Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046942.t1 | RHN53237.1 | 98.4 | 626 | 6 | 1 | 1 | 622 | 1 | 626 | 0.00E+00 | 1300.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046942.t1 | P93484 | 93.7 | 621 | 33 | 2 | 5 | 621 | 4 | 622 | 0.0e+00 | 1236.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046942.t1 | A0A396HQY9 | 98.4 | 626 | 6 | 1 | 1 | 622 | 1 | 626 | 0.0e+00 | 1300.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene046942 | MS.gene91307 | PPI |
| MS.gene44056 | MS.gene046942 | PPI |
| MS.gene046942 | MS.gene91547 | PPI |
| MS.gene046942 | MS.gene005189 | PPI |
| MS.gene024961 | MS.gene046942 | PPI |
| MS.gene046942 | MS.gene71616 | PPI |
| MS.gene046942 | MS.gene92358 | PPI |
| MS.gene046942 | MS.gene024961 | PPI |
| MS.gene046942 | MS.gene40526 | PPI |
| MS.gene046942 | MS.gene52620 | PPI |
| MS.gene96690 | MS.gene046942 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046942.t1 | MTR_5g005100 | 97.125 | 626 | 10 | 2 | 1 | 622 | 1 | 622 | 0.0 | 1257 |
| MS.gene046942.t1 | MTR_1g106940 | 87.745 | 612 | 72 | 2 | 14 | 622 | 21 | 632 | 0.0 | 1133 |
| MS.gene046942.t1 | MTR_1g106940 | 89.336 | 497 | 52 | 1 | 14 | 509 | 21 | 517 | 0.0 | 936 |
| MS.gene046942.t1 | MTR_8g005800 | 66.077 | 622 | 205 | 4 | 1 | 619 | 5 | 623 | 0.0 | 890 |
| MS.gene046942.t1 | MTR_7g073350 | 66.172 | 606 | 196 | 4 | 19 | 619 | 22 | 623 | 0.0 | 868 |
| MS.gene046942.t1 | MTR_2g437910 | 63.322 | 608 | 218 | 3 | 7 | 613 | 8 | 611 | 0.0 | 808 |
| MS.gene046942.t1 | MTR_3g101430 | 76.190 | 42 | 10 | 0 | 19 | 60 | 2 | 43 | 7.39e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046942.t1 | AT2G14740 | 84.463 | 605 | 93 | 1 | 19 | 622 | 24 | 628 | 0.0 | 1097 |
| MS.gene046942.t1 | AT2G14740 | 84.463 | 605 | 93 | 1 | 19 | 622 | 24 | 628 | 0.0 | 1097 |
| MS.gene046942.t1 | AT2G14720 | 83.388 | 608 | 100 | 1 | 16 | 622 | 21 | 628 | 0.0 | 1089 |
| MS.gene046942.t1 | AT2G14720 | 83.388 | 608 | 100 | 1 | 16 | 622 | 21 | 628 | 0.0 | 1089 |
| MS.gene046942.t1 | AT3G52850 | 71.082 | 619 | 174 | 4 | 4 | 620 | 5 | 620 | 0.0 | 928 |
| MS.gene046942.t1 | AT2G30290 | 66.338 | 609 | 201 | 3 | 4 | 609 | 6 | 613 | 0.0 | 894 |
| MS.gene046942.t1 | AT2G30290 | 66.338 | 609 | 201 | 3 | 4 | 609 | 6 | 613 | 0.0 | 893 |
| MS.gene046942.t1 | AT4G20110 | 61.774 | 620 | 223 | 6 | 6 | 617 | 7 | 620 | 0.0 | 821 |
| MS.gene046942.t1 | AT1G30900 | 62.292 | 602 | 221 | 4 | 9 | 610 | 15 | 610 | 0.0 | 810 |
| MS.gene046942.t1 | AT4G20110 | 60.897 | 624 | 225 | 8 | 6 | 617 | 7 | 623 | 0.0 | 805 |
| MS.gene046942.t1 | AT2G34940 | 58.512 | 605 | 244 | 4 | 7 | 611 | 14 | 611 | 0.0 | 764 |
Find 154 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTACAAATATAGAATT+AGG | 0.152074 | 5.4:-400773 | MS.gene046942:CDS |
| ACAATACCCTCTGCTCTTAT+TGG | 0.161645 | 5.4:-403437 | MS.gene046942:CDS |
| CTTTGATGATTGACGTGATT+TGG | 0.258850 | 5.4:+400524 | None:intergenic |
| ATCTTGCTCTTCTTTCAAAA+TGG | 0.266286 | 5.4:+402726 | None:intergenic |
| GTTTCTTTGCTTTGAAGGTT+TGG | 0.273783 | 5.4:-403577 | MS.gene046942:CDS |
| CAACCCTTATTGTTATCTTT+AGG | 0.286744 | 5.4:+403948 | None:intergenic |
| TGCCATTAGTGCTGGGGATA+TGG | 0.300176 | 5.4:-403387 | MS.gene046942:CDS |
| GAACTTCTGCTTGGCTGTCC+AGG | 0.305137 | 5.4:+400546 | None:intergenic |
| CAGTGTCCTACAGGGTTTAA+AGG | 0.310747 | 5.4:-401686 | MS.gene046942:CDS |
| CAGAAAATGCATGTCCGTTC+CGG | 0.315826 | 5.4:+401856 | None:intergenic |
| TGAGGAGCCCTTGATTACTA+TGG | 0.317046 | 5.4:-403507 | MS.gene046942:CDS |
| GACAGTACCATGTTATATAA+TGG | 0.319024 | 5.4:+403183 | None:intergenic |
| ATTGGCTTGGGTATGATTGC+TGG | 0.324545 | 5.4:-400807 | MS.gene046942:CDS |
| AGATTGTTTCTTTGCTTTGA+AGG | 0.325371 | 5.4:-403582 | MS.gene046942:CDS |
| GTGTTTGCAGTCGGTGGACC+TGG | 0.328777 | 5.4:-401918 | MS.gene046942:intron |
| CAGACAATATCGTGGTAAAC+TGG | 0.346061 | 5.4:-402544 | MS.gene046942:CDS |
| TTATCCTAAAGATAACAATA+AGG | 0.350659 | 5.4:-403952 | MS.gene046942:CDS |
| GACAACAAGAGTAGGTAATA+TGG | 0.353003 | 5.4:+402572 | None:intergenic |
| ACAGTACCATGTTATATAAT+GGG | 0.356620 | 5.4:+403184 | None:intergenic |
| TCAGTACTGTTTATGTTGAC+TGG | 0.358105 | 5.4:-404113 | MS.gene046942:CDS |
| GGCTATTTGTTCTGGATTTG+AGG | 0.358996 | 5.4:-402502 | MS.gene046942:CDS |
| GACCATATCCCCAGCACTAA+TGG | 0.375726 | 5.4:+403385 | None:intergenic |
| TCTCCCATGGTTTATGCATT+GGG | 0.390836 | 5.4:+403127 | None:intergenic |
| ATCTCCCATGGTTTATGCAT+TGG | 0.396833 | 5.4:+403126 | None:intergenic |
| AACTTCTGCTTGGCTGTCCA+GGG | 0.402153 | 5.4:+400547 | None:intergenic |
| GACAGTGCGATCGGTAACTT+TGG | 0.403999 | 5.4:-404014 | MS.gene046942:CDS |
| TATCCTAAAGATAACAATAA+GGG | 0.408259 | 5.4:-403951 | MS.gene046942:CDS |
| AGAAAATGCATGTCCGTTCC+GGG | 0.412062 | 5.4:+401857 | None:intergenic |
| TCCACACTCATCGTTACTAT+TGG | 0.418802 | 5.4:+403295 | None:intergenic |
| TGTATACAACTCACTTATAC+AGG | 0.418882 | 5.4:+400985 | None:intergenic |
| AGCAGATGAGACATCCTCTT+CGG | 0.422782 | 5.4:+403478 | None:intergenic |
| AGCACCAGGTTTGGATTTGA+AGG | 0.425579 | 5.4:+403902 | None:intergenic |
| GACTTCAGCACAGGCTATGA+TGG | 0.431165 | 5.4:-403080 | MS.gene046942:CDS |
| GTTAAATGCCAGTGTCCTAC+AGG | 0.432639 | 5.4:-401695 | MS.gene046942:CDS |
| CTGAAGTCCTGCTCAGGATC+CGG | 0.438824 | 5.4:+403095 | None:intergenic |
| GGTAGGAAGAGCACCAGGTT+TGG | 0.440524 | 5.4:+403893 | None:intergenic |
| TTGGGTATGATTGCTGGAGG+GGG | 0.442632 | 5.4:-400801 | MS.gene046942:CDS |
| CTTGGGTATGATTGCTGGAG+GGG | 0.451243 | 5.4:-400802 | MS.gene046942:CDS |
| GCAGATGAGACATCCTCTTC+GGG | 0.459853 | 5.4:+403479 | None:intergenic |
| TTGAAGGATGCCATTAGTGC+TGG | 0.462509 | 5.4:-403395 | MS.gene046942:CDS |
| CGTGATTTGGAACTTCTGCT+TGG | 0.463555 | 5.4:+400537 | None:intergenic |
| GTTTGGAATGCTCAGAAGGC+TGG | 0.467555 | 5.4:-403560 | MS.gene046942:CDS |
| TGTGAATGCCCCTTGGTTGA+TGG | 0.468992 | 5.4:-402175 | MS.gene046942:CDS |
| CAAAAGAAACCGAAAAGCCT+TGG | 0.473973 | 5.4:-403007 | MS.gene046942:CDS |
| CCACTCAGGCAAAATCCACT+TGG | 0.477555 | 5.4:-400851 | MS.gene046942:CDS |
| TCATACTCGACACGATCATC+AGG | 0.477928 | 5.4:+403326 | None:intergenic |
| CAGTACTGTTTATGTTGACT+GGG | 0.477970 | 5.4:-404112 | MS.gene046942:CDS |
| TCAAATTAGATGCCCGATGA+AGG | 0.478586 | 5.4:-402958 | MS.gene046942:CDS |
| CAATACGGTGGTAGCATGGC+TGG | 0.479746 | 5.4:-403984 | MS.gene046942:CDS |
| ACAGTGCGATCGGTAACTTT+GGG | 0.480816 | 5.4:-404013 | MS.gene046942:CDS |
| GTTGATGGTGTTCAATTCAA+AGG | 0.482669 | 5.4:-402160 | MS.gene046942:CDS |
| CCATTGCTCAAACAAACAGC+TGG | 0.487515 | 5.4:+402468 | None:intergenic |
| GGGTGTGTCCATAGTAATCA+AGG | 0.488151 | 5.4:+403499 | None:intergenic |
| TGGTCAATGTTAATCTTGAC+TGG | 0.491505 | 5.4:-403367 | MS.gene046942:CDS |
| GAAGGTTTGGAATGCTCAGA+AGG | 0.501562 | 5.4:-403564 | MS.gene046942:CDS |
| TTCTGAAATCAGAGCAATCA+TGG | 0.503663 | 5.4:-400582 | MS.gene046942:CDS |
| AAAAGAAACCGAAAAGCCTT+GGG | 0.504812 | 5.4:-403006 | MS.gene046942:CDS |
| GTAACTAACTTCCACGATCA+AGG | 0.505995 | 5.4:+403862 | None:intergenic |
| TGTGTACAAATATAGAATTA+GGG | 0.507429 | 5.4:-400772 | MS.gene046942:intron |
| GCTTGGGTATGATTGCTGGA+GGG | 0.509710 | 5.4:-400803 | MS.gene046942:CDS |
| AATGCCGTCATTAAATCTCT+TGG | 0.510279 | 5.4:-402909 | MS.gene046942:intron |
| GGCTTGGGTATGATTGCTGG+AGG | 0.513936 | 5.4:-400804 | MS.gene046942:CDS |
| GATGTCAACGGCGAGATTCG+TGG | 0.513994 | 5.4:-404090 | MS.gene046942:CDS |
| TTGCGCTCCGGATCCTGAGC+AGG | 0.517442 | 5.4:-403102 | MS.gene046942:CDS |
| ACTTCACCTGATAAAATCAA+AGG | 0.519263 | 5.4:-404044 | MS.gene046942:CDS |
| AAACAACGGTGGTTGTTGGC+AGG | 0.520508 | 5.4:-402337 | MS.gene046942:CDS |
| TTGTTGATCTTGCAACGCCC+AGG | 0.522495 | 5.4:+401900 | None:intergenic |
| ATGTGGTTGTTGAAAATTTG+AGG | 0.522629 | 5.4:-403052 | MS.gene046942:CDS |
| AGAACAAATAGCCTTTAAAA+CGG | 0.523531 | 5.4:+402512 | None:intergenic |
| TCTTCCTTCAAATCCAAACC+TGG | 0.527152 | 5.4:-403906 | MS.gene046942:CDS |
| AACTTTGGGATTCCTCAATA+CGG | 0.529300 | 5.4:-403999 | MS.gene046942:CDS |
| CCGAAAAGCCTTGGGTGTGG+TGG | 0.530784 | 5.4:-402998 | MS.gene046942:CDS |
| TGAAGGATGCCATTAGTGCT+GGG | 0.532526 | 5.4:-403394 | MS.gene046942:CDS |
| CCTGTGCTGAAGTCCTGCTC+AGG | 0.540657 | 5.4:+403089 | None:intergenic |
| TGGAGATCTTCTGTATATCA+AGG | 0.544120 | 5.4:-401017 | MS.gene046942:CDS |
| TCCTCAATACGGTGGTAGCA+TGG | 0.544648 | 5.4:-403988 | MS.gene046942:CDS |
| TGCAAAGATTGACAAGTGCA+TGG | 0.545637 | 5.4:-402776 | MS.gene046942:CDS |
| ACTCACTTATACAGGTATCA+TGG | 0.546171 | 5.4:+400993 | None:intergenic |
| CTTCACCTGATAAAATCAAA+GGG | 0.549712 | 5.4:-404043 | MS.gene046942:CDS |
| GAGGATGTTGGCATGATGCC+CGG | 0.553226 | 5.4:-401875 | MS.gene046942:CDS |
| CACTCAGGCAAAATCCACTT+GGG | 0.554270 | 5.4:-400850 | MS.gene046942:CDS |
| GCCATGCTACCACCGTATTG+AGG | 0.554564 | 5.4:+403987 | None:intergenic |
| CTGTTATTGACAACAAGAGT+AGG | 0.558861 | 5.4:+402564 | None:intergenic |
| GGTGGAGAAGAACAGCTTGT+CGG | 0.558947 | 5.4:-404069 | MS.gene046942:CDS |
| TGACAAACAACGGTGGTTGT+TGG | 0.559077 | 5.4:-402341 | MS.gene046942:CDS |
| TACAGGTAAAACTGCCACTC+AGG | 0.560521 | 5.4:-400865 | MS.gene046942:intron |
| CCTGAGCAGGACTTCAGCAC+AGG | 0.560984 | 5.4:-403089 | MS.gene046942:CDS |
| ACTCGTTGCCGATGATATTG+AGG | 0.563097 | 5.4:-403525 | MS.gene046942:CDS |
| AGCTAATATCACTGCATGCA+AGG | 0.568003 | 5.4:-402307 | MS.gene046942:intron |
| CCTACAGGGTTTAAAGGTGA+TGG | 0.569016 | 5.4:-401680 | MS.gene046942:CDS |
| GCAGCACAGATCTTAGAGAA+AGG | 0.570785 | 5.4:-403227 | MS.gene046942:CDS |
| TGTTTGCAGTCGGTGGACCT+GGG | 0.574779 | 5.4:-401917 | MS.gene046942:intron |
| ACTTCAGCACAGGCTATGAT+GGG | 0.575024 | 5.4:-403079 | MS.gene046942:CDS |
| AGATCAACAATGGAGGATGT+TGG | 0.577792 | 5.4:-401887 | MS.gene046942:CDS |
| GGTGTTCAATTCAAAGGAGA+CGG | 0.578646 | 5.4:-402154 | MS.gene046942:CDS |
| CGAAAAGCCTTGGGTGTGGT+GGG | 0.579998 | 5.4:-402997 | MS.gene046942:CDS |
| AGCTATGACTGCAGTTGTAG+TGG | 0.582229 | 5.4:-401037 | MS.gene046942:CDS |
| TATCGTGGTAAACTGGAGAA+AGG | 0.582709 | 5.4:-402537 | MS.gene046942:CDS |
| CAAGGGCTCCTCAATATCAT+CGG | 0.583903 | 5.4:+403517 | None:intergenic |
| CCATGGGAGATATTGCGCTC+CGG | 0.584021 | 5.4:-403114 | MS.gene046942:CDS |
| TTGTTGTGTAAACAGGATGA+TGG | 0.587216 | 5.4:-401722 | MS.gene046942:intron |
| ACTTCTGCTTGGCTGTCCAG+GGG | 0.591243 | 5.4:+400548 | None:intergenic |
| CTTTAAACCCTGTAGGACAC+TGG | 0.592362 | 5.4:+401687 | None:intergenic |
| ACCATCCTTCTCCTTGATCG+TGG | 0.593790 | 5.4:-403873 | MS.gene046942:CDS |
| CCAGCTGTTTGTTTGAGCAA+TGG | 0.595530 | 5.4:-402468 | MS.gene046942:intron |
| GGGAAACATGACAGTGCGAT+CGG | 0.595812 | 5.4:-404023 | MS.gene046942:CDS |
| GCGAGTATGTGAATGCCCCT+TGG | 0.597573 | 5.4:-402182 | MS.gene046942:CDS |
| GAATTGAACACCATCAACCA+AGG | 0.597885 | 5.4:+402165 | None:intergenic |
| CATGGCACAATATATGCCCC+TGG | 0.598457 | 5.4:-400564 | MS.gene046942:CDS |
| CCGGAGCGCAATATCTCCCA+TGG | 0.600947 | 5.4:+403114 | None:intergenic |
| TAATTCTATATTTGTACACA+AGG | 0.601328 | 5.4:+400775 | None:intergenic |
| ATCTGCCAGGATACATTCCG+TGG | 0.601733 | 5.4:-402205 | MS.gene046942:intron |
| GCAAAGATTGACAAGTGCAT+GGG | 0.604142 | 5.4:-402775 | MS.gene046942:CDS |
| AAACCGAAAAGCCTTGGGTG+TGG | 0.605855 | 5.4:-403001 | MS.gene046942:CDS |
| AACTTCCACGATCAAGGAGA+AGG | 0.607585 | 5.4:+403868 | None:intergenic |
| GACGGTTATACAACTTGTGA+AGG | 0.609305 | 5.4:-402136 | MS.gene046942:intron |
| CGATCAAGGAGAAGGATGGT+AGG | 0.611973 | 5.4:+403876 | None:intergenic |
| TACTATGGACACACCCGAAG+AGG | 0.615995 | 5.4:-403492 | MS.gene046942:CDS |
| CATTGCTCAAACAAACAGCT+GGG | 0.621538 | 5.4:+402469 | None:intergenic |
| AGGATGGTAGGAAGAGCACC+AGG | 0.624048 | 5.4:+403888 | None:intergenic |
| AATTGAACACCATCAACCAA+GGG | 0.625423 | 5.4:+402166 | None:intergenic |
| AAGTCCCAATGCATAAACCA+TGG | 0.629265 | 5.4:-403131 | MS.gene046942:CDS |
| TCGACACGATCATCAGGATG+AGG | 0.631218 | 5.4:+403332 | None:intergenic |
| TCAGAAGGCTGGAGCTTCTG+CGG | 0.634092 | 5.4:-403549 | MS.gene046942:CDS |
| TGTTAATCTTGACTGGAGAG+AGG | 0.634616 | 5.4:-403360 | MS.gene046942:CDS |
| TATGTTGACTGGGATGTCAA+CGG | 0.636136 | 5.4:-404102 | MS.gene046942:CDS |
| GGGCGTTGCAAGATCAACAA+TGG | 0.636889 | 5.4:-401897 | MS.gene046942:CDS |
| GGCATTCACATACTCGCCCA+CGG | 0.638497 | 5.4:+402188 | None:intergenic |
| GTCAATAACAGACAATATCG+TGG | 0.638925 | 5.4:-402552 | MS.gene046942:CDS |
| ACATAGTCCCACCACACCCA+AGG | 0.638979 | 5.4:+402990 | None:intergenic |
| AGTCCCAATGCATAAACCAT+GGG | 0.639703 | 5.4:-403130 | MS.gene046942:CDS |
| TGTTGGCATGATGCCCGGAA+CGG | 0.640813 | 5.4:-401870 | MS.gene046942:CDS |
| CAGTACCATGTTATATAATG+GGG | 0.643079 | 5.4:+403185 | None:intergenic |
| TTACACCCCATTATATAACA+TGG | 0.646628 | 5.4:-403190 | MS.gene046942:CDS |
| TCCACGATCAAGGAGAAGGA+TGG | 0.649403 | 5.4:+403872 | None:intergenic |
| TTAAATGCCAGTGTCCTACA+GGG | 0.651425 | 5.4:-401694 | MS.gene046942:CDS |
| GAAGGATGCCATTAGTGCTG+GGG | 0.652649 | 5.4:-403393 | MS.gene046942:CDS |
| AATGAGTGCTTGACAAACAA+CGG | 0.653519 | 5.4:-402351 | MS.gene046942:CDS |
| GCACAGATCTTAGAGAAAGG+AGG | 0.654803 | 5.4:-403224 | MS.gene046942:CDS |
| CCATCACCTTTAAACCCTGT+AGG | 0.658035 | 5.4:+401680 | None:intergenic |
| CGTTGCAAGATCAACAATGG+AGG | 0.658097 | 5.4:-401894 | MS.gene046942:CDS |
| GGTGTGTCCATAGTAATCAA+GGG | 0.660123 | 5.4:+403500 | None:intergenic |
| ACCAATAGTAACGATGAGTG+TGG | 0.674003 | 5.4:-403296 | MS.gene046942:CDS |
| TTACTCAATGTAAACGCGTG+AGG | 0.679088 | 5.4:+403161 | None:intergenic |
| TCTGCCAGGATACATTCCGT+GGG | 0.680496 | 5.4:-402204 | MS.gene046942:intron |
| TTGTGTAAACAGGATGATGG+AGG | 0.686610 | 5.4:-401719 | MS.gene046942:intron |
| TTTGGGATTCCTCAATACGG+TGG | 0.689306 | 5.4:-403996 | MS.gene046942:CDS |
| CTGACCAAGAGATTTAATGA+CGG | 0.696138 | 5.4:+402905 | None:intergenic |
| GTCAACGGCGAGATTCGTGG+TGG | 0.699652 | 5.4:-404087 | MS.gene046942:CDS |
| AGGCTATGATGGGAAAGATG+TGG | 0.711715 | 5.4:-403069 | MS.gene046942:CDS |
| ATCGTGTCGAGTATGAGTTG+TGG | 0.711953 | 5.4:-403319 | MS.gene046942:CDS |
| TAGATTGGGAAGGGATCACG+CGG | 0.718440 | 5.4:-402603 | MS.gene046942:CDS |
| ATTGAACACCATCAACCAAG+GGG | 0.734010 | 5.4:+402167 | None:intergenic |
| GAGTGCTTGACAAACAACGG+TGG | 0.815477 | 5.4:-402348 | MS.gene046942:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTAACTATTAAATTTAT+TGG | - | chr5.4:402827-402846 | MS.gene046942:intron | 10.0% |
| !!! | ATTTTAAATGAAATAAAGTT+TGG | + | chr5.4:402853-402872 | None:intergenic | 10.0% |
| !! | AAAATATTAAAAACAGAATG+AGG | + | chr5.4:403120-403139 | None:intergenic | 15.0% |
| !! | AATATTATTAATAGAATCGA+TGG | - | chr5.4:403201-403220 | MS.gene046942:CDS | 15.0% |
| !! | AGATAAACATAATAAGAATA+TGG | + | chr5.4:401841-401860 | None:intergenic | 15.0% |
| !! | TAAACTAAAAGCAATTATAA+AGG | + | chr5.4:401964-401983 | None:intergenic | 15.0% |
| !! | TAACTAAAAAAAAAGAAAGA+AGG | + | chr5.4:400824-400843 | None:intergenic | 15.0% |
| !! | TGAAATAATAAATTTATTGG+TGG | - | chr5.4:404027-404046 | MS.gene046942:CDS | 15.0% |
| !!! | AATTCCAAATTTTTTTATAG+TGG | + | chr5.4:403492-403511 | None:intergenic | 15.0% |
| !!! | TAAAATGTTTGTAGTTTTAT+TGG | - | chr5.4:402867-402886 | MS.gene046942:intron | 15.0% |
| !!! | TTTTCCACTATAAAAAAATT+TGG | - | chr5.4:403485-403504 | MS.gene046942:CDS | 15.0% |
| !! | AGTAATTCAGTTTCTAATTT+GGG | + | chr5.4:402902-402921 | None:intergenic | 20.0% |
| !! | ATTTAACATTGTAAGAACAT+AGG | + | chr5.4:402426-402445 | None:intergenic | 20.0% |
| !! | TAATTCTATATTTGTACACA+AGG | + | chr5.4:403879-403898 | None:intergenic | 20.0% |
| !! | TAGTAATTCAGTTTCTAATT+TGG | + | chr5.4:402903-402922 | None:intergenic | 20.0% |
| !! | TATCCTAAAGATAACAATAA+GGG | - | chr5.4:400700-400719 | MS.gene046942:intron | 20.0% |
| !! | TATTTGTGAGATACTAAATT+GGG | + | chr5.4:400923-400942 | None:intergenic | 20.0% |
| !! | TGTGTACAAATATAGAATTA+GGG | - | chr5.4:403879-403898 | MS.gene046942:CDS | 20.0% |
| !! | TTATCCTAAAGATAACAATA+AGG | - | chr5.4:400699-400718 | MS.gene046942:intron | 20.0% |
| !! | TTATTTGTGAGATACTAAAT+TGG | + | chr5.4:400924-400943 | None:intergenic | 20.0% |
| !! | TTGTGTACAAATATAGAATT+AGG | - | chr5.4:403878-403897 | MS.gene046942:CDS | 20.0% |
| !!! | GATAAATTTCTAAAGCATTA+TGG | - | chr5.4:403951-403970 | MS.gene046942:CDS | 20.0% |
| !!! | TGCTTTAGAAATTTATCAAT+TGG | + | chr5.4:403948-403967 | None:intergenic | 20.0% |
| ! | AAAAATAGCATGGAGAAATT+TGG | + | chr5.4:400953-400972 | None:intergenic | 25.0% |
| ! | AAACAAGAACGTGTAAATTT+AGG | + | chr5.4:403711-403730 | None:intergenic | 25.0% |
| ! | AAACAGACTTTCTAATAACA+CGG | - | chr5.4:402382-402401 | MS.gene046942:intron | 25.0% |
| ! | AATTATAAAGGACGTTACTT+GGG | + | chr5.4:401952-401971 | None:intergenic | 25.0% |
| ! | ACAGTACCATGTTATATAAT+GGG | + | chr5.4:401470-401489 | None:intergenic | 25.0% |
| ! | ATTATAACATAGGGACTAAA+GGG | - | chr5.4:400997-401016 | MS.gene046942:intron | 25.0% |
| ! | TCTACAGTATAAAAATAGCA+TGG | + | chr5.4:400963-400982 | None:intergenic | 25.0% |
| ! | TTCTTATTATGTTTATCTGC+AGG | - | chr5.4:401843-401862 | MS.gene046942:intron | 25.0% |
| !! | ACGCAAAATTGATTTCTAAA+GGG | - | chr5.4:402567-402586 | MS.gene046942:CDS | 25.0% |
| !! | AGAACAAATAGCCTTTAAAA+CGG | + | chr5.4:402142-402161 | None:intergenic | 25.0% |
| !! | CAAAATGGAATTTTCAGAAT+CGG | + | chr5.4:401913-401932 | None:intergenic | 25.0% |
| !!! | CGTAGATTTTTTTATGAAAC+TGG | - | chr5.4:402020-402039 | MS.gene046942:intron | 25.0% |
| !!! | TATGTTGATTGAGTTTTTGA+AGG | - | chr5.4:401390-401409 | MS.gene046942:intron | 25.0% |
| ACACATATTGTTGTGTAAAC+AGG | - | chr5.4:402922-402941 | MS.gene046942:CDS | 30.0% | |
| ACTTCACCTGATAAAATCAA+AGG | - | chr5.4:400607-400626 | MS.gene046942:intron | 30.0% | |
| ATCTTGCTCTTCTTTCAAAA+TGG | + | chr5.4:401928-401947 | None:intergenic | 30.0% | |
| ATGTGGTTGTTGAAAATTTG+AGG | - | chr5.4:401599-401618 | MS.gene046942:intron | 30.0% | |
| CAACCCTTATTGTTATCTTT+AGG | + | chr5.4:400706-400725 | None:intergenic | 30.0% | |
| CAATTATAAAGGACGTTACT+TGG | + | chr5.4:401953-401972 | None:intergenic | 30.0% | |
| CAGTACCATGTTATATAATG+GGG | + | chr5.4:401469-401488 | None:intergenic | 30.0% | |
| CATTATAACATAGGGACTAA+AGG | - | chr5.4:400996-401015 | MS.gene046942:intron | 30.0% | |
| CTTCACCTGATAAAATCAAA+GGG | - | chr5.4:400608-400627 | MS.gene046942:intron | 30.0% | |
| GACAGTACCATGTTATATAA+TGG | + | chr5.4:401471-401490 | None:intergenic | 30.0% | |
| GATGGTGTAAAAAATTGTGA+AGG | - | chr5.4:402989-403008 | MS.gene046942:CDS | 30.0% | |
| GTAAAAAATTGTGAAGGTGA+GGG | - | chr5.4:402995-403014 | MS.gene046942:CDS | 30.0% | |
| TACAATGTTAAATATCTGCC+AGG | - | chr5.4:402433-402452 | MS.gene046942:intron | 30.0% | |
| TAGTCCCTATGTTATAATGA+GGG | + | chr5.4:400995-401014 | None:intergenic | 30.0% | |
| TAGTCCCTCATTATAACATA+GGG | - | chr5.4:400988-401007 | MS.gene046942:intron | 30.0% | |
| TGTAAAAAATTGTGAAGGTG+AGG | - | chr5.4:402994-403013 | MS.gene046942:CDS | 30.0% | |
| TGTATACAACTCACTTATAC+AGG | + | chr5.4:403669-403688 | None:intergenic | 30.0% | |
| TTACACCCCATTATATAACA+TGG | - | chr5.4:401461-401480 | MS.gene046942:intron | 30.0% | |
| TTACCTGTAGATTATACAGT+AGG | + | chr5.4:403775-403794 | None:intergenic | 30.0% | |
| TTAGTCCCTATGTTATAATG+AGG | + | chr5.4:400996-401015 | None:intergenic | 30.0% | |
| TTAGTCCCTCATTATAACAT+AGG | - | chr5.4:400987-401006 | MS.gene046942:intron | 30.0% | |
| TTTACTTACCTTTGGTACAA+GGG | - | chr5.4:402212-402231 | MS.gene046942:intron | 30.0% | |
| ! | AATCAATTTTGCGTGCATAA+AGG | + | chr5.4:402561-402580 | None:intergenic | 30.0% |
| ! | AGAGAGGAGATAACATATTT+TGG | + | chr5.4:403300-403319 | None:intergenic | 30.0% |
| ! | AGATTGTTTCTTTGCTTTGA+AGG | - | chr5.4:401069-401088 | MS.gene046942:CDS | 30.0% |
| ! | CACGCAAAATTGATTTCTAA+AGG | - | chr5.4:402566-402585 | MS.gene046942:CDS | 30.0% |
| ! | GCTCTTATTGGAAAAACTTT+TGG | - | chr5.4:401226-401245 | MS.gene046942:intron | 30.0% |
| ! | TATAGTGGAAAACATTCACT+AGG | + | chr5.4:403477-403496 | None:intergenic | 30.0% |
| !! | ATATTTTGGACAAAAGAGAG+AGG | + | chr5.4:403286-403305 | None:intergenic | 30.0% |
| !! | CTCAGTTTGGTGATTTTATT+GGG | - | chr5.4:403920-403939 | MS.gene046942:CDS | 30.0% |
| !! | GAGTTTTTGAAGGATTTCAA+GGG | - | chr5.4:401400-401419 | MS.gene046942:intron | 30.0% |
| !! | TCTCAGTTTGGTGATTTTAT+TGG | - | chr5.4:403919-403938 | MS.gene046942:CDS | 30.0% |
| !! | TGAGTTTTTGAAGGATTTCA+AGG | - | chr5.4:401399-401418 | MS.gene046942:intron | 30.0% |
| !! | TGTTTCCCTTTGATTTTATC+AGG | + | chr5.4:400616-400635 | None:intergenic | 30.0% |
| !!! | ATGAAACTGGTTTTGTAGAT+TGG | - | chr5.4:402033-402052 | MS.gene046942:intron | 30.0% |
| !!! | GCTTTTTGGGTTATTTTGAT+TGG | - | chr5.4:403826-403845 | MS.gene046942:intron | 30.0% |
| !!! | GTTTTAAAGGCTATTTGTTC+TGG | - | chr5.4:402141-402160 | MS.gene046942:CDS | 30.0% |
| !!! | TGAAACTGGTTTTGTAGATT+GGG | - | chr5.4:402034-402053 | MS.gene046942:intron | 30.0% |
| !!! | TTGTACTTTTTCTCCTTCAT+CGG | + | chr5.4:401709-401728 | None:intergenic | 30.0% |
| AAAAGAAACCGAAAAGCCTT+GGG | - | chr5.4:401645-401664 | MS.gene046942:intron | 35.0% | |
| AAGTAGCGAAGAATCAATCA+AGG | + | chr5.4:400883-400902 | None:intergenic | 35.0% | |
| AATCTCAGCAAGTGAAACAT+TGG | - | chr5.4:403347-403366 | MS.gene046942:CDS | 35.0% | |
| AATGAGTGCTTGACAAACAA+CGG | - | chr5.4:402300-402319 | MS.gene046942:intron | 35.0% | |
| AATGCCGTCATTAAATCTCT+TGG | - | chr5.4:401742-401761 | MS.gene046942:intron | 35.0% | |
| AATGTAGCTGCAAAAACACT+TGG | - | chr5.4:403588-403607 | MS.gene046942:intron | 35.0% | |
| AATTGAACACCATCAACCAA+GGG | + | chr5.4:402488-402507 | None:intergenic | 35.0% | |
| ACAACAAAGTAAGCAAGTCA+TGG | + | chr5.4:403990-404009 | None:intergenic | 35.0% | |
| ACTCACTTATACAGGTATCA+TGG | + | chr5.4:403661-403680 | None:intergenic | 35.0% | |
| AGAAGTGAAGGCAATAAACA+TGG | + | chr5.4:402608-402627 | None:intergenic | 35.0% | |
| AGATACTAAATTGGGCATCT+AGG | + | chr5.4:400915-400934 | None:intergenic | 35.0% | |
| AGCAAAGAAACAATCTGCAA+AGG | + | chr5.4:401065-401084 | None:intergenic | 35.0% | |
| AGTACTTCATGCTTCAATCT+GGG | - | chr5.4:403247-403266 | MS.gene046942:CDS | 35.0% | |
| ATGTAGCTGCAAAAACACTT+GGG | - | chr5.4:403589-403608 | MS.gene046942:intron | 35.0% | |
| CAACAAAGTAAGCAAGTCAT+GGG | + | chr5.4:403989-404008 | None:intergenic | 35.0% | |
| CAGAATGAGGATTCTATTCA+TGG | + | chr5.4:403107-403126 | None:intergenic | 35.0% | |
| CTGACCAAGAGATTTAATGA+CGG | + | chr5.4:401749-401768 | None:intergenic | 35.0% | |
| CTGTTATTGACAACAAGAGT+AGG | + | chr5.4:402090-402109 | None:intergenic | 35.0% | |
| GACAACAAGAGTAGGTAATA+TGG | + | chr5.4:402082-402101 | None:intergenic | 35.0% | |
| GGTAAGTGTTTACTTACCTT+TGG | - | chr5.4:402204-402223 | MS.gene046942:intron | 35.0% | |
| GTCAATAACAGACAATATCG+TGG | - | chr5.4:402099-402118 | MS.gene046942:intron | 35.0% | |
| GTTTACTTACCTTTGGTACA+AGG | - | chr5.4:402211-402230 | MS.gene046942:intron | 35.0% | |
| TACAACTTGTGAAGGTGAAA+TGG | - | chr5.4:402523-402542 | MS.gene046942:CDS | 35.0% | |
| TAGTACTTCATGCTTCAATC+TGG | - | chr5.4:403246-403265 | MS.gene046942:CDS | 35.0% | |
| TCAGTACTGTTTATGTTGAC+TGG | - | chr5.4:400538-400557 | MS.gene046942:CDS | 35.0% | |
| TCTCCTACTGTATAATCTAC+AGG | - | chr5.4:403769-403788 | MS.gene046942:intron | 35.0% | |
| TGGAGATCTTCTGTATATCA+AGG | - | chr5.4:403634-403653 | MS.gene046942:intron | 35.0% | |
| TGGTCAATGTTAATCTTGAC+TGG | - | chr5.4:401284-401303 | MS.gene046942:intron | 35.0% | |
| TTGTTGTGTAAACAGGATGA+TGG | - | chr5.4:402929-402948 | MS.gene046942:CDS | 35.0% | |
| ! | AACTTTTGGTCAGAAGTTGA+AGG | - | chr5.4:401240-401259 | MS.gene046942:intron | 35.0% |
| ! | ACATGCATTTTCTGCTTGTT+TGG | - | chr5.4:402804-402823 | MS.gene046942:intron | 35.0% |
| ! | AGTTTTTCCAATAAGAGCAG+AGG | + | chr5.4:401224-401243 | None:intergenic | 35.0% |
| ! | CAGTACTGTTTATGTTGACT+GGG | - | chr5.4:400539-400558 | MS.gene046942:CDS | 35.0% |
| ! | CTTTGATGATTGACGTGATT+TGG | + | chr5.4:404130-404149 | None:intergenic | 35.0% |
| ! | GAAGGAGAAAAAGTACAACA+AGG | - | chr5.4:401711-401730 | MS.gene046942:intron | 35.0% |
| ! | GTTTTTCCAATAAGAGCAGA+GGG | + | chr5.4:401223-401242 | None:intergenic | 35.0% |
| ! | TTATGTTTTCTTGCAGTCGT+TGG | - | chr5.4:401785-401804 | MS.gene046942:intron | 35.0% |
| !! | AACTTTGGGATTCCTCAATA+CGG | - | chr5.4:400652-400671 | MS.gene046942:intron | 35.0% |
| !! | GAAACATTGGCTTCTATACT+TGG | - | chr5.4:403360-403379 | MS.gene046942:CDS | 35.0% |
| !! | GTTGATGGTGTTCAATTCAA+AGG | - | chr5.4:402491-402510 | MS.gene046942:CDS | 35.0% |
| !! | GTTTCTTTGCTTTGAAGGTT+TGG | - | chr5.4:401074-401093 | MS.gene046942:CDS | 35.0% |
| !! | TGTTTTTGCAGCTACATTCA+GGG | + | chr5.4:403586-403605 | None:intergenic | 35.0% |
| !! | TTCTGAAATCAGAGCAATCA+TGG | - | chr5.4:404069-404088 | MS.gene046942:CDS | 35.0% |
| !!! | TGGGTTATTTTGATTGGCTT+GGG | - | chr5.4:403832-403851 | MS.gene046942:intron | 35.0% |
| !!! | TGTACTTTTTCTCCTTCATC+GGG | + | chr5.4:401708-401727 | None:intergenic | 35.0% |
| !!! | TTGGGTTATTTTGATTGGCT+TGG | - | chr5.4:403831-403850 | MS.gene046942:intron | 35.0% |
| AAGTCCCAATGCATAAACCA+TGG | - | chr5.4:401520-401539 | MS.gene046942:intron | 40.0% | |
| AATCACGATCCTTTAGCTGA+GGG | - | chr5.4:402651-402670 | MS.gene046942:intron | 40.0% | |
| ACAACACAGCATAGAAGTGA+AGG | + | chr5.4:402620-402639 | None:intergenic | 40.0% | |
| ACAATACCCTCTGCTCTTAT+TGG | - | chr5.4:401214-401233 | MS.gene046942:intron | 40.0% | |
| ACCAATAGTAACGATGAGTG+TGG | - | chr5.4:401355-401374 | MS.gene046942:intron | 40.0% | |
| AGATCAACAATGGAGGATGT+TGG | - | chr5.4:402764-402783 | MS.gene046942:CDS | 40.0% | |
| AGCTAATATCACTGCATGCA+AGG | - | chr5.4:402344-402363 | MS.gene046942:CDS | 40.0% | |
| AGGGACTAAAGGGATCAAAA+TGG | - | chr5.4:401007-401026 | MS.gene046942:CDS | 40.0% | |
| AGTCCCAATGCATAAACCAT+GGG | - | chr5.4:401521-401540 | MS.gene046942:intron | 40.0% | |
| ATCTCCCATGGTTTATGCAT+TGG | + | chr5.4:401528-401547 | None:intergenic | 40.0% | |
| ATTCAGAAAGCTACAGAGCA+GGG | + | chr5.4:403053-403072 | None:intergenic | 40.0% | |
| ATTGAACACCATCAACCAAG+GGG | + | chr5.4:402487-402506 | None:intergenic | 40.0% | |
| CAAAAGAAACCGAAAAGCCT+TGG | - | chr5.4:401644-401663 | MS.gene046942:intron | 40.0% | |
| CACAGGAAATCAGAAGAATG+AGG | + | chr5.4:402266-402285 | None:intergenic | 40.0% | |
| CAGACAATATCGTGGTAAAC+TGG | - | chr5.4:402107-402126 | MS.gene046942:intron | 40.0% | |
| CATTGCTCAAACAAACAGCT+GGG | + | chr5.4:402185-402204 | None:intergenic | 40.0% | |
| GAATTGAACACCATCAACCA+AGG | + | chr5.4:402489-402508 | None:intergenic | 40.0% | |
| GACGGTTATACAACTTGTGA+AGG | - | chr5.4:402515-402534 | MS.gene046942:CDS | 40.0% | |
| GCAAAGATTGACAAGTGCAT+GGG | - | chr5.4:401876-401895 | MS.gene046942:CDS | 40.0% | |
| GCATATTTCCCTTGTACCAA+AGG | + | chr5.4:402223-402242 | None:intergenic | 40.0% | |
| GGGACTAAAGGGATCAAAAT+GGG | - | chr5.4:401008-401027 | MS.gene046942:CDS | 40.0% | |
| GGTGTGTCCATAGTAATCAA+GGG | + | chr5.4:401154-401173 | None:intergenic | 40.0% | |
| GGTGTTCAATTCAAAGGAGA+CGG | - | chr5.4:402497-402516 | MS.gene046942:CDS | 40.0% | |
| GTAACTAACTTCCACGATCA+AGG | + | chr5.4:400792-400811 | None:intergenic | 40.0% | |
| GTTTCTTCTGTGTTTGCAGT+CGG | - | chr5.4:402724-402743 | MS.gene046942:CDS | 40.0% | |
| TAATCACGATCCTTTAGCTG+AGG | - | chr5.4:402650-402669 | MS.gene046942:intron | 40.0% | |
| TATCGTGGTAAACTGGAGAA+AGG | - | chr5.4:402114-402133 | MS.gene046942:intron | 40.0% | |
| TATTCAGAAAGCTACAGAGC+AGG | + | chr5.4:403054-403073 | None:intergenic | 40.0% | |
| TCAAATTAGATGCCCGATGA+AGG | - | chr5.4:401693-401712 | MS.gene046942:CDS | 40.0% | |
| TCCACACTCATCGTTACTAT+TGG | + | chr5.4:401359-401378 | None:intergenic | 40.0% | |
| TCTATGCTGTGTTGTGCATA+GGG | - | chr5.4:402625-402644 | MS.gene046942:intron | 40.0% | |
| TCTCCCATGGTTTATGCATT+GGG | + | chr5.4:401527-401546 | None:intergenic | 40.0% | |
| TCTTCCTTCAAATCCAAACC+TGG | - | chr5.4:400745-400764 | MS.gene046942:intron | 40.0% | |
| TGCAAAGATTGACAAGTGCA+TGG | - | chr5.4:401875-401894 | MS.gene046942:CDS | 40.0% | |
| TGTAGCTGCAAAAACACTTG+GGG | - | chr5.4:403590-403609 | MS.gene046942:intron | 40.0% | |
| TGTTAATCTTGACTGGAGAG+AGG | - | chr5.4:401291-401310 | MS.gene046942:intron | 40.0% | |
| TTAAATGCCAGTGTCCTACA+GGG | - | chr5.4:402957-402976 | MS.gene046942:CDS | 40.0% | |
| TTACTCAATGTAAACGCGTG+AGG | + | chr5.4:401493-401512 | None:intergenic | 40.0% | |
| TTCTATGCTGTGTTGTGCAT+AGG | - | chr5.4:402624-402643 | MS.gene046942:intron | 40.0% | |
| ! | GAATTTTCAGAATCGGCATC+AGG | + | chr5.4:401906-401925 | None:intergenic | 40.0% |
| ! | GGCTATTTGTTCTGGATTTG+AGG | - | chr5.4:402149-402168 | MS.gene046942:CDS | 40.0% |
| ! | TATGTTGACTGGGATGTCAA+CGG | - | chr5.4:400549-400568 | MS.gene046942:CDS | 40.0% |
| ! | TTGTGTAAACAGGATGATGG+AGG | - | chr5.4:402932-402951 | MS.gene046942:CDS | 40.0% |
| !! | GTGTTTTTGCAGCTACATTC+AGG | + | chr5.4:403587-403606 | None:intergenic | 40.0% |
| !!! | ACTGGTTTTGTAGATTGGGA+AGG | - | chr5.4:402038-402057 | MS.gene046942:intron | 40.0% |
| !!! | CTGGTTTTGTAGATTGGGAA+GGG | - | chr5.4:402039-402058 | MS.gene046942:intron | 40.0% |
| AACTTCCACGATCAAGGAGA+AGG | + | chr5.4:400786-400805 | None:intergenic | 45.0% | |
| ACAGTGCGATCGGTAACTTT+GGG | - | chr5.4:400638-400657 | MS.gene046942:intron | 45.0% | |
| ACTCGTTGCCGATGATATTG+AGG | - | chr5.4:401126-401145 | MS.gene046942:intron | 45.0% | |
| ACTTCAGCACAGGCTATGAT+GGG | - | chr5.4:401572-401591 | MS.gene046942:intron | 45.0% | |
| AGAAAATGCATGTCCGTTCC+GGG | + | chr5.4:402797-402816 | None:intergenic | 45.0% | |
| AGAATCTGCAGCTACTTGAC+TGG | + | chr5.4:403412-403431 | None:intergenic | 45.0% | |
| AGCACCAGGTTTGGATTTGA+AGG | + | chr5.4:400752-400771 | None:intergenic | 45.0% | |
| AGCAGATGAGACATCCTCTT+CGG | + | chr5.4:401176-401195 | None:intergenic | 45.0% | |
| AGCTATGACTGCAGTTGTAG+TGG | - | chr5.4:403614-403633 | MS.gene046942:intron | 45.0% | |
| ATCGTGTCGAGTATGAGTTG+TGG | - | chr5.4:401332-401351 | MS.gene046942:intron | 45.0% | |
| ATTTGTTTCCACGTCTGCAC+AGG | + | chr5.4:402283-402302 | None:intergenic | 45.0% | |
| CAAGGGCTCCTCAATATCAT+CGG | + | chr5.4:401137-401156 | None:intergenic | 45.0% | |
| CACAATGCTTGTTCAACCCA+TGG | + | chr5.4:403442-403461 | None:intergenic | 45.0% | |
| CACTCAGGCAAAATCCACTT+GGG | - | chr5.4:403801-403820 | MS.gene046942:intron | 45.0% | |
| CAGAAAATGCATGTCCGTTC+CGG | + | chr5.4:402798-402817 | None:intergenic | 45.0% | |
| CAGTGTCCTACAGGGTTTAA+AGG | - | chr5.4:402965-402984 | MS.gene046942:CDS | 45.0% | |
| CCAGCTGTTTGTTTGAGCAA+TGG | - | chr5.4:402183-402202 | MS.gene046942:CDS | 45.0% | |
| CCATCACCTTTAAACCCTGT+AGG | + | chr5.4:402974-402993 | None:intergenic | 45.0% | |
| CCATTGCTCAAACAAACAGC+TGG | + | chr5.4:402186-402205 | None:intergenic | 45.0% | |
| CCTACAGGGTTTAAAGGTGA+TGG | - | chr5.4:402971-402990 | MS.gene046942:CDS | 45.0% | |
| CGTTGCAAGATCAACAATGG+AGG | - | chr5.4:402757-402776 | MS.gene046942:CDS | 45.0% | |
| CTCCAGTGAAACAAACAGAG+AGG | + | chr5.4:403316-403335 | None:intergenic | 45.0% | |
| CTCCTCTCTGTTTGTTTCAC+TGG | - | chr5.4:403311-403330 | MS.gene046942:CDS | 45.0% | |
| CTTTAAACCCTGTAGGACAC+TGG | + | chr5.4:402967-402986 | None:intergenic | 45.0% | |
| GCACAGATCTTAGAGAAAGG+AGG | - | chr5.4:401427-401446 | MS.gene046942:intron | 45.0% | |
| GCAGATTCTTCGTAGTCCAT+GGG | - | chr5.4:403423-403442 | MS.gene046942:CDS | 45.0% | |
| GCAGCACAGATCTTAGAGAA+AGG | - | chr5.4:401424-401443 | MS.gene046942:intron | 45.0% | |
| GGGTGTGTCCATAGTAATCA+AGG | + | chr5.4:401155-401174 | None:intergenic | 45.0% | |
| GTTAAATGCCAGTGTCCTAC+AGG | - | chr5.4:402956-402975 | MS.gene046942:CDS | 45.0% | |
| TACAGGTAAAACTGCCACTC+AGG | - | chr5.4:403786-403805 | MS.gene046942:intron | 45.0% | |
| TCATACTCGACACGATCATC+AGG | + | chr5.4:401328-401347 | None:intergenic | 45.0% | |
| TCTGCTGCATTCTCTCAGTT+TGG | - | chr5.4:403907-403926 | MS.gene046942:CDS | 45.0% | |
| TGAAGGATGCCATTAGTGCT+GGG | - | chr5.4:401257-401276 | MS.gene046942:intron | 45.0% | |
| TGACAAACAACGGTGGTTGT+TGG | - | chr5.4:402310-402329 | MS.gene046942:CDS | 45.0% | |
| TGAGGAGCCCTTGATTACTA+TGG | - | chr5.4:401144-401163 | MS.gene046942:intron | 45.0% | |
| TGCAGATTCTTCGTAGTCCA+TGG | - | chr5.4:403422-403441 | MS.gene046942:CDS | 45.0% | |
| TTCAGAAAGCTACAGAGCAG+GGG | + | chr5.4:403052-403071 | None:intergenic | 45.0% | |
| TTGAAGGATGCCATTAGTGC+TGG | - | chr5.4:401256-401275 | MS.gene046942:intron | 45.0% | |
| ! | AGGCTATGATGGGAAAGATG+TGG | - | chr5.4:401582-401601 | MS.gene046942:intron | 45.0% |
| ! | CGTGATTTGGAACTTCTGCT+TGG | + | chr5.4:404117-404136 | None:intergenic | 45.0% |
| ! | GAAGGTTTGGAATGCTCAGA+AGG | - | chr5.4:401087-401106 | MS.gene046942:CDS | 45.0% |
| ! | GAGGCAGCTATGTGTTTTCA+AGG | - | chr5.4:401618-401637 | MS.gene046942:intron | 45.0% |
| ! | TTTGGGATTCCTCAATACGG+TGG | - | chr5.4:400655-400674 | MS.gene046942:intron | 45.0% |
| !! | ATTGGCTTGGGTATGATTGC+TGG | - | chr5.4:403844-403863 | MS.gene046942:intron | 45.0% |
| !! | GCAGCTATGTGTTTTCAAGG+TGG | - | chr5.4:401621-401640 | MS.gene046942:intron | 45.0% |
| !! | GGTGGTTTTGCAGCAATACA+TGG | - | chr5.4:404045-404064 | MS.gene046942:CDS | 45.0% |
| !!! | AATCCACTTGGGCTGCTTTT+TGG | - | chr5.4:403812-403831 | MS.gene046942:intron | 45.0% |
| !!! | ATCCACTTGGGCTGCTTTTT+GGG | - | chr5.4:403813-403832 | MS.gene046942:intron | 45.0% |
| !!! | GGAGAAAGGTGCCGTTTTAA+AGG | - | chr5.4:402128-402147 | MS.gene046942:intron | 45.0% |
| !! | AAATGAAATAATAAATTTAT+TGG | - | chr5.4:404024-404043 | MS.gene046942:CDS | 5.0% |
| AAACAACGGTGGTTGTTGGC+AGG | - | chr5.4:402314-402333 | MS.gene046942:CDS | 50.0% | |
| AAACCGAAAAGCCTTGGGTG+TGG | - | chr5.4:401650-401669 | MS.gene046942:intron | 50.0% | |
| AACCCAAAAAGCAGCCCAAG+TGG | + | chr5.4:403818-403837 | None:intergenic | 50.0% | |
| AACTTCTGCTTGGCTGTCCA+GGG | + | chr5.4:404107-404126 | None:intergenic | 50.0% | |
| ACACAACTACGAGTGCACGT+GGG | + | chr5.4:402697-402716 | None:intergenic | 50.0% | |
| ACCATCCTTCTCCTTGATCG+TGG | - | chr5.4:400778-400797 | MS.gene046942:CDS | 50.0% | |
| ATCTGCCAGGATACATTCCG+TGG | - | chr5.4:402446-402465 | MS.gene046942:intron | 50.0% | |
| CACAGATGTCCCTCAGCTAA+AGG | + | chr5.4:402663-402682 | None:intergenic | 50.0% | |
| CATGGCACAATATATGCCCC+TGG | - | chr5.4:404087-404106 | MS.gene046942:CDS | 50.0% | |
| CCACTCAGGCAAAATCCACT+TGG | - | chr5.4:403800-403819 | MS.gene046942:intron | 50.0% | |
| CGATCAAGGAGAAGGATGGT+AGG | + | chr5.4:400778-400797 | None:intergenic | 50.0% | |
| CTTGGGTATGATTGCTGGAG+GGG | - | chr5.4:403849-403868 | MS.gene046942:intron | 50.0% | |
| GAAGGATGCCATTAGTGCTG+GGG | - | chr5.4:401258-401277 | MS.gene046942:intron | 50.0% | |
| GACAGTGCGATCGGTAACTT+TGG | - | chr5.4:400637-400656 | MS.gene046942:intron | 50.0% | |
| GACCATATCCCCAGCACTAA+TGG | + | chr5.4:401269-401288 | None:intergenic | 50.0% | |
| GACTTCAGCACAGGCTATGA+TGG | - | chr5.4:401571-401590 | MS.gene046942:intron | 50.0% | |
| GAGTGCTTGACAAACAACGG+TGG | - | chr5.4:402303-402322 | MS.gene046942:intron | 50.0% | |
| GCAGATGAGACATCCTCTTC+GGG | + | chr5.4:401175-401194 | None:intergenic | 50.0% | |
| GCTTGGGTATGATTGCTGGA+GGG | - | chr5.4:403848-403867 | MS.gene046942:intron | 50.0% | |
| GGGAAACATGACAGTGCGAT+CGG | - | chr5.4:400628-400647 | MS.gene046942:intron | 50.0% | |
| GGTGGAGAAGAACAGCTTGT+CGG | - | chr5.4:400582-400601 | MS.gene046942:CDS | 50.0% | |
| TACTATGGACACACCCGAAG+AGG | - | chr5.4:401159-401178 | MS.gene046942:intron | 50.0% | |
| TAGATTGGGAAGGGATCACG+CGG | - | chr5.4:402048-402067 | MS.gene046942:intron | 50.0% | |
| TCAGAAAGCTACAGAGCAGG+GGG | + | chr5.4:403051-403070 | None:intergenic | 50.0% | |
| TCCACGATCAAGGAGAAGGA+TGG | + | chr5.4:400782-400801 | None:intergenic | 50.0% | |
| TCCTCAATACGGTGGTAGCA+TGG | - | chr5.4:400663-400682 | MS.gene046942:intron | 50.0% | |
| TCGACACGATCATCAGGATG+AGG | + | chr5.4:401322-401341 | None:intergenic | 50.0% | |
| TCTGATTTCCTGTGCAGACG+TGG | - | chr5.4:402272-402291 | MS.gene046942:intron | 50.0% | |
| TCTGCCAGGATACATTCCGT+GGG | - | chr5.4:402447-402466 | MS.gene046942:intron | 50.0% | |
| TCTTCTGTGTTTGCAGTCGG+TGG | - | chr5.4:402727-402746 | MS.gene046942:CDS | 50.0% | |
| TGTGAATGCCCCTTGGTTGA+TGG | - | chr5.4:402476-402495 | MS.gene046942:CDS | 50.0% | |
| TTGGGTATGATTGCTGGAGG+GGG | - | chr5.4:403850-403869 | MS.gene046942:intron | 50.0% | |
| TTGTTGATCTTGCAACGCCC+AGG | + | chr5.4:402754-402773 | None:intergenic | 50.0% | |
| ! | GGGCGTTGCAAGATCAACAA+TGG | - | chr5.4:402754-402773 | MS.gene046942:CDS | 50.0% |
| ! | GTTTGGAATGCTCAGAAGGC+TGG | - | chr5.4:401091-401110 | MS.gene046942:CDS | 50.0% |
| ! | TGCCATTAGTGCTGGGGATA+TGG | - | chr5.4:401264-401283 | MS.gene046942:intron | 50.0% |
| !! | CCAAGTGGATTTTGCCTGAG+TGG | + | chr5.4:403803-403822 | None:intergenic | 50.0% |
| ACATAGTCCCACCACACCCA+AGG | + | chr5.4:401664-401683 | None:intergenic | 55.0% | |
| ACTTCTGCTTGGCTGTCCAG+GGG | + | chr5.4:404106-404125 | None:intergenic | 55.0% | |
| AGAAAGCTACAGAGCAGGGG+GGG | + | chr5.4:403049-403068 | None:intergenic | 55.0% | |
| CAATACGGTGGTAGCATGGC+TGG | - | chr5.4:400667-400686 | MS.gene046942:intron | 55.0% | |
| CACAACTACGAGTGCACGTG+GGG | + | chr5.4:402696-402715 | None:intergenic | 55.0% | |
| CACACAACTACGAGTGCACG+TGG | + | chr5.4:402698-402717 | None:intergenic | 55.0% | |
| CAGAAAGCTACAGAGCAGGG+GGG | + | chr5.4:403050-403069 | None:intergenic | 55.0% | |
| CCATGGGAGATATTGCGCTC+CGG | - | chr5.4:401537-401556 | MS.gene046942:intron | 55.0% | |
| CGAAAAGCCTTGGGTGTGGT+GGG | - | chr5.4:401654-401673 | MS.gene046942:intron | 55.0% | |
| CTGAAGTCCTGCTCAGGATC+CGG | + | chr5.4:401559-401578 | None:intergenic | 55.0% | |
| GAACTTCTGCTTGGCTGTCC+AGG | + | chr5.4:404108-404127 | None:intergenic | 55.0% | |
| GAGGATGTTGGCATGATGCC+CGG | - | chr5.4:402776-402795 | MS.gene046942:CDS | 55.0% | |
| GATGTCAACGGCGAGATTCG+TGG | - | chr5.4:400561-400580 | MS.gene046942:CDS | 55.0% | |
| GCCATGCTACCACCGTATTG+AGG | + | chr5.4:400667-400686 | None:intergenic | 55.0% | |
| GCGAGTATGTGAATGCCCCT+TGG | - | chr5.4:402469-402488 | MS.gene046942:CDS | 55.0% | |
| GGCATTCACATACTCGCCCA+CGG | + | chr5.4:402466-402485 | None:intergenic | 55.0% | |
| GGCTTGGGTATGATTGCTGG+AGG | - | chr5.4:403847-403866 | MS.gene046942:intron | 55.0% | |
| TCAGAAGGCTGGAGCTTCTG+CGG | - | chr5.4:401102-401121 | MS.gene046942:CDS | 55.0% | |
| TGTTGGCATGATGCCCGGAA+CGG | - | chr5.4:402781-402800 | MS.gene046942:CDS | 55.0% | |
| TGTTTGCAGTCGGTGGACCT+GGG | - | chr5.4:402734-402753 | MS.gene046942:CDS | 55.0% | |
| ! | CCACCACACCCAAGGCTTTT+CGG | + | chr5.4:401656-401675 | None:intergenic | 55.0% |
| !! | AGGATGGTAGGAAGAGCACC+AGG | + | chr5.4:400766-400785 | None:intergenic | 55.0% |
| !! | GGTAGGAAGAGCACCAGGTT+TGG | + | chr5.4:400761-400780 | None:intergenic | 55.0% |
| CCGAAAAGCCTTGGGTGTGG+TGG | - | chr5.4:401653-401672 | MS.gene046942:intron | 60.0% | |
| CCGGAGCGCAATATCTCCCA+TGG | + | chr5.4:401540-401559 | None:intergenic | 60.0% | |
| CCTGAGCAGGACTTCAGCAC+AGG | - | chr5.4:401562-401581 | MS.gene046942:intron | 60.0% | |
| CCTGTGCTGAAGTCCTGCTC+AGG | + | chr5.4:401565-401584 | None:intergenic | 60.0% | |
| CTCGCCCACGGAATGTATCC+TGG | + | chr5.4:402454-402473 | None:intergenic | 60.0% | |
| GTCAACGGCGAGATTCGTGG+TGG | - | chr5.4:400564-400583 | MS.gene046942:CDS | 60.0% | |
| GTGTTTGCAGTCGGTGGACC+TGG | - | chr5.4:402733-402752 | MS.gene046942:CDS | 60.0% | |
| TTGCGCTCCGGATCCTGAGC+AGG | - | chr5.4:401549-401568 | MS.gene046942:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 400517 | 404156 | 400517 | ID=MS.gene046942 |
| chr5.4 | mRNA | 400517 | 404156 | 400517 | ID=MS.gene046942.t1;Parent=MS.gene046942 |
| chr5.4 | exon | 403871 | 404156 | 403871 | ID=MS.gene046942.t1.exon1;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 403871 | 404156 | 403871 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 402910 | 403602 | 402910 | ID=MS.gene046942.t1.exon2;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 402910 | 403602 | 402910 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 402720 | 402808 | 402720 | ID=MS.gene046942.t1.exon3;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 402720 | 402808 | 402720 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 402469 | 402622 | 402469 | ID=MS.gene046942.t1.exon4;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 402469 | 402622 | 402469 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 402308 | 402384 | 402308 | ID=MS.gene046942.t1.exon5;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 402308 | 402384 | 402308 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 402137 | 402218 | 402137 | ID=MS.gene046942.t1.exon6;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 402137 | 402218 | 402137 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 401848 | 401930 | 401848 | ID=MS.gene046942.t1.exon7;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 401848 | 401930 | 401848 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 401663 | 401729 | 401663 | ID=MS.gene046942.t1.exon8;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 401663 | 401729 | 401663 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 400999 | 401127 | 400999 | ID=MS.gene046942.t1.exon9;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 400999 | 401127 | 400999 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 400773 | 400882 | 400773 | ID=MS.gene046942.t1.exon10;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 400773 | 400882 | 400773 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| chr5.4 | exon | 400517 | 400615 | 400517 | ID=MS.gene046942.t1.exon11;Parent=MS.gene046942.t1 |
| chr5.4 | CDS | 400517 | 400615 | 400517 | ID=cds.MS.gene046942.t1;Parent=MS.gene046942.t1 |
| Gene Sequence |
| Protein sequence |
