | MS.gene78507:CDS |
| AGGCAGATATGCTTCAATCA+AGG | 0.513345 | 5.2:+29558697 | MS.gene78507:intron |
| TGCGAAGTTCCTGGCATTAG+CGG | 0.524899 | 5.2:-29561131 | None:intergenic |
| CGCAAATGTGGTATGTTCCA+CGG | 0.554204 | 5.2:+29561150 | MS.gene78507:CDS |
| TGCCAGGAACTTCGCAAATG+TGG | 0.559503 | 5.2:+29561138 | MS.gene78507:CDS |
| AATTGTGGGTTCATGTAGAA+TGG | 0.566744 | 5.2:-29561098 | None:intergenic |
| GTTGATACTGAGTTGTTGGT+TGG | 0.567156 | 5.2:+29561025 | MS.gene78507:CDS |
| TTACTGAATATGTTCTTCCG+TGG | 0.635410 | 5.2:-29561167 | None:intergenic |
| ATACTTACAAAGGATAAACA+AGG | 0.644880 | 5.2:-29558564 | None:intergenic |
| ATATTGTTGATGACCAACAA+TGG | 0.658273 | 5.2:+29558735 | MS.gene78507:CDS |
| GGATAAACAAGGGTTACCAA+AGG | 0.666185 | 5.2:-29558553 | None:intergenic |
| CTGACAGAGAATCTAAAGCA+AGG | 0.668145 | 5.2:+29561457 | MS.gene78507:CDS |
| TGTGCTGCTCCATTAAAGTG+AGG | 0.689754 | 5.2:-29561053 | None:intergenic |
| TACTTACAAAGGATAAACAA+GGG | 0.713530 | 5.2:-29558563 | None:intergenic |
| ATTTGAAAGACTCATCACAA+AGG | 0.722475 | 5.2:+29561247 | MS.gene78507:CDS |
| ATGTTCTTAGTGCTGCAGAG+AGG | 0.731265 | 5.2:+29561198 | MS.gene78507:CDS |
| ACAGAGAATCTAAAGCAAGG+AGG | 0.733583 | 5.2:+29561460 | MS.gene78507:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAGTAATTTAAACTT+CGG | - | chr5.2:29561325-29561344 | None:intergenic | 10.0% |
| !! | ATGAATTAAAAATGTAATAA+TGG | - | chr5.2:29559925-29559944 | None:intergenic | 10.0% |
| !!! | ATAAATTTTTTTTTTTGACA+AGG | - | chr5.2:29558641-29558660 | None:intergenic | 10.0% |
| !!! | ATTATTACATTTTTAATTCA+TGG | + | chr5.2:29559924-29559943 | MS.gene78507:intron | 10.0% |
| !!! | TATAATGATATTTTTCAAAT+AGG | + | chr5.2:29559052-29559071 | MS.gene78507:intron | 10.0% |
| !!! | TTTTTAAAATAGAATTTTCA+AGG | + | chr5.2:29559261-29559280 | MS.gene78507:intron | 10.0% |
| !! | AAATTATAACATACTTACAA+AGG | - | chr5.2:29558577-29558596 | None:intergenic | 15.0% |
| !! | ATTACTAAATTTGAAAAACT+AGG | + | chr5.2:29561333-29561352 | MS.gene78507:intron | 15.0% |
| !!! | ATCAAATGATTTTATGATAT+TGG | - | chr5.2:29559795-29559814 | None:intergenic | 15.0% |
| !!! | TAACATAAAGTCTATTTTAT+GGG | + | chr5.2:29558926-29558945 | MS.gene78507:intron | 15.0% |
| !!! | TCAAGAATTTTTTTTTAGTT+GGG | + | chr5.2:29560780-29560799 | MS.gene78507:intron | 15.0% |
| !!! | TTAACATAAAGTCTATTTTA+TGG | + | chr5.2:29558925-29558944 | MS.gene78507:intron | 15.0% |
| !!! | TTCAAGAATTTTTTTTTAGT+TGG | + | chr5.2:29560779-29560798 | MS.gene78507:intron | 15.0% |
| !! | AACTATTGAATCTACTAATT+TGG | - | chr5.2:29559413-29559432 | None:intergenic | 20.0% |
| !! | ACTATTGAATCTACTAATTT+GGG | - | chr5.2:29559412-29559431 | None:intergenic | 20.0% |
| !! | AGCAATATGATTATAATATC+AGG | - | chr5.2:29560655-29560674 | None:intergenic | 20.0% |
| !! | GCAATATGATTATAATATCA+GGG | - | chr5.2:29560654-29560673 | None:intergenic | 20.0% |
| !! | TATGATCACAATTTACTAAT+TGG | + | chr5.2:29560698-29560717 | MS.gene78507:intron | 20.0% |
| !!! | AAATGATTTTATGATATTGG+AGG | - | chr5.2:29559792-29559811 | None:intergenic | 20.0% |
| !!! | AAGTTTTTTATGACTAAATC+TGG | + | chr5.2:29558828-29558847 | MS.gene78507:intron | 20.0% |
| !!! | CATATCACCTAATTTTTTTT+TGG | + | chr5.2:29561278-29561297 | MS.gene78507:intron | 20.0% |
| !!! | CTGTTGTTTTTTTAGAAAAT+TGG | + | chr5.2:29561362-29561381 | MS.gene78507:intron | 20.0% |
| !!! | TATTTATTTTGTGTGTTTTG+AGG | + | chr5.2:29558677-29558696 | MS.gene78507:intron | 20.0% |
| !!! | TTTTTCTTATAATAGAGACA+GGG | + | chr5.2:29559193-29559212 | MS.gene78507:intron | 20.0% |
| !!! | TTTTTTCTTATAATAGAGAC+AGG | + | chr5.2:29559192-29559211 | MS.gene78507:intron | 20.0% |
| ! | AAAAAACCAATCATAACTGA+AGG | - | chr5.2:29559510-29559529 | None:intergenic | 25.0% |
| ! | AAATTGTTCACAACAATTGT+GGG | - | chr5.2:29559547-29559566 | None:intergenic | 25.0% |
| ! | AACAATGTGATTATGGAATT+GGG | - | chr5.2:29560622-29560641 | None:intergenic | 25.0% |
| ! | AAGAAATAACATAACTATCC+TGG | - | chr5.2:29559462-29559481 | None:intergenic | 25.0% |
| ! | AAGGATAATAGGTACATTAT+GGG | - | chr5.2:29560153-29560172 | None:intergenic | 25.0% |
| ! | AATTCTTGAACTATGAAGTA+AGG | - | chr5.2:29560769-29560788 | None:intergenic | 25.0% |
| ! | ACATAATCACTCATTTAAAC+AGG | - | chr5.2:29559384-29559403 | None:intergenic | 25.0% |
| ! | ATACTTACAAAGGATAAACA+AGG | - | chr5.2:29558567-29558586 | None:intergenic | 25.0% |
| ! | ATATCATTGCATTCAAATCT+CGG | - | chr5.2:29560681-29560700 | None:intergenic | 25.0% |
| ! | CATAAACAAGTATTTGTACT+AGG | + | chr5.2:29559618-29559637 | MS.gene78507:intron | 25.0% |
| ! | CTCTTCACCAAAAAAAAATT+AGG | - | chr5.2:29561288-29561307 | None:intergenic | 25.0% |
| ! | GCTATTTAACATAGATACAA+AGG | - | chr5.2:29558463-29558482 | None:intergenic | 25.0% |
| ! | GGTTTATAGAAAAGTTAGAA+AGG | + | chr5.2:29558947-29558966 | MS.gene78507:intron | 25.0% |
| ! | TAAATTGTTCACAACAATTG+TGG | - | chr5.2:29559548-29559567 | None:intergenic | 25.0% |
| ! | TAACAATGTGATTATGGAAT+TGG | - | chr5.2:29560623-29560642 | None:intergenic | 25.0% |
| ! | TAAGGATAATAGGTACATTA+TGG | - | chr5.2:29560154-29560173 | None:intergenic | 25.0% |
| ! | TAATGCATACTCAAATTACA+TGG | + | chr5.2:29560722-29560741 | MS.gene78507:intron | 25.0% |
| ! | TACTTACAAAGGATAAACAA+GGG | - | chr5.2:29558566-29558585 | None:intergenic | 25.0% |
| ! | TTAAGACAAAAACAAAACCA+TGG | - | chr5.2:29560351-29560370 | None:intergenic | 25.0% |
| ! | TTATCCTTTAATTCTTCTCT+TGG | - | chr5.2:29559339-29559358 | None:intergenic | 25.0% |
| !! | CTGAAGTAATTGCTAATTTT+TGG | - | chr5.2:29559118-29559137 | None:intergenic | 25.0% |
| !! | GTTTGTTAACAATGTGATTA+TGG | - | chr5.2:29560629-29560648 | None:intergenic | 25.0% |
| !!! | AATTGCTAATTTTTGGTCAA+CGG | - | chr5.2:29559111-29559130 | None:intergenic | 25.0% |
| !!! | TCTTGTGTTTTTTTTTTTGC+AGG | + | chr5.2:29558530-29558549 | MS.gene78507:intron | 25.0% |
| AAACTATGTGATCATGAGAT+TGG | - | chr5.2:29560099-29560118 | None:intergenic | 30.0% | |
| AACAAGTATTTGTACTAGGT+TGG | + | chr5.2:29559622-29559641 | MS.gene78507:intron | 30.0% | |
| AACAATATTCTTGGTCTCTA+TGG | - | chr5.2:29558723-29558742 | None:intergenic | 30.0% | |
| AACCATATGATCATGGTATA+AGG | - | chr5.2:29560172-29560191 | None:intergenic | 30.0% | |
| AACTATGTGATCATGAGATT+GGG | - | chr5.2:29560098-29560117 | None:intergenic | 30.0% | |
| AACTTACACTTCAAGAACTT+TGG | - | chr5.2:29558813-29558832 | None:intergenic | 30.0% | |
| ACAAGTATTTGTACTAGGTT+GGG | + | chr5.2:29559623-29559642 | MS.gene78507:intron | 30.0% | |
| ATCCTTATACCATGATCATA+TGG | + | chr5.2:29560167-29560186 | MS.gene78507:intron | 30.0% | |
| ATGACTAAACCATATGATCA+TGG | - | chr5.2:29560179-29560198 | None:intergenic | 30.0% | |
| ATGTATCTGATCTATACATC+AGG | - | chr5.2:29559143-29559162 | None:intergenic | 30.0% | |
| ATTTGAAAGACTCATCACAA+AGG | + | chr5.2:29561247-29561266 | MS.gene78507:CDS | 30.0% | |
| CAATGGAAATGACTACTTAT+AGG | + | chr5.2:29559697-29559716 | MS.gene78507:intron | 30.0% | |
| GATCATGGTATAAGGATAAT+AGG | - | chr5.2:29560164-29560183 | None:intergenic | 30.0% | |
| GTACTTGAATGAATACCAAT+AGG | + | chr5.2:29559730-29559749 | MS.gene78507:intron | 30.0% | |
| TATCATTGCATTCAAATCTC+GGG | - | chr5.2:29560680-29560699 | None:intergenic | 30.0% | |
| TCAACAAAAACACCATTGAT+AGG | - | chr5.2:29559669-29559688 | None:intergenic | 30.0% | |
| TCAACCAAGAGAAGAATTAA+AGG | + | chr5.2:29559332-29559351 | MS.gene78507:intron | 30.0% | |
| TTGGTCATCAACAATATTCT+TGG | - | chr5.2:29558732-29558751 | None:intergenic | 30.0% | |
| ! | AAAGGTAACGTTTTTCTCTT+TGG | - | chr5.2:29559768-29559787 | None:intergenic | 30.0% |
| ! | AGCAAGAACATCAAAGTTTT+TGG | - | chr5.2:29558427-29558446 | None:intergenic | 30.0% |
| ! | TTTTATGATATTGGAGGCAA+AGG | - | chr5.2:29559786-29559805 | None:intergenic | 30.0% |
| !! | ATATGACTGACTTGTTTCAA+GGG | + | chr5.2:29559872-29559891 | MS.gene78507:intron | 30.0% |
| !! | ATATTGTTGATGACCAACAA+TGG | + | chr5.2:29558735-29558754 | MS.gene78507:CDS | 30.0% |
| !! | TAAGTTTTGACCAAGACAAA+AGG | - | chr5.2:29559085-29559104 | None:intergenic | 30.0% |
| !!! | AGTTGATAGTTGCAATTTTC+AGG | + | chr5.2:29560979-29560998 | MS.gene78507:intron | 30.0% |
| !!! | TTTTTTTTTTTGCAGGCCTT+TGG | + | chr5.2:29558537-29558556 | MS.gene78507:intron | 30.0% |
| AAAGCATGCAAATCATGCTA+AGG | - | chr5.2:29560863-29560882 | None:intergenic | 35.0% | |
| AAATGTTACCCATGTGATCA+CGG | - | chr5.2:29560534-29560553 | None:intergenic | 35.0% | |
| AACTTTGCATAAGGCCAAAT+CGG | - | chr5.2:29561008-29561027 | None:intergenic | 35.0% | |
| AAGTGGTTGTACTCTACTAA+AGG | - | chr5.2:29559292-29559311 | None:intergenic | 35.0% | |
| AATTGTGGGTTCATGTAGAA+TGG | - | chr5.2:29561101-29561120 | None:intergenic | 35.0% | |
| ACTATGGTGAGATCACTATA+AGG | - | chr5.2:29559837-29559856 | None:intergenic | 35.0% | |
| ATCATGGTTGGAACAATTCT+TGG | - | chr5.2:29560439-29560458 | None:intergenic | 35.0% | |
| ATCCATATGATCATGGCATA+TGG | - | chr5.2:29560016-29560035 | None:intergenic | 35.0% | |
| ATGATGTGATCATTGCATTG+AGG | - | chr5.2:29560204-29560223 | None:intergenic | 35.0% | |
| CTCAGTATCAACTTTGCATA+AGG | - | chr5.2:29561017-29561036 | None:intergenic | 35.0% | |
| GGAAATGACTACTTATAGGT+TGG | + | chr5.2:29559701-29559720 | MS.gene78507:intron | 35.0% | |
| GTTGCATTAACATGTCTAGT+AGG | + | chr5.2:29559430-29559449 | MS.gene78507:intron | 35.0% | |
| TAACTATGCGATCAAGTCAT+CGG | - | chr5.2:29559984-29560003 | None:intergenic | 35.0% | |
| TCACATAAAGAATCGCACTA+TGG | - | chr5.2:29559853-29559872 | None:intergenic | 35.0% | |
| TCCATATGATCATGGCATAT+GGG | - | chr5.2:29560015-29560034 | None:intergenic | 35.0% | |
| TGACTAGTGAGAGAAATTTC+AGG | + | chr5.2:29559582-29559601 | MS.gene78507:intron | 35.0% | |
| TGATTATGGAATTGGGTTCA+TGG | - | chr5.2:29560615-29560634 | None:intergenic | 35.0% | |
| TGCAGGTTCAAAATATGAAG+TGG | - | chr5.2:29559309-29559328 | None:intergenic | 35.0% | |
| TTAACATGTCTAGTAGGTTG+TGG | + | chr5.2:29559436-29559455 | MS.gene78507:intron | 35.0% | |
| TTAATCGTTTCGCGTTTAAC+CGG | + | chr5.2:29560475-29560494 | MS.gene78507:intron | 35.0% | |
| TTACTGAATATGTTCTTCCG+TGG | - | chr5.2:29561170-29561189 | None:intergenic | 35.0% | |
| TTGGGTTATCCATATGATCA+TGG | - | chr5.2:29560023-29560042 | None:intergenic | 35.0% | |
| TTTCATATGTCACGATCACT+TGG | + | chr5.2:29560224-29560243 | MS.gene78507:intron | 35.0% | |
| ! | ACTACTTATAGGTTGGATTG+AGG | + | chr5.2:29559708-29559727 | MS.gene78507:intron | 35.0% |
| ! | ATCCATGTGATCATGGTTTT+AGG | - | chr5.2:29559950-29559969 | None:intergenic | 35.0% |
| ! | ATGATCCTTTTCCATTACCA+AGG | - | chr5.2:29560376-29560395 | None:intergenic | 35.0% |
| ! | ATGGATTATCCATGTGATCA+TGG | - | chr5.2:29559957-29559976 | None:intergenic | 35.0% |
| ! | TGATCCTTTTCCATTACCAA+GGG | - | chr5.2:29560375-29560394 | None:intergenic | 35.0% |
| ! | TTGGTTCTTCCTCACTTTAA+TGG | + | chr5.2:29561044-29561063 | MS.gene78507:CDS | 35.0% |
| ! | TTTTGTTGAGAGATGGACAA+TGG | + | chr5.2:29559680-29559699 | MS.gene78507:intron | 35.0% |
| !! | ATGGTGTTTTTGTTGAGAGA+TGG | + | chr5.2:29559673-29559692 | MS.gene78507:intron | 35.0% |
| !! | CAAAGTTGATACTGAGTTGT+TGG | + | chr5.2:29561021-29561040 | MS.gene78507:CDS | 35.0% |
| !! | GATATGACTGACTTGTTTCA+AGG | + | chr5.2:29559871-29559890 | MS.gene78507:intron | 35.0% |
| !!! | TTGTTTTTGTCTTAACCCCT+TGG | + | chr5.2:29560356-29560375 | MS.gene78507:intron | 35.0% |
| AACTATGCGATCAAGTCATC+GGG | - | chr5.2:29559983-29560002 | None:intergenic | 40.0% | |
| AATCCAGAGTTCGATTCAGA+TGG | + | chr5.2:29560399-29560418 | MS.gene78507:intron | 40.0% | |
| ACATTATGGGATTGTGACCT+CGG | - | chr5.2:29560140-29560159 | None:intergenic | 40.0% | |
| ACCAACAATGGCTCACTTAT+TGG | + | chr5.2:29558747-29558766 | MS.gene78507:CDS | 40.0% | |
| ACCCATATGCCATGATCATA+TGG | + | chr5.2:29560011-29560030 | MS.gene78507:intron | 40.0% | |
| ACTTGGTTAATCGATGACTG+TGG | + | chr5.2:29560241-29560260 | MS.gene78507:intron | 40.0% | |
| AGGCAGATATGCTTCAATCA+AGG | + | chr5.2:29558697-29558716 | MS.gene78507:intron | 40.0% | |
| ATGGGGTTAAGTCCTATCAA+TGG | + | chr5.2:29559654-29559673 | MS.gene78507:intron | 40.0% | |
| ATGTGATCATGGTATCGCAA+GGG | - | chr5.2:29560585-29560604 | None:intergenic | 40.0% | |
| CCAACAATGGCTCACTTATT+GGG | + | chr5.2:29558748-29558767 | MS.gene78507:CDS | 40.0% | |
| GAGTTCTTGAGTTCGAATCA+TGG | - | chr5.2:29560455-29560474 | None:intergenic | 40.0% | |
| GGATAAACAAGGGTTACCAA+AGG | - | chr5.2:29558556-29558575 | None:intergenic | 40.0% | |
| GTCTGCACATCAACAACAAT+AGG | - | chr5.2:29561438-29561457 | None:intergenic | 40.0% | |
| GTTGATACTGAGTTGTTGGT+TGG | + | chr5.2:29561025-29561044 | MS.gene78507:CDS | 40.0% | |
| TCTTGAGTTCGAATCATGGT+TGG | - | chr5.2:29560451-29560470 | None:intergenic | 40.0% | |
| TGATAGGACTTAACCCCATT+AGG | - | chr5.2:29559653-29559672 | None:intergenic | 40.0% | |
| TGTTATGGTTACTAACCAGG+TGG | - | chr5.2:29560511-29560530 | None:intergenic | 40.0% | |
| TTATAATAGAGACAGGGCAG+AGG | + | chr5.2:29559199-29559218 | MS.gene78507:intron | 40.0% | |
| TTGTCTTAACCCCTTGGTAA+TGG | + | chr5.2:29560362-29560381 | MS.gene78507:intron | 40.0% | |
| ! | ACAGAGAATCTAAAGCAAGG+AGG | + | chr5.2:29561460-29561479 | MS.gene78507:CDS | 40.0% |
| ! | CTGACAGAGAATCTAAAGCA+AGG | + | chr5.2:29561457-29561476 | MS.gene78507:CDS | 40.0% |
| ! | GAATCTAAAGCAAGGAGGAA+TGG | + | chr5.2:29561465-29561484 | MS.gene78507:CDS | 40.0% |
| ! | GAGAGGTACATGCAAGAAAA+TGG | + | chr5.2:29561215-29561234 | MS.gene78507:CDS | 40.0% |
| ! | GATCCTTTTCCATTACCAAG+GGG | - | chr5.2:29560374-29560393 | None:intergenic | 40.0% |
| ! | GGTAACGTTTTTCTCTTTGG+AGG | - | chr5.2:29559765-29559784 | None:intergenic | 40.0% |
| ! | GGTTTCTTGCTACTTCTGTT+TGG | - | chr5.2:29559363-29559382 | None:intergenic | 40.0% |
| ! | TTGACCAAGACAAAAGGCAT+TGG | - | chr5.2:29559079-29559098 | None:intergenic | 40.0% |
| !! | CAATTTTCAGGCTTCCGATT+TGG | + | chr5.2:29560991-29561010 | MS.gene78507:intron | 40.0% |
| !! | TAACCCCTTGGTAATGGAAA+AGG | + | chr5.2:29560368-29560387 | MS.gene78507:intron | 40.0% |
| !! | TGACCAAGACAAAAGGCATT+GGG | - | chr5.2:29559078-29559097 | None:intergenic | 40.0% |
| ACCATAACACCGTGATCACA+TGG | + | chr5.2:29560522-29560541 | MS.gene78507:intron | 45.0% | |
| AGCGGCATTTGTGGTAATTG+TGG | - | chr5.2:29561116-29561135 | None:intergenic | 45.0% | |
| ATGTTCTTAGTGCTGCAGAG+AGG | + | chr5.2:29561198-29561217 | MS.gene78507:CDS | 45.0% | |
| CATGTGATCATGGTATCGCA+AGG | - | chr5.2:29560586-29560605 | None:intergenic | 45.0% | |
| CATTATGGGATTGTGACCTC+GGG | - | chr5.2:29560139-29560158 | None:intergenic | 45.0% | |
| CCAATCATAACTGAAGGTCG+TGG | - | chr5.2:29559504-29559523 | None:intergenic | 45.0% | |
| CCACGACCTTCAGTTATGAT+TGG | + | chr5.2:29559501-29559520 | MS.gene78507:intron | 45.0% | |
| CCATAACACCGTGATCACAT+GGG | + | chr5.2:29560523-29560542 | MS.gene78507:intron | 45.0% | |
| CCCAATAAGTGAGCCATTGT+TGG | - | chr5.2:29558751-29558770 | None:intergenic | 45.0% | |
| CGCAAATGTGGTATGTTCCA+CGG | + | chr5.2:29561150-29561169 | MS.gene78507:CDS | 45.0% | |
| CTTCTCTTGGTTGAGTTTGC+AGG | - | chr5.2:29559326-29559345 | None:intergenic | 45.0% | |
| CTTGCGATACCATGATCACA+TGG | + | chr5.2:29560584-29560603 | MS.gene78507:intron | 45.0% | |
| GATCATGGCATATGGGTGAT+GGG | - | chr5.2:29560008-29560027 | None:intergenic | 45.0% | |
| GCGGCATTTGTGGTAATTGT+GGG | - | chr5.2:29561115-29561134 | None:intergenic | 45.0% | |
| GGCCTAAAACCATGATCACA+TGG | + | chr5.2:29559945-29559964 | MS.gene78507:intron | 45.0% | |
| GTGATCATGAGATTGGGTCA+TGG | - | chr5.2:29560092-29560111 | None:intergenic | 45.0% | |
| TACCACATTTGCGAAGTTCC+TGG | - | chr5.2:29561143-29561162 | None:intergenic | 45.0% | |
| TATGGATAACCCAAACCTCG+TGG | + | chr5.2:29560029-29560048 | MS.gene78507:intron | 45.0% | |
| TGATCATGGCATATGGGTGA+TGG | - | chr5.2:29560009-29560028 | None:intergenic | 45.0% | |
| ! | ACTAGGTTGGGCTTTCCTAA+TGG | + | chr5.2:29559635-29559654 | MS.gene78507:intron | 45.0% |
| ! | CTAGGTTGGGCTTTCCTAAT+GGG | + | chr5.2:29559636-29559655 | MS.gene78507:intron | 45.0% |
| ! | TAGGTTGGGCTTTCCTAATG+GGG | + | chr5.2:29559637-29559656 | MS.gene78507:intron | 45.0% |
| ! | TGTGCTGCTCCATTAAAGTG+AGG | - | chr5.2:29561056-29561075 | None:intergenic | 45.0% |
| !! | CGGTGTTATGGTTACTAACC+AGG | - | chr5.2:29560514-29560533 | None:intergenic | 45.0% |
| AATCGATGACTGTGGCACCA+TGG | + | chr5.2:29560331-29560350 | MS.gene78507:intron | 50.0% | |
| AATCGATGACTGTGGCACGA+TGG | + | chr5.2:29560249-29560268 | MS.gene78507:intron | 50.0% | |
| ATGTCTAGTAGGTTGTGGCC+AGG | + | chr5.2:29559441-29559460 | MS.gene78507:intron | 50.0% | |
| CAGAGTTCGATTCAGATGGC+AGG | + | chr5.2:29560403-29560422 | MS.gene78507:intron | 50.0% | |
| CGATCAAGTCATCGGGATCA+TGG | - | chr5.2:29559976-29559995 | None:intergenic | 50.0% | |
| CTGCCATCTGAATCGAACTC+TGG | - | chr5.2:29560405-29560424 | None:intergenic | 50.0% | |
| TAACCCAAACCTCGTGGCTA+TGG | + | chr5.2:29560035-29560054 | MS.gene78507:intron | 50.0% | |
| TATAGTTCACCCATGACCCG+AGG | + | chr5.2:29560120-29560139 | MS.gene78507:intron | 50.0% | |
| TGACCATAGCCACGAGGTTT+GGG | - | chr5.2:29560041-29560060 | None:intergenic | 50.0% | |
| TGCCAGGAACTTCGCAAATG+TGG | + | chr5.2:29561138-29561157 | MS.gene78507:CDS | 50.0% | |
| TGCGAAGTTCCTGGCATTAG+CGG | - | chr5.2:29561134-29561153 | None:intergenic | 50.0% | |
| TGGAGGCTTCACTCACCTAT+TGG | - | chr5.2:29559748-29559767 | None:intergenic | 50.0% | |
| TTGATGTGACCATAGCCACG+AGG | - | chr5.2:29560047-29560066 | None:intergenic | 50.0% | |
| ! | AGGCCCAATGCCTTTTGTCT+TGG | + | chr5.2:29559072-29559091 | MS.gene78507:intron | 50.0% |
| ! | CCCATGTGATCACGGTGTTA+TGG | - | chr5.2:29560526-29560545 | None:intergenic | 50.0% |
| !! | ACCAGGTGGTTGATGACTTC+CGG | - | chr5.2:29560497-29560516 | None:intergenic | 50.0% |
| ACCGGAAGTCATCAACCACC+TGG | + | chr5.2:29560493-29560512 | MS.gene78507:intron | 55.0% | |
| CCACAAATGCCGCTAATGCC+AGG | + | chr5.2:29561122-29561141 | MS.gene78507:CDS | 55.0% | |
| CCTGGCATTAGCGGCATTTG+TGG | - | chr5.2:29561125-29561144 | None:intergenic | 55.0% | |
| GGATTGTGACCTCGGGTCAT+GGG | - | chr5.2:29560132-29560151 | None:intergenic | 55.0% | |
| GTGACCATAGCCACGAGGTT+TGG | - | chr5.2:29560042-29560061 | None:intergenic | 55.0% | |
| GGGATTGTGACCTCGGGTCA+TGG | - | chr5.2:29560133-29560152 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 29558387 | 29561524 | 29558387 | ID=MS.gene78507 |
| chr5.2 | mRNA | 29558387 | 29561524 | 29558387 | ID=MS.gene78507.t1;Parent=MS.gene78507 |
| chr5.2 | exon | 29558387 | 29558448 | 29558387 | ID=MS.gene78507.t1.exon1;Parent=MS.gene78507.t1 |
| chr5.2 | CDS | 29558387 | 29558448 | 29558387 | ID=cds.MS.gene78507.t1;Parent=MS.gene78507.t1 |
| chr5.2 | exon | 29558552 | 29558578 | 29558552 | ID=MS.gene78507.t1.exon2;Parent=MS.gene78507.t1 |
| chr5.2 | CDS | 29558552 | 29558578 | 29558552 | ID=cds.MS.gene78507.t1;Parent=MS.gene78507.t1 |
| chr5.2 | exon | 29558703 | 29558825 | 29558703 | ID=MS.gene78507.t1.exon3;Parent=MS.gene78507.t1 |
| chr5.2 | CDS | 29558703 | 29558825 | 29558703 | ID=cds.MS.gene78507.t1;Parent=MS.gene78507.t1 |
| chr5.2 | exon | 29561001 | 29561268 | 29561001 | ID=MS.gene78507.t1.exon4;Parent=MS.gene78507.t1 |
| chr5.2 | CDS | 29561001 | 29561268 | 29561001 | ID=cds.MS.gene78507.t1;Parent=MS.gene78507.t1 |
| chr5.2 | exon | 29561456 | 29561524 | 29561456 | ID=MS.gene78507.t1.exon5;Parent=MS.gene78507.t1 |
| chr5.2 | CDS | 29561456 | 29561524 | 29561456 | ID=cds.MS.gene78507.t1;Parent=MS.gene78507.t1 |
| Gene Sequence |
| Protein sequence |
