Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40526.t1 | RHN53237.1 | 98.4 | 626 | 6 | 1 | 1 | 622 | 1 | 626 | 0.00E+00 | 1300 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40526.t1 | P93484 | 93.7 | 621 | 33 | 2 | 5 | 621 | 4 | 622 | 0.0e+00 | 1235.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40526.t1 | A0A396HQY9 | 98.4 | 626 | 6 | 1 | 1 | 622 | 1 | 626 | 0.0e+00 | 1300.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene40526 | 0.819401 | 1.18E-52 | -1.69E-46 |
| MS.gene050689 | MS.gene40526 | 0.801896 | 7.25E-49 | -1.69E-46 |
| MS.gene052036 | MS.gene40526 | 0.805756 | 1.14E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene40526 | 0.811652 | 6.29E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene40526 | 0.809575 | 1.77E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene40526 | 0.812137 | 4.93E-51 | -1.69E-46 |
| MS.gene054709 | MS.gene40526 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene056507 | MS.gene40526 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene40526 | 0.825524 | 4.47E-54 | -1.69E-46 |
| MS.gene059634 | MS.gene40526 | 0.803687 | 3.09E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40526 | MS.gene71616 | PPI |
| MS.gene024961 | MS.gene40526 | PPI |
| MS.gene44056 | MS.gene40526 | PPI |
| MS.gene005189 | MS.gene40526 | PPI |
| MS.gene40526 | MS.gene52620 | PPI |
| MS.gene91307 | MS.gene40526 | PPI |
| MS.gene96690 | MS.gene40526 | PPI |
| MS.gene92358 | MS.gene40526 | PPI |
| MS.gene046942 | MS.gene40526 | PPI |
| MS.gene40526 | MS.gene91547 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40526.t1 | MTR_5g005100 | 97.125 | 626 | 10 | 2 | 1 | 622 | 1 | 622 | 0.0 | 1256 |
| MS.gene40526.t1 | MTR_1g106940 | 88.177 | 609 | 69 | 2 | 17 | 622 | 24 | 632 | 0.0 | 1133 |
| MS.gene40526.t1 | MTR_1g106940 | 89.676 | 494 | 50 | 1 | 17 | 509 | 24 | 517 | 0.0 | 936 |
| MS.gene40526.t1 | MTR_8g005800 | 66.077 | 622 | 205 | 4 | 1 | 619 | 5 | 623 | 0.0 | 890 |
| MS.gene40526.t1 | MTR_7g073350 | 66.337 | 606 | 195 | 4 | 19 | 619 | 22 | 623 | 0.0 | 868 |
| MS.gene40526.t1 | MTR_2g437910 | 63.487 | 608 | 217 | 3 | 7 | 613 | 8 | 611 | 0.0 | 808 |
| MS.gene40526.t1 | MTR_3g101430 | 76.190 | 42 | 10 | 0 | 19 | 60 | 2 | 43 | 7.39e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40526.t1 | AT2G14740 | 84.463 | 605 | 93 | 1 | 19 | 622 | 24 | 628 | 0.0 | 1097 |
| MS.gene40526.t1 | AT2G14740 | 84.463 | 605 | 93 | 1 | 19 | 622 | 24 | 628 | 0.0 | 1097 |
| MS.gene40526.t1 | AT2G14720 | 83.553 | 608 | 99 | 1 | 16 | 622 | 21 | 628 | 0.0 | 1090 |
| MS.gene40526.t1 | AT2G14720 | 83.553 | 608 | 99 | 1 | 16 | 622 | 21 | 628 | 0.0 | 1090 |
| MS.gene40526.t1 | AT3G52850 | 71.082 | 619 | 174 | 4 | 4 | 620 | 5 | 620 | 0.0 | 928 |
| MS.gene40526.t1 | AT2G30290 | 66.502 | 609 | 200 | 3 | 4 | 609 | 6 | 613 | 0.0 | 895 |
| MS.gene40526.t1 | AT2G30290 | 66.502 | 609 | 200 | 3 | 4 | 609 | 6 | 613 | 0.0 | 895 |
| MS.gene40526.t1 | AT4G20110 | 61.935 | 620 | 222 | 6 | 6 | 617 | 7 | 620 | 0.0 | 823 |
| MS.gene40526.t1 | AT1G30900 | 62.625 | 602 | 219 | 4 | 9 | 610 | 15 | 610 | 0.0 | 813 |
| MS.gene40526.t1 | AT4G20110 | 61.058 | 624 | 224 | 8 | 6 | 617 | 7 | 623 | 0.0 | 806 |
| MS.gene40526.t1 | AT2G34940 | 58.843 | 605 | 242 | 4 | 7 | 611 | 14 | 611 | 0.0 | 766 |
Find 154 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTACAAATATAGAATT+AGG | 0.152074 | 5.2:-413904 | MS.gene40526:CDS |
| ACAATACCCTCTGCTCTTAT+TGG | 0.161645 | 5.2:-416569 | MS.gene40526:CDS |
| CTTTGATGATTGACGTGATT+TGG | 0.258850 | 5.2:+413655 | None:intergenic |
| ATCTTGCTCTTCTTTCAAAA+TGG | 0.266286 | 5.2:+415857 | None:intergenic |
| TCAGTACTGTTTATGTTAGT+TGG | 0.267130 | 5.2:-417245 | MS.gene40526:CDS |
| GTTTCTTTGCTTTGAAGGTT+TGG | 0.273783 | 5.2:-416709 | MS.gene40526:CDS |
| CAACCCTTATTGTTATCTTT+AGG | 0.286744 | 5.2:+417080 | None:intergenic |
| TGCCATTAGTGCTGGGGATA+TGG | 0.300176 | 5.2:-416519 | MS.gene40526:CDS |
| GAACTTCTGCTTGGCTGTCC+AGG | 0.305137 | 5.2:+413677 | None:intergenic |
| CAGTGTCCTACAGGGTTTAA+AGG | 0.310747 | 5.2:-414817 | MS.gene40526:CDS |
| CAGAAAATGCATGTCCGTTC+CGG | 0.315826 | 5.2:+414987 | None:intergenic |
| TGAGGAGCCCTTGATTACTA+TGG | 0.317046 | 5.2:-416639 | MS.gene40526:CDS |
| GACAGTACCATGTTATATAA+TGG | 0.319024 | 5.2:+416315 | None:intergenic |
| ATTGGCTTGGGTATGATTGC+TGG | 0.324545 | 5.2:-413938 | MS.gene40526:CDS |
| AGATTGTTTCTTTGCTTTGA+AGG | 0.325371 | 5.2:-416714 | MS.gene40526:CDS |
| GTGTTTGCAGTCGGTGGACC+TGG | 0.328777 | 5.2:-415049 | MS.gene40526:intron |
| CAGACAATATCGTGGTAAAC+TGG | 0.346061 | 5.2:-415675 | MS.gene40526:CDS |
| TTATCCTAAAGATAACAATA+AGG | 0.350659 | 5.2:-417084 | MS.gene40526:CDS |
| GACAACAAGAGTAGGTAATA+TGG | 0.353003 | 5.2:+415703 | None:intergenic |
| ACAGTACCATGTTATATAAT+GGG | 0.356620 | 5.2:+416316 | None:intergenic |
| GGCTATTTGTTCTGGATTTG+AGG | 0.358996 | 5.2:-415633 | MS.gene40526:CDS |
| GACCATATCCCCAGCACTAA+TGG | 0.375726 | 5.2:+416517 | None:intergenic |
| TCTCCCATGGTTTATGCATT+GGG | 0.390836 | 5.2:+416259 | None:intergenic |
| ATCTCCCATGGTTTATGCAT+TGG | 0.396833 | 5.2:+416258 | None:intergenic |
| AACTTCTGCTTGGCTGTCCA+GGG | 0.402153 | 5.2:+413678 | None:intergenic |
| GACAGTGCGATCGGTAACTT+TGG | 0.403999 | 5.2:-417146 | MS.gene40526:CDS |
| TATCCTAAAGATAACAATAA+GGG | 0.408259 | 5.2:-417083 | MS.gene40526:CDS |
| AGAAAATGCATGTCCGTTCC+GGG | 0.412062 | 5.2:+414988 | None:intergenic |
| TCCACACTCATCGTTACTAT+TGG | 0.418802 | 5.2:+416427 | None:intergenic |
| TGTATACAACTCACTTATAC+AGG | 0.418882 | 5.2:+414116 | None:intergenic |
| AGCAGATGAGACATCCTCTT+CGG | 0.422782 | 5.2:+416610 | None:intergenic |
| AGCACCAGGTTTGGATTTGA+AGG | 0.425579 | 5.2:+417034 | None:intergenic |
| CAGTACTGTTTATGTTAGTT+GGG | 0.425701 | 5.2:-417244 | MS.gene40526:CDS |
| TACAGGTAAAACTGCCAGTC+AGG | 0.431110 | 5.2:-413996 | MS.gene40526:intron |
| GACTTCAGCACAGGCTATGA+TGG | 0.431165 | 5.2:-416212 | MS.gene40526:CDS |
| GTTAAATGCCAGTGTCCTAC+AGG | 0.432639 | 5.2:-414826 | MS.gene40526:CDS |
| CTGAAGTCCTGCTCAGGATC+CGG | 0.438824 | 5.2:+416227 | None:intergenic |
| GGTAGGAAGAGCACCAGGTT+TGG | 0.440524 | 5.2:+417025 | None:intergenic |
| TTGGGTATGATTGCTGGAGG+GGG | 0.442632 | 5.2:-413932 | MS.gene40526:CDS |
| CTTGGGTATGATTGCTGGAG+GGG | 0.451243 | 5.2:-413933 | MS.gene40526:CDS |
| GCAGATGAGACATCCTCTTC+GGG | 0.459853 | 5.2:+416611 | None:intergenic |
| TTGAAGGATGCCATTAGTGC+TGG | 0.462509 | 5.2:-416527 | MS.gene40526:CDS |
| CGTGATTTGGAACTTCTGCT+TGG | 0.463555 | 5.2:+413668 | None:intergenic |
| GTTTGGAATGCTCAGAAGGC+TGG | 0.467555 | 5.2:-416692 | MS.gene40526:CDS |
| TGTGAATGCCCCTTGGTTGA+TGG | 0.468992 | 5.2:-415306 | MS.gene40526:CDS |
| CCAGTCAGGCAAAATCCACT+TGG | 0.469198 | 5.2:-413982 | MS.gene40526:CDS |
| CAAAAGAAACCGAAAAGCCT+TGG | 0.473973 | 5.2:-416139 | MS.gene40526:CDS |
| TCATACTCGACACGATCATC+AGG | 0.477928 | 5.2:+416458 | None:intergenic |
| TCAAATTAGATGCCCGATGA+AGG | 0.478586 | 5.2:-416090 | MS.gene40526:CDS |
| CAATACGGTGGTAGCATGGC+TGG | 0.479746 | 5.2:-417116 | MS.gene40526:CDS |
| ACAGTGCGATCGGTAACTTT+GGG | 0.480816 | 5.2:-417145 | MS.gene40526:CDS |
| GTTGATGGTGTTCAATTCAA+AGG | 0.482669 | 5.2:-415291 | MS.gene40526:CDS |
| CCATTGCTCAAACAAACAGC+TGG | 0.487515 | 5.2:+415599 | None:intergenic |
| GGGTGTGTCCATAGTAATCA+AGG | 0.488151 | 5.2:+416631 | None:intergenic |
| TGGTCAATGTTAATCTTGAC+TGG | 0.491505 | 5.2:-416499 | MS.gene40526:CDS |
| GAAGGTTTGGAATGCTCAGA+AGG | 0.501562 | 5.2:-416696 | MS.gene40526:CDS |
| TTCTGAAATCAGAGCAATCA+TGG | 0.503663 | 5.2:-413713 | MS.gene40526:CDS |
| AAAAGAAACCGAAAAGCCTT+GGG | 0.504812 | 5.2:-416138 | MS.gene40526:CDS |
| GTAACTAACTTCCACGATCA+AGG | 0.505995 | 5.2:+416994 | None:intergenic |
| TGTGTACAAATATAGAATTA+GGG | 0.507429 | 5.2:-413903 | MS.gene40526:intron |
| GCTTGGGTATGATTGCTGGA+GGG | 0.509710 | 5.2:-413934 | MS.gene40526:CDS |
| AATGCCGTCATTAAATCTCT+TGG | 0.510279 | 5.2:-416041 | MS.gene40526:intron |
| GGCTTGGGTATGATTGCTGG+AGG | 0.513936 | 5.2:-413935 | MS.gene40526:CDS |
| TTGCGCTCCGGATCCTGAGC+AGG | 0.517442 | 5.2:-416234 | MS.gene40526:CDS |
| ACTTCACCTGATAAAATCAA+AGG | 0.519263 | 5.2:-417176 | MS.gene40526:CDS |
| AAACAACGGTGGTTGTTGGC+AGG | 0.520508 | 5.2:-415468 | MS.gene40526:CDS |
| TTGTTGATCTTGCAACGCCC+AGG | 0.522495 | 5.2:+415031 | None:intergenic |
| ATGTGGTTGTTGAAAATTTG+AGG | 0.522629 | 5.2:-416184 | MS.gene40526:CDS |
| AGAACAAATAGCCTTTAAAA+CGG | 0.523531 | 5.2:+415643 | None:intergenic |
| TCTTCCTTCAAATCCAAACC+TGG | 0.527152 | 5.2:-417038 | MS.gene40526:CDS |
| AACTTTGGGATTCCTCAATA+CGG | 0.529300 | 5.2:-417131 | MS.gene40526:CDS |
| CCGAAAAGCCTTGGGTGTGG+TGG | 0.530784 | 5.2:-416130 | MS.gene40526:CDS |
| TGAAGGATGCCATTAGTGCT+GGG | 0.532526 | 5.2:-416526 | MS.gene40526:CDS |
| GATGTCAACGGCGAGATTCG+TGG | 0.533817 | 5.2:-417222 | MS.gene40526:CDS |
| CCTGTGCTGAAGTCCTGCTC+AGG | 0.540657 | 5.2:+416221 | None:intergenic |
| TGGAGATCTTCTGTATATCA+AGG | 0.544120 | 5.2:-414148 | MS.gene40526:CDS |
| TCCTCAATACGGTGGTAGCA+TGG | 0.544648 | 5.2:-417120 | MS.gene40526:CDS |
| TGCAAAGATTGACAAGTGCA+TGG | 0.545637 | 5.2:-415907 | MS.gene40526:CDS |
| ACTCACTTATACAGGTATCA+TGG | 0.546171 | 5.2:+414124 | None:intergenic |
| CTTCACCTGATAAAATCAAA+GGG | 0.549712 | 5.2:-417175 | MS.gene40526:CDS |
| GAGGATGTTGGCATGATGCC+CGG | 0.553226 | 5.2:-415006 | MS.gene40526:CDS |
| GCCATGCTACCACCGTATTG+AGG | 0.554564 | 5.2:+417119 | None:intergenic |
| CTGTTATTGACAACAAGAGT+AGG | 0.558861 | 5.2:+415695 | None:intergenic |
| GGTGGAGAAGAACAGCTTGT+CGG | 0.558947 | 5.2:-417201 | MS.gene40526:CDS |
| TGACAAACAACGGTGGTTGT+TGG | 0.559077 | 5.2:-415472 | MS.gene40526:CDS |
| CCTGAGCAGGACTTCAGCAC+AGG | 0.560984 | 5.2:-416221 | MS.gene40526:CDS |
| ACTCGTTGCCGATGATATTG+AGG | 0.563097 | 5.2:-416657 | MS.gene40526:CDS |
| AGCTAATATCACTGCATGCA+AGG | 0.568003 | 5.2:-415438 | MS.gene40526:intron |
| CCTACAGGGTTTAAAGGTGA+TGG | 0.569016 | 5.2:-414811 | MS.gene40526:CDS |
| GCAGCACAGATCTTAGAGAA+AGG | 0.570785 | 5.2:-416359 | MS.gene40526:CDS |
| TGTTTGCAGTCGGTGGACCT+GGG | 0.574779 | 5.2:-415048 | MS.gene40526:intron |
| ACTTCAGCACAGGCTATGAT+GGG | 0.575024 | 5.2:-416211 | MS.gene40526:CDS |
| AGATCAACAATGGAGGATGT+TGG | 0.577792 | 5.2:-415018 | MS.gene40526:CDS |
| GGTGTTCAATTCAAAGGAGA+CGG | 0.578646 | 5.2:-415285 | MS.gene40526:CDS |
| CGAAAAGCCTTGGGTGTGGT+GGG | 0.579998 | 5.2:-416129 | MS.gene40526:CDS |
| AGCTATGACTGCAGTTGTAG+TGG | 0.582229 | 5.2:-414168 | MS.gene40526:CDS |
| TATCGTGGTAAACTGGAGAA+AGG | 0.582709 | 5.2:-415668 | MS.gene40526:CDS |
| CAAGGGCTCCTCAATATCAT+CGG | 0.583903 | 5.2:+416649 | None:intergenic |
| CCATGGGAGATATTGCGCTC+CGG | 0.584021 | 5.2:-416246 | MS.gene40526:CDS |
| TTGTTGTGTAAACAGGATGA+TGG | 0.587216 | 5.2:-414853 | MS.gene40526:intron |
| ACTTCTGCTTGGCTGTCCAG+GGG | 0.591243 | 5.2:+413679 | None:intergenic |
| CTTTAAACCCTGTAGGACAC+TGG | 0.592362 | 5.2:+414818 | None:intergenic |
| ACCATCCTTCTCCTTGATCG+TGG | 0.593790 | 5.2:-417005 | MS.gene40526:CDS |
| CCAGCTGTTTGTTTGAGCAA+TGG | 0.595530 | 5.2:-415599 | MS.gene40526:intron |
| GGGAAACATGACAGTGCGAT+CGG | 0.595812 | 5.2:-417155 | MS.gene40526:CDS |
| GCGAGTATGTGAATGCCCCT+TGG | 0.597573 | 5.2:-415313 | MS.gene40526:CDS |
| GAATTGAACACCATCAACCA+AGG | 0.597885 | 5.2:+415296 | None:intergenic |
| CATGGCACAATATATGCCCC+TGG | 0.598457 | 5.2:-413695 | MS.gene40526:CDS |
| TATGTTAGTTGGGATGTCAA+CGG | 0.599268 | 5.2:-417234 | MS.gene40526:CDS |
| CCGGAGCGCAATATCTCCCA+TGG | 0.600947 | 5.2:+416246 | None:intergenic |
| TAATTCTATATTTGTACACA+AGG | 0.601328 | 5.2:+413906 | None:intergenic |
| ATCTGCCAGGATACATTCCG+TGG | 0.601733 | 5.2:-415336 | MS.gene40526:intron |
| GCAAAGATTGACAAGTGCAT+GGG | 0.604142 | 5.2:-415906 | MS.gene40526:CDS |
| AAACCGAAAAGCCTTGGGTG+TGG | 0.605855 | 5.2:-416133 | MS.gene40526:CDS |
| AACTTCCACGATCAAGGAGA+AGG | 0.607585 | 5.2:+417000 | None:intergenic |
| GACGGTTATACAACTTGTGA+AGG | 0.609305 | 5.2:-415267 | MS.gene40526:intron |
| CGATCAAGGAGAAGGATGGT+AGG | 0.611973 | 5.2:+417008 | None:intergenic |
| TACTATGGACACACCCGAAG+AGG | 0.615995 | 5.2:-416624 | MS.gene40526:CDS |
| CATTGCTCAAACAAACAGCT+GGG | 0.621538 | 5.2:+415600 | None:intergenic |
| AGGATGGTAGGAAGAGCACC+AGG | 0.624048 | 5.2:+417020 | None:intergenic |
| CAGTCAGGCAAAATCCACTT+GGG | 0.624354 | 5.2:-413981 | MS.gene40526:CDS |
| AATTGAACACCATCAACCAA+GGG | 0.625423 | 5.2:+415297 | None:intergenic |
| AAGTCCCAATGCATAAACCA+TGG | 0.629265 | 5.2:-416263 | MS.gene40526:CDS |
| TCGACACGATCATCAGGATG+AGG | 0.631218 | 5.2:+416464 | None:intergenic |
| TCAGAAGGCTGGAGCTTCTG+CGG | 0.634092 | 5.2:-416681 | MS.gene40526:CDS |
| TGTTAATCTTGACTGGAGAG+AGG | 0.634616 | 5.2:-416492 | MS.gene40526:CDS |
| GGGCGTTGCAAGATCAACAA+TGG | 0.636889 | 5.2:-415028 | MS.gene40526:CDS |
| GGCATTCACATACTCGCCCA+CGG | 0.638497 | 5.2:+415319 | None:intergenic |
| GTCAATAACAGACAATATCG+TGG | 0.638925 | 5.2:-415683 | MS.gene40526:CDS |
| ACATAGTCCCACCACACCCA+AGG | 0.638979 | 5.2:+416122 | None:intergenic |
| AGTCCCAATGCATAAACCAT+GGG | 0.639703 | 5.2:-416262 | MS.gene40526:CDS |
| TGTTGGCATGATGCCCGGAA+CGG | 0.640813 | 5.2:-415001 | MS.gene40526:CDS |
| CAGTACCATGTTATATAATG+GGG | 0.643079 | 5.2:+416317 | None:intergenic |
| TTACACCCCATTATATAACA+TGG | 0.646628 | 5.2:-416322 | MS.gene40526:CDS |
| TCCACGATCAAGGAGAAGGA+TGG | 0.649403 | 5.2:+417004 | None:intergenic |
| TTAAATGCCAGTGTCCTACA+GGG | 0.651425 | 5.2:-414825 | MS.gene40526:CDS |
| GAAGGATGCCATTAGTGCTG+GGG | 0.652649 | 5.2:-416525 | MS.gene40526:CDS |
| AATGAGTGCTTGACAAACAA+CGG | 0.653519 | 5.2:-415482 | MS.gene40526:CDS |
| GCACAGATCTTAGAGAAAGG+AGG | 0.654803 | 5.2:-416356 | MS.gene40526:CDS |
| CCATCACCTTTAAACCCTGT+AGG | 0.658035 | 5.2:+414811 | None:intergenic |
| CGTTGCAAGATCAACAATGG+AGG | 0.658097 | 5.2:-415025 | MS.gene40526:CDS |
| GGTGTGTCCATAGTAATCAA+GGG | 0.660123 | 5.2:+416632 | None:intergenic |
| ACCAATAGTAACGATGAGTG+TGG | 0.674003 | 5.2:-416428 | MS.gene40526:CDS |
| TTACTCAATGTAAACGCGTG+AGG | 0.679088 | 5.2:+416293 | None:intergenic |
| TCTGCCAGGATACATTCCGT+GGG | 0.680496 | 5.2:-415335 | MS.gene40526:intron |
| TTGTGTAAACAGGATGATGG+AGG | 0.686610 | 5.2:-414850 | MS.gene40526:intron |
| TTTGGGATTCCTCAATACGG+TGG | 0.689306 | 5.2:-417128 | MS.gene40526:CDS |
| CTGACCAAGAGATTTAATGA+CGG | 0.696138 | 5.2:+416037 | None:intergenic |
| GTCAACGGCGAGATTCGTGG+TGG | 0.699652 | 5.2:-417219 | MS.gene40526:CDS |
| AGGCTATGATGGGAAAGATG+TGG | 0.711715 | 5.2:-416201 | MS.gene40526:CDS |
| ATCGTGTCGAGTATGAGTTG+TGG | 0.711953 | 5.2:-416451 | MS.gene40526:CDS |
| TAGATTGGGAAGGGATCACG+CGG | 0.718440 | 5.2:-415734 | MS.gene40526:CDS |
| ATTGAACACCATCAACCAAG+GGG | 0.734010 | 5.2:+415298 | None:intergenic |
| GAGTGCTTGACAAACAACGG+TGG | 0.815477 | 5.2:-415479 | MS.gene40526:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTAACTATTAAATTTAT+TGG | - | chr5.2:415959-415978 | MS.gene40526:intron | 10.0% |
| !!! | ATTTTAAATGAAATAAAGTT+TGG | + | chr5.2:415985-416004 | None:intergenic | 10.0% |
| !! | AAAATATTAAAAACAGAATG+AGG | + | chr5.2:416252-416271 | None:intergenic | 15.0% |
| !! | AATATTATTAATAGAATCGA+TGG | - | chr5.2:416333-416352 | MS.gene40526:CDS | 15.0% |
| !! | ACTAAAAAAAAAAAGAAAGA+AGG | + | chr5.2:413955-413974 | None:intergenic | 15.0% |
| !! | AGATAAACATAATAAGAATA+TGG | + | chr5.2:414973-414992 | None:intergenic | 15.0% |
| !! | TAAACTAAAAGCAATTATAA+AGG | + | chr5.2:415096-415115 | None:intergenic | 15.0% |
| !! | TGAAATAATAAATTTATTGG+TGG | - | chr5.2:417159-417178 | MS.gene40526:CDS | 15.0% |
| !!! | AATTCCAAATTTTTTTATAG+TGG | + | chr5.2:416624-416643 | None:intergenic | 15.0% |
| !!! | TAAAATGTTTGTAGTTTTAT+TGG | - | chr5.2:415999-416018 | MS.gene40526:intron | 15.0% |
| !!! | TTTTCCACTATAAAAAAATT+TGG | - | chr5.2:416617-416636 | MS.gene40526:CDS | 15.0% |
| !! | AGTAATTCAGTTTCTAATTT+GGG | + | chr5.2:416034-416053 | None:intergenic | 20.0% |
| !! | ATTTAACATTGTAAGAACAT+AGG | + | chr5.2:415558-415577 | None:intergenic | 20.0% |
| !! | TAATTCTATATTTGTACACA+AGG | + | chr5.2:417011-417030 | None:intergenic | 20.0% |
| !! | TAGTAATTCAGTTTCTAATT+TGG | + | chr5.2:416035-416054 | None:intergenic | 20.0% |
| !! | TATCCTAAAGATAACAATAA+GGG | - | chr5.2:413831-413850 | MS.gene40526:intron | 20.0% |
| !! | TATTTGTGAGATACTAAATT+GGG | + | chr5.2:414052-414071 | None:intergenic | 20.0% |
| !! | TGTGTACAAATATAGAATTA+GGG | - | chr5.2:417011-417030 | MS.gene40526:CDS | 20.0% |
| !! | TTATCCTAAAGATAACAATA+AGG | - | chr5.2:413830-413849 | MS.gene40526:intron | 20.0% |
| !! | TTATTTGTGAGATACTAAAT+TGG | + | chr5.2:414053-414072 | None:intergenic | 20.0% |
| !! | TTGTGTACAAATATAGAATT+AGG | - | chr5.2:417010-417029 | MS.gene40526:CDS | 20.0% |
| !!! | GATAAATTTCTAAAGCATTA+TGG | - | chr5.2:417083-417102 | MS.gene40526:CDS | 20.0% |
| !!! | TGCTTTAGAAATTTATCAAT+TGG | + | chr5.2:417080-417099 | None:intergenic | 20.0% |
| ! | AAAAATAGCATGGAGTAATT+TGG | + | chr5.2:414084-414103 | None:intergenic | 25.0% |
| ! | AAACAAGAACGTGTAAATTT+AGG | + | chr5.2:416843-416862 | None:intergenic | 25.0% |
| ! | AAACAGACTTTCTAATAACA+CGG | - | chr5.2:415514-415533 | MS.gene40526:intron | 25.0% |
| ! | AATTATAAAGGACGTTACTT+GGG | + | chr5.2:415084-415103 | None:intergenic | 25.0% |
| ! | ACAGTACCATGTTATATAAT+GGG | + | chr5.2:414601-414620 | None:intergenic | 25.0% |
| ! | ATTATAACATAGGGACTAAA+GGG | - | chr5.2:414128-414147 | MS.gene40526:intron | 25.0% |
| ! | TCTACAGTATAAAAATAGCA+TGG | + | chr5.2:414094-414113 | None:intergenic | 25.0% |
| ! | TTCTTATTATGTTTATCTGC+AGG | - | chr5.2:414975-414994 | MS.gene40526:intron | 25.0% |
| !! | ACGCAAAATTGATTTCTAAA+GGG | - | chr5.2:415699-415718 | MS.gene40526:CDS | 25.0% |
| !! | AGAACAAATAGCCTTTAAAA+CGG | + | chr5.2:415274-415293 | None:intergenic | 25.0% |
| !! | CAAAATGGAATTTTCAGAAT+CGG | + | chr5.2:415045-415064 | None:intergenic | 25.0% |
| !!! | CGTAGATTTTTTTATGAAAC+TGG | - | chr5.2:415152-415171 | MS.gene40526:intron | 25.0% |
| !!! | TATGTTGATTGAGTTTTTGA+AGG | - | chr5.2:414521-414540 | MS.gene40526:intron | 25.0% |
| ACACATATTGTTGTGTAAAC+AGG | - | chr5.2:416054-416073 | MS.gene40526:CDS | 30.0% | |
| ACTTCACCTGATAAAATCAA+AGG | - | chr5.2:413738-413757 | MS.gene40526:intron | 30.0% | |
| ATCTTGCTCTTCTTTCAAAA+TGG | + | chr5.2:415060-415079 | None:intergenic | 30.0% | |
| ATGTGGTTGTTGAAAATTTG+AGG | - | chr5.2:414730-414749 | MS.gene40526:intron | 30.0% | |
| ATTAAAGTAGCGAAGAATCA+AGG | + | chr5.2:414016-414035 | None:intergenic | 30.0% | |
| CAACCCTTATTGTTATCTTT+AGG | + | chr5.2:413837-413856 | None:intergenic | 30.0% | |
| CAATTATAAAGGACGTTACT+TGG | + | chr5.2:415085-415104 | None:intergenic | 30.0% | |
| CAGTACCATGTTATATAATG+GGG | + | chr5.2:414600-414619 | None:intergenic | 30.0% | |
| CAGTACTGTTTATGTTAGTT+GGG | - | chr5.2:413670-413689 | MS.gene40526:CDS | 30.0% | |
| CATTATAACATAGGGACTAA+AGG | - | chr5.2:414127-414146 | MS.gene40526:intron | 30.0% | |
| CTTCACCTGATAAAATCAAA+GGG | - | chr5.2:413739-413758 | MS.gene40526:intron | 30.0% | |
| GACAGTACCATGTTATATAA+TGG | + | chr5.2:414602-414621 | None:intergenic | 30.0% | |
| GATGGTGTAAAAAATTGTGA+AGG | - | chr5.2:416121-416140 | MS.gene40526:CDS | 30.0% | |
| GTAAAAAATTGTGAAGGTGA+GGG | - | chr5.2:416127-416146 | MS.gene40526:CDS | 30.0% | |
| TACAATGTTAAATATCTGCC+AGG | - | chr5.2:415565-415584 | MS.gene40526:intron | 30.0% | |
| TAGTCCCTATGTTATAATGA+GGG | + | chr5.2:414126-414145 | None:intergenic | 30.0% | |
| TAGTCCCTCATTATAACATA+GGG | - | chr5.2:414119-414138 | MS.gene40526:intron | 30.0% | |
| TCAGTACTGTTTATGTTAGT+TGG | - | chr5.2:413669-413688 | MS.gene40526:CDS | 30.0% | |
| TGTAAAAAATTGTGAAGGTG+AGG | - | chr5.2:416126-416145 | MS.gene40526:CDS | 30.0% | |
| TGTATACAACTCACTTATAC+AGG | + | chr5.2:416801-416820 | None:intergenic | 30.0% | |
| TTACACCCCATTATATAACA+TGG | - | chr5.2:414592-414611 | MS.gene40526:intron | 30.0% | |
| TTACCTGTAGATTATACAGT+AGG | + | chr5.2:416907-416926 | None:intergenic | 30.0% | |
| TTAGTCCCTATGTTATAATG+AGG | + | chr5.2:414127-414146 | None:intergenic | 30.0% | |
| TTAGTCCCTCATTATAACAT+AGG | - | chr5.2:414118-414137 | MS.gene40526:intron | 30.0% | |
| TTTACTTACCTTTGGTACAA+GGG | - | chr5.2:415344-415363 | MS.gene40526:intron | 30.0% | |
| ! | AATCAATTTTGCGTGCATAA+AGG | + | chr5.2:415693-415712 | None:intergenic | 30.0% |
| ! | AGAGAGGAGATAACATATTT+TGG | + | chr5.2:416432-416451 | None:intergenic | 30.0% |
| ! | AGATTGTTTCTTTGCTTTGA+AGG | - | chr5.2:414200-414219 | MS.gene40526:CDS | 30.0% |
| ! | CACGCAAAATTGATTTCTAA+AGG | - | chr5.2:415698-415717 | MS.gene40526:CDS | 30.0% |
| ! | GCTCTTATTGGAAAAACTTT+TGG | - | chr5.2:414357-414376 | MS.gene40526:intron | 30.0% |
| ! | TATAGTGGAAAACATTCACT+AGG | + | chr5.2:416609-416628 | None:intergenic | 30.0% |
| !! | ATATTTTGGACAAAAGAGAG+AGG | + | chr5.2:416418-416437 | None:intergenic | 30.0% |
| !! | CTCAGTTTGGTGATTTTATT+GGG | - | chr5.2:417052-417071 | MS.gene40526:CDS | 30.0% |
| !! | GAGTTTTTGAAGGATTTCAA+GGG | - | chr5.2:414531-414550 | MS.gene40526:intron | 30.0% |
| !! | TCTCAGTTTGGTGATTTTAT+TGG | - | chr5.2:417051-417070 | MS.gene40526:CDS | 30.0% |
| !! | TGAGTTTTTGAAGGATTTCA+AGG | - | chr5.2:414530-414549 | MS.gene40526:intron | 30.0% |
| !! | TGTTTCCCTTTGATTTTATC+AGG | + | chr5.2:413747-413766 | None:intergenic | 30.0% |
| !!! | ATGAAACTGGTTTTGTAGAT+TGG | - | chr5.2:415165-415184 | MS.gene40526:intron | 30.0% |
| !!! | GCTTTTTGGGTTATTTTGAT+TGG | - | chr5.2:416958-416977 | MS.gene40526:intron | 30.0% |
| !!! | GTTTTAAAGGCTATTTGTTC+TGG | - | chr5.2:415273-415292 | MS.gene40526:CDS | 30.0% |
| !!! | TGAAACTGGTTTTGTAGATT+GGG | - | chr5.2:415166-415185 | MS.gene40526:intron | 30.0% |
| !!! | TTGTACTTTTTCTCCTTCAT+CGG | + | chr5.2:414840-414859 | None:intergenic | 30.0% |
| AAAAGAAACCGAAAAGCCTT+GGG | - | chr5.2:414776-414795 | MS.gene40526:intron | 35.0% | |
| AATCTCAGCAAGTGAAACAT+TGG | - | chr5.2:416479-416498 | MS.gene40526:CDS | 35.0% | |
| AATGAGTGCTTGACAAACAA+CGG | - | chr5.2:415432-415451 | MS.gene40526:intron | 35.0% | |
| AATGCCGTCATTAAATCTCT+TGG | - | chr5.2:414873-414892 | MS.gene40526:intron | 35.0% | |
| AATGTAGCTGCAAAAACACT+TGG | - | chr5.2:416720-416739 | MS.gene40526:intron | 35.0% | |
| AATTGAACACCATCAACCAA+GGG | + | chr5.2:415620-415639 | None:intergenic | 35.0% | |
| ACAACAAAGTAAGCAAGTCA+TGG | + | chr5.2:417122-417141 | None:intergenic | 35.0% | |
| ACTCACTTATACAGGTATCA+TGG | + | chr5.2:416793-416812 | None:intergenic | 35.0% | |
| AGAAGTGAAGGCAATAAACA+TGG | + | chr5.2:415740-415759 | None:intergenic | 35.0% | |
| AGATACTAAATTGGGCATCT+AGG | + | chr5.2:414044-414063 | None:intergenic | 35.0% | |
| AGCAAAGAAACAATCTGCAA+AGG | + | chr5.2:414196-414215 | None:intergenic | 35.0% | |
| AGTACTTCATGCTTCAATCT+GGG | - | chr5.2:416379-416398 | MS.gene40526:CDS | 35.0% | |
| ATGTAGCTGCAAAAACACTT+GGG | - | chr5.2:416721-416740 | MS.gene40526:intron | 35.0% | |
| CAACAAAGTAAGCAAGTCAT+GGG | + | chr5.2:417121-417140 | None:intergenic | 35.0% | |
| CAGAATGAGGATTCTATTCA+TGG | + | chr5.2:416239-416258 | None:intergenic | 35.0% | |
| CTGACCAAGAGATTTAATGA+CGG | + | chr5.2:414880-414899 | None:intergenic | 35.0% | |
| CTGTTATTGACAACAAGAGT+AGG | + | chr5.2:415222-415241 | None:intergenic | 35.0% | |
| GACAACAAGAGTAGGTAATA+TGG | + | chr5.2:415214-415233 | None:intergenic | 35.0% | |
| GGTAAGTGTTTACTTACCTT+TGG | - | chr5.2:415336-415355 | MS.gene40526:intron | 35.0% | |
| GTCAATAACAGACAATATCG+TGG | - | chr5.2:415231-415250 | MS.gene40526:intron | 35.0% | |
| GTTTACTTACCTTTGGTACA+AGG | - | chr5.2:415343-415362 | MS.gene40526:intron | 35.0% | |
| TACAACTTGTGAAGGTGAAA+TGG | - | chr5.2:415655-415674 | MS.gene40526:CDS | 35.0% | |
| TAGTACTTCATGCTTCAATC+TGG | - | chr5.2:416378-416397 | MS.gene40526:CDS | 35.0% | |
| TATGTTAGTTGGGATGTCAA+CGG | - | chr5.2:413680-413699 | MS.gene40526:CDS | 35.0% | |
| TCTCCTACTGTATAATCTAC+AGG | - | chr5.2:416901-416920 | MS.gene40526:intron | 35.0% | |
| TGGAGATCTTCTGTATATCA+AGG | - | chr5.2:416766-416785 | MS.gene40526:intron | 35.0% | |
| TGGTCAATGTTAATCTTGAC+TGG | - | chr5.2:414415-414434 | MS.gene40526:intron | 35.0% | |
| TTGTTGTGTAAACAGGATGA+TGG | - | chr5.2:416061-416080 | MS.gene40526:CDS | 35.0% | |
| ! | AACTTTTGGTCAGAAGTTGA+AGG | - | chr5.2:414371-414390 | MS.gene40526:intron | 35.0% |
| ! | ACATGCATTTTCTGCTTGTT+TGG | - | chr5.2:415936-415955 | MS.gene40526:intron | 35.0% |
| ! | AGTTTTTCCAATAAGAGCAG+AGG | + | chr5.2:414355-414374 | None:intergenic | 35.0% |
| ! | CTTTGATGATTGACGTGATT+TGG | + | chr5.2:417262-417281 | None:intergenic | 35.0% |
| ! | GAAGGAGAAAAAGTACAACA+AGG | - | chr5.2:414842-414861 | MS.gene40526:intron | 35.0% |
| ! | GTTTTTCCAATAAGAGCAGA+GGG | + | chr5.2:414354-414373 | None:intergenic | 35.0% |
| ! | TTATGTTTTCTTGCAGTCGT+TGG | - | chr5.2:414917-414936 | MS.gene40526:intron | 35.0% |
| !! | AACTTTGGGATTCCTCAATA+CGG | - | chr5.2:413783-413802 | MS.gene40526:intron | 35.0% |
| !! | GAAACATTGGCTTCTATACT+TGG | - | chr5.2:416492-416511 | MS.gene40526:CDS | 35.0% |
| !! | GTTGATGGTGTTCAATTCAA+AGG | - | chr5.2:415623-415642 | MS.gene40526:CDS | 35.0% |
| !! | GTTTCTTTGCTTTGAAGGTT+TGG | - | chr5.2:414205-414224 | MS.gene40526:CDS | 35.0% |
| !! | TGTTTTTGCAGCTACATTCA+GGG | + | chr5.2:416718-416737 | None:intergenic | 35.0% |
| !! | TTCTGAAATCAGAGCAATCA+TGG | - | chr5.2:417201-417220 | MS.gene40526:CDS | 35.0% |
| !!! | TGGGTTATTTTGATTGGCTT+GGG | - | chr5.2:416964-416983 | MS.gene40526:intron | 35.0% |
| !!! | TGTACTTTTTCTCCTTCATC+GGG | + | chr5.2:414839-414858 | None:intergenic | 35.0% |
| !!! | TTGGGTTATTTTGATTGGCT+TGG | - | chr5.2:416963-416982 | MS.gene40526:intron | 35.0% |
| AAGTCCCAATGCATAAACCA+TGG | - | chr5.2:414651-414670 | MS.gene40526:intron | 40.0% | |
| AATCACGATCCTTTAGCTGA+GGG | - | chr5.2:415783-415802 | MS.gene40526:intron | 40.0% | |
| ACAACACAGCATAGAAGTGA+AGG | + | chr5.2:415752-415771 | None:intergenic | 40.0% | |
| ACAATACCCTCTGCTCTTAT+TGG | - | chr5.2:414345-414364 | MS.gene40526:intron | 40.0% | |
| ACCAATAGTAACGATGAGTG+TGG | - | chr5.2:414486-414505 | MS.gene40526:intron | 40.0% | |
| AGATCAACAATGGAGGATGT+TGG | - | chr5.2:415896-415915 | MS.gene40526:CDS | 40.0% | |
| AGCTAATATCACTGCATGCA+AGG | - | chr5.2:415476-415495 | MS.gene40526:CDS | 40.0% | |
| AGGGACTAAAGGGATCAAAA+TGG | - | chr5.2:414138-414157 | MS.gene40526:CDS | 40.0% | |
| AGTCCCAATGCATAAACCAT+GGG | - | chr5.2:414652-414671 | MS.gene40526:intron | 40.0% | |
| ATCTCCCATGGTTTATGCAT+TGG | + | chr5.2:414659-414678 | None:intergenic | 40.0% | |
| ATTCAGAAAGCTACAGAGCA+GGG | + | chr5.2:416185-416204 | None:intergenic | 40.0% | |
| ATTGAACACCATCAACCAAG+GGG | + | chr5.2:415619-415638 | None:intergenic | 40.0% | |
| CAAAAGAAACCGAAAAGCCT+TGG | - | chr5.2:414775-414794 | MS.gene40526:intron | 40.0% | |
| CACAGGAAATCAGAAGAATG+AGG | + | chr5.2:415398-415417 | None:intergenic | 40.0% | |
| CAGACAATATCGTGGTAAAC+TGG | - | chr5.2:415239-415258 | MS.gene40526:intron | 40.0% | |
| CATTGCTCAAACAAACAGCT+GGG | + | chr5.2:415317-415336 | None:intergenic | 40.0% | |
| GAATTGAACACCATCAACCA+AGG | + | chr5.2:415621-415640 | None:intergenic | 40.0% | |
| GACGGTTATACAACTTGTGA+AGG | - | chr5.2:415647-415666 | MS.gene40526:CDS | 40.0% | |
| GCAAAGATTGACAAGTGCAT+GGG | - | chr5.2:415008-415027 | MS.gene40526:CDS | 40.0% | |
| GCATATTTCCCTTGTACCAA+AGG | + | chr5.2:415355-415374 | None:intergenic | 40.0% | |
| GGGACTAAAGGGATCAAAAT+GGG | - | chr5.2:414139-414158 | MS.gene40526:CDS | 40.0% | |
| GGTGTGTCCATAGTAATCAA+GGG | + | chr5.2:414285-414304 | None:intergenic | 40.0% | |
| GGTGTTCAATTCAAAGGAGA+CGG | - | chr5.2:415629-415648 | MS.gene40526:CDS | 40.0% | |
| GTAACTAACTTCCACGATCA+AGG | + | chr5.2:413923-413942 | None:intergenic | 40.0% | |
| GTTTCTTCTGTGTTTGCAGT+CGG | - | chr5.2:415856-415875 | MS.gene40526:CDS | 40.0% | |
| TAATCACGATCCTTTAGCTG+AGG | - | chr5.2:415782-415801 | MS.gene40526:intron | 40.0% | |
| TATCGTGGTAAACTGGAGAA+AGG | - | chr5.2:415246-415265 | MS.gene40526:intron | 40.0% | |
| TATTCAGAAAGCTACAGAGC+AGG | + | chr5.2:416186-416205 | None:intergenic | 40.0% | |
| TCAAATTAGATGCCCGATGA+AGG | - | chr5.2:414824-414843 | MS.gene40526:CDS | 40.0% | |
| TCCACACTCATCGTTACTAT+TGG | + | chr5.2:414490-414509 | None:intergenic | 40.0% | |
| TCTATGCTGTGTTGTGCATA+GGG | - | chr5.2:415757-415776 | MS.gene40526:intron | 40.0% | |
| TCTCCCATGGTTTATGCATT+GGG | + | chr5.2:414658-414677 | None:intergenic | 40.0% | |
| TCTTCCTTCAAATCCAAACC+TGG | - | chr5.2:413876-413895 | MS.gene40526:intron | 40.0% | |
| TGCAAAGATTGACAAGTGCA+TGG | - | chr5.2:415007-415026 | MS.gene40526:CDS | 40.0% | |
| TGTAGCTGCAAAAACACTTG+GGG | - | chr5.2:416722-416741 | MS.gene40526:intron | 40.0% | |
| TGTTAATCTTGACTGGAGAG+AGG | - | chr5.2:414422-414441 | MS.gene40526:intron | 40.0% | |
| TTAAATGCCAGTGTCCTACA+GGG | - | chr5.2:416089-416108 | MS.gene40526:CDS | 40.0% | |
| TTACTCAATGTAAACGCGTG+AGG | + | chr5.2:414624-414643 | None:intergenic | 40.0% | |
| TTCTATGCTGTGTTGTGCAT+AGG | - | chr5.2:415756-415775 | MS.gene40526:intron | 40.0% | |
| ! | GAATTTTCAGAATCGGCATC+AGG | + | chr5.2:415038-415057 | None:intergenic | 40.0% |
| ! | GGCTATTTGTTCTGGATTTG+AGG | - | chr5.2:415281-415300 | MS.gene40526:CDS | 40.0% |
| ! | TTGTGTAAACAGGATGATGG+AGG | - | chr5.2:416064-416083 | MS.gene40526:CDS | 40.0% |
| !! | GTGTTTTTGCAGCTACATTC+AGG | + | chr5.2:416719-416738 | None:intergenic | 40.0% |
| !!! | ACTGGTTTTGTAGATTGGGA+AGG | - | chr5.2:415170-415189 | MS.gene40526:intron | 40.0% |
| !!! | CTGGTTTTGTAGATTGGGAA+GGG | - | chr5.2:415171-415190 | MS.gene40526:intron | 40.0% |
| AACTTCCACGATCAAGGAGA+AGG | + | chr5.2:413917-413936 | None:intergenic | 45.0% | |
| ACAGTGCGATCGGTAACTTT+GGG | - | chr5.2:413769-413788 | MS.gene40526:intron | 45.0% | |
| ACTCGTTGCCGATGATATTG+AGG | - | chr5.2:414257-414276 | MS.gene40526:intron | 45.0% | |
| ACTTCAGCACAGGCTATGAT+GGG | - | chr5.2:414703-414722 | MS.gene40526:intron | 45.0% | |
| AGAAAATGCATGTCCGTTCC+GGG | + | chr5.2:415929-415948 | None:intergenic | 45.0% | |
| AGAATCTGCAGCTACTTGAC+TGG | + | chr5.2:416544-416563 | None:intergenic | 45.0% | |
| AGCACCAGGTTTGGATTTGA+AGG | + | chr5.2:413883-413902 | None:intergenic | 45.0% | |
| AGCAGATGAGACATCCTCTT+CGG | + | chr5.2:414307-414326 | None:intergenic | 45.0% | |
| AGCTATGACTGCAGTTGTAG+TGG | - | chr5.2:416746-416765 | MS.gene40526:intron | 45.0% | |
| ATCGTGTCGAGTATGAGTTG+TGG | - | chr5.2:414463-414482 | MS.gene40526:intron | 45.0% | |
| ATTTGTTTCCACGTCTGCAC+AGG | + | chr5.2:415415-415434 | None:intergenic | 45.0% | |
| CAAGGGCTCCTCAATATCAT+CGG | + | chr5.2:414268-414287 | None:intergenic | 45.0% | |
| CACAATGCTTGTTCAACCCA+TGG | + | chr5.2:416574-416593 | None:intergenic | 45.0% | |
| CAGAAAATGCATGTCCGTTC+CGG | + | chr5.2:415930-415949 | None:intergenic | 45.0% | |
| CAGTCAGGCAAAATCCACTT+GGG | - | chr5.2:416933-416952 | MS.gene40526:intron | 45.0% | |
| CAGTGTCCTACAGGGTTTAA+AGG | - | chr5.2:416097-416116 | MS.gene40526:CDS | 45.0% | |
| CCAGCTGTTTGTTTGAGCAA+TGG | - | chr5.2:415315-415334 | MS.gene40526:CDS | 45.0% | |
| CCATCACCTTTAAACCCTGT+AGG | + | chr5.2:416106-416125 | None:intergenic | 45.0% | |
| CCATTGCTCAAACAAACAGC+TGG | + | chr5.2:415318-415337 | None:intergenic | 45.0% | |
| CCTACAGGGTTTAAAGGTGA+TGG | - | chr5.2:416103-416122 | MS.gene40526:CDS | 45.0% | |
| CGTTGCAAGATCAACAATGG+AGG | - | chr5.2:415889-415908 | MS.gene40526:CDS | 45.0% | |
| CTCCAGTGAAACAAACAGAG+AGG | + | chr5.2:416448-416467 | None:intergenic | 45.0% | |
| CTCCTCTCTGTTTGTTTCAC+TGG | - | chr5.2:416443-416462 | MS.gene40526:CDS | 45.0% | |
| CTTTAAACCCTGTAGGACAC+TGG | + | chr5.2:416099-416118 | None:intergenic | 45.0% | |
| GCACAGATCTTAGAGAAAGG+AGG | - | chr5.2:414558-414577 | MS.gene40526:intron | 45.0% | |
| GCAGATTCTTCGTAGTCCAT+GGG | - | chr5.2:416555-416574 | MS.gene40526:CDS | 45.0% | |
| GCAGCACAGATCTTAGAGAA+AGG | - | chr5.2:414555-414574 | MS.gene40526:intron | 45.0% | |
| GGGTGTGTCCATAGTAATCA+AGG | + | chr5.2:414286-414305 | None:intergenic | 45.0% | |
| GTTAAATGCCAGTGTCCTAC+AGG | - | chr5.2:416088-416107 | MS.gene40526:CDS | 45.0% | |
| TACAGGTAAAACTGCCAGTC+AGG | - | chr5.2:416918-416937 | MS.gene40526:intron | 45.0% | |
| TCATACTCGACACGATCATC+AGG | + | chr5.2:414459-414478 | None:intergenic | 45.0% | |
| TCTGCTGCATTCTCTCAGTT+TGG | - | chr5.2:417039-417058 | MS.gene40526:CDS | 45.0% | |
| TGAAGGATGCCATTAGTGCT+GGG | - | chr5.2:414388-414407 | MS.gene40526:intron | 45.0% | |
| TGACAAACAACGGTGGTTGT+TGG | - | chr5.2:415442-415461 | MS.gene40526:CDS | 45.0% | |
| TGAGGAGCCCTTGATTACTA+TGG | - | chr5.2:414275-414294 | MS.gene40526:intron | 45.0% | |
| TGCAGATTCTTCGTAGTCCA+TGG | - | chr5.2:416554-416573 | MS.gene40526:CDS | 45.0% | |
| TTCAGAAAGCTACAGAGCAG+GGG | + | chr5.2:416184-416203 | None:intergenic | 45.0% | |
| TTGAAGGATGCCATTAGTGC+TGG | - | chr5.2:414387-414406 | MS.gene40526:intron | 45.0% | |
| ! | AGGCTATGATGGGAAAGATG+TGG | - | chr5.2:414713-414732 | MS.gene40526:intron | 45.0% |
| ! | CGTGATTTGGAACTTCTGCT+TGG | + | chr5.2:417249-417268 | None:intergenic | 45.0% |
| ! | GAAGGTTTGGAATGCTCAGA+AGG | - | chr5.2:414218-414237 | MS.gene40526:CDS | 45.0% |
| ! | GAGGCAGCTATGTGTTTTCA+AGG | - | chr5.2:414749-414768 | MS.gene40526:intron | 45.0% |
| ! | TTTGGGATTCCTCAATACGG+TGG | - | chr5.2:413786-413805 | MS.gene40526:intron | 45.0% |
| !! | ATTGGCTTGGGTATGATTGC+TGG | - | chr5.2:416976-416995 | MS.gene40526:intron | 45.0% |
| !! | GCAGCTATGTGTTTTCAAGG+TGG | - | chr5.2:414752-414771 | MS.gene40526:intron | 45.0% |
| !! | GGTGGTTTTGCAGCAATACA+TGG | - | chr5.2:417177-417196 | MS.gene40526:CDS | 45.0% |
| !!! | AATCCACTTGGGCTGCTTTT+TGG | - | chr5.2:416944-416963 | MS.gene40526:intron | 45.0% |
| !!! | ATCCACTTGGGCTGCTTTTT+GGG | - | chr5.2:416945-416964 | MS.gene40526:intron | 45.0% |
| !!! | GGAGAAAGGTGCCGTTTTAA+AGG | - | chr5.2:415260-415279 | MS.gene40526:intron | 45.0% |
| !! | AAATGAAATAATAAATTTAT+TGG | - | chr5.2:417156-417175 | MS.gene40526:CDS | 5.0% |
| AAACAACGGTGGTTGTTGGC+AGG | - | chr5.2:415446-415465 | MS.gene40526:CDS | 50.0% | |
| AAACCGAAAAGCCTTGGGTG+TGG | - | chr5.2:414781-414800 | MS.gene40526:intron | 50.0% | |
| AACCCAAAAAGCAGCCCAAG+TGG | + | chr5.2:416950-416969 | None:intergenic | 50.0% | |
| AACTTCTGCTTGGCTGTCCA+GGG | + | chr5.2:417239-417258 | None:intergenic | 50.0% | |
| ACACAACTACGAGTGCACGT+GGG | + | chr5.2:415829-415848 | None:intergenic | 50.0% | |
| ACCATCCTTCTCCTTGATCG+TGG | - | chr5.2:413909-413928 | MS.gene40526:CDS | 50.0% | |
| ATCTGCCAGGATACATTCCG+TGG | - | chr5.2:415578-415597 | MS.gene40526:intron | 50.0% | |
| CACAGATGTCCCTCAGCTAA+AGG | + | chr5.2:415795-415814 | None:intergenic | 50.0% | |
| CATGGCACAATATATGCCCC+TGG | - | chr5.2:417219-417238 | MS.gene40526:CDS | 50.0% | |
| CCAGTCAGGCAAAATCCACT+TGG | - | chr5.2:416932-416951 | MS.gene40526:intron | 50.0% | |
| CGATCAAGGAGAAGGATGGT+AGG | + | chr5.2:413909-413928 | None:intergenic | 50.0% | |
| CTTGGGTATGATTGCTGGAG+GGG | - | chr5.2:416981-417000 | MS.gene40526:intron | 50.0% | |
| GAAGGATGCCATTAGTGCTG+GGG | - | chr5.2:414389-414408 | MS.gene40526:intron | 50.0% | |
| GACAGTGCGATCGGTAACTT+TGG | - | chr5.2:413768-413787 | MS.gene40526:intron | 50.0% | |
| GACCATATCCCCAGCACTAA+TGG | + | chr5.2:414400-414419 | None:intergenic | 50.0% | |
| GACTTCAGCACAGGCTATGA+TGG | - | chr5.2:414702-414721 | MS.gene40526:intron | 50.0% | |
| GAGTGCTTGACAAACAACGG+TGG | - | chr5.2:415435-415454 | MS.gene40526:intron | 50.0% | |
| GCAGATGAGACATCCTCTTC+GGG | + | chr5.2:414306-414325 | None:intergenic | 50.0% | |
| GCTTGGGTATGATTGCTGGA+GGG | - | chr5.2:416980-416999 | MS.gene40526:intron | 50.0% | |
| GGGAAACATGACAGTGCGAT+CGG | - | chr5.2:413759-413778 | MS.gene40526:intron | 50.0% | |
| GGTGGAGAAGAACAGCTTGT+CGG | - | chr5.2:413713-413732 | MS.gene40526:CDS | 50.0% | |
| TACTATGGACACACCCGAAG+AGG | - | chr5.2:414290-414309 | MS.gene40526:intron | 50.0% | |
| TAGATTGGGAAGGGATCACG+CGG | - | chr5.2:415180-415199 | MS.gene40526:intron | 50.0% | |
| TCAGAAAGCTACAGAGCAGG+GGG | + | chr5.2:416183-416202 | None:intergenic | 50.0% | |
| TCCACGATCAAGGAGAAGGA+TGG | + | chr5.2:413913-413932 | None:intergenic | 50.0% | |
| TCCTCAATACGGTGGTAGCA+TGG | - | chr5.2:413794-413813 | MS.gene40526:intron | 50.0% | |
| TCGACACGATCATCAGGATG+AGG | + | chr5.2:414453-414472 | None:intergenic | 50.0% | |
| TCTGATTTCCTGTGCAGACG+TGG | - | chr5.2:415404-415423 | MS.gene40526:intron | 50.0% | |
| TCTGCCAGGATACATTCCGT+GGG | - | chr5.2:415579-415598 | MS.gene40526:intron | 50.0% | |
| TCTTCTGTGTTTGCAGTCGG+TGG | - | chr5.2:415859-415878 | MS.gene40526:CDS | 50.0% | |
| TGTGAATGCCCCTTGGTTGA+TGG | - | chr5.2:415608-415627 | MS.gene40526:CDS | 50.0% | |
| TTGGGTATGATTGCTGGAGG+GGG | - | chr5.2:416982-417001 | MS.gene40526:intron | 50.0% | |
| TTGTTGATCTTGCAACGCCC+AGG | + | chr5.2:415886-415905 | None:intergenic | 50.0% | |
| ! | GGGCGTTGCAAGATCAACAA+TGG | - | chr5.2:415886-415905 | MS.gene40526:CDS | 50.0% |
| ! | GTTTGGAATGCTCAGAAGGC+TGG | - | chr5.2:414222-414241 | MS.gene40526:CDS | 50.0% |
| ! | TGCCATTAGTGCTGGGGATA+TGG | - | chr5.2:414395-414414 | MS.gene40526:intron | 50.0% |
| !! | CCAAGTGGATTTTGCCTGAC+TGG | + | chr5.2:416935-416954 | None:intergenic | 50.0% |
| ACATAGTCCCACCACACCCA+AGG | + | chr5.2:414795-414814 | None:intergenic | 55.0% | |
| ACTTCTGCTTGGCTGTCCAG+GGG | + | chr5.2:417238-417257 | None:intergenic | 55.0% | |
| AGAAAGCTACAGAGCAGGGG+GGG | + | chr5.2:416181-416200 | None:intergenic | 55.0% | |
| CAATACGGTGGTAGCATGGC+TGG | - | chr5.2:413798-413817 | MS.gene40526:intron | 55.0% | |
| CACAACTACGAGTGCACGTG+GGG | + | chr5.2:415828-415847 | None:intergenic | 55.0% | |
| CACACAACTACGAGTGCACG+TGG | + | chr5.2:415830-415849 | None:intergenic | 55.0% | |
| CAGAAAGCTACAGAGCAGGG+GGG | + | chr5.2:416182-416201 | None:intergenic | 55.0% | |
| CCATGGGAGATATTGCGCTC+CGG | - | chr5.2:414668-414687 | MS.gene40526:intron | 55.0% | |
| CGAAAAGCCTTGGGTGTGGT+GGG | - | chr5.2:414785-414804 | MS.gene40526:intron | 55.0% | |
| CTGAAGTCCTGCTCAGGATC+CGG | + | chr5.2:414690-414709 | None:intergenic | 55.0% | |
| GAACTTCTGCTTGGCTGTCC+AGG | + | chr5.2:417240-417259 | None:intergenic | 55.0% | |
| GAGGATGTTGGCATGATGCC+CGG | - | chr5.2:415908-415927 | MS.gene40526:CDS | 55.0% | |
| GATGTCAACGGCGAGATTCG+TGG | - | chr5.2:413692-413711 | MS.gene40526:CDS | 55.0% | |
| GCCATGCTACCACCGTATTG+AGG | + | chr5.2:413798-413817 | None:intergenic | 55.0% | |
| GCGAGTATGTGAATGCCCCT+TGG | - | chr5.2:415601-415620 | MS.gene40526:CDS | 55.0% | |
| GGCATTCACATACTCGCCCA+CGG | + | chr5.2:415598-415617 | None:intergenic | 55.0% | |
| GGCTTGGGTATGATTGCTGG+AGG | - | chr5.2:416979-416998 | MS.gene40526:intron | 55.0% | |
| TCAGAAGGCTGGAGCTTCTG+CGG | - | chr5.2:414233-414252 | MS.gene40526:CDS | 55.0% | |
| TGTTGGCATGATGCCCGGAA+CGG | - | chr5.2:415913-415932 | MS.gene40526:CDS | 55.0% | |
| TGTTTGCAGTCGGTGGACCT+GGG | - | chr5.2:415866-415885 | MS.gene40526:CDS | 55.0% | |
| ! | CCACCACACCCAAGGCTTTT+CGG | + | chr5.2:414787-414806 | None:intergenic | 55.0% |
| !! | AGGATGGTAGGAAGAGCACC+AGG | + | chr5.2:413897-413916 | None:intergenic | 55.0% |
| !! | GGTAGGAAGAGCACCAGGTT+TGG | + | chr5.2:413892-413911 | None:intergenic | 55.0% |
| CCGAAAAGCCTTGGGTGTGG+TGG | - | chr5.2:414784-414803 | MS.gene40526:intron | 60.0% | |
| CCGGAGCGCAATATCTCCCA+TGG | + | chr5.2:414671-414690 | None:intergenic | 60.0% | |
| CCTGAGCAGGACTTCAGCAC+AGG | - | chr5.2:414693-414712 | MS.gene40526:intron | 60.0% | |
| CCTGTGCTGAAGTCCTGCTC+AGG | + | chr5.2:414696-414715 | None:intergenic | 60.0% | |
| CTCGCCCACGGAATGTATCC+TGG | + | chr5.2:415586-415605 | None:intergenic | 60.0% | |
| GTCAACGGCGAGATTCGTGG+TGG | - | chr5.2:413695-413714 | MS.gene40526:CDS | 60.0% | |
| GTGTTTGCAGTCGGTGGACC+TGG | - | chr5.2:415865-415884 | MS.gene40526:CDS | 60.0% | |
| TTGCGCTCCGGATCCTGAGC+AGG | - | chr5.2:414680-414699 | MS.gene40526:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 413648 | 417288 | 413648 | ID=MS.gene40526 |
| chr5.2 | mRNA | 413648 | 417288 | 413648 | ID=MS.gene40526.t1;Parent=MS.gene40526 |
| chr5.2 | exon | 417003 | 417288 | 417003 | ID=MS.gene40526.t1.exon1;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 417003 | 417288 | 417003 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 416042 | 416734 | 416042 | ID=MS.gene40526.t1.exon2;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 416042 | 416734 | 416042 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 415851 | 415939 | 415851 | ID=MS.gene40526.t1.exon3;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 415851 | 415939 | 415851 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 415600 | 415753 | 415600 | ID=MS.gene40526.t1.exon4;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 415600 | 415753 | 415600 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 415439 | 415515 | 415439 | ID=MS.gene40526.t1.exon5;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 415439 | 415515 | 415439 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 415268 | 415349 | 415268 | ID=MS.gene40526.t1.exon6;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 415268 | 415349 | 415268 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 414979 | 415061 | 414979 | ID=MS.gene40526.t1.exon7;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 414979 | 415061 | 414979 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 414794 | 414860 | 414794 | ID=MS.gene40526.t1.exon8;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 414794 | 414860 | 414794 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 414130 | 414258 | 414130 | ID=MS.gene40526.t1.exon9;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 414130 | 414258 | 414130 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 413904 | 414013 | 413904 | ID=MS.gene40526.t1.exon10;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 413904 | 414013 | 413904 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| chr5.2 | exon | 413648 | 413746 | 413648 | ID=MS.gene40526.t1.exon11;Parent=MS.gene40526.t1 |
| chr5.2 | CDS | 413648 | 413746 | 413648 | ID=cds.MS.gene40526.t1;Parent=MS.gene40526.t1 |
| Gene Sequence |
| Protein sequence |
