Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047362.t1 | XP_024631490.1 | 93.8 | 306 | 19 | 0 | 1 | 306 | 2 | 307 | 2.60E-165 | 591.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047362.t1 | Q6AY46 | 45.2 | 294 | 146 | 6 | 10 | 300 | 4 | 285 | 8.8e-61 | 235.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047362.t1 | A2Q516 | 93.8 | 306 | 19 | 0 | 1 | 306 | 2 | 307 | 1.9e-165 | 591.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene24165 | MS.gene047362 | PPI |
MS.gene027187 | MS.gene047362 | PPI |
MS.gene047362 | MS.gene27063 | PPI |
MS.gene047362 | MS.gene30096 | PPI |
MS.gene047362 | MS.gene64008 | PPI |
MS.gene047362 | MS.gene82633 | PPI |
MS.gene21989 | MS.gene047362 | PPI |
MS.gene047362 | MS.gene64211 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047362.t1 | MTR_6g047800 | 77.670 | 309 | 63 | 4 | 1 | 303 | 1 | 309 | 6.73e-171 | 476 |
MS.gene047362.t1 | MTR_6g047800 | 78.667 | 300 | 58 | 4 | 10 | 303 | 1 | 300 | 9.96e-168 | 468 |
MS.gene047362.t1 | MTR_2g014590 | 92.641 | 231 | 17 | 0 | 1 | 231 | 2 | 232 | 3.79e-159 | 443 |
MS.gene047362.t1 | MTR_2g014570 | 98.361 | 61 | 1 | 0 | 246 | 306 | 6 | 66 | 1.82e-38 | 130 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene047362.t1 | AT5G14600 | 68.868 | 318 | 87 | 2 | 1 | 306 | 1 | 318 | 3.41e-163 | 457 |
Find 58 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTGCTTGGTTCTTGAATC+TGG | 0.235361 | 2.3:+70294647 | MS.gene047362:CDS |
CTCTAAAGTATTCAACAATA+AGG | 0.250501 | 2.3:+70294502 | MS.gene047362:CDS |
GATTAATCAGTTGTGGAGTT+AGG | 0.260288 | 2.3:+70295621 | MS.gene047362:CDS |
TTGTGGAGTTAGGGACATTC+AGG | 0.262187 | 2.3:+70295631 | MS.gene047362:CDS |
GATTGGATTGGAAAGCCTTT+TGG | 0.269508 | 2.3:+70294479 | MS.gene047362:CDS |
TAGCTCCCACACCAGAATTA+TGG | 0.286409 | 2.3:+70294543 | MS.gene047362:CDS |
GGATTTCCTGATGAGTTTAA+TGG | 0.286421 | 2.3:+70295659 | MS.gene047362:CDS |
AACACTAGAGTCCATAATTC+TGG | 0.292506 | 2.3:-70294554 | None:intergenic |
CAGATGCTGCCCTTTGTTCA+TGG | 0.315015 | 2.3:-70294745 | None:intergenic |
TCCTGATGAGTTTAATGGCT+TGG | 0.351169 | 2.3:+70295664 | MS.gene047362:CDS |
ATGTATTTGGAGATTGTTCC+TGG | 0.387434 | 2.3:+70294626 | MS.gene047362:CDS |
GTGAAGACGAAAAGCTTTCA+TGG | 0.388067 | 2.3:+70297781 | MS.gene047362:CDS |
CGTTGTACTTGTTCGATACA+TGG | 0.406361 | 2.3:-70295782 | None:intergenic |
TTTAAACATTCTGATTGGAT+TGG | 0.406520 | 2.3:+70294467 | MS.gene047362:CDS |
AATGTTTAAAAGCACCTAAA+GGG | 0.409810 | 2.3:-70294454 | None:intergenic |
CTTGAATCTGGAACCGGTAG+TGG | 0.410216 | 2.3:+70294659 | MS.gene047362:CDS |
CTTTGACTACTTCACTTGCT+AGG | 0.430680 | 2.3:+70294684 | MS.gene047362:CDS |
TCTAAAGTATTCAACAATAA+GGG | 0.439227 | 2.3:+70294503 | MS.gene047362:CDS |
ATTAATCAGTTGTGGAGTTA+GGG | 0.447067 | 2.3:+70295622 | MS.gene047362:CDS |
GCCAAGCCATTAAACTCATC+AGG | 0.456967 | 2.3:-70295665 | None:intergenic |
GAATGTTTAAAAGCACCTAA+AGG | 0.458705 | 2.3:-70294455 | None:intergenic |
GATTGCTGTCACGAATTGTT+CGG | 0.459234 | 2.3:-70294361 | None:intergenic |
GGAGATTGTTCCTGGTTGCT+TGG | 0.459797 | 2.3:+70294634 | MS.gene047362:CDS |
GCACTTCAGTCCTGCTTCAC+AGG | 0.472308 | 2.3:+70295815 | MS.gene047362:CDS |
TTGAATACTTTAGAGCCAAA+AGG | 0.478439 | 2.3:-70294494 | None:intergenic |
AATGTATAAACATGTCCGTT+TGG | 0.481340 | 2.3:-70294716 | None:intergenic |
TTGGTTCTTGAATCTGGAAC+CGG | 0.485271 | 2.3:+70294653 | MS.gene047362:CDS |
GAAAGATATAAAGACATTTG+AGG | 0.513281 | 2.3:+70297729 | MS.gene047362:intron |
ATTTGATTTCCATGAACAAA+GGG | 0.526401 | 2.3:+70294736 | MS.gene047362:CDS |
GCTAGGGCAGTTGCGCCAAA+CGG | 0.528305 | 2.3:+70294701 | MS.gene047362:CDS |
CATTTGATTTCCATGAACAA+AGG | 0.531378 | 2.3:+70294735 | MS.gene047362:CDS |
GCGAAAATGCTTAAACAAGA+TGG | 0.531846 | 2.3:+70295740 | MS.gene047362:CDS |
CAATCCTACTTCTTCTGTCA+TGG | 0.536704 | 2.3:+70297867 | MS.gene047362:CDS |
CCTAAAAGTACCTGTGAAGC+AGG | 0.543977 | 2.3:-70295825 | None:intergenic |
GTTAGGGACATTCAGGGTGA+GGG | 0.545604 | 2.3:+70295638 | MS.gene047362:CDS |
TTTGACTACTTCACTTGCTA+GGG | 0.548143 | 2.3:+70294685 | MS.gene047362:CDS |
GAAAGCTGTAACAGTGTCTG+AGG | 0.556493 | 2.3:+70294415 | MS.gene047362:CDS |
TGTGGAGTTAGGGACATTCA+GGG | 0.558563 | 2.3:+70295632 | MS.gene047362:CDS |
TTAAGCAGATTAATCAGTTG+TGG | 0.568079 | 2.3:+70295614 | MS.gene047362:CDS |
GGACTCTAGTGTTAAATCAC+AGG | 0.580184 | 2.3:+70294564 | MS.gene047362:CDS |
AGAGTCCATAATTCTGGTGT+GGG | 0.584035 | 2.3:-70294548 | None:intergenic |
TAGAGTCCATAATTCTGGTG+TGG | 0.585946 | 2.3:-70294549 | None:intergenic |
AGTTAGGGACATTCAGGGTG+AGG | 0.591437 | 2.3:+70295637 | MS.gene047362:CDS |
GGAATGGCTAACCAAGGTTG+AGG | 0.592393 | 2.3:-70295710 | None:intergenic |
GTTATTGTTTACGTAAAACA+TGG | 0.594494 | 2.3:+70294386 | MS.gene047362:CDS |
CTAGCCATGACAGAAGAAGT+AGG | 0.599460 | 2.3:-70297871 | None:intergenic |
AACAAAGGGCAGCATCTGCT+AGG | 0.601675 | 2.3:+70294750 | MS.gene047362:CDS |
AAGAGAAGACAGTGTTCAGA+TGG | 0.602416 | 2.3:+70297829 | MS.gene047362:CDS |
GAACACTGTCTTCTCTTGCA+AGG | 0.615282 | 2.3:-70297823 | None:intergenic |
GATTCAAGAACCAAGCAACC+AGG | 0.619604 | 2.3:-70294644 | None:intergenic |
TGACCTCTAGCCTCATCACA+AGG | 0.640370 | 2.3:-70297895 | None:intergenic |
CATGGCTAGACCTTGTGATG+AGG | 0.646852 | 2.3:+70297885 | MS.gene047362:CDS |
AGTAGTCAAAGATCCACTAC+CGG | 0.661131 | 2.3:-70294672 | None:intergenic |
AAAGCTGTAACAGTGTCTGA+GGG | 0.675726 | 2.3:+70294416 | MS.gene047362:CDS |
AGACCTTGTGATGAGGCTAG+AGG | 0.676272 | 2.3:+70297892 | MS.gene047362:CDS |
AGCTTTCATGGAGATGACAG+TGG | 0.682269 | 2.3:+70297793 | MS.gene047362:CDS |
GCTGAAGGAATGGCTAACCA+AGG | 0.691556 | 2.3:-70295716 | None:intergenic |
GATGAGGCTAGAGGTCACAC+AGG | 0.703330 | 2.3:+70297901 | MS.gene047362:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATAAAATACAATTAATTT+AGG | + | chr2.3:70297668-70297687 | MS.gene047362:intron | 10.0% |
!! | TGATTTAAATTTCTTATATA+TGG | + | chr2.3:70295429-70295448 | MS.gene047362:intron | 10.0% |
!!! | TTTTTTAGAAACTTAATATA+TGG | + | chr2.3:70294946-70294965 | MS.gene047362:intron | 10.0% |
!! | AAAATCAGAAAATATATATG+AGG | - | chr2.3:70296067-70296086 | None:intergenic | 15.0% |
!! | AGAATAAATAGAATAGAATA+TGG | - | chr2.3:70297635-70297654 | None:intergenic | 15.0% |
!! | GAATAAATAGAATAGAATAT+GGG | - | chr2.3:70297634-70297653 | None:intergenic | 15.0% |
!! | TCGAAAAAATATATATTCAT+TGG | + | chr2.3:70296202-70296221 | MS.gene047362:intron | 15.0% |
!!! | TAATTTGTTAATTATTTGCA+GGG | + | chr2.3:70295571-70295590 | MS.gene047362:intron | 15.0% |
!!! | TAGTTTTGTTATTATGTATT+TGG | + | chr2.3:70294613-70294632 | MS.gene047362:CDS | 15.0% |
!!! | TTAATTTGTTAATTATTTGC+AGG | + | chr2.3:70295570-70295589 | MS.gene047362:intron | 15.0% |
!! | AAGTGCATTTAAAAATAGAT+TGG | - | chr2.3:70296012-70296031 | None:intergenic | 20.0% |
!! | AATTCTTCTAATCAATTCTT+TGG | + | chr2.3:70296626-70296645 | MS.gene047362:intron | 20.0% |
!! | ACTGTATTAAGAGATATAAA+AGG | + | chr2.3:70297537-70297556 | MS.gene047362:intron | 20.0% |
!! | ATTCTTCTAATCAATTCTTT+GGG | + | chr2.3:70296627-70296646 | MS.gene047362:intron | 20.0% |
!! | CATAAGCAAAATATAAACAT+TGG | - | chr2.3:70297708-70297727 | None:intergenic | 20.0% |
!! | CTGTATTAAGAGATATAAAA+GGG | + | chr2.3:70297538-70297557 | MS.gene047362:intron | 20.0% |
!! | TAACAAAATTGTGTAACAAA+GGG | + | chr2.3:70297503-70297522 | MS.gene047362:intron | 20.0% |
!! | TACTTCATTATTCAAAATCT+TGG | + | chr2.3:70295336-70295355 | MS.gene047362:intron | 20.0% |
!! | TATGTTATTAGAAAGTAAAC+AGG | - | chr2.3:70295852-70295871 | None:intergenic | 20.0% |
!! | TGTATTAAGAGATATAAAAG+GGG | + | chr2.3:70297539-70297558 | MS.gene047362:intron | 20.0% |
!! | TTAACTATCCTAATATTTGA+TGG | - | chr2.3:70297063-70297082 | None:intergenic | 20.0% |
!!! | TCTAAAGTATTCAACAATAA+GGG | + | chr2.3:70294503-70294522 | MS.gene047362:CDS | 20.0% |
!!! | TTCATTTTTACTTTGTATGA+AGG | + | chr2.3:70295872-70295891 | MS.gene047362:intron | 20.0% |
! | AAACATTGGAATATGTTAGT+AGG | - | chr2.3:70297694-70297713 | None:intergenic | 25.0% |
! | AAACTACAGAGAATACATTT+CGG | + | chr2.3:70295956-70295975 | MS.gene047362:intron | 25.0% |
! | AACAAAATTGTGTAACAAAG+GGG | + | chr2.3:70297504-70297523 | MS.gene047362:intron | 25.0% |
! | AGCAATAAGAGATAGAAAAA+GGG | + | chr2.3:70296318-70296337 | MS.gene047362:intron | 25.0% |
! | ATAGAATAGAATATGGGAAT+CGG | - | chr2.3:70297628-70297647 | None:intergenic | 25.0% |
! | CTAACAAAATTGTGTAACAA+AGG | + | chr2.3:70297502-70297521 | MS.gene047362:intron | 25.0% |
! | GAAAGATATAAAGACATTTG+AGG | + | chr2.3:70297729-70297748 | MS.gene047362:intron | 25.0% |
! | GAACAATTTGAATTATAAGC+TGG | - | chr2.3:70296775-70296794 | None:intergenic | 25.0% |
! | GTTATTGTTTACGTAAAACA+TGG | + | chr2.3:70294386-70294405 | MS.gene047362:CDS | 25.0% |
! | TCTCTTGATCATAACTAAAA+AGG | - | chr2.3:70295926-70295945 | None:intergenic | 25.0% |
! | TGAATTTATTGATGAAACTC+TGG | + | chr2.3:70296236-70296255 | MS.gene047362:intron | 25.0% |
! | TTCCAAAATAATTTCCTCTA+TGG | + | chr2.3:70297145-70297164 | MS.gene047362:intron | 25.0% |
! | TTTAAACATTCTGATTGGAT+TGG | + | chr2.3:70294467-70294486 | MS.gene047362:CDS | 25.0% |
!! | ATTTGATTTCCATGAACAAA+GGG | + | chr2.3:70294736-70294755 | MS.gene047362:CDS | 25.0% |
!! | CTTAAAGCAATTTTTCTCAA+GGG | - | chr2.3:70296724-70296743 | None:intergenic | 25.0% |
!! | TCTTAAAGCAATTTTTCTCA+AGG | - | chr2.3:70296725-70296744 | None:intergenic | 25.0% |
!! | TTCCATAGAGGAAATTATTT+TGG | - | chr2.3:70297150-70297169 | None:intergenic | 25.0% |
!! | TTCTTTTCTTCCTATGATAA+GGG | + | chr2.3:70295506-70295525 | MS.gene047362:intron | 25.0% |
!! | TTTCTTTTCTTCCTATGATA+AGG | + | chr2.3:70295505-70295524 | MS.gene047362:intron | 25.0% |
!!! | AATGTTTAAAAGCACCTAAA+GGG | - | chr2.3:70294457-70294476 | None:intergenic | 25.0% |
!!! | AATTATTTTGGAAATGGAGA+TGG | - | chr2.3:70297138-70297157 | None:intergenic | 25.0% |
!!! | AGAGGAAATTATTTTGGAAA+TGG | - | chr2.3:70297144-70297163 | None:intergenic | 25.0% |
!!! | CTCTAAAGTATTCAACAATA+AGG | + | chr2.3:70294502-70294521 | MS.gene047362:CDS | 25.0% |
!!! | TTTTTCGAACAAGCTAAAAT+GGG | - | chr2.3:70296190-70296209 | None:intergenic | 25.0% |
!!! | TTTTTTCGAACAAGCTAAAA+TGG | - | chr2.3:70296191-70296210 | None:intergenic | 25.0% |
AATCAGAGTTGTGTTACAAA+AGG | + | chr2.3:70296270-70296289 | MS.gene047362:intron | 30.0% | |
AATGTATAAACATGTCCGTT+TGG | - | chr2.3:70294719-70294738 | None:intergenic | 30.0% | |
AGTACTGTTATGATGAATGA+AGG | - | chr2.3:70296591-70296610 | None:intergenic | 30.0% | |
ATCAGAGTTGTGTTACAAAA+GGG | + | chr2.3:70296271-70296290 | MS.gene047362:intron | 30.0% | |
ATTAATCAGTTGTGGAGTTA+GGG | + | chr2.3:70295622-70295641 | MS.gene047362:CDS | 30.0% | |
ATTACCAAGTCTCAAACAAA+AGG | - | chr2.3:70296818-70296837 | None:intergenic | 30.0% | |
ATTCATTGCAATTCTGATCT+TGG | - | chr2.3:70297372-70297391 | None:intergenic | 30.0% | |
ATTTACTGGATAATTGCTTG+TGG | + | chr2.3:70297449-70297468 | MS.gene047362:intron | 30.0% | |
GAAACTTAATATATGGTCCA+AGG | + | chr2.3:70294953-70294972 | MS.gene047362:intron | 30.0% | |
GAATTCTATCAGAATCAGTT+TGG | + | chr2.3:70296154-70296173 | MS.gene047362:intron | 30.0% | |
GAGCAATAAGAGATAGAAAA+AGG | + | chr2.3:70296317-70296336 | MS.gene047362:intron | 30.0% | |
GGTAGTAATTAATGGTTACA+AGG | - | chr2.3:70297351-70297370 | None:intergenic | 30.0% | |
GTACTGTTATGATGAATGAA+GGG | - | chr2.3:70296590-70296609 | None:intergenic | 30.0% | |
TACTGTTATGATGAATGAAG+GGG | - | chr2.3:70296589-70296608 | None:intergenic | 30.0% | |
TAGAATAGAATATGGGAATC+GGG | - | chr2.3:70297627-70297646 | None:intergenic | 30.0% | |
TATCCTAATATTTGATGGAG+AGG | - | chr2.3:70297058-70297077 | None:intergenic | 30.0% | |
TGGATTTATTGACGAAACTT+TGG | + | chr2.3:70297469-70297488 | MS.gene047362:intron | 30.0% | |
TTAAGCAGATTAATCAGTTG+TGG | + | chr2.3:70295614-70295633 | MS.gene047362:CDS | 30.0% | |
TTACCAAGTCTCAAACAAAA+GGG | - | chr2.3:70296817-70296836 | None:intergenic | 30.0% | |
TTACTTTGTATGAAGGTAGA+TGG | + | chr2.3:70295879-70295898 | MS.gene047362:intron | 30.0% | |
TTCTACATAACCCTTATCAT+AGG | - | chr2.3:70295519-70295538 | None:intergenic | 30.0% | |
TTGTCAAATAGCAGTTACAT+AGG | + | chr2.3:70294906-70294925 | MS.gene047362:intron | 30.0% | |
TTGTGCATGAAATTCTACTT+TGG | - | chr2.3:70296905-70296924 | None:intergenic | 30.0% | |
! | AATTTCTGCCATTTCTGTTT+GGG | + | chr2.3:70297081-70297100 | MS.gene047362:intron | 30.0% |
! | CAGTTTTACTCTTGATTTAC+TGG | + | chr2.3:70297435-70297454 | MS.gene047362:intron | 30.0% |
! | CATTTGATTTCCATGAACAA+AGG | + | chr2.3:70294735-70294754 | MS.gene047362:CDS | 30.0% |
! | CTGATCTTGGTAGTAATTAA+TGG | - | chr2.3:70297359-70297378 | None:intergenic | 30.0% |
! | GTGCTTTTAAACATTCTGAT+TGG | + | chr2.3:70294462-70294481 | MS.gene047362:CDS | 30.0% |
! | TAATTTCTGCCATTTCTGTT+TGG | + | chr2.3:70297080-70297099 | MS.gene047362:intron | 30.0% |
! | TTTTACTAAATAGCGCATCA+CGG | - | chr2.3:70294883-70294902 | None:intergenic | 30.0% |
!! | AACTTTATTCTGGCTTCAAT+TGG | - | chr2.3:70295025-70295044 | None:intergenic | 30.0% |
!! | AAGAGCGTTTAGAAGATTAA+TGG | - | chr2.3:70296428-70296447 | None:intergenic | 30.0% |
!! | ACTTTATTCTGGCTTCAATT+GGG | - | chr2.3:70295024-70295043 | None:intergenic | 30.0% |
!! | AGTGGAACGATATTTTGAAT+TGG | - | chr2.3:70297013-70297032 | None:intergenic | 30.0% |
!! | GAACGATATTTTGAATTGGA+GGG | - | chr2.3:70297009-70297028 | None:intergenic | 30.0% |
!! | GAATGTTTAAAAGCACCTAA+AGG | - | chr2.3:70294458-70294477 | None:intergenic | 30.0% |
!! | TAAAGTGCTAACTTGTTGAT+TGG | + | chr2.3:70296516-70296535 | MS.gene047362:intron | 30.0% |
!! | TTGAATACTTTAGAGCCAAA+AGG | - | chr2.3:70294497-70294516 | None:intergenic | 30.0% |
AACACTAGAGTCCATAATTC+TGG | - | chr2.3:70294557-70294576 | None:intergenic | 35.0% | |
AATTGCAATGAATAACGACC+TGG | + | chr2.3:70297379-70297398 | MS.gene047362:intron | 35.0% | |
ACAGTGGATAGCAAAAAATG+TGG | - | chr2.3:70295200-70295219 | None:intergenic | 35.0% | |
ACTGTTATGATGAATGAAGG+GGG | - | chr2.3:70296588-70296607 | None:intergenic | 35.0% | |
AGAAAATGCACACAAAGATG+AGG | - | chr2.3:70296090-70296109 | None:intergenic | 35.0% | |
AGAATAGAATATGGGAATCG+GGG | - | chr2.3:70297626-70297645 | None:intergenic | 35.0% | |
AGAGAAGTTTGAATCACAGA+AGG | - | chr2.3:70297230-70297249 | None:intergenic | 35.0% | |
AGGACGACATGATCATTTAT+GGG | - | chr2.3:70296451-70296470 | None:intergenic | 35.0% | |
ATGTATTTGGAGATTGTTCC+TGG | + | chr2.3:70294626-70294645 | MS.gene047362:CDS | 35.0% | |
CATCCTCTCCATCAAATATT+AGG | + | chr2.3:70297052-70297071 | MS.gene047362:intron | 35.0% | |
CCACTATTGATACCTTGTAA+GGG | + | chr2.3:70296930-70296949 | MS.gene047362:intron | 35.0% | |
GAACATGATCAATTCCATAG+AGG | - | chr2.3:70297162-70297181 | None:intergenic | 35.0% | |
GATTAATCAGTTGTGGAGTT+AGG | + | chr2.3:70295621-70295640 | MS.gene047362:CDS | 35.0% | |
GCGAAAATGCTTAAACAAGA+TGG | + | chr2.3:70295740-70295759 | MS.gene047362:CDS | 35.0% | |
GGATTTCCTGATGAGTTTAA+TGG | + | chr2.3:70295659-70295678 | MS.gene047362:CDS | 35.0% | |
TACCAAGTCTCAAACAAAAG+GGG | - | chr2.3:70296816-70296835 | None:intergenic | 35.0% | |
TACCAGTGTTAGAATCAGTT+TGG | + | chr2.3:70297406-70297425 | MS.gene047362:intron | 35.0% | |
TATTTCCTTAGTCACACGTA+AGG | + | chr2.3:70295398-70295417 | MS.gene047362:intron | 35.0% | |
TGCATGAAATTCTACTTTGG+AGG | - | chr2.3:70296902-70296921 | None:intergenic | 35.0% | |
TGTCAGCATAAAGTTCTACA+CGG | - | chr2.3:70295231-70295250 | None:intergenic | 35.0% | |
TTCCATTGAAGAATCTAGTG+CGG | - | chr2.3:70296475-70296494 | None:intergenic | 35.0% | |
TTTGAATCACAGAAGGATTG+AGG | - | chr2.3:70297223-70297242 | None:intergenic | 35.0% | |
! | AATTTTTCTCAAGGGACTGA+AGG | - | chr2.3:70296716-70296735 | None:intergenic | 35.0% |
! | ATTTCTGCCATTTCTGTTTG+GGG | + | chr2.3:70297082-70297101 | MS.gene047362:intron | 35.0% |
! | CCTTACAAGGTATCAATAGT+GGG | - | chr2.3:70296932-70296951 | None:intergenic | 35.0% |
! | TTCTACTTTGGAGGATTTGA+AGG | - | chr2.3:70296893-70296912 | None:intergenic | 35.0% |
! | TTTGACTACTTCACTTGCTA+GGG | + | chr2.3:70294685-70294704 | MS.gene047362:CDS | 35.0% |
!! | AGACTTGGTAATGATTCACA+AGG | + | chr2.3:70296826-70296845 | MS.gene047362:intron | 35.0% |
!! | CTTGGCTGATTCTGTATTTT+TGG | + | chr2.3:70295682-70295701 | MS.gene047362:CDS | 35.0% |
!! | GACTTGGTAATGATTCACAA+GGG | + | chr2.3:70296827-70296846 | MS.gene047362:intron | 35.0% |
!! | GGAACGATATTTTGAATTGG+AGG | - | chr2.3:70297010-70297029 | None:intergenic | 35.0% |
!! | TATTTTGAATTGGAGGGTGT+AGG | - | chr2.3:70297003-70297022 | None:intergenic | 35.0% |
!! | TCAGTTTTTCAGAACCCTTT+AGG | + | chr2.3:70294440-70294459 | MS.gene047362:CDS | 35.0% |
!!! | TTTTTAGAACGTGCCTATGA+AGG | - | chr2.3:70297304-70297323 | None:intergenic | 35.0% |
AAACTCCTTACCAGAGATGA+TGG | - | chr2.3:70296659-70296678 | None:intergenic | 40.0% | |
AAAGCTGTAACAGTGTCTGA+GGG | + | chr2.3:70294416-70294435 | MS.gene047362:CDS | 40.0% | |
AACGCGAGAAAAATCAAGGT+TGG | - | chr2.3:70296398-70296417 | None:intergenic | 40.0% | |
AAGAGAAGACAGTGTTCAGA+TGG | + | chr2.3:70297829-70297848 | MS.gene047362:CDS | 40.0% | |
AATGGTTACAAGGTGCAGAA+TGG | - | chr2.3:70297341-70297360 | None:intergenic | 40.0% | |
AGAGTCCATAATTCTGGTGT+GGG | - | chr2.3:70294551-70294570 | None:intergenic | 40.0% | |
AGCACTTTAGACAAAGTCCT+TGG | - | chr2.3:70296505-70296524 | None:intergenic | 40.0% | |
AGCCAGAATAAAGTTCTGTG+TGG | + | chr2.3:70295030-70295049 | MS.gene047362:intron | 40.0% | |
AGTAGTCAAAGATCCACTAC+CGG | - | chr2.3:70294675-70294694 | None:intergenic | 40.0% | |
ATAGTCCATCATCTCTGGTA+AGG | + | chr2.3:70296651-70296670 | MS.gene047362:intron | 40.0% | |
ATCTCTGGTAAGGAGTTTAC+TGG | + | chr2.3:70296661-70296680 | MS.gene047362:intron | 40.0% | |
CAATCCTACTTCTTCTGTCA+TGG | + | chr2.3:70297867-70297886 | MS.gene047362:CDS | 40.0% | |
CAATCTCTATTTCCTCTTCC+TGG | - | chr2.3:70294783-70294802 | None:intergenic | 40.0% | |
CCCACTATTGATACCTTGTA+AGG | + | chr2.3:70296929-70296948 | MS.gene047362:intron | 40.0% | |
CGTTGTACTTGTTCGATACA+TGG | - | chr2.3:70295785-70295804 | None:intergenic | 40.0% | |
CTGAAACGCGAGAAAAATCA+AGG | - | chr2.3:70296402-70296421 | None:intergenic | 40.0% | |
CTTTGACTACTTCACTTGCT+AGG | + | chr2.3:70294684-70294703 | MS.gene047362:CDS | 40.0% | |
GAATAGAATATGGGAATCGG+GGG | - | chr2.3:70297625-70297644 | None:intergenic | 40.0% | |
GAGGACGACATGATCATTTA+TGG | - | chr2.3:70296452-70296471 | None:intergenic | 40.0% | |
GATTGCTGTCACGAATTGTT+CGG | - | chr2.3:70294364-70294383 | None:intergenic | 40.0% | |
GCACTTTAGACAAAGTCCTT+GGG | - | chr2.3:70296504-70296523 | None:intergenic | 40.0% | |
GGACTCTAGTGTTAAATCAC+AGG | + | chr2.3:70294564-70294583 | MS.gene047362:CDS | 40.0% | |
GTACGAGAGGATTTCAAATC+TGG | - | chr2.3:70297108-70297127 | None:intergenic | 40.0% | |
GTCCACACAGAACTTTATTC+TGG | - | chr2.3:70295035-70295054 | None:intergenic | 40.0% | |
GTGAAGACGAAAAGCTTTCA+TGG | + | chr2.3:70297781-70297800 | MS.gene047362:CDS | 40.0% | |
GTGCCAACAATTTCTGTGTT+GGG | - | chr2.3:70295061-70295080 | None:intergenic | 40.0% | |
TAGAGTCCATAATTCTGGTG+TGG | - | chr2.3:70294552-70294571 | None:intergenic | 40.0% | |
TAGCCCAACACAGAAATTGT+TGG | + | chr2.3:70295055-70295074 | MS.gene047362:intron | 40.0% | |
TATGGCCATGTATCCTTCAT+AGG | + | chr2.3:70297288-70297307 | MS.gene047362:intron | 40.0% | |
TCCAAGGATCGATTAATCCA+GGG | + | chr2.3:70294969-70294988 | MS.gene047362:intron | 40.0% | |
TCCATTGAAGAATCTAGTGC+GGG | - | chr2.3:70296474-70296493 | None:intergenic | 40.0% | |
TCCTGATGAGTTTAATGGCT+TGG | + | chr2.3:70295664-70295683 | MS.gene047362:CDS | 40.0% | |
TCTCTGGTAAGGAGTTTACT+GGG | + | chr2.3:70296662-70296681 | MS.gene047362:intron | 40.0% | |
TTCAATGGAACTGTTTCCCA+AGG | + | chr2.3:70296485-70296504 | MS.gene047362:intron | 40.0% | |
TTCTAACACTGGTATCATCC+AGG | - | chr2.3:70297400-70297419 | None:intergenic | 40.0% | |
! | AAGGTTGGTTGAGAGAGAAT+AGG | - | chr2.3:70296383-70296402 | None:intergenic | 40.0% |
! | ACTGAAAATAACTGCCGACT+AGG | + | chr2.3:70296346-70296365 | MS.gene047362:intron | 40.0% |
! | CCCTTACAAGGTATCAATAG+TGG | - | chr2.3:70296933-70296952 | None:intergenic | 40.0% |
! | CTCCTGATTTTCCTTCTGTA+TGG | + | chr2.3:70297270-70297289 | MS.gene047362:intron | 40.0% |
! | GTCCAAACTGATTCTAACAC+TGG | - | chr2.3:70297411-70297430 | None:intergenic | 40.0% |
! | TTAAGCATTTTCGCAGCTGA+AGG | - | chr2.3:70295734-70295753 | None:intergenic | 40.0% |
! | TTGGTTCTTGAATCTGGAAC+CGG | + | chr2.3:70294653-70294672 | MS.gene047362:CDS | 40.0% |
!! | AGGGACGATTTTGAGAGAAT+AGG | + | chr2.3:70295590-70295609 | MS.gene047362:intron | 40.0% |
!! | GATTGGATTGGAAAGCCTTT+TGG | + | chr2.3:70294479-70294498 | MS.gene047362:CDS | 40.0% |
!! | TTCACAAGGGTTCTGAAGTA+TGG | + | chr2.3:70296840-70296859 | MS.gene047362:intron | 40.0% |
!!! | GCGGGCAGTTTTTTTTTCTT+CGG | - | chr2.3:70297570-70297589 | None:intergenic | 40.0% |
!!! | GGGGGATATCTGGTTTTTTT+GGG | - | chr2.3:70297607-70297626 | None:intergenic | 40.0% |
AACTAACAGAACTGCGACGT+GGG | - | chr2.3:70296544-70296563 | None:intergenic | 45.0% | |
AATCTGGCCCCAAACAGAAA+TGG | - | chr2.3:70297092-70297111 | None:intergenic | 45.0% | |
ACACAGAAATTGTTGGCACC+TGG | + | chr2.3:70295062-70295081 | MS.gene047362:intron | 45.0% | |
ACAGAAATTGTTGGCACCTG+GGG | + | chr2.3:70295064-70295083 | MS.gene047362:intron | 45.0% | |
ACGTGCCTATGAAGGATACA+TGG | - | chr2.3:70297296-70297315 | None:intergenic | 45.0% | |
AGCTTTCATGGAGATGACAG+TGG | + | chr2.3:70297793-70297812 | MS.gene047362:CDS | 45.0% | |
AGGATACATGGCCATACAGA+AGG | - | chr2.3:70297284-70297303 | None:intergenic | 45.0% | |
AGGCTCTCTTAACTCCTAGT+CGG | - | chr2.3:70296363-70296382 | None:intergenic | 45.0% | |
ATAAGCTGGACCACTCGTAA+GGG | - | chr2.3:70296761-70296780 | None:intergenic | 45.0% | |
ATTGAAGAATCTAGTGCGGG+AGG | - | chr2.3:70296471-70296490 | None:intergenic | 45.0% | |
CAAGGGACTGAAGGATGTAA+TGG | - | chr2.3:70296707-70296726 | None:intergenic | 45.0% | |
CACAGAAATTGTTGGCACCT+GGG | + | chr2.3:70295063-70295082 | MS.gene047362:intron | 45.0% | |
CAGAAGGATTGAGGAATTGC+TGG | - | chr2.3:70297214-70297233 | None:intergenic | 45.0% | |
CATCTGCTAGGTAACAAACC+AGG | + | chr2.3:70294762-70294781 | MS.gene047362:intron | 45.0% | |
CTACGAGTATGCTCTTCTCT+AGG | - | chr2.3:70295104-70295123 | None:intergenic | 45.0% | |
CTAGCCATGACAGAAGAAGT+AGG | - | chr2.3:70297874-70297893 | None:intergenic | 45.0% | |
CTAGGTAACAAACCAGGAAG+AGG | + | chr2.3:70294768-70294787 | MS.gene047362:intron | 45.0% | |
GAAAGCTGTAACAGTGTCTG+AGG | + | chr2.3:70294415-70294434 | MS.gene047362:CDS | 45.0% | |
GAACACTGTCTTCTCTTGCA+AGG | - | chr2.3:70297826-70297845 | None:intergenic | 45.0% | |
GAACTCCTTACGTGTGACTA+AGG | - | chr2.3:70295406-70295425 | None:intergenic | 45.0% | |
GAATTGCTGGAAACAGTCAG+AGG | - | chr2.3:70297201-70297220 | None:intergenic | 45.0% | |
GATTCAAGAACCAAGCAACC+AGG | - | chr2.3:70294647-70294666 | None:intergenic | 45.0% | |
GCAGCAATCGTACGAAGATT+TGG | - | chr2.3:70296871-70296890 | None:intergenic | 45.0% | |
GCCAAGCCATTAAACTCATC+AGG | - | chr2.3:70295668-70295687 | None:intergenic | 45.0% | |
GGCCATACAGAAGGAAAATC+AGG | - | chr2.3:70297275-70297294 | None:intergenic | 45.0% | |
GGTGCCAACAATTTCTGTGT+TGG | - | chr2.3:70295062-70295081 | None:intergenic | 45.0% | |
GTCCAAGGATCGATTAATCC+AGG | + | chr2.3:70294968-70294987 | MS.gene047362:intron | 45.0% | |
GTTTGGTTGGACAAGTAGAG+TGG | - | chr2.3:70297031-70297050 | None:intergenic | 45.0% | |
TAAGATTGCCATGGAAGGCA+AGG | - | chr2.3:70296956-70296975 | None:intergenic | 45.0% | |
TAGCTCCCACACCAGAATTA+TGG | + | chr2.3:70294543-70294562 | MS.gene047362:CDS | 45.0% | |
TATAAGCTGGACCACTCGTA+AGG | - | chr2.3:70296762-70296781 | None:intergenic | 45.0% | |
TCCCGCACTAGATTCTTCAA+TGG | + | chr2.3:70296470-70296489 | MS.gene047362:intron | 45.0% | |
TCCCTGGATTAATCGATCCT+TGG | - | chr2.3:70294973-70294992 | None:intergenic | 45.0% | |
TCGCAGTTCTGTTAGTTGGA+TGG | + | chr2.3:70296547-70296566 | MS.gene047362:intron | 45.0% | |
TCTCAAACAAAAGGGGACTG+TGG | - | chr2.3:70296809-70296828 | None:intergenic | 45.0% | |
TGTGGAGTTAGGGACATTCA+GGG | + | chr2.3:70295632-70295651 | MS.gene047362:CDS | 45.0% | |
TTGGGCTCTCTAACTCTTAG+CGG | - | chr2.3:70297589-70297608 | None:intergenic | 45.0% | |
TTGTGGAGTTAGGGACATTC+AGG | + | chr2.3:70295631-70295650 | MS.gene047362:CDS | 45.0% | |
TTTGATGGAGAGGATGCGTT+TGG | - | chr2.3:70297048-70297067 | None:intergenic | 45.0% | |
! | CATTTTCGCAGCTGAAGGAA+TGG | - | chr2.3:70295729-70295748 | None:intergenic | 45.0% |
! | CCTGCTTCACAGGTACTTTT+AGG | + | chr2.3:70295825-70295844 | MS.gene047362:intron | 45.0% |
! | CTAGAGAAGAGCATACTCGT+AGG | + | chr2.3:70295102-70295121 | MS.gene047362:intron | 45.0% |
! | GGTTGCTTGGTTCTTGAATC+TGG | + | chr2.3:70294647-70294666 | MS.gene047362:CDS | 45.0% |
! | TAGCGGCTTGAATTTTCTCG+TGG | + | chr2.3:70296974-70296993 | MS.gene047362:intron | 45.0% |
! | TTTTGGATCTGCCTCAACCT+TGG | + | chr2.3:70295699-70295718 | MS.gene047362:CDS | 45.0% |
!! | CAAGGGTTCTGAAGTATGGA+CGG | + | chr2.3:70296844-70296863 | MS.gene047362:intron | 45.0% |
!! | CCTAAAAGTACCTGTGAAGC+AGG | - | chr2.3:70295828-70295847 | None:intergenic | 45.0% |
!! | GTCCCCTTTTGTTTGAGACT+TGG | + | chr2.3:70296811-70296830 | MS.gene047362:intron | 45.0% |
!!! | CGGGGGATATCTGGTTTTTT+TGG | - | chr2.3:70297608-70297627 | None:intergenic | 45.0% |
AACAAAGGGCAGCATCTGCT+AGG | + | chr2.3:70294750-70294769 | MS.gene047362:CDS | 50.0% | |
AGACCTTGTGATGAGGCTAG+AGG | + | chr2.3:70297892-70297911 | MS.gene047362:CDS | 50.0% | |
AGTTAGGGACATTCAGGGTG+AGG | + | chr2.3:70295637-70295656 | MS.gene047362:CDS | 50.0% | |
ATGGAGAGGATGCGTTTGGT+TGG | - | chr2.3:70297044-70297063 | None:intergenic | 50.0% | |
CAAACAAAAGGGGACTGTGG+AGG | - | chr2.3:70296806-70296825 | None:intergenic | 50.0% | |
CAACTAACAGAACTGCGACG+TGG | - | chr2.3:70296545-70296564 | None:intergenic | 50.0% | |
CAATTGGGTCCGACTACTAG+CGG | - | chr2.3:70295009-70295028 | None:intergenic | 50.0% | |
CACGTCGCAGTTCTGTTAGT+TGG | + | chr2.3:70296543-70296562 | MS.gene047362:intron | 50.0% | |
CAGATGCTGCCCTTTGTTCA+TGG | - | chr2.3:70294748-70294767 | None:intergenic | 50.0% | |
CATGGCTAGACCTTGTGATG+AGG | + | chr2.3:70297885-70297904 | MS.gene047362:CDS | 50.0% | |
CTACACGGTGTAGTCAACAG+TGG | - | chr2.3:70295216-70295235 | None:intergenic | 50.0% | |
GCCTTCCATGGCAATCTTAG+CGG | + | chr2.3:70296957-70296976 | MS.gene047362:intron | 50.0% | |
GCTGAAGGAATGGCTAACCA+AGG | - | chr2.3:70295719-70295738 | None:intergenic | 50.0% | |
GGAATGGCTAACCAAGGTTG+AGG | - | chr2.3:70295713-70295732 | None:intergenic | 50.0% | |
GGAGATTGTTCCTGGTTGCT+TGG | + | chr2.3:70294634-70294653 | MS.gene047362:CDS | 50.0% | |
GGAGTTGCGACAACTTCTAG+AGG | - | chr2.3:70297254-70297273 | None:intergenic | 50.0% | |
GGGACTGAAGGATGTAATGG+AGG | - | chr2.3:70296704-70296723 | None:intergenic | 50.0% | |
GTTAGGGACATTCAGGGTGA+GGG | + | chr2.3:70295638-70295657 | MS.gene047362:CDS | 50.0% | |
TATGGGAATCGGGGGATATC+TGG | - | chr2.3:70297617-70297636 | None:intergenic | 50.0% | |
TCAAGCCGCTAAGATTGCCA+TGG | - | chr2.3:70296965-70296984 | None:intergenic | 50.0% | |
TGACCTCTAGCCTCATCACA+AGG | - | chr2.3:70297898-70297917 | None:intergenic | 50.0% | |
TGGGCATAGTCCATCATCTC+TGG | + | chr2.3:70296646-70296665 | MS.gene047362:intron | 50.0% | |
TGGGCTCTCTAACTCTTAGC+GGG | - | chr2.3:70297588-70297607 | None:intergenic | 50.0% | |
! | CTTGAATCTGGAACCGGTAG+TGG | + | chr2.3:70294659-70294678 | MS.gene047362:CDS | 50.0% |
AAGCCAACTCCTAGGGCCAT+GGG | + | chr2.3:70295143-70295162 | MS.gene047362:intron | 55.0% | |
ACACCACCAAGCCAACTCCT+AGG | + | chr2.3:70295135-70295154 | MS.gene047362:intron | 55.0% | |
CACCACCAAGCCAACTCCTA+GGG | + | chr2.3:70295136-70295155 | MS.gene047362:intron | 55.0% | |
CTACGCTGTAGCGTAACCCA+TGG | - | chr2.3:70295162-70295181 | None:intergenic | 55.0% | |
GATGAGGCTAGAGGTCACAC+AGG | + | chr2.3:70297901-70297920 | MS.gene047362:CDS | 55.0% | |
GCACTTCAGTCCTGCTTCAC+AGG | + | chr2.3:70295815-70295834 | MS.gene047362:CDS | 55.0% | |
GCCGCTAAGATTGCCATGGA+AGG | - | chr2.3:70296961-70296980 | None:intergenic | 55.0% | |
GCTGGAAACAGTCAGAGGCA+TGG | - | chr2.3:70297196-70297215 | None:intergenic | 55.0% | |
GGTCTCAGTTTCGAATCCCC+AGG | - | chr2.3:70295083-70295102 | None:intergenic | 55.0% | |
TAACCCATGGCCCTAGGAGT+TGG | - | chr2.3:70295149-70295168 | None:intergenic | 55.0% | |
TCTCGTTCAGCCCTTACGAG+TGG | + | chr2.3:70296748-70296767 | MS.gene047362:intron | 55.0% | |
TGGAAGGCAAGGCCCTTACA+AGG | - | chr2.3:70296945-70296964 | None:intergenic | 55.0% | |
TGTAAGGGCCTTGCCTTCCA+TGG | + | chr2.3:70296945-70296964 | MS.gene047362:intron | 55.0% | |
! | AGATGGCAAGAGCGTACGAG+AGG | - | chr2.3:70297121-70297140 | None:intergenic | 55.0% |
!! | AGGAGTTGGCTTGGTGGTGT+AGG | - | chr2.3:70295135-70295154 | None:intergenic | 55.0% |
CAAGCCAACTCCTAGGGCCA+TGG | + | chr2.3:70295142-70295161 | MS.gene047362:intron | 60.0% | |
CATGGCCCTAGGAGTTGGCT+TGG | - | chr2.3:70295144-70295163 | None:intergenic | 60.0% | |
GCTAGGGCAGTTGCGCCAAA+CGG | + | chr2.3:70294701-70294720 | MS.gene047362:CDS | 60.0% | |
GTAGCGTAACCCATGGCCCT+AGG | - | chr2.3:70295155-70295174 | None:intergenic | 60.0% | |
TCCCACCGTCCGCTAGTAGT+CGG | + | chr2.3:70294997-70295016 | MS.gene047362:intron | 60.0% | |
TGGGTCCGACTACTAGCGGA+CGG | - | chr2.3:70295005-70295024 | None:intergenic | 60.0% | |
! | CTACTAGCGGACGGTGGGAT+TGG | - | chr2.3:70294996-70295015 | None:intergenic | 60.0% |
! | TCCGACTACTAGCGGACGGT+GGG | - | chr2.3:70295001-70295020 | None:intergenic | 60.0% |
! | GTCCGACTACTAGCGGACGG+TGG | - | chr2.3:70295002-70295021 | None:intergenic | 65.0% |
!! | GGCCCTAGGAGTTGGCTTGG+TGG | - | chr2.3:70295141-70295160 | None:intergenic | 65.0% |
!! | CGGACGGTGGGATTGGTCCC+TGG | - | chr2.3:70294989-70295008 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 70294323 | 70297960 | 70294323 | ID=MS.gene047362 |
chr2.3 | mRNA | 70294323 | 70297960 | 70294323 | ID=MS.gene047362.t1;Parent=MS.gene047362 |
chr2.3 | exon | 70294323 | 70294771 | 70294323 | ID=MS.gene047362.t1.exon1;Parent=MS.gene047362.t1 |
chr2.3 | CDS | 70294323 | 70294771 | 70294323 | ID=cds.MS.gene047362.t1;Parent=MS.gene047362.t1 |
chr2.3 | exon | 70295592 | 70295836 | 70295592 | ID=MS.gene047362.t1.exon2;Parent=MS.gene047362.t1 |
chr2.3 | CDS | 70295592 | 70295836 | 70295592 | ID=cds.MS.gene047362.t1;Parent=MS.gene047362.t1 |
chr2.3 | exon | 70297734 | 70297960 | 70297734 | ID=MS.gene047362.t1.exon3;Parent=MS.gene047362.t1 |
chr2.3 | CDS | 70297734 | 70297960 | 70297734 | ID=cds.MS.gene047362.t1;Parent=MS.gene047362.t1 |
Gene Sequence |
Protein sequence |