Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92358.t1 | RHN53237.1 | 98.2 | 627 | 6 | 2 | 1 | 623 | 1 | 626 | 0.00E+00 | 1295 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92358.t1 | P93484 | 93.6 | 622 | 33 | 2 | 5 | 622 | 4 | 622 | 0.0e+00 | 1234.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92358.t1 | A0A396HQY9 | 98.2 | 627 | 6 | 2 | 1 | 623 | 1 | 626 | 0.0e+00 | 1295.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene92358 | 0.8241 | 9.69E-54 | -1.69E-46 |
| MS.gene050384 | MS.gene92358 | 0.80637 | 8.50E-50 | -1.69E-46 |
| MS.gene052036 | MS.gene92358 | 0.800299 | 1.54E-48 | -1.69E-46 |
| MS.gene052155 | MS.gene92358 | -0.803838 | 2.88E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene92358 | -0.802328 | 5.91E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene92358 | 0.812147 | 4.91E-51 | -1.69E-46 |
| MS.gene052514 | MS.gene92358 | 0.813511 | 2.47E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene92358 | 0.808172 | 3.53E-50 | -1.69E-46 |
| MS.gene054709 | MS.gene92358 | 0.804977 | 1.67E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene92358 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene92358 | 0.832259 | 1.05E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene005189 | MS.gene92358 | PPI |
| MS.gene92358 | MS.gene71616 | PPI |
| MS.gene96690 | MS.gene92358 | PPI |
| MS.gene92358 | MS.gene91307 | PPI |
| MS.gene046942 | MS.gene92358 | PPI |
| MS.gene92358 | MS.gene91547 | PPI |
| MS.gene92358 | MS.gene40526 | PPI |
| MS.gene024961 | MS.gene92358 | PPI |
| MS.gene92358 | MS.gene52620 | PPI |
| MS.gene44056 | MS.gene92358 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92358.t1 | MTR_5g005100 | 96.970 | 627 | 10 | 3 | 1 | 623 | 1 | 622 | 0.0 | 1251 |
| MS.gene92358.t1 | MTR_1g106940 | 88.177 | 609 | 70 | 1 | 17 | 623 | 24 | 632 | 0.0 | 1137 |
| MS.gene92358.t1 | MTR_1g106940 | 89.676 | 494 | 51 | 0 | 17 | 510 | 24 | 517 | 0.0 | 939 |
| MS.gene92358.t1 | MTR_8g005800 | 66.077 | 622 | 206 | 3 | 1 | 620 | 5 | 623 | 0.0 | 895 |
| MS.gene92358.t1 | MTR_7g073350 | 66.337 | 606 | 196 | 3 | 19 | 620 | 22 | 623 | 0.0 | 872 |
| MS.gene92358.t1 | MTR_2g437910 | 63.443 | 610 | 215 | 4 | 7 | 614 | 8 | 611 | 0.0 | 805 |
| MS.gene92358.t1 | MTR_3g101430 | 76.190 | 42 | 10 | 0 | 19 | 60 | 2 | 43 | 7.41e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92358.t1 | AT2G14740 | 84.463 | 605 | 94 | 0 | 19 | 623 | 24 | 628 | 0.0 | 1101 |
| MS.gene92358.t1 | AT2G14740 | 84.463 | 605 | 94 | 0 | 19 | 623 | 24 | 628 | 0.0 | 1101 |
| MS.gene92358.t1 | AT2G14720 | 83.553 | 608 | 100 | 0 | 16 | 623 | 21 | 628 | 0.0 | 1094 |
| MS.gene92358.t1 | AT2G14720 | 83.553 | 608 | 100 | 0 | 16 | 623 | 21 | 628 | 0.0 | 1094 |
| MS.gene92358.t1 | AT3G52850 | 71.082 | 619 | 175 | 3 | 4 | 621 | 5 | 620 | 0.0 | 932 |
| MS.gene92358.t1 | AT2G30290 | 66.502 | 609 | 201 | 2 | 4 | 610 | 6 | 613 | 0.0 | 899 |
| MS.gene92358.t1 | AT2G30290 | 66.502 | 609 | 201 | 2 | 4 | 610 | 6 | 613 | 0.0 | 899 |
| MS.gene92358.t1 | AT4G20110 | 61.836 | 621 | 222 | 6 | 6 | 618 | 7 | 620 | 0.0 | 822 |
| MS.gene92358.t1 | AT1G30900 | 62.521 | 603 | 219 | 4 | 9 | 611 | 15 | 610 | 0.0 | 813 |
| MS.gene92358.t1 | AT4G20110 | 60.960 | 625 | 224 | 8 | 6 | 618 | 7 | 623 | 0.0 | 806 |
| MS.gene92358.t1 | AT2G34940 | 58.746 | 606 | 242 | 5 | 7 | 612 | 14 | 611 | 0.0 | 765 |
Find 153 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTACAAATATAGAATT+AGG | 0.152074 | 5.1:-287886 | MS.gene92358:CDS |
| ACAATACCCTCTGCTCTTAT+TGG | 0.161645 | 5.1:-290548 | MS.gene92358:CDS |
| CTTTGATGATTGACGTGATT+TGG | 0.258850 | 5.1:+287637 | None:intergenic |
| ATCTTGCTCTTCTTTCAAAA+TGG | 0.266286 | 5.1:+289837 | None:intergenic |
| TCAGTACTGTTTATGTTAGT+TGG | 0.267130 | 5.1:-291225 | MS.gene92358:CDS |
| GTTTCTTTGCTTTGAAGGTT+TGG | 0.273783 | 5.1:-290688 | MS.gene92358:CDS |
| CAACCCTTATTGTTATCTTT+AGG | 0.286744 | 5.1:+291060 | None:intergenic |
| TGCCATTAGTGCTGGGGATA+TGG | 0.300176 | 5.1:-290498 | MS.gene92358:CDS |
| GAACTTCTGCTTGGCTGTCC+AGG | 0.305137 | 5.1:+287659 | None:intergenic |
| CAGTGTCCTACAGGGTTTAA+AGG | 0.310747 | 5.1:-288797 | MS.gene92358:CDS |
| CAGAAAATGCATGTCCGTTC+CGG | 0.315826 | 5.1:+288967 | None:intergenic |
| TGAGGAGCCCTTGATTACTA+TGG | 0.317046 | 5.1:-290618 | MS.gene92358:CDS |
| GACAGTACCATGTTATATAA+TGG | 0.319024 | 5.1:+290294 | None:intergenic |
| ATTGGCTTGGGTATGATTGC+TGG | 0.324545 | 5.1:-287920 | MS.gene92358:CDS |
| AGATTGTTTCTTTGCTTTGA+AGG | 0.325371 | 5.1:-290693 | MS.gene92358:CDS |
| GTGTTTGCAGTCGGTGGACC+TGG | 0.328777 | 5.1:-289029 | MS.gene92358:intron |
| CAGACAATATCGTGGTAAAC+TGG | 0.346061 | 5.1:-289655 | MS.gene92358:CDS |
| TTATCCTAAAGATAACAATA+AGG | 0.350659 | 5.1:-291064 | MS.gene92358:CDS |
| GACAACAAGAGTAGGTAATA+TGG | 0.353003 | 5.1:+289683 | None:intergenic |
| ACAGTACCATGTTATATAAT+GGG | 0.356620 | 5.1:+290295 | None:intergenic |
| GGCTATTTGTTCTGGATTTG+AGG | 0.358996 | 5.1:-289613 | MS.gene92358:CDS |
| GACCATATCCCCAGCACTAA+TGG | 0.375726 | 5.1:+290496 | None:intergenic |
| TCTCCCATGGTTTATGCATT+GGG | 0.390836 | 5.1:+290238 | None:intergenic |
| ATCTCCCATGGTTTATGCAT+TGG | 0.396833 | 5.1:+290237 | None:intergenic |
| AACTTCTGCTTGGCTGTCCA+GGG | 0.402153 | 5.1:+287660 | None:intergenic |
| GACAGTGCGATCGGTAACTT+TGG | 0.403999 | 5.1:-291126 | MS.gene92358:CDS |
| TATCCTAAAGATAACAATAA+GGG | 0.408259 | 5.1:-291063 | MS.gene92358:CDS |
| AGAAAATGCATGTCCGTTCC+GGG | 0.412062 | 5.1:+288968 | None:intergenic |
| TCCACACTCATCGTTACTAT+TGG | 0.418802 | 5.1:+290406 | None:intergenic |
| TGTATACAACTCACTTATAC+AGG | 0.418882 | 5.1:+288098 | None:intergenic |
| AGCAGATGAGACATCCTCTT+CGG | 0.422782 | 5.1:+290589 | None:intergenic |
| AGCACCAGGTTTGGATTTGA+AGG | 0.425579 | 5.1:+291011 | None:intergenic |
| CAGTACTGTTTATGTTAGTT+GGG | 0.425701 | 5.1:-291224 | MS.gene92358:CDS |
| TACAGGTAAAACTGCCAGTC+AGG | 0.431110 | 5.1:-287978 | MS.gene92358:intron |
| GACTTCAGCACAGGCTATGA+TGG | 0.431165 | 5.1:-290191 | MS.gene92358:CDS |
| GTTAAATGCCAGTGTCCTAC+AGG | 0.432639 | 5.1:-288806 | MS.gene92358:CDS |
| CTGAAGTCCTGCTCAGGATC+CGG | 0.438824 | 5.1:+290206 | None:intergenic |
| GGTAGGAAGAGCACCAGGTT+TGG | 0.440524 | 5.1:+291002 | None:intergenic |
| TTGGGTATGATTGCTGGAGG+GGG | 0.442632 | 5.1:-287914 | MS.gene92358:CDS |
| CTTGGGTATGATTGCTGGAG+GGG | 0.451243 | 5.1:-287915 | MS.gene92358:CDS |
| GCAGATGAGACATCCTCTTC+GGG | 0.459853 | 5.1:+290590 | None:intergenic |
| TTGAAGGATGCCATTAGTGC+TGG | 0.462509 | 5.1:-290506 | MS.gene92358:CDS |
| CGTGATTTGGAACTTCTGCT+TGG | 0.463555 | 5.1:+287650 | None:intergenic |
| GTTTGGAATGCTCAGAAGGC+TGG | 0.467555 | 5.1:-290671 | MS.gene92358:CDS |
| TGTGAATGCCCCTTGGTTGA+TGG | 0.468992 | 5.1:-289286 | MS.gene92358:CDS |
| CCAGTCAGGCAAAATCCACT+TGG | 0.469198 | 5.1:-287964 | MS.gene92358:CDS |
| CAAAAGAAACCGAAAAGCCT+TGG | 0.473973 | 5.1:-290118 | MS.gene92358:CDS |
| TCATACTCGACACGATCATC+AGG | 0.477928 | 5.1:+290437 | None:intergenic |
| TCAAATTAGATGCCCGATGA+AGG | 0.478586 | 5.1:-290069 | MS.gene92358:CDS |
| CAATACGGTGGTAGCATGGC+TGG | 0.479746 | 5.1:-291096 | MS.gene92358:CDS |
| ACAGTGCGATCGGTAACTTT+GGG | 0.480816 | 5.1:-291125 | MS.gene92358:CDS |
| GTTGATGGTGTTCAATTCAA+AGG | 0.482669 | 5.1:-289271 | MS.gene92358:CDS |
| CCATTGCTCAAACAAACAGC+TGG | 0.487515 | 5.1:+289579 | None:intergenic |
| GGGTGTGTCCATAGTAATCA+AGG | 0.488151 | 5.1:+290610 | None:intergenic |
| TGGTCAATGTTAATCTTGAC+TGG | 0.491505 | 5.1:-290478 | MS.gene92358:CDS |
| GAAGGTTTGGAATGCTCAGA+AGG | 0.501562 | 5.1:-290675 | MS.gene92358:CDS |
| TTCTGAAATCAGAGCAATCA+TGG | 0.503663 | 5.1:-287695 | MS.gene92358:CDS |
| AAAAGAAACCGAAAAGCCTT+GGG | 0.504812 | 5.1:-290117 | MS.gene92358:CDS |
| GTAACTAACTTCCACGATCA+AGG | 0.505995 | 5.1:+290971 | None:intergenic |
| TGTGTACAAATATAGAATTA+GGG | 0.507429 | 5.1:-287885 | MS.gene92358:intron |
| GCTTGGGTATGATTGCTGGA+GGG | 0.509710 | 5.1:-287916 | MS.gene92358:CDS |
| AATGCCGTCATTAAATCTCT+TGG | 0.510279 | 5.1:-290020 | MS.gene92358:intron |
| GGCTTGGGTATGATTGCTGG+AGG | 0.513936 | 5.1:-287917 | MS.gene92358:CDS |
| TTGCGCTCCGGATCCTGAGC+AGG | 0.517442 | 5.1:-290213 | MS.gene92358:CDS |
| AAACAACGGTGGTTGTTGGC+AGG | 0.520508 | 5.1:-289448 | MS.gene92358:CDS |
| TTGTTGATCTTGCAACGCCC+AGG | 0.522495 | 5.1:+289011 | None:intergenic |
| ATGTGGTTGTTGAAAATTTG+AGG | 0.522629 | 5.1:-290163 | MS.gene92358:CDS |
| AGAACAAATAGCCTTTAAAA+CGG | 0.523531 | 5.1:+289623 | None:intergenic |
| TCTTCCTTCAAATCCAAACC+TGG | 0.527152 | 5.1:-291015 | MS.gene92358:CDS |
| AACTTTGGGATTCCTCAATA+CGG | 0.529300 | 5.1:-291111 | MS.gene92358:CDS |
| CCGAAAAGCCTTGGGTGTGG+TGG | 0.530784 | 5.1:-290109 | MS.gene92358:CDS |
| TGAAGGATGCCATTAGTGCT+GGG | 0.532526 | 5.1:-290505 | MS.gene92358:CDS |
| GATGTCAACGGCGAGATTCG+TGG | 0.533817 | 5.1:-291202 | MS.gene92358:CDS |
| CCTGTGCTGAAGTCCTGCTC+AGG | 0.540657 | 5.1:+290200 | None:intergenic |
| TGGAGATCTTCTGTATATCA+AGG | 0.544120 | 5.1:-288130 | MS.gene92358:CDS |
| TCCTCAATACGGTGGTAGCA+TGG | 0.544648 | 5.1:-291100 | MS.gene92358:CDS |
| TGCAAAGATTGACAAGTGCA+TGG | 0.545637 | 5.1:-289887 | MS.gene92358:CDS |
| ACTCACTTATACAGGTATCA+TGG | 0.546171 | 5.1:+288106 | None:intergenic |
| GAGGATGTTGGCATGATGCC+CGG | 0.553226 | 5.1:-288986 | MS.gene92358:CDS |
| GCCATGCTACCACCGTATTG+AGG | 0.554564 | 5.1:+291099 | None:intergenic |
| CTGTTATTGACAACAAGAGT+AGG | 0.558861 | 5.1:+289675 | None:intergenic |
| GGTGGAGAAGAACAGCTTGT+CGG | 0.558947 | 5.1:-291181 | MS.gene92358:CDS |
| TGACAAACAACGGTGGTTGT+TGG | 0.559077 | 5.1:-289452 | MS.gene92358:CDS |
| CCTGAGCAGGACTTCAGCAC+AGG | 0.560984 | 5.1:-290200 | MS.gene92358:CDS |
| ACTCGTTGCCGATGATATTG+AGG | 0.563097 | 5.1:-290636 | MS.gene92358:CDS |
| AGCTAATATCACTGCATGCA+AGG | 0.568003 | 5.1:-289418 | MS.gene92358:intron |
| CCTACAGGGTTTAAAGGTGA+TGG | 0.569016 | 5.1:-288791 | MS.gene92358:CDS |
| ACTTCACCTGATAAAATCAA+AGG | 0.570340 | 5.1:-291156 | MS.gene92358:CDS |
| GCAGCACAGATCTTAGAGAA+AGG | 0.570785 | 5.1:-290338 | MS.gene92358:CDS |
| TGTTTGCAGTCGGTGGACCT+GGG | 0.574779 | 5.1:-289028 | MS.gene92358:intron |
| ACTTCAGCACAGGCTATGAT+GGG | 0.575024 | 5.1:-290190 | MS.gene92358:CDS |
| AGATCAACAATGGAGGATGT+TGG | 0.577792 | 5.1:-288998 | MS.gene92358:CDS |
| GGTGTTCAATTCAAAGGAGA+CGG | 0.578646 | 5.1:-289265 | MS.gene92358:CDS |
| CGAAAAGCCTTGGGTGTGGT+GGG | 0.579998 | 5.1:-290108 | MS.gene92358:CDS |
| AGCTATGACTGCAGTTGTAG+TGG | 0.582229 | 5.1:-288150 | MS.gene92358:CDS |
| TATCGTGGTAAACTGGAGAA+AGG | 0.582709 | 5.1:-289648 | MS.gene92358:CDS |
| CAAGGGCTCCTCAATATCAT+CGG | 0.583903 | 5.1:+290628 | None:intergenic |
| CCATGGGAGATATTGCGCTC+CGG | 0.584021 | 5.1:-290225 | MS.gene92358:CDS |
| TTGTTGTGTAAACAGGATGA+TGG | 0.587216 | 5.1:-288833 | MS.gene92358:intron |
| ACTTCTGCTTGGCTGTCCAG+GGG | 0.591243 | 5.1:+287661 | None:intergenic |
| CTTTAAACCCTGTAGGACAC+TGG | 0.592362 | 5.1:+288798 | None:intergenic |
| ACCATCCTTCTCCTTGATCG+TGG | 0.593790 | 5.1:-290982 | MS.gene92358:CDS |
| CCAGCTGTTTGTTTGAGCAA+TGG | 0.595530 | 5.1:-289579 | MS.gene92358:intron |
| GGAAAACATGACAGTGCGAT+CGG | 0.595812 | 5.1:-291135 | MS.gene92358:CDS |
| GCGAGTATGTGAATGCCCCT+TGG | 0.597573 | 5.1:-289293 | MS.gene92358:CDS |
| GAATTGAACACCATCAACCA+AGG | 0.597885 | 5.1:+289276 | None:intergenic |
| CATGGCACAATATATGCCCC+TGG | 0.598457 | 5.1:-287677 | MS.gene92358:CDS |
| TATGTTAGTTGGGATGTCAA+CGG | 0.599268 | 5.1:-291214 | MS.gene92358:CDS |
| CCGGAGCGCAATATCTCCCA+TGG | 0.600947 | 5.1:+290225 | None:intergenic |
| TAATTCTATATTTGTACACA+AGG | 0.601328 | 5.1:+287888 | None:intergenic |
| ATCTGCCAGGATACATTCCG+TGG | 0.601733 | 5.1:-289316 | MS.gene92358:intron |
| GCAAAGATTGACAAGTGCAT+GGG | 0.604142 | 5.1:-289886 | MS.gene92358:CDS |
| AAACCGAAAAGCCTTGGGTG+TGG | 0.605855 | 5.1:-290112 | MS.gene92358:CDS |
| AACTTCCACGATCAAGGAGA+AGG | 0.607585 | 5.1:+290977 | None:intergenic |
| GACGGTTATACAACTTGTGA+AGG | 0.609305 | 5.1:-289247 | MS.gene92358:intron |
| CGATCAAGGAGAAGGATGGT+AGG | 0.611973 | 5.1:+290985 | None:intergenic |
| TACTATGGACACACCCGAAG+AGG | 0.615995 | 5.1:-290603 | MS.gene92358:CDS |
| CATTGCTCAAACAAACAGCT+GGG | 0.621538 | 5.1:+289580 | None:intergenic |
| AGGATGGTAGGAAGAGCACC+AGG | 0.624048 | 5.1:+290997 | None:intergenic |
| CAGTCAGGCAAAATCCACTT+GGG | 0.624354 | 5.1:-287963 | MS.gene92358:CDS |
| AATTGAACACCATCAACCAA+GGG | 0.625423 | 5.1:+289277 | None:intergenic |
| AAGTCCCAATGCATAAACCA+TGG | 0.629265 | 5.1:-290242 | MS.gene92358:CDS |
| TCGACACGATCATCAGGATG+AGG | 0.631218 | 5.1:+290443 | None:intergenic |
| TCAGAAGGCTGGAGCTTCTG+CGG | 0.634092 | 5.1:-290660 | MS.gene92358:CDS |
| TGTTAATCTTGACTGGAGAG+AGG | 0.634616 | 5.1:-290471 | MS.gene92358:CDS |
| GGGCGTTGCAAGATCAACAA+TGG | 0.636889 | 5.1:-289008 | MS.gene92358:CDS |
| GGCATTCACATACTCGCCCA+CGG | 0.638497 | 5.1:+289299 | None:intergenic |
| GTCAATAACAGACAATATCG+TGG | 0.638925 | 5.1:-289663 | MS.gene92358:CDS |
| ACATAGTCCCACCACACCCA+AGG | 0.638979 | 5.1:+290101 | None:intergenic |
| AGTCCCAATGCATAAACCAT+GGG | 0.639703 | 5.1:-290241 | MS.gene92358:CDS |
| TGTTGGCATGATGCCCGGAA+CGG | 0.640813 | 5.1:-288981 | MS.gene92358:CDS |
| CAGTACCATGTTATATAATG+GGG | 0.643079 | 5.1:+290296 | None:intergenic |
| TTACACCCCATTATATAACA+TGG | 0.646628 | 5.1:-290301 | MS.gene92358:CDS |
| TCCACGATCAAGGAGAAGGA+TGG | 0.649403 | 5.1:+290981 | None:intergenic |
| TTAAATGCCAGTGTCCTACA+GGG | 0.651425 | 5.1:-288805 | MS.gene92358:CDS |
| GAAGGATGCCATTAGTGCTG+GGG | 0.652649 | 5.1:-290504 | MS.gene92358:CDS |
| AATGAGTGCTTGACAAACAA+CGG | 0.653519 | 5.1:-289462 | MS.gene92358:CDS |
| GCACAGATCTTAGAGAAAGG+AGG | 0.654803 | 5.1:-290335 | MS.gene92358:CDS |
| CCATCACCTTTAAACCCTGT+AGG | 0.658035 | 5.1:+288791 | None:intergenic |
| CGTTGCAAGATCAACAATGG+AGG | 0.658097 | 5.1:-289005 | MS.gene92358:CDS |
| GGTGTGTCCATAGTAATCAA+GGG | 0.660123 | 5.1:+290611 | None:intergenic |
| ACCAATAGTAACGATGAGTG+TGG | 0.674003 | 5.1:-290407 | MS.gene92358:CDS |
| TTACTCAATGTAAACGCGTG+AGG | 0.679088 | 5.1:+290272 | None:intergenic |
| TCTGCCAGGATACATTCCGT+GGG | 0.680496 | 5.1:-289315 | MS.gene92358:intron |
| TTGTGTAAACAGGATGATGG+AGG | 0.686610 | 5.1:-288830 | MS.gene92358:intron |
| TTTGGGATTCCTCAATACGG+TGG | 0.689306 | 5.1:-291108 | MS.gene92358:CDS |
| CTGACCAAGAGATTTAATGA+CGG | 0.696138 | 5.1:+290016 | None:intergenic |
| GTCAACGGCGAGATTCGTGG+TGG | 0.699652 | 5.1:-291199 | MS.gene92358:CDS |
| AGGCTATGATGGGAAAGATG+TGG | 0.711715 | 5.1:-290180 | MS.gene92358:CDS |
| ATCGTGTCGAGTATGAGTTG+TGG | 0.711953 | 5.1:-290430 | MS.gene92358:CDS |
| TAGATTGGGAAGGGATCACG+CGG | 0.718440 | 5.1:-289714 | MS.gene92358:CDS |
| ATTGAACACCATCAACCAAG+GGG | 0.734010 | 5.1:+289278 | None:intergenic |
| GAGTGCTTGACAAACAACGG+TGG | 0.815477 | 5.1:-289459 | MS.gene92358:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGAAATAATAAATTTGT+TGG | - | chr5.1:291136-291155 | MS.gene92358:CDS | 10.0% |
| !! | AATATTATTAATAGAATTGA+TGG | - | chr5.1:290315-290334 | MS.gene92358:CDS | 10.0% |
| !! | TTAGTAACTATTAAATTTAT+TGG | - | chr5.1:289941-289960 | MS.gene92358:intron | 10.0% |
| !!! | ATTTTAAATGAAATAAAGTT+TGG | + | chr5.1:289967-289986 | None:intergenic | 10.0% |
| !! | AAAATATTAAAAACAGAATG+AGG | + | chr5.1:290234-290253 | None:intergenic | 15.0% |
| !! | AACTAAAAAAAAAAGAAAGA+AGG | + | chr5.1:287940-287959 | None:intergenic | 15.0% |
| !! | AGATAAACATAATAAGAATA+TGG | + | chr5.1:288955-288974 | None:intergenic | 15.0% |
| !! | TAAACTAAAAGCAATTATAA+AGG | + | chr5.1:289078-289097 | None:intergenic | 15.0% |
| !!! | AATTCCAAATTTTTTTATAG+TGG | + | chr5.1:290604-290623 | None:intergenic | 15.0% |
| !!! | TAAAATGTTTGTAGTTTTAT+TGG | - | chr5.1:289981-290000 | MS.gene92358:intron | 15.0% |
| !!! | TTTTCCACTATAAAAAAATT+TGG | - | chr5.1:290597-290616 | MS.gene92358:CDS | 15.0% |
| !! | AGTAATTCAGTTTCTAATTT+GGG | + | chr5.1:290016-290035 | None:intergenic | 20.0% |
| !! | ATTTAACATTGTAAGAACAT+AGG | + | chr5.1:289540-289559 | None:intergenic | 20.0% |
| !! | TAATTCTATATTTGTACACA+AGG | + | chr5.1:290991-291010 | None:intergenic | 20.0% |
| !! | TAGTAATTCAGTTTCTAATT+TGG | + | chr5.1:290017-290036 | None:intergenic | 20.0% |
| !! | TATCCTAAAGATAACAATAA+GGG | - | chr5.1:287813-287832 | MS.gene92358:intron | 20.0% |
| !! | TATTTGTGAGATACTAAATT+GGG | + | chr5.1:288036-288055 | None:intergenic | 20.0% |
| !! | TGTGTACAAATATAGAATTA+GGG | - | chr5.1:290991-291010 | MS.gene92358:CDS | 20.0% |
| !! | TTATCCTAAAGATAACAATA+AGG | - | chr5.1:287812-287831 | MS.gene92358:intron | 20.0% |
| !! | TTATTTGTGAGATACTAAAT+TGG | + | chr5.1:288037-288056 | None:intergenic | 20.0% |
| !! | TTGTGTACAAATATAGAATT+AGG | - | chr5.1:290990-291009 | MS.gene92358:CDS | 20.0% |
| !!! | ACACAAAATTGATTTCTAAA+GGG | - | chr5.1:289681-289700 | MS.gene92358:CDS | 20.0% |
| !!! | TGAAATAATAAATTTGTTGG+TGG | - | chr5.1:291139-291158 | MS.gene92358:CDS | 20.0% |
| !!! | TGCTTTAGAAATTTATCAAT+TGG | + | chr5.1:291060-291079 | None:intergenic | 20.0% |
| ! | AAAAATAGCATGGAGTAATT+TGG | + | chr5.1:288066-288085 | None:intergenic | 25.0% |
| ! | AAACAAGAACGTGTAAATTT+AGG | + | chr5.1:290823-290842 | None:intergenic | 25.0% |
| ! | AAACAGACTTTCTAATAACA+CGG | - | chr5.1:289496-289515 | MS.gene92358:intron | 25.0% |
| ! | AATTATAAAGGACGTTACTT+GGG | + | chr5.1:289066-289085 | None:intergenic | 25.0% |
| ! | ACAGTACCATGTTATATAAT+GGG | + | chr5.1:288584-288603 | None:intergenic | 25.0% |
| ! | ATTATAACATAGGGACTAAA+GGG | - | chr5.1:288110-288129 | MS.gene92358:intron | 25.0% |
| ! | TCTACAGTATAAAAATAGCA+TGG | + | chr5.1:288076-288095 | None:intergenic | 25.0% |
| ! | TTCTTATTATGTTTATCTGC+AGG | - | chr5.1:288957-288976 | MS.gene92358:intron | 25.0% |
| !! | AATCAATTTTGTGTGCATAA+AGG | + | chr5.1:289675-289694 | None:intergenic | 25.0% |
| !! | AGAACAAATAGCCTTTAAAA+CGG | + | chr5.1:289256-289275 | None:intergenic | 25.0% |
| !! | CAAAATGGAATTTTCAGAAT+CGG | + | chr5.1:289027-289046 | None:intergenic | 25.0% |
| !! | CACACAAAATTGATTTCTAA+AGG | - | chr5.1:289680-289699 | MS.gene92358:CDS | 25.0% |
| !!! | CGTAGATTTTTTTATGAAAC+TGG | - | chr5.1:289134-289153 | MS.gene92358:intron | 25.0% |
| !!! | TATGTTGATTGAGTTTTTGA+AGG | - | chr5.1:288504-288523 | MS.gene92358:intron | 25.0% |
| !!! | TGTTTTCCTTTGATTTTATC+AGG | + | chr5.1:287729-287748 | None:intergenic | 25.0% |
| ACACATATTGTTGTGTAAAC+AGG | - | chr5.1:290036-290055 | MS.gene92358:CDS | 30.0% | |
| ACTTCACCTGATAAAATCAA+AGG | - | chr5.1:287720-287739 | MS.gene92358:intron | 30.0% | |
| ATCTTGCTCTTCTTTCAAAA+TGG | + | chr5.1:289042-289061 | None:intergenic | 30.0% | |
| ATGTGGTTGTTGAAAATTTG+AGG | - | chr5.1:288713-288732 | MS.gene92358:intron | 30.0% | |
| ATTAAAGTAGCGAAGAATCA+AGG | + | chr5.1:288000-288019 | None:intergenic | 30.0% | |
| CAACCCTTATTGTTATCTTT+AGG | + | chr5.1:287819-287838 | None:intergenic | 30.0% | |
| CAATTATAAAGGACGTTACT+TGG | + | chr5.1:289067-289086 | None:intergenic | 30.0% | |
| CAGTACCATGTTATATAATG+GGG | + | chr5.1:288583-288602 | None:intergenic | 30.0% | |
| CAGTACTGTTTATGTTAGTT+GGG | - | chr5.1:287652-287671 | MS.gene92358:CDS | 30.0% | |
| CATTATAACATAGGGACTAA+AGG | - | chr5.1:288109-288128 | MS.gene92358:intron | 30.0% | |
| GACAGTACCATGTTATATAA+TGG | + | chr5.1:288585-288604 | None:intergenic | 30.0% | |
| GATGGTGTAAAAAATTGTGA+AGG | - | chr5.1:290103-290122 | MS.gene92358:CDS | 30.0% | |
| GTAAAAAATTGTGAAGGTGA+GGG | - | chr5.1:290109-290128 | MS.gene92358:CDS | 30.0% | |
| TACAATGTTAAATATCTGCC+AGG | - | chr5.1:289547-289566 | MS.gene92358:intron | 30.0% | |
| TAGTCCCTATGTTATAATGA+GGG | + | chr5.1:288108-288127 | None:intergenic | 30.0% | |
| TAGTCCCTCATTATAACATA+GGG | - | chr5.1:288101-288120 | MS.gene92358:intron | 30.0% | |
| TCAGTACTGTTTATGTTAGT+TGG | - | chr5.1:287651-287670 | MS.gene92358:CDS | 30.0% | |
| TGTAAAAAATTGTGAAGGTG+AGG | - | chr5.1:290108-290127 | MS.gene92358:CDS | 30.0% | |
| TGTATACAACTCACTTATAC+AGG | + | chr5.1:290781-290800 | None:intergenic | 30.0% | |
| TTACACCCCATTATATAACA+TGG | - | chr5.1:288575-288594 | MS.gene92358:intron | 30.0% | |
| TTACCTGTAGATTATACAGT+AGG | + | chr5.1:290887-290906 | None:intergenic | 30.0% | |
| TTAGTCCCTATGTTATAATG+AGG | + | chr5.1:288109-288128 | None:intergenic | 30.0% | |
| TTAGTCCCTCATTATAACAT+AGG | - | chr5.1:288100-288119 | MS.gene92358:intron | 30.0% | |
| TTTACTTACCTTTGGTACAA+GGG | - | chr5.1:289326-289345 | MS.gene92358:intron | 30.0% | |
| ! | AGAGAGGAGATAACATATTT+TGG | + | chr5.1:290414-290433 | None:intergenic | 30.0% |
| ! | AGATTGTTTCTTTGCTTTGA+AGG | - | chr5.1:288183-288202 | MS.gene92358:CDS | 30.0% |
| ! | GCTCTTATTGGAAAAACTTT+TGG | - | chr5.1:288340-288359 | MS.gene92358:intron | 30.0% |
| ! | TTTATAGTGGAAAACTCACT+AGG | + | chr5.1:290591-290610 | None:intergenic | 30.0% |
| !! | ATATTTTGGACAAAAGAGAG+AGG | + | chr5.1:290400-290419 | None:intergenic | 30.0% |
| !! | CTCAGTTTGGTGATTTTATT+GGG | - | chr5.1:291032-291051 | MS.gene92358:CDS | 30.0% |
| !! | GAGTTTTTGAAGGATTTCAA+GGG | - | chr5.1:288514-288533 | MS.gene92358:intron | 30.0% |
| !! | TCTCAGTTTGGTGATTTTAT+TGG | - | chr5.1:291031-291050 | MS.gene92358:CDS | 30.0% |
| !! | TGAGTTTTTGAAGGATTTCA+AGG | - | chr5.1:288513-288532 | MS.gene92358:intron | 30.0% |
| !!! | ATGAAACTGGTTTTGTAGAT+TGG | - | chr5.1:289147-289166 | MS.gene92358:intron | 30.0% |
| !!! | GCTTTTTGGGTTATTTTGAT+TGG | - | chr5.1:290938-290957 | MS.gene92358:intron | 30.0% |
| !!! | GTTTTAAAGGCTATTTGTTC+TGG | - | chr5.1:289255-289274 | MS.gene92358:CDS | 30.0% |
| !!! | TGAAACTGGTTTTGTAGATT+GGG | - | chr5.1:289148-289167 | MS.gene92358:intron | 30.0% |
| !!! | TTGTACTTTTTCTCCTTCAT+CGG | + | chr5.1:288823-288842 | None:intergenic | 30.0% |
| AAAAGAAACCGAAAAGCCTT+GGG | - | chr5.1:288759-288778 | MS.gene92358:intron | 35.0% | |
| AATCTCAGCAAGTGAAACAT+TGG | - | chr5.1:290461-290480 | MS.gene92358:CDS | 35.0% | |
| AATGAGTGCTTGACAAACAA+CGG | - | chr5.1:289414-289433 | MS.gene92358:intron | 35.0% | |
| AATGCCGTCATTAAATCTCT+TGG | - | chr5.1:288856-288875 | MS.gene92358:intron | 35.0% | |
| AATGTAGCTGCAAAAACACT+TGG | - | chr5.1:290700-290719 | MS.gene92358:intron | 35.0% | |
| AATTGAACACCATCAACCAA+GGG | + | chr5.1:289602-289621 | None:intergenic | 35.0% | |
| ACAACAAAGTAAGCAAGTCA+TGG | + | chr5.1:291102-291121 | None:intergenic | 35.0% | |
| ACTCACTTATACAGGTATCA+TGG | + | chr5.1:290773-290792 | None:intergenic | 35.0% | |
| AGAAGTGAAGGCAATAAACA+TGG | + | chr5.1:289722-289741 | None:intergenic | 35.0% | |
| AGATACTAAATTGGGCATCT+AGG | + | chr5.1:288028-288047 | None:intergenic | 35.0% | |
| AGCAAAGAAACAATCTGCAA+AGG | + | chr5.1:288179-288198 | None:intergenic | 35.0% | |
| AGTACTTCATGCTTCAATCT+GGG | - | chr5.1:290361-290380 | MS.gene92358:CDS | 35.0% | |
| ATGTAGCTGCAAAAACACTT+GGG | - | chr5.1:290701-290720 | MS.gene92358:intron | 35.0% | |
| CAACAAAGTAAGCAAGTCAT+GGG | + | chr5.1:291101-291120 | None:intergenic | 35.0% | |
| CAGAATGAGGATTCTATTCA+TGG | + | chr5.1:290221-290240 | None:intergenic | 35.0% | |
| CTGACCAAGAGATTTAATGA+CGG | + | chr5.1:288863-288882 | None:intergenic | 35.0% | |
| CTGTTATTGACAACAAGAGT+AGG | + | chr5.1:289204-289223 | None:intergenic | 35.0% | |
| GACAACAAGAGTAGGTAATA+TGG | + | chr5.1:289196-289215 | None:intergenic | 35.0% | |
| GGTAAGTGTTTACTTACCTT+TGG | - | chr5.1:289318-289337 | MS.gene92358:intron | 35.0% | |
| GTCAATAACAGACAATATCG+TGG | - | chr5.1:289213-289232 | MS.gene92358:intron | 35.0% | |
| GTTTACTTACCTTTGGTACA+AGG | - | chr5.1:289325-289344 | MS.gene92358:intron | 35.0% | |
| TACAACTTGTGAAGGTGAAA+TGG | - | chr5.1:289637-289656 | MS.gene92358:CDS | 35.0% | |
| TAGTACTTCATGCTTCAATC+TGG | - | chr5.1:290360-290379 | MS.gene92358:CDS | 35.0% | |
| TATGTTAGTTGGGATGTCAA+CGG | - | chr5.1:287662-287681 | MS.gene92358:CDS | 35.0% | |
| TCTCCTACTGTATAATCTAC+AGG | - | chr5.1:290881-290900 | MS.gene92358:intron | 35.0% | |
| TGGAGATCTTCTGTATATCA+AGG | - | chr5.1:290746-290765 | MS.gene92358:intron | 35.0% | |
| TGGTCAATGTTAATCTTGAC+TGG | - | chr5.1:288398-288417 | MS.gene92358:intron | 35.0% | |
| TTGTTGTGTAAACAGGATGA+TGG | - | chr5.1:290043-290062 | MS.gene92358:CDS | 35.0% | |
| ! | AACTTTTGGTCAGAAGTTGA+AGG | - | chr5.1:288354-288373 | MS.gene92358:intron | 35.0% |
| ! | ACATGCATTTTCTGCTTGTT+TGG | - | chr5.1:289918-289937 | MS.gene92358:intron | 35.0% |
| ! | AGTTTTTCCAATAAGAGCAG+AGG | + | chr5.1:288338-288357 | None:intergenic | 35.0% |
| ! | CTTTGATGATTGACGTGATT+TGG | + | chr5.1:291242-291261 | None:intergenic | 35.0% |
| ! | GAAGGAGAAAAAGTACAACA+AGG | - | chr5.1:288825-288844 | MS.gene92358:intron | 35.0% |
| ! | GTTTTTCCAATAAGAGCAGA+GGG | + | chr5.1:288337-288356 | None:intergenic | 35.0% |
| ! | TTATGTTTTCTTGCAGTCGT+TGG | - | chr5.1:288899-288918 | MS.gene92358:intron | 35.0% |
| !! | AACTTTGGGATTCCTCAATA+CGG | - | chr5.1:287765-287784 | MS.gene92358:intron | 35.0% |
| !! | GAAACATTGGCTTCTATACT+TGG | - | chr5.1:290474-290493 | MS.gene92358:CDS | 35.0% |
| !! | GTTGATGGTGTTCAATTCAA+AGG | - | chr5.1:289605-289624 | MS.gene92358:CDS | 35.0% |
| !! | GTTTCTTTGCTTTGAAGGTT+TGG | - | chr5.1:288188-288207 | MS.gene92358:CDS | 35.0% |
| !! | TGTTTTTGCAGCTACATTCA+GGG | + | chr5.1:290698-290717 | None:intergenic | 35.0% |
| !! | TTCTGAAATCAGAGCAATCA+TGG | - | chr5.1:291181-291200 | MS.gene92358:CDS | 35.0% |
| !!! | TGGGTTATTTTGATTGGCTT+GGG | - | chr5.1:290944-290963 | MS.gene92358:intron | 35.0% |
| !!! | TGTACTTTTTCTCCTTCATC+GGG | + | chr5.1:288822-288841 | None:intergenic | 35.0% |
| !!! | TTGGGTTATTTTGATTGGCT+TGG | - | chr5.1:290943-290962 | MS.gene92358:intron | 35.0% |
| AAGTCCCAATGCATAAACCA+TGG | - | chr5.1:288634-288653 | MS.gene92358:intron | 40.0% | |
| AATCACGATCCTTTAGCTGA+GGG | - | chr5.1:289765-289784 | MS.gene92358:intron | 40.0% | |
| ACAACACAGCATAGAAGTGA+AGG | + | chr5.1:289734-289753 | None:intergenic | 40.0% | |
| ACAATACCCTCTGCTCTTAT+TGG | - | chr5.1:288328-288347 | MS.gene92358:intron | 40.0% | |
| ACCAATAGTAACGATGAGTG+TGG | - | chr5.1:288469-288488 | MS.gene92358:intron | 40.0% | |
| AGATCAACAATGGAGGATGT+TGG | - | chr5.1:289878-289897 | MS.gene92358:CDS | 40.0% | |
| AGCTAATATCACTGCATGCA+AGG | - | chr5.1:289458-289477 | MS.gene92358:CDS | 40.0% | |
| AGGGACTAAAGGGATCAAAA+TGG | - | chr5.1:288120-288139 | MS.gene92358:CDS | 40.0% | |
| AGTCCCAATGCATAAACCAT+GGG | - | chr5.1:288635-288654 | MS.gene92358:intron | 40.0% | |
| ATCTCCCATGGTTTATGCAT+TGG | + | chr5.1:288642-288661 | None:intergenic | 40.0% | |
| ATTCAGAAAGCTACAGAGCA+GGG | + | chr5.1:290167-290186 | None:intergenic | 40.0% | |
| ATTGAACACCATCAACCAAG+GGG | + | chr5.1:289601-289620 | None:intergenic | 40.0% | |
| CAAAAGAAACCGAAAAGCCT+TGG | - | chr5.1:288758-288777 | MS.gene92358:intron | 40.0% | |
| CACAGGAAATCAGAAGAATG+AGG | + | chr5.1:289380-289399 | None:intergenic | 40.0% | |
| CAGACAATATCGTGGTAAAC+TGG | - | chr5.1:289221-289240 | MS.gene92358:intron | 40.0% | |
| CATTGCTCAAACAAACAGCT+GGG | + | chr5.1:289299-289318 | None:intergenic | 40.0% | |
| GAATTGAACACCATCAACCA+AGG | + | chr5.1:289603-289622 | None:intergenic | 40.0% | |
| GACGGTTATACAACTTGTGA+AGG | - | chr5.1:289629-289648 | MS.gene92358:CDS | 40.0% | |
| GCAAAGATTGACAAGTGCAT+GGG | - | chr5.1:288990-289009 | MS.gene92358:CDS | 40.0% | |
| GCATATTTCCCTTGTACCAA+AGG | + | chr5.1:289337-289356 | None:intergenic | 40.0% | |
| GGGACTAAAGGGATCAAAAT+GGG | - | chr5.1:288121-288140 | MS.gene92358:CDS | 40.0% | |
| GGTGTGTCCATAGTAATCAA+GGG | + | chr5.1:288268-288287 | None:intergenic | 40.0% | |
| GGTGTTCAATTCAAAGGAGA+CGG | - | chr5.1:289611-289630 | MS.gene92358:CDS | 40.0% | |
| GTAACTAACTTCCACGATCA+AGG | + | chr5.1:287908-287927 | None:intergenic | 40.0% | |
| GTTTCTTCTGTGTTTGCAGT+CGG | - | chr5.1:289838-289857 | MS.gene92358:CDS | 40.0% | |
| TAATCACGATCCTTTAGCTG+AGG | - | chr5.1:289764-289783 | MS.gene92358:intron | 40.0% | |
| TATCGTGGTAAACTGGAGAA+AGG | - | chr5.1:289228-289247 | MS.gene92358:intron | 40.0% | |
| TATTCAGAAAGCTACAGAGC+AGG | + | chr5.1:290168-290187 | None:intergenic | 40.0% | |
| TCAAATTAGATGCCCGATGA+AGG | - | chr5.1:288807-288826 | MS.gene92358:CDS | 40.0% | |
| TCCACACTCATCGTTACTAT+TGG | + | chr5.1:288473-288492 | None:intergenic | 40.0% | |
| TCTATGCTGTGTTGTGCATA+GGG | - | chr5.1:289739-289758 | MS.gene92358:intron | 40.0% | |
| TCTCCCATGGTTTATGCATT+GGG | + | chr5.1:288641-288660 | None:intergenic | 40.0% | |
| TCTTCCTTCAAATCCAAACC+TGG | - | chr5.1:287861-287880 | MS.gene92358:intron | 40.0% | |
| TGCAAAGATTGACAAGTGCA+TGG | - | chr5.1:288989-289008 | MS.gene92358:CDS | 40.0% | |
| TGTAGCTGCAAAAACACTTG+GGG | - | chr5.1:290702-290721 | MS.gene92358:intron | 40.0% | |
| TGTTAATCTTGACTGGAGAG+AGG | - | chr5.1:288405-288424 | MS.gene92358:intron | 40.0% | |
| TTAAATGCCAGTGTCCTACA+GGG | - | chr5.1:290071-290090 | MS.gene92358:CDS | 40.0% | |
| TTACTCAATGTAAACGCGTG+AGG | + | chr5.1:288607-288626 | None:intergenic | 40.0% | |
| TTCTATGCTGTGTTGTGCAT+AGG | - | chr5.1:289738-289757 | MS.gene92358:intron | 40.0% | |
| ! | GAATTTTCAGAATCGGCATC+AGG | + | chr5.1:289020-289039 | None:intergenic | 40.0% |
| ! | GGCTATTTGTTCTGGATTTG+AGG | - | chr5.1:289263-289282 | MS.gene92358:CDS | 40.0% |
| ! | TTGTGTAAACAGGATGATGG+AGG | - | chr5.1:290046-290065 | MS.gene92358:CDS | 40.0% |
| !! | GTGTTTTTGCAGCTACATTC+AGG | + | chr5.1:290699-290718 | None:intergenic | 40.0% |
| !!! | ACTGGTTTTGTAGATTGGGA+AGG | - | chr5.1:289152-289171 | MS.gene92358:intron | 40.0% |
| !!! | CTGGTTTTGTAGATTGGGAA+GGG | - | chr5.1:289153-289172 | MS.gene92358:intron | 40.0% |
| AACTTCCACGATCAAGGAGA+AGG | + | chr5.1:287902-287921 | None:intergenic | 45.0% | |
| ACAGTGCGATCGGTAACTTT+GGG | - | chr5.1:287751-287770 | MS.gene92358:intron | 45.0% | |
| ACTCGTTGCCGATGATATTG+AGG | - | chr5.1:288240-288259 | MS.gene92358:intron | 45.0% | |
| ACTTCAGCACAGGCTATGAT+GGG | - | chr5.1:288686-288705 | MS.gene92358:intron | 45.0% | |
| AGAAAATGCATGTCCGTTCC+GGG | + | chr5.1:289911-289930 | None:intergenic | 45.0% | |
| AGAATCTGCAGCTACTTGAC+TGG | + | chr5.1:290526-290545 | None:intergenic | 45.0% | |
| AGCACCAGGTTTGGATTTGA+AGG | + | chr5.1:287868-287887 | None:intergenic | 45.0% | |
| AGCAGATGAGACATCCTCTT+CGG | + | chr5.1:288290-288309 | None:intergenic | 45.0% | |
| AGCTATGACTGCAGTTGTAG+TGG | - | chr5.1:290726-290745 | MS.gene92358:intron | 45.0% | |
| ATCGTGTCGAGTATGAGTTG+TGG | - | chr5.1:288446-288465 | MS.gene92358:intron | 45.0% | |
| ATTTGTTTCCACGTCTGCAC+AGG | + | chr5.1:289397-289416 | None:intergenic | 45.0% | |
| CAAGGGCTCCTCAATATCAT+CGG | + | chr5.1:288251-288270 | None:intergenic | 45.0% | |
| CACAATGCTTGTTCAACCCA+TGG | + | chr5.1:290556-290575 | None:intergenic | 45.0% | |
| CAGAAAATGCATGTCCGTTC+CGG | + | chr5.1:289912-289931 | None:intergenic | 45.0% | |
| CAGTCAGGCAAAATCCACTT+GGG | - | chr5.1:290913-290932 | MS.gene92358:intron | 45.0% | |
| CAGTGTCCTACAGGGTTTAA+AGG | - | chr5.1:290079-290098 | MS.gene92358:CDS | 45.0% | |
| CCAGCTGTTTGTTTGAGCAA+TGG | - | chr5.1:289297-289316 | MS.gene92358:CDS | 45.0% | |
| CCATCACCTTTAAACCCTGT+AGG | + | chr5.1:290088-290107 | None:intergenic | 45.0% | |
| CCATTGCTCAAACAAACAGC+TGG | + | chr5.1:289300-289319 | None:intergenic | 45.0% | |
| CCTACAGGGTTTAAAGGTGA+TGG | - | chr5.1:290085-290104 | MS.gene92358:CDS | 45.0% | |
| CGTTGCAAGATCAACAATGG+AGG | - | chr5.1:289871-289890 | MS.gene92358:CDS | 45.0% | |
| CTCCAGTGAAACAAACAGAG+AGG | + | chr5.1:290430-290449 | None:intergenic | 45.0% | |
| CTCCTCTCTGTTTGTTTCAC+TGG | - | chr5.1:290425-290444 | MS.gene92358:CDS | 45.0% | |
| CTTTAAACCCTGTAGGACAC+TGG | + | chr5.1:290081-290100 | None:intergenic | 45.0% | |
| GCACAGATCTTAGAGAAAGG+AGG | - | chr5.1:288541-288560 | MS.gene92358:intron | 45.0% | |
| GCAGATTCTTCGTAGTCCAT+GGG | - | chr5.1:290537-290556 | MS.gene92358:CDS | 45.0% | |
| GCAGCACAGATCTTAGAGAA+AGG | - | chr5.1:288538-288557 | MS.gene92358:intron | 45.0% | |
| GGAAAACATGACAGTGCGAT+CGG | - | chr5.1:287741-287760 | MS.gene92358:intron | 45.0% | |
| GGGTGTGTCCATAGTAATCA+AGG | + | chr5.1:288269-288288 | None:intergenic | 45.0% | |
| GTTAAATGCCAGTGTCCTAC+AGG | - | chr5.1:290070-290089 | MS.gene92358:CDS | 45.0% | |
| TACAGGTAAAACTGCCAGTC+AGG | - | chr5.1:290898-290917 | MS.gene92358:intron | 45.0% | |
| TCATACTCGACACGATCATC+AGG | + | chr5.1:288442-288461 | None:intergenic | 45.0% | |
| TCTGCTGCATTCTCTCAGTT+TGG | - | chr5.1:291019-291038 | MS.gene92358:CDS | 45.0% | |
| TGAAGGATGCCATTAGTGCT+GGG | - | chr5.1:288371-288390 | MS.gene92358:intron | 45.0% | |
| TGACAAACAACGGTGGTTGT+TGG | - | chr5.1:289424-289443 | MS.gene92358:CDS | 45.0% | |
| TGAGGAGCCCTTGATTACTA+TGG | - | chr5.1:288258-288277 | MS.gene92358:intron | 45.0% | |
| TGCAGATTCTTCGTAGTCCA+TGG | - | chr5.1:290536-290555 | MS.gene92358:CDS | 45.0% | |
| TTCAGAAAGCTACAGAGCAG+GGG | + | chr5.1:290166-290185 | None:intergenic | 45.0% | |
| TTGAAGGATGCCATTAGTGC+TGG | - | chr5.1:288370-288389 | MS.gene92358:intron | 45.0% | |
| ! | AGGCTATGATGGGAAAGATG+TGG | - | chr5.1:288696-288715 | MS.gene92358:intron | 45.0% |
| ! | CGTGATTTGGAACTTCTGCT+TGG | + | chr5.1:291229-291248 | None:intergenic | 45.0% |
| ! | GAAGGTTTGGAATGCTCAGA+AGG | - | chr5.1:288201-288220 | MS.gene92358:CDS | 45.0% |
| ! | GAGGCAGCTATGTGTTTTCA+AGG | - | chr5.1:288732-288751 | MS.gene92358:intron | 45.0% |
| ! | TTTGGGATTCCTCAATACGG+TGG | - | chr5.1:287768-287787 | MS.gene92358:intron | 45.0% |
| !! | ATTGGCTTGGGTATGATTGC+TGG | - | chr5.1:290956-290975 | MS.gene92358:intron | 45.0% |
| !! | GCAGCTATGTGTTTTCAAGG+TGG | - | chr5.1:288735-288754 | MS.gene92358:intron | 45.0% |
| !! | GGTGGTTTTGCAGCAATACA+TGG | - | chr5.1:291157-291176 | MS.gene92358:CDS | 45.0% |
| !!! | AATCCACTTGGGCTGCTTTT+TGG | - | chr5.1:290924-290943 | MS.gene92358:intron | 45.0% |
| !!! | ATCCACTTGGGCTGCTTTTT+GGG | - | chr5.1:290925-290944 | MS.gene92358:intron | 45.0% |
| !!! | GGAGAAAGGTGCCGTTTTAA+AGG | - | chr5.1:289242-289261 | MS.gene92358:intron | 45.0% |
| AAACAACGGTGGTTGTTGGC+AGG | - | chr5.1:289428-289447 | MS.gene92358:CDS | 50.0% | |
| AAACCGAAAAGCCTTGGGTG+TGG | - | chr5.1:288764-288783 | MS.gene92358:intron | 50.0% | |
| AACCCAAAAAGCAGCCCAAG+TGG | + | chr5.1:290930-290949 | None:intergenic | 50.0% | |
| AACTTCTGCTTGGCTGTCCA+GGG | + | chr5.1:291219-291238 | None:intergenic | 50.0% | |
| ACACAACTACGAGTGCACGT+GGG | + | chr5.1:289811-289830 | None:intergenic | 50.0% | |
| ACCATCCTTCTCCTTGATCG+TGG | - | chr5.1:287894-287913 | MS.gene92358:CDS | 50.0% | |
| ATCTGCCAGGATACATTCCG+TGG | - | chr5.1:289560-289579 | MS.gene92358:intron | 50.0% | |
| CACAGATGTCCCTCAGCTAA+AGG | + | chr5.1:289777-289796 | None:intergenic | 50.0% | |
| CATGGCACAATATATGCCCC+TGG | - | chr5.1:291199-291218 | MS.gene92358:CDS | 50.0% | |
| CCAGTCAGGCAAAATCCACT+TGG | - | chr5.1:290912-290931 | MS.gene92358:intron | 50.0% | |
| CGATCAAGGAGAAGGATGGT+AGG | + | chr5.1:287894-287913 | None:intergenic | 50.0% | |
| CTTGGGTATGATTGCTGGAG+GGG | - | chr5.1:290961-290980 | MS.gene92358:intron | 50.0% | |
| GAAGGATGCCATTAGTGCTG+GGG | - | chr5.1:288372-288391 | MS.gene92358:intron | 50.0% | |
| GACAGTGCGATCGGTAACTT+TGG | - | chr5.1:287750-287769 | MS.gene92358:intron | 50.0% | |
| GACCATATCCCCAGCACTAA+TGG | + | chr5.1:288383-288402 | None:intergenic | 50.0% | |
| GACTTCAGCACAGGCTATGA+TGG | - | chr5.1:288685-288704 | MS.gene92358:intron | 50.0% | |
| GAGTGCTTGACAAACAACGG+TGG | - | chr5.1:289417-289436 | MS.gene92358:intron | 50.0% | |
| GCAGATGAGACATCCTCTTC+GGG | + | chr5.1:288289-288308 | None:intergenic | 50.0% | |
| GCTTGGGTATGATTGCTGGA+GGG | - | chr5.1:290960-290979 | MS.gene92358:intron | 50.0% | |
| GGTGGAGAAGAACAGCTTGT+CGG | - | chr5.1:287695-287714 | MS.gene92358:CDS | 50.0% | |
| TACTATGGACACACCCGAAG+AGG | - | chr5.1:288273-288292 | MS.gene92358:intron | 50.0% | |
| TAGATTGGGAAGGGATCACG+CGG | - | chr5.1:289162-289181 | MS.gene92358:intron | 50.0% | |
| TCAGAAAGCTACAGAGCAGG+GGG | + | chr5.1:290165-290184 | None:intergenic | 50.0% | |
| TCCACGATCAAGGAGAAGGA+TGG | + | chr5.1:287898-287917 | None:intergenic | 50.0% | |
| TCCTCAATACGGTGGTAGCA+TGG | - | chr5.1:287776-287795 | MS.gene92358:intron | 50.0% | |
| TCGACACGATCATCAGGATG+AGG | + | chr5.1:288436-288455 | None:intergenic | 50.0% | |
| TCTGATTTCCTGTGCAGACG+TGG | - | chr5.1:289386-289405 | MS.gene92358:intron | 50.0% | |
| TCTGCCAGGATACATTCCGT+GGG | - | chr5.1:289561-289580 | MS.gene92358:intron | 50.0% | |
| TCTTCTGTGTTTGCAGTCGG+TGG | - | chr5.1:289841-289860 | MS.gene92358:CDS | 50.0% | |
| TGTGAATGCCCCTTGGTTGA+TGG | - | chr5.1:289590-289609 | MS.gene92358:CDS | 50.0% | |
| TTGGGTATGATTGCTGGAGG+GGG | - | chr5.1:290962-290981 | MS.gene92358:intron | 50.0% | |
| TTGTTGATCTTGCAACGCCC+AGG | + | chr5.1:289868-289887 | None:intergenic | 50.0% | |
| ! | GGGCGTTGCAAGATCAACAA+TGG | - | chr5.1:289868-289887 | MS.gene92358:CDS | 50.0% |
| ! | GTTTGGAATGCTCAGAAGGC+TGG | - | chr5.1:288205-288224 | MS.gene92358:CDS | 50.0% |
| ! | TGCCATTAGTGCTGGGGATA+TGG | - | chr5.1:288378-288397 | MS.gene92358:intron | 50.0% |
| !! | CCAAGTGGATTTTGCCTGAC+TGG | + | chr5.1:290915-290934 | None:intergenic | 50.0% |
| ACATAGTCCCACCACACCCA+AGG | + | chr5.1:288778-288797 | None:intergenic | 55.0% | |
| ACTTCTGCTTGGCTGTCCAG+GGG | + | chr5.1:291218-291237 | None:intergenic | 55.0% | |
| AGAAAGCTACAGAGCAGGGG+GGG | + | chr5.1:290163-290182 | None:intergenic | 55.0% | |
| CAATACGGTGGTAGCATGGC+TGG | - | chr5.1:287780-287799 | MS.gene92358:intron | 55.0% | |
| CACAACTACGAGTGCACGTG+GGG | + | chr5.1:289810-289829 | None:intergenic | 55.0% | |
| CACACAACTACGAGTGCACG+TGG | + | chr5.1:289812-289831 | None:intergenic | 55.0% | |
| CAGAAAGCTACAGAGCAGGG+GGG | + | chr5.1:290164-290183 | None:intergenic | 55.0% | |
| CCATGGGAGATATTGCGCTC+CGG | - | chr5.1:288651-288670 | MS.gene92358:intron | 55.0% | |
| CGAAAAGCCTTGGGTGTGGT+GGG | - | chr5.1:288768-288787 | MS.gene92358:intron | 55.0% | |
| CTGAAGTCCTGCTCAGGATC+CGG | + | chr5.1:288673-288692 | None:intergenic | 55.0% | |
| GAACTTCTGCTTGGCTGTCC+AGG | + | chr5.1:291220-291239 | None:intergenic | 55.0% | |
| GAGGATGTTGGCATGATGCC+CGG | - | chr5.1:289890-289909 | MS.gene92358:CDS | 55.0% | |
| GATGTCAACGGCGAGATTCG+TGG | - | chr5.1:287674-287693 | MS.gene92358:CDS | 55.0% | |
| GCCATGCTACCACCGTATTG+AGG | + | chr5.1:287780-287799 | None:intergenic | 55.0% | |
| GCGAGTATGTGAATGCCCCT+TGG | - | chr5.1:289583-289602 | MS.gene92358:CDS | 55.0% | |
| GGCATTCACATACTCGCCCA+CGG | + | chr5.1:289580-289599 | None:intergenic | 55.0% | |
| GGCTTGGGTATGATTGCTGG+AGG | - | chr5.1:290959-290978 | MS.gene92358:intron | 55.0% | |
| TCAGAAGGCTGGAGCTTCTG+CGG | - | chr5.1:288216-288235 | MS.gene92358:CDS | 55.0% | |
| TGTTGGCATGATGCCCGGAA+CGG | - | chr5.1:289895-289914 | MS.gene92358:CDS | 55.0% | |
| TGTTTGCAGTCGGTGGACCT+GGG | - | chr5.1:289848-289867 | MS.gene92358:CDS | 55.0% | |
| ! | CCACCACACCCAAGGCTTTT+CGG | + | chr5.1:288770-288789 | None:intergenic | 55.0% |
| !! | AGGATGGTAGGAAGAGCACC+AGG | + | chr5.1:287882-287901 | None:intergenic | 55.0% |
| !! | GGTAGGAAGAGCACCAGGTT+TGG | + | chr5.1:287877-287896 | None:intergenic | 55.0% |
| CCGAAAAGCCTTGGGTGTGG+TGG | - | chr5.1:288767-288786 | MS.gene92358:intron | 60.0% | |
| CCGGAGCGCAATATCTCCCA+TGG | + | chr5.1:288654-288673 | None:intergenic | 60.0% | |
| CCTGAGCAGGACTTCAGCAC+AGG | - | chr5.1:288676-288695 | MS.gene92358:intron | 60.0% | |
| CCTGTGCTGAAGTCCTGCTC+AGG | + | chr5.1:288679-288698 | None:intergenic | 60.0% | |
| CTCGCCCACGGAATGTATCC+TGG | + | chr5.1:289568-289587 | None:intergenic | 60.0% | |
| GTCAACGGCGAGATTCGTGG+TGG | - | chr5.1:287677-287696 | MS.gene92358:CDS | 60.0% | |
| GTGTTTGCAGTCGGTGGACC+TGG | - | chr5.1:289847-289866 | MS.gene92358:CDS | 60.0% | |
| TTGCGCTCCGGATCCTGAGC+AGG | - | chr5.1:288663-288682 | MS.gene92358:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 287630 | 291268 | 287630 | ID=MS.gene92358 |
| chr5.1 | mRNA | 287630 | 291268 | 287630 | ID=MS.gene92358.t1;Parent=MS.gene92358 |
| chr5.1 | exon | 290980 | 291268 | 290980 | ID=MS.gene92358.t1.exon1;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 290980 | 291268 | 290980 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 290021 | 290713 | 290021 | ID=MS.gene92358.t1.exon2;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 290021 | 290713 | 290021 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 289831 | 289919 | 289831 | ID=MS.gene92358.t1.exon3;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 289831 | 289919 | 289831 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 289580 | 289733 | 289580 | ID=MS.gene92358.t1.exon4;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 289580 | 289733 | 289580 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 289419 | 289495 | 289419 | ID=MS.gene92358.t1.exon5;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 289419 | 289495 | 289419 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 289248 | 289329 | 289248 | ID=MS.gene92358.t1.exon6;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 289248 | 289329 | 289248 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 288959 | 289041 | 288959 | ID=MS.gene92358.t1.exon7;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 288959 | 289041 | 288959 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 288774 | 288840 | 288774 | ID=MS.gene92358.t1.exon8;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 288774 | 288840 | 288774 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 288112 | 288240 | 288112 | ID=MS.gene92358.t1.exon9;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 288112 | 288240 | 288112 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 287886 | 287995 | 287886 | ID=MS.gene92358.t1.exon10;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 287886 | 287995 | 287886 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| chr5.1 | exon | 287630 | 287728 | 287630 | ID=MS.gene92358.t1.exon11;Parent=MS.gene92358.t1 |
| chr5.1 | CDS | 287630 | 287728 | 287630 | ID=cds.MS.gene92358.t1;Parent=MS.gene92358.t1 |
| Gene Sequence |
| Protein sequence |
