AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048078

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048078.t1 MTR_2g081980 73.776 572 136 6 4 573 2 561 0.0 862
MS.gene048078.t1 MTR_4g019550 76.592 581 96 6 5 569 2 558 0.0 860
MS.gene048078.t1 MTR_2g082060 72.281 570 142 5 6 573 2 557 0.0 843
MS.gene048078.t1 MTR_2g082010 68.696 575 175 4 1 573 1 572 0.0 816
MS.gene048078.t1 MTR_8g007515 68.468 555 172 3 20 573 8 560 0.0 790
MS.gene048078.t1 MTR_2g082050 64.078 515 128 4 54 568 1 458 0.0 662
MS.gene048078.t1 MTR_4g081460 43.937 569 301 10 5 569 8 562 1.83e-168 490
MS.gene048078.t1 MTR_6g008560 42.370 557 311 8 16 569 8 557 2.29e-158 464
MS.gene048078.t1 MTR_5g062230 43.116 552 302 10 22 569 10 553 1.21e-156 460
MS.gene048078.t1 MTR_3g464190 42.727 550 307 7 22 569 14 557 3.03e-153 451
MS.gene048078.t1 MTR_6g039440 41.198 551 314 9 22 569 10 553 4.09e-152 448
MS.gene048078.t1 MTR_4g048460 42.266 556 306 10 19 569 16 561 4.59e-150 443
MS.gene048078.t1 MTR_5g073200 41.304 552 312 8 22 569 6 549 1.57e-149 441
MS.gene048078.t1 MTR_5g073260 41.802 555 312 9 19 569 5 552 3.77e-149 441
MS.gene048078.t1 MTR_5g094620 41.455 550 294 8 22 569 14 537 1.97e-142 423
MS.gene048078.t1 MTR_4g048460 43.805 452 243 7 19 467 16 459 3.03e-129 387
MS.gene048078.t1 MTR_6g008560 42.611 406 226 6 166 569 1 401 3.99e-111 338
MS.gene048078.t1 MTR_4g045810 35.921 554 329 11 24 568 44 580 1.28e-99 314
MS.gene048078.t1 MTR_2g064425 34.249 546 342 9 25 567 53 584 3.14e-98 310
MS.gene048078.t1 MTR_8g057020 33.871 558 330 11 24 567 55 587 7.90e-94 299
MS.gene048078.t1 MTR_2g065450 34.552 547 342 8 23 567 56 588 3.01e-92 295
MS.gene048078.t1 MTR_2g064425 32.967 546 334 11 25 567 53 569 1.48e-89 288
MS.gene048078.t1 MTR_2g089120 34.747 495 302 10 61 550 70 548 3.27e-86 278
MS.gene048078.t1 MTR_7g010710 30.965 549 359 8 25 566 17 552 2.33e-82 268
MS.gene048078.t1 MTR_2g089130 34.064 502 312 9 52 550 62 547 2.63e-82 268
MS.gene048078.t1 MTR_2g064425 38.551 345 202 4 25 369 53 387 1.25e-75 247
MS.gene048078.t1 MTR_4g092020 32.613 509 307 10 56 550 67 553 3.79e-74 247
MS.gene048078.t1 MTR_2g064425 36.522 345 194 6 25 369 53 372 4.52e-67 224
MS.gene048078.t1 MTR_4g092010 30.123 488 322 8 63 542 60 536 2.35e-66 226
MS.gene048078.t1 MTR_2g010960 29.600 500 331 8 56 542 7 498 1.25e-64 220
MS.gene048078.t1 MTR_3g465090 28.270 474 316 8 82 542 31 493 7.04e-57 199
MS.gene048078.t1 MTR_3g063120 28.662 471 319 10 82 542 6 469 1.87e-55 195
MS.gene048078.t1 MTR_3g063170 27.677 495 342 7 56 542 7 493 3.11e-55 195
MS.gene048078.t1 MTR_3g063140 27.510 498 339 9 56 542 7 493 1.82e-54 193
MS.gene048078.t1 MTR_3g052120 27.677 495 342 7 56 542 7 493 1.87e-53 190
MS.gene048078.t1 MTR_6g064980 27.292 469 327 6 82 542 31 493 1.56e-52 187
MS.gene048078.t1 MTR_5g094530 41.121 214 89 3 177 389 2 179 4.39e-45 158
MS.gene048078.t1 MTR_6g065040 26.904 394 278 6 155 542 2 391 8.43e-41 152
MS.gene048078.t1 MTR_7g050990 44.295 149 74 1 213 361 28 167 5.31e-37 147
MS.gene048078.t1 MTR_3g058160 27.392 533 323 21 75 567 61 569 6.13e-35 139
MS.gene048078.t1 MTR_3g058160 27.392 533 323 21 75 567 265 773 2.07e-34 139
MS.gene048078.t1 MTR_3g058160 27.392 533 323 21 75 567 252 760 2.18e-34 139
MS.gene048078.t1 MTR_3g058160 27.392 533 323 21 75 567 272 780 2.22e-34 139
MS.gene048078.t1 MTR_2g064295 26.629 537 330 19 75 571 252 764 5.45e-34 137
MS.gene048078.t1 MTR_2g012870 23.902 569 387 14 31 572 211 760 8.37e-32 131
MS.gene048078.t1 MTR_3g058160 26.715 554 321 23 75 567 272 801 7.37e-31 128
MS.gene048078.t1 MTR_7g057340 35.838 173 108 3 399 569 1 172 1.05e-30 118
MS.gene048078.t1 MTR_3g063160 28.819 288 195 4 56 340 7 287 1.29e-30 121
MS.gene048078.t1 MTR_2g012900 23.744 577 392 15 31 572 211 774 3.24e-28 120
MS.gene048078.t1 MTR_7g057390 33.526 173 109 4 399 569 1 169 9.90e-27 107
MS.gene048078.t1 MTR_7g094970 27.660 282 166 7 75 326 204 477 4.23e-25 110
MS.gene048078.t1 MTR_5g030050 28.030 264 159 6 83 325 4 257 4.46e-24 103
MS.gene048078.t1 MTR_7g011770 31.050 219 128 4 83 278 246 464 1.01e-23 106
MS.gene048078.t1 MTR_7g011663 26.821 302 191 7 30 308 303 597 4.70e-23 104
MS.gene048078.t1 MTR_8g073530 31.206 141 77 3 144 264 35 175 5.79e-13 70.1
MS.gene048078.t1 MTR_5g081730 41.414 99 55 1 172 270 16 111 2.16e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048078.t1 AT5G23960 37.341 549 336 5 22 569 4 545 2.32e-134 402
MS.gene048078.t1 AT5G23960 37.138 552 335 7 22 569 4 547 2.35e-132 397
MS.gene048078.t1 AT3G14490 33.636 550 352 7 25 569 60 601 2.75e-105 329
MS.gene048078.t1 AT1G70080 34.926 544 343 10 32 569 73 611 3.61e-104 327
MS.gene048078.t1 AT3G14520 34.357 521 333 6 25 542 63 577 1.19e-99 315
MS.gene048078.t1 AT5G44630 33.638 547 343 10 33 569 21 557 1.74e-98 310
MS.gene048078.t1 AT3G14540 33.714 525 331 8 25 542 60 574 4.06e-97 308
MS.gene048078.t1 AT1G33750 33.090 547 355 8 25 569 66 603 7.16e-97 307
MS.gene048078.t1 AT1G31950 32.392 531 343 7 26 553 66 583 2.85e-94 301
MS.gene048078.t1 AT3G29410 32.117 548 361 7 25 569 64 603 5.07e-94 300
MS.gene048078.t1 AT1G31950 32.458 533 341 8 26 553 66 584 1.48e-93 299
MS.gene048078.t1 AT3G32030 31.636 550 363 9 25 569 63 604 2.93e-92 295
MS.gene048078.t1 AT4G13300 32.781 543 353 8 30 567 17 552 6.79e-90 288
MS.gene048078.t1 AT4G20210 31.904 583 375 12 1 569 26 600 1.05e-89 288
MS.gene048078.t1 AT4G15870 33.096 562 345 12 18 569 58 598 5.49e-89 286
MS.gene048078.t1 AT3G14540 33.480 454 294 5 25 476 60 507 2.05e-86 277
MS.gene048078.t1 AT4G16730 31.862 521 337 9 60 569 26 539 2.52e-86 278
MS.gene048078.t1 AT3G29410 31.944 504 335 5 68 569 1 498 9.71e-86 275
MS.gene048078.t1 AT4G20230 33.466 502 322 8 51 546 98 593 1.62e-84 275
MS.gene048078.t1 AT4G20230 33.466 502 322 8 51 546 86 581 1.83e-84 275
MS.gene048078.t1 AT4G16740 32.240 549 342 13 23 562 24 551 8.02e-84 272
MS.gene048078.t1 AT4G16730 31.727 498 323 8 83 569 2 493 8.95e-84 270
MS.gene048078.t1 AT2G24210 31.469 572 344 15 23 570 44 591 5.04e-83 271
MS.gene048078.t1 AT3G25830 30.796 578 345 12 22 570 44 595 3.13e-82 269
MS.gene048078.t1 AT3G25820 30.796 578 345 12 22 570 44 595 3.13e-82 269
MS.gene048078.t1 AT4G13280 32.778 540 351 8 35 569 22 554 3.66e-82 268
MS.gene048078.t1 AT1G31950 32.373 451 294 6 26 472 66 509 1.40e-81 265
MS.gene048078.t1 AT3G29190 32.463 536 346 10 40 569 76 601 3.95e-80 263
MS.gene048078.t1 AT4G20200 30.857 525 351 9 51 569 86 604 3.01e-79 261
MS.gene048078.t1 AT1G48800 31.560 545 354 12 30 565 68 602 1.48e-78 259
MS.gene048078.t1 AT3G25810 29.982 567 367 10 22 570 44 598 1.58e-78 259
MS.gene048078.t1 AT1G66020 31.429 525 348 9 51 569 80 598 2.99e-77 256
MS.gene048078.t1 AT3G29110 31.725 539 353 10 25 556 55 585 1.15e-76 254
MS.gene048078.t1 AT1G61680 33.861 505 307 10 65 556 76 566 2.18e-75 250
MS.gene048078.t1 AT2G23230 31.429 560 349 13 9 550 38 580 4.29e-74 248
MS.gene048078.t1 AT2G23230 31.475 556 349 13 9 550 38 575 3.98e-73 245
MS.gene048078.t1 AT1G61680 33.663 505 301 11 65 556 76 559 5.17e-73 244
MS.gene048078.t1 AT4G13280 31.540 539 329 9 35 569 22 524 7.29e-72 239
MS.gene048078.t1 AT1G48820 29.255 564 340 15 12 565 46 560 2.50e-66 226
MS.gene048078.t1 AT4G16740 35.838 346 203 8 23 360 24 358 3.01e-63 213
MS.gene048078.t1 AT3G25820 31.863 408 235 6 22 409 44 428 4.01e-63 214
MS.gene048078.t1 AT5G48110 33.236 343 222 7 229 569 2 339 2.19e-60 204
MS.gene048078.t1 AT1G66020 34.132 334 212 5 51 380 80 409 4.53e-57 197
MS.gene048078.t1 AT4G16740 35.802 324 189 8 23 338 24 336 9.94e-57 195
MS.gene048078.t1 AT4G16740 35.802 324 189 8 23 338 24 336 9.94e-57 195
MS.gene048078.t1 AT3G25820 32.938 337 184 5 22 338 44 358 6.04e-54 188
MS.gene048078.t1 AT3G25820 32.938 337 184 5 22 338 44 358 6.04e-54 188
MS.gene048078.t1 AT4G02780 29.032 310 184 8 30 313 288 587 4.95e-27 116
MS.gene048078.t1 AT1G61120 25.285 526 332 20 79 569 285 784 5.25e-26 113
MS.gene048078.t1 AT1G79460 22.736 541 345 18 75 571 270 781 4.53e-20 95.1

Find 83 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAAAAGAACTTTATTA+TGG 0.170794 4.4:-81945012 None:intergenic
TGTATGAAGCTACACAATTA+AGG 0.214055 4.4:+81944795 MS.gene048078:CDS
TCACATTTCTCGATGGTTAT+AGG 0.220163 4.4:-81947939 None:intergenic
TAAAAGAGATCGAAGATTAT+TGG 0.221436 4.4:+81947751 MS.gene048078:CDS
CCACATTCCTTGTACATCTT+TGG 0.223894 4.4:-81944768 None:intergenic
AATACAACTTTCATGCATTC+TGG 0.250900 4.4:-81946866 None:intergenic
AATAGCACTGCGAGAAAGTT+AGG 0.282911 4.4:+81945333 MS.gene048078:CDS
TTTCTCGCAGTGCTATTTCT+AGG 0.284014 4.4:-81945327 None:intergenic
CAAACAAAGAGTTGCTTGAT+TGG 0.297444 4.4:+81947219 MS.gene048078:CDS
CATTGACTCAATGCAACGTT+TGG 0.300386 4.4:+81944234 MS.gene048078:CDS
TTTCGTTTGCTTAGGCAAAA+AGG 0.303378 4.4:+81944376 MS.gene048078:CDS
CAAAACAATTACTCAAAATA+AGG 0.306378 4.4:+81944309 MS.gene048078:CDS
CTTCTTGTGAAATATCATAT+TGG 0.331815 4.4:-81947710 None:intergenic
GATGATACTTATGATGCCTT+TGG 0.380041 4.4:+81945387 MS.gene048078:CDS
TTGAGGATAAATACACAAAT+GGG 0.381090 4.4:+81947877 MS.gene048078:CDS
ATTCAAAAGAACTTTATTAT+GGG 0.383453 4.4:-81945011 None:intergenic
CTTGGACTAAAATTTACATT+TGG 0.393878 4.4:-81943842 None:intergenic
AGTTGAATGAACTGGTGGTT+TGG 0.398521 4.4:-81943792 None:intergenic
TATGATGCATACAAGGCTAA+TGG 0.407551 4.4:+81947137 MS.gene048078:CDS
ATTGATCATCACTAATCAAT+TGG 0.410697 4.4:+81944877 MS.gene048078:CDS
TTTGAGGATAAATACACAAA+TGG 0.411324 4.4:+81947876 MS.gene048078:CDS
TAGTGATGATCAATGAATTA+AGG 0.419244 4.4:-81944868 None:intergenic
GTTGAATGAACTGGTGGTTT+GGG 0.423512 4.4:-81943791 None:intergenic
GTATGAAGCTACACAATTAA+GGG 0.430676 4.4:+81944796 MS.gene048078:CDS
GATGTAGCATTGATGATTGT+TGG 0.434567 4.4:-81947254 None:intergenic
ATGTAGCATTGATGATTGTT+GGG 0.442702 4.4:-81947253 None:intergenic
CATTTGGTCGCTTGATGTCA+TGG 0.454834 4.4:-81943826 None:intergenic
ATTGACTCAATGCAACGTTT+GGG 0.455126 4.4:+81944235 MS.gene048078:CDS
GAGTCGTTGAGGCCTACTTT+TGG 0.456023 4.4:+81945283 MS.gene048078:CDS
TAAATTGGCAAAATCCTACT+TGG 0.462157 4.4:+81947076 MS.gene048078:CDS
AAACTTTCGAGCACCGGACT+TGG 0.464107 4.4:-81947813 None:intergenic
CTAGGAACTCCCTTATGAAA+AGG 0.474060 4.4:-81944944 None:intergenic
TTGATTCACAGTCATATTGA+AGG 0.477927 4.4:-81943883 None:intergenic
CGTTAGTATTTCGTTTGCTT+AGG 0.481458 4.4:+81944368 MS.gene048078:CDS
GTTCACATACGAAAACTTTG+AGG 0.485870 4.4:+81947860 MS.gene048078:CDS
CGTATTTGTGTACCAAGAAA+AGG 0.493646 4.4:-81944905 None:intergenic
TCAATATGACTGTGAATCAA+TGG 0.493684 4.4:+81943886 MS.gene048078:CDS
GTTAGATTTCATCCCAAGTC+CGG 0.494523 4.4:+81947800 MS.gene048078:CDS
GAAGCAAAGTGGTGCAATGA+AGG 0.495069 4.4:+81947101 MS.gene048078:CDS
GAGACAACAATTGTAAAGAA+TGG 0.496644 4.4:+81946920 MS.gene048078:CDS
ACAAGTACAAATTCTAAAAG+AGG 0.499227 4.4:+81944156 MS.gene048078:CDS
AAAGGACATCACATTTCATC+AGG 0.504446 4.4:+81944394 MS.gene048078:CDS
GCCTTGTATGCATCATATGT+TGG 0.504545 4.4:-81947131 None:intergenic
CTCCTACTCACATTTCTCGA+TGG 0.506453 4.4:-81947946 None:intergenic
AAGGAAATAACCACAAAAGA+AGG 0.516368 4.4:+81944328 MS.gene048078:CDS
TTAATAAAACTTTCGAGCAC+CGG 0.516762 4.4:-81947819 None:intergenic
AACTTTCATGCATTCTGGAA+GGG 0.519268 4.4:-81946861 None:intergenic
TAACACCTTGTTTCCAACCT+AGG 0.519629 4.4:-81944962 None:intergenic
AAAAGAACTTTATTATGGGA+AGG 0.521157 4.4:-81945007 None:intergenic
ATATGATATTTCACAAGAAG+AGG 0.523221 4.4:+81947713 MS.gene048078:CDS
AGAAAAGATAACATTTGAAG+TGG 0.527581 4.4:-81947179 None:intergenic
TGATGACAAATCCTCACATA+AGG 0.530187 4.4:+81947295 MS.gene048078:CDS
AACTTTCGAGCACCGGACTT+GGG 0.532988 4.4:-81947812 None:intergenic
AAGTATCATCTAAAAGAGAA+AGG 0.538046 4.4:-81945374 None:intergenic
AAGTTCTTCAACTGTGCCAA+AGG 0.539484 4.4:-81945403 None:intergenic
CCACTTTGCTTCAACCAAGT+AGG 0.544143 4.4:-81947090 None:intergenic
GCATGTTGAGTTGAATGAAC+TGG 0.546209 4.4:-81943800 None:intergenic
ACGACTCTATCCCTTGCGTA+AGG 0.549303 4.4:-81945267 None:intergenic
TCCAACATATGATGCATACA+AGG 0.549417 4.4:+81947130 MS.gene048078:CDS
CATGGTCAATAGCCAAAAGT+AGG 0.553082 4.4:-81945295 None:intergenic
CAACTTTCATGCATTCTGGA+AGG 0.554139 4.4:-81946862 None:intergenic
TCATAAGGGAGTTCCTAGGT+TGG 0.561476 4.4:+81944949 MS.gene048078:CDS
ATAGCACTGCGAGAAAGTTA+GGG 0.563190 4.4:+81945334 MS.gene048078:CDS
CCAAAGATGTACAAGGAATG+TGG 0.571114 4.4:+81944768 MS.gene048078:CDS
GGACAAAAGTCCCTTACGCA+AGG 0.576924 4.4:+81945256 MS.gene048078:CDS
TCTTCACACAGGCATTCCAC+AGG 0.579071 4.4:+81945430 MS.gene048078:CDS
GAGTTCCTAGGTTGGAAACA+AGG 0.579480 4.4:+81944957 MS.gene048078:CDS
CGACTCTATCCCTTGCGTAA+GGG 0.598986 4.4:-81945266 None:intergenic
CGCAAGGGATAGAGTCGTTG+AGG 0.600535 4.4:+81945272 MS.gene048078:CDS
AAGCTTTCCAAAGATGTACA+AGG 0.600831 4.4:+81944761 MS.gene048078:CDS
AAATTTATGTACCTTATGTG+AGG 0.603277 4.4:-81947306 None:intergenic
CCTACTTGGTTGAAGCAAAG+TGG 0.615237 4.4:+81947090 MS.gene048078:CDS
TAGCATTGATGATTGTTGGG+TGG 0.625156 4.4:-81947250 None:intergenic
TTGGGATGAAATCTAACTTG+AGG 0.631458 4.4:-81947794 None:intergenic
GAAATAACCACAAAAGAAGG+TGG 0.632134 4.4:+81944331 MS.gene048078:CDS
AATGGGGAACTGTTGAAAGA+CGG 0.639931 4.4:+81947894 MS.gene048078:CDS
GACAAAAGTCCCTTACGCAA+GGG 0.644000 4.4:+81945257 MS.gene048078:CDS
TGTTGAGTTGAATGAACTGG+TGG 0.648626 4.4:-81943797 None:intergenic
ATACTAACGCATGAAAGTGA+AGG 0.651268 4.4:-81944354 None:intergenic
ATTTCTAGGCTCATAAGACA+TGG 0.660909 4.4:-81945313 None:intergenic
AACCATCGAGAAATGTGAGT+AGG 0.666462 4.4:+81947944 MS.gene048078:CDS
AGAACTTGAACTCTTCACAC+AGG 0.671001 4.4:+81945419 MS.gene048078:CDS
TGAGGATAAATACACAAATG+GGG 0.685483 4.4:+81947878 MS.gene048078:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAAAAAAAAAAAT+TGG + chr4.4:81944490-81944509 MS.gene048078:intron 0.0%
!! AAAAGTAAACAAAAATTATA+GGG - chr4.4:81946037-81946056 None:intergenic 10.0%
!! AATCAAAAAAAAAAAATTAC+AGG + chr4.4:81945963-81945982 MS.gene048078:intron 10.0%
!! AATCAAAAAAAAAAATTTAC+AGG - chr4.4:81945832-81945851 None:intergenic 10.0%
!! ACAAAAAGATAATTATATAT+TGG - chr4.4:81946809-81946828 None:intergenic 10.0%
!! ATCAAAAAAAAAAAATTACA+GGG + chr4.4:81945964-81945983 MS.gene048078:intron 10.0%
!! ATCAAAAAAAAAAATTTACA+GGG - chr4.4:81945831-81945850 None:intergenic 10.0%
!! TAATAATATAAAAGAATTGA+TGG - chr4.4:81946739-81946758 None:intergenic 10.0%
!! TTAGTTAACTTAAAAAAAAA+AGG - chr4.4:81945138-81945157 None:intergenic 10.0%
!! TTCTTGAAAAAAAATTAAAT+TGG - chr4.4:81945881-81945900 None:intergenic 10.0%
!!! AATAATATAGTTTTTTTTGA+AGG - chr4.4:81943938-81943957 None:intergenic 10.0%
!! AATTCAAAAGAACTTTATTA+TGG - chr4.4:81945015-81945034 None:intergenic 15.0%
!! ATTCAAAAGAACTTTATTAT+GGG - chr4.4:81945014-81945033 None:intergenic 15.0%
!! CCTTAGAAAATTAATAATTA+TGG + chr4.4:81944027-81944046 MS.gene048078:intron 15.0%
!! GAAAAGTAAACAAAAATTAT+AGG - chr4.4:81946038-81946057 None:intergenic 15.0%
!! TATTAGACTTATATTATTAC+AGG + chr4.4:81945211-81945230 MS.gene048078:intron 15.0%
!! TCAAAAAAAAAAAATTACAG+GGG + chr4.4:81945965-81945984 MS.gene048078:intron 15.0%
!! TCAAAAATATTTGATATGAA+GGG - chr4.4:81944542-81944561 None:intergenic 15.0%
!! TTCAAAAATATTTGATATGA+AGG - chr4.4:81944543-81944562 None:intergenic 15.0%
!! TTCATAATGTGATTAATTAA+CGG - chr4.4:81944624-81944643 None:intergenic 15.0%
!!! AAAACAATTTTTTTTACAAG+GGG + chr4.4:81945938-81945957 MS.gene048078:intron 15.0%
!!! AAATTAAATTGGTTTTTGTT+TGG - chr4.4:81945870-81945889 None:intergenic 15.0%
!!! AATATCTTATCATTTTGAAA+GGG + chr4.4:81944258-81944277 MS.gene048078:CDS 15.0%
!!! CAAAACAATTTTTTTTACAA+GGG + chr4.4:81945937-81945956 MS.gene048078:intron 15.0%
!!! CCATAATTATTAATTTTCTA+AGG - chr4.4:81944030-81944049 None:intergenic 15.0%
!!! TATTATAATTTTGGGTTAAT+AGG + chr4.4:81945767-81945786 MS.gene048078:intron 15.0%
!!! TCAAAACAATTTTTTTTACA+AGG + chr4.4:81945936-81945955 MS.gene048078:intron 15.0%
!!! TGATTTACAGTTTTATAAAT+TGG + chr4.4:81947061-81947080 MS.gene048078:intron 15.0%
!!! TTATTGTGTACTTTTTTTTA+GGG - chr4.4:81947478-81947497 None:intergenic 15.0%
!!! TTTATTGTGTACTTTTTTTT+AGG - chr4.4:81947479-81947498 None:intergenic 15.0%
!! AAAAAAAAAAAATTACAGGG+GGG + chr4.4:81945967-81945986 MS.gene048078:intron 20.0%
!! AAAAATATTTGATATGAAGG+GGG - chr4.4:81944540-81944559 None:intergenic 20.0%
!! AAAATTTACAGGGAAAAAAT+CGG - chr4.4:81945821-81945840 None:intergenic 20.0%
!! AAAGTATGCTTGTAAAAAAA+AGG + chr4.4:81946192-81946211 MS.gene048078:intron 20.0%
!! AATCACTATAAAATCTCATA+AGG + chr4.4:81944658-81944677 MS.gene048078:intron 20.0%
!! AGAAAAATCATAAATTCTTG+AGG - chr4.4:81947337-81947356 None:intergenic 20.0%
!! ATTGATAAGTTATGGAATAT+TGG - chr4.4:81946991-81947010 None:intergenic 20.0%
!! CAAAAAAAAAAAATTACAGG+GGG + chr4.4:81945966-81945985 MS.gene048078:intron 20.0%
!! CAAAAATATTTGATATGAAG+GGG - chr4.4:81944541-81944560 None:intergenic 20.0%
!! CAAAACAATTACTCAAAATA+AGG + chr4.4:81944309-81944328 MS.gene048078:CDS 20.0%
!! TAATAATAGTTTCCATTGAA+TGG - chr4.4:81944103-81944122 None:intergenic 20.0%
!! TTTGTGTAACTATTAAATTG+CGG + chr4.4:81945661-81945680 MS.gene048078:intron 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG + chr4.4:81945896-81945915 MS.gene048078:intron 20.0%
!!! ATTATCTTTTTGTTTGAATC+AGG + chr4.4:81946816-81946835 MS.gene048078:intron 20.0%
!!! GAATATCTTATCATTTTGAA+AGG + chr4.4:81944257-81944276 MS.gene048078:CDS 20.0%
!!! TAATACAATTTTAGAACTGT+GGG + chr4.4:81946889-81946908 MS.gene048078:CDS 20.0%
!!! TCTTTTGAATTTTGCAAAAT+TGG + chr4.4:81945024-81945043 MS.gene048078:CDS 20.0%
!!! TCTTTTTACAGACTATTTTA+TGG + chr4.4:81946660-81946679 MS.gene048078:intron 20.0%
!!! TTAATACAATTTTAGAACTG+TGG + chr4.4:81946888-81946907 MS.gene048078:CDS 20.0%
! AAAAGAACTTTATTATGGGA+AGG - chr4.4:81945010-81945029 None:intergenic 25.0%
! AAAATATTTGATATGAAGGG+GGG - chr4.4:81944539-81944558 None:intergenic 25.0%
! AAAATGTACCAAAAAGAACT+TGG + chr4.4:81945064-81945083 MS.gene048078:CDS 25.0%
! AAAGCAAGATTGATAAGTTA+TGG - chr4.4:81946999-81947018 None:intergenic 25.0%
! AAATTTATGTACCTTATGTG+AGG - chr4.4:81947309-81947328 None:intergenic 25.0%
! AAGTATCATCTAAAAGAGAA+AGG - chr4.4:81945377-81945396 None:intergenic 25.0%
! AGAAAAGATAACATTTGAAG+TGG - chr4.4:81947182-81947201 None:intergenic 25.0%
! AGAAATGATCTATATTACAG+GGG + chr4.4:81945996-81946015 MS.gene048078:intron 25.0%
! AGATACAACGTGATTTAATT+AGG - chr4.4:81945567-81945586 None:intergenic 25.0%
! ATAATATATATGCAAGGTCT+AGG + chr4.4:81946530-81946549 MS.gene048078:intron 25.0%
! ATATGATATTTCACAAGAAG+AGG + chr4.4:81947713-81947732 MS.gene048078:CDS 25.0%
! ATTGATCATCACTAATCAAT+TGG + chr4.4:81944877-81944896 MS.gene048078:CDS 25.0%
! CAATGCATAATATATATGCA+AGG + chr4.4:81946524-81946543 MS.gene048078:intron 25.0%
! CAGAAATGATCTATATTACA+GGG + chr4.4:81945995-81946014 MS.gene048078:intron 25.0%
! CTTCTTGTGAAATATCATAT+TGG - chr4.4:81947713-81947732 None:intergenic 25.0%
! CTTGGACTAAAATTTACATT+TGG - chr4.4:81943845-81943864 None:intergenic 25.0%
! TAATATATATGCAAGGTCTA+GGG + chr4.4:81946531-81946550 MS.gene048078:intron 25.0%
! TAGACTTATATTATTACAGG+TGG + chr4.4:81945214-81945233 MS.gene048078:intron 25.0%
! TAGTGATGATCAATGAATTA+AGG - chr4.4:81944871-81944890 None:intergenic 25.0%
! TCTATAAATAGTCCATTCAA+TGG + chr4.4:81944088-81944107 MS.gene048078:intron 25.0%
! TCTATTTGTTTAAATGACAC+TGG + chr4.4:81947591-81947610 MS.gene048078:intron 25.0%
! TGGAAACTATTATTAATTGC+AGG + chr4.4:81944108-81944127 MS.gene048078:intron 25.0%
! TTAATGTGTACTTATGACAA+TGG - chr4.4:81947443-81947462 None:intergenic 25.0%
! TTGAGGATAAATACACAAAT+GGG + chr4.4:81947877-81947896 MS.gene048078:CDS 25.0%
! TTTGAGGATAAATACACAAA+TGG + chr4.4:81947876-81947895 MS.gene048078:CDS 25.0%
!! AAAATCTGCAAATATCCTTT+TGG - chr4.4:81945467-81945486 None:intergenic 25.0%
!! ACAAGTACAAATTCTAAAAG+AGG + chr4.4:81944156-81944175 MS.gene048078:CDS 25.0%
!! CTTCAAATGTTATCTTTTCT+TGG + chr4.4:81947182-81947201 MS.gene048078:CDS 25.0%
!! TTAAAGACACCTTTTCATAA+GGG + chr4.4:81944935-81944954 MS.gene048078:CDS 25.0%
AAAAATGGGAAATTGAGACT+AGG + chr4.4:81944445-81944464 MS.gene048078:intron 30.0%
AAGGAAATAACCACAAAAGA+AGG + chr4.4:81944328-81944347 MS.gene048078:CDS 30.0%
AATACAACTTTCATGCATTC+TGG - chr4.4:81946869-81946888 None:intergenic 30.0%
ACGTGATTTAATTAGGACAA+AGG - chr4.4:81945560-81945579 None:intergenic 30.0%
ACTATAAAATCTCATAAGGC+TGG + chr4.4:81944662-81944681 MS.gene048078:intron 30.0%
ACTTATATTATTACAGGTGG+TGG + chr4.4:81945217-81945236 MS.gene048078:intron 30.0%
ATTTCTCATTTACCCTACAA+TGG + chr4.4:81946343-81946362 MS.gene048078:intron 30.0%
CAGTATGTTAAAGAAGATGT+AGG + chr4.4:81946962-81946981 MS.gene048078:intron 30.0%
CCAGAAATGATCTATATTAC+AGG + chr4.4:81945994-81946013 MS.gene048078:intron 30.0%
CCTGTAATATAGATCATTTC+TGG - chr4.4:81945997-81946016 None:intergenic 30.0%
CTAAAAATTGCATTGTAAGG+CGG - chr4.4:81946320-81946339 None:intergenic 30.0%
CTGGCTAATGTTAATATTGT+GGG + chr4.4:81944681-81944700 MS.gene048078:intron 30.0%
GAAATGATCTATATTACAGG+GGG + chr4.4:81945997-81946016 MS.gene048078:intron 30.0%
GAGACAACAATTGTAAAGAA+TGG + chr4.4:81946920-81946939 MS.gene048078:CDS 30.0%
GCACTAAAAATTGCATTGTA+AGG - chr4.4:81946323-81946342 None:intergenic 30.0%
GTATGAAGCTACACAATTAA+GGG + chr4.4:81944796-81944815 MS.gene048078:CDS 30.0%
TAAATTGGCAAAATCCTACT+TGG + chr4.4:81947076-81947095 MS.gene048078:CDS 30.0%
TCAATATGACTGTGAATCAA+TGG + chr4.4:81943886-81943905 MS.gene048078:CDS 30.0%
TGAGGATAAATACACAAATG+GGG + chr4.4:81947878-81947897 MS.gene048078:CDS 30.0%
TGTATGAAGCTACACAATTA+AGG + chr4.4:81944795-81944814 MS.gene048078:CDS 30.0%
TTAATAAAACTTTCGAGCAC+CGG - chr4.4:81947822-81947841 None:intergenic 30.0%
TTGATTCACAGTCATATTGA+AGG - chr4.4:81943886-81943905 None:intergenic 30.0%
! AAAGTTTTCGTATGTGAACT+CGG - chr4.4:81947859-81947878 None:intergenic 30.0%
! ATGTTATCTTTTCTTGGTCT+TGG + chr4.4:81947188-81947207 MS.gene048078:CDS 30.0%
! CTTAAAGACACCTTTTCATA+AGG + chr4.4:81944934-81944953 MS.gene048078:CDS 30.0%
! GTGATATAGAGTTGATTATG+AGG - chr4.4:81946111-81946130 None:intergenic 30.0%
! TATCTAGAGTATCTAACAAG+AGG + chr4.4:81947620-81947639 MS.gene048078:intron 30.0%
! TGATAACTCCAAGTTCTTTT+TGG - chr4.4:81945075-81945094 None:intergenic 30.0%
!! AAATTTTAGTCCAAGCGTTT+GGG + chr4.4:81943850-81943869 MS.gene048078:CDS 30.0%
!! ATCTTTTTGTTTGAATCAGG+TGG + chr4.4:81946819-81946838 MS.gene048078:intron 30.0%
!! ATGTAGCATTGATGATTGTT+GGG - chr4.4:81947256-81947275 None:intergenic 30.0%
!! GTATATGTGAGATTTTAGAG+AGG - chr4.4:81946089-81946108 None:intergenic 30.0%
!! TAAATTTTAGTCCAAGCGTT+TGG + chr4.4:81943849-81943868 MS.gene048078:CDS 30.0%
!! TCTTTTTGTTTGAATCAGGT+GGG + chr4.4:81946820-81946839 MS.gene048078:intron 30.0%
!!! GCTCGAAAGTTTTATTAATG+TGG + chr4.4:81947824-81947843 MS.gene048078:CDS 30.0%
!!! TTTTGATTTACCCTCCTAAT+AGG - chr4.4:81945922-81945941 None:intergenic 30.0%
AAAGGACATCACATTTCATC+AGG + chr4.4:81944394-81944413 MS.gene048078:CDS 35.0%
AAGCTTTCCAAAGATGTACA+AGG + chr4.4:81944761-81944780 MS.gene048078:CDS 35.0%
AATATTTACACCGTCATCCA+GGG - chr4.4:81946641-81946660 None:intergenic 35.0%
ATACTAACGCATGAAAGTGA+AGG - chr4.4:81944357-81944376 None:intergenic 35.0%
CAAACAAAGAGTTGCTTGAT+TGG + chr4.4:81947219-81947238 MS.gene048078:CDS 35.0%
CGGAAATGACCTATATTACA+GGG - chr4.4:81945801-81945820 None:intergenic 35.0%
CGTATTTGTGTACCAAGAAA+AGG - chr4.4:81944908-81944927 None:intergenic 35.0%
CGTTAGTATTTCGTTTGCTT+AGG + chr4.4:81944368-81944387 MS.gene048078:CDS 35.0%
GAAATAACCACAAAAGAAGG+TGG + chr4.4:81944331-81944350 MS.gene048078:CDS 35.0%
GAAATGACCTATATTACAGG+GGG - chr4.4:81945799-81945818 None:intergenic 35.0%
GATGATACTTATGATGCCTT+TGG + chr4.4:81945387-81945406 MS.gene048078:CDS 35.0%
GCTGGCTAATGTTAATATTG+TGG + chr4.4:81944680-81944699 MS.gene048078:intron 35.0%
GGAAATGACCTATATTACAG+GGG - chr4.4:81945800-81945819 None:intergenic 35.0%
GGTGGAAAAAATCAGAGTTT+GGG + chr4.4:81945235-81945254 MS.gene048078:CDS 35.0%
GTTCACATACGAAAACTTTG+AGG + chr4.4:81947860-81947879 MS.gene048078:CDS 35.0%
TATGATGCATACAAGGCTAA+TGG + chr4.4:81947137-81947156 MS.gene048078:CDS 35.0%
TCACATTTCTCGATGGTTAT+AGG - chr4.4:81947942-81947961 None:intergenic 35.0%
TCCAACATATGATGCATACA+AGG + chr4.4:81947130-81947149 MS.gene048078:CDS 35.0%
TCGGAAATGACCTATATTAC+AGG - chr4.4:81945802-81945821 None:intergenic 35.0%
TGATGACAAATCCTCACATA+AGG + chr4.4:81947295-81947314 MS.gene048078:CDS 35.0%
TGATGATAGCTTGATTGGTA+GGG + chr4.4:81946588-81946607 MS.gene048078:intron 35.0%
TGGTGGAAAAAATCAGAGTT+TGG + chr4.4:81945234-81945253 MS.gene048078:CDS 35.0%
TTGGGATGAAATCTAACTTG+AGG - chr4.4:81947797-81947816 None:intergenic 35.0%
TTTCGTTTGCTTAGGCAAAA+AGG + chr4.4:81944376-81944395 MS.gene048078:CDS 35.0%
TTTGGATTGAAATCAACCTG+TGG - chr4.4:81945449-81945468 None:intergenic 35.0%
! AACTTTCATGCATTCTGGAA+GGG - chr4.4:81946864-81946883 None:intergenic 35.0%
! AGAGCTTTGTGATACTTACT+TGG - chr4.4:81945098-81945117 None:intergenic 35.0%
! ATTGACTCAATGCAACGTTT+GGG + chr4.4:81944235-81944254 MS.gene048078:CDS 35.0%
! ATTTCTAGGCTCATAAGACA+TGG - chr4.4:81945316-81945335 None:intergenic 35.0%
! TGTTTAAATGACACTGGTTG+TGG + chr4.4:81947597-81947616 MS.gene048078:intron 35.0%
!! AATTTTAGTCCAAGCGTTTG+GGG + chr4.4:81943851-81943870 MS.gene048078:CDS 35.0%
!! CAGGTTGATTTCAATCCAAA+AGG + chr4.4:81945449-81945468 MS.gene048078:intron 35.0%
!! GATGTAGCATTGATGATTGT+TGG - chr4.4:81947257-81947276 None:intergenic 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG - chr4.4:81945860-81945879 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - chr4.4:81945926-81945907 None:intergenic 35.0%
!! TATATCGCTTGTTGTGATCA+TGG - chr4.4:81946445-81946464 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG + chr4.4:81945905-81945924 MS.gene048078:intron 35.0%
!! TGGTTTTTGTTTGGCCTATT+AGG - chr4.4:81945861-81945880 None:intergenic 35.0%
!! TTTTGTTTGGCCTATTAGGA+GGG + chr4.4:81945909-81945928 MS.gene048078:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+AGG + chr4.4:81945908-81945927 MS.gene048078:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - chr4.4:81945927-81945908 None:intergenic 35.0%
!!! AATTGCGGTCGTTTTGATTA+TGG + chr4.4:81945676-81945695 MS.gene048078:intron 35.0%
!!! TTTTGATTTACCCCCCTAAT+AGG + chr4.4:81945844-81945863 MS.gene048078:intron 35.0%
AAAATTGCATTGTAAGGCGG+CGG - chr4.4:81946317-81946336 None:intergenic 40.0%
AAGTTCTTCAACTGTGCCAA+AGG - chr4.4:81945406-81945425 None:intergenic 40.0%
AATAGCACTGCGAGAAAGTT+AGG + chr4.4:81945333-81945352 MS.gene048078:CDS 40.0%
AATGGGGAACTGTTGAAAGA+CGG + chr4.4:81947894-81947913 MS.gene048078:CDS 40.0%
ACACATCACAAAAACCGCAA+TGG - chr4.4:81945702-81945721 None:intergenic 40.0%
ACCAATCAAGCTATCATCAG+AGG - chr4.4:81946587-81946606 None:intergenic 40.0%
AGAACTTGAACTCTTCACAC+AGG + chr4.4:81945419-81945438 MS.gene048078:CDS 40.0%
AGCCAACAATATTGCCATTG+CGG - chr4.4:81946392-81946411 None:intergenic 40.0%
AGTTGAATGAACTGGTGGTT+TGG - chr4.4:81943795-81943814 None:intergenic 40.0%
ATAGCACTGCGAGAAAGTTA+GGG + chr4.4:81945334-81945353 MS.gene048078:CDS 40.0%
CAACTTTCATGCATTCTGGA+AGG - chr4.4:81946865-81946884 None:intergenic 40.0%
CATGGTCAATAGCCAAAAGT+AGG - chr4.4:81945298-81945317 None:intergenic 40.0%
CCAAAGATGTACAAGGAATG+TGG + chr4.4:81944768-81944787 MS.gene048078:CDS 40.0%
CCACATTCCTTGTACATCTT+TGG - chr4.4:81944771-81944790 None:intergenic 40.0%
CTAGGAACTCCCTTATGAAA+AGG - chr4.4:81944947-81944966 None:intergenic 40.0%
CTGATGATAGCTTGATTGGT+AGG + chr4.4:81946587-81946606 MS.gene048078:intron 40.0%
GAATATTTACACCGTCATCC+AGG - chr4.4:81946642-81946661 None:intergenic 40.0%
GCCTTGTATGCATCATATGT+TGG - chr4.4:81947134-81947153 None:intergenic 40.0%
GGACATTGTATGTAGAGGTT+GGG + chr4.4:81946609-81946628 MS.gene048078:intron 40.0%
GTCTTTACCCCCTGTAATAT+AGG + chr4.4:81945789-81945808 MS.gene048078:intron 40.0%
GTTAGATTTCATCCCAAGTC+CGG + chr4.4:81947800-81947819 MS.gene048078:CDS 40.0%
GTTGAATGAACTGGTGGTTT+GGG - chr4.4:81943794-81943813 None:intergenic 40.0%
TCCTCTGATGATAGCTTGAT+TGG + chr4.4:81946583-81946602 MS.gene048078:intron 40.0%
TTCCGCAATGGCAATATTGT+TGG + chr4.4:81946387-81946406 MS.gene048078:intron 40.0%
! CAATTGGTCAGTCCTTTTCT+TGG + chr4.4:81944893-81944912 MS.gene048078:CDS 40.0%
! CTTTTCATAAGGGAGTTCCT+AGG + chr4.4:81944945-81944964 MS.gene048078:CDS 40.0%
! TAACACCTTGTTTCCAACCT+AGG - chr4.4:81944965-81944984 None:intergenic 40.0%
! TGAGCTTAACTCAGTTGGTA+TGG + chr4.4:81946500-81946519 MS.gene048078:intron 40.0%
!! ATTTTAGTCCAAGCGTTTGG+GGG + chr4.4:81943852-81943871 MS.gene048078:CDS 40.0%
!! CATTGACTCAATGCAACGTT+TGG + chr4.4:81944234-81944253 MS.gene048078:CDS 40.0%
!! GCATGTTGAGTTGAATGAAC+TGG - chr4.4:81943803-81943822 None:intergenic 40.0%
!! TAGCATTGATGATTGTTGGG+TGG - chr4.4:81947253-81947272 None:intergenic 40.0%
!! TGTTGAGTTGAATGAACTGG+TGG - chr4.4:81943800-81943819 None:intergenic 40.0%
!! TTTCTCGCAGTGCTATTTCT+AGG - chr4.4:81945330-81945349 None:intergenic 40.0%
!! TTTTGTTTGGCCTATTAGGG+GGG - chr4.4:81945857-81945876 None:intergenic 40.0%
!!! CGTTTTGATTATGGCCATTG+CGG + chr4.4:81945685-81945704 MS.gene048078:intron 40.0%
AAAATATCCCCCCAAACGCT+TGG - chr4.4:81943863-81943882 None:intergenic 45.0%
ATGGCTTCCTAATGCGATTG+CGG + chr4.4:81946362-81946381 MS.gene048078:intron 45.0%
CATTTGGTCGCTTGATGTCA+TGG - chr4.4:81943829-81943848 None:intergenic 45.0%
CCAACTGAGTTAAGCTCACA+AGG - chr4.4:81946498-81946517 None:intergenic 45.0%
CCACTTTGCTTCAACCAAGT+AGG - chr4.4:81947093-81947112 None:intergenic 45.0%
CCTACTTGGTTGAAGCAAAG+TGG + chr4.4:81947090-81947109 MS.gene048078:CDS 45.0%
CCTTGTGAGCTTAACTCAGT+TGG + chr4.4:81946495-81946514 MS.gene048078:intron 45.0%
CGCATTAGGAAGCCATTGTA+GGG - chr4.4:81946358-81946377 None:intergenic 45.0%
GAAGCAAAGTGGTGCAATGA+AGG + chr4.4:81947101-81947120 MS.gene048078:CDS 45.0%
GACAAAAGTCCCTTACGCAA+GGG + chr4.4:81945257-81945276 MS.gene048078:CDS 45.0%
GGGACATTGTATGTAGAGGT+TGG + chr4.4:81946608-81946627 MS.gene048078:intron 45.0%
GGTAGGGACATTGTATGTAG+AGG + chr4.4:81946604-81946623 MS.gene048078:intron 45.0%
TCATAAGGGAGTTCCTAGGT+TGG + chr4.4:81944949-81944968 MS.gene048078:CDS 45.0%
TCGCATTAGGAAGCCATTGT+AGG - chr4.4:81946359-81946378 None:intergenic 45.0%
! GAGTTCCTAGGTTGGAAACA+AGG + chr4.4:81944957-81944976 MS.gene048078:CDS 45.0%
! GTTGGCTCAATCATGTGATG+AGG + chr4.4:81946405-81946424 MS.gene048078:intron 45.0%
! TTTGATATGAAGGGGGGTGT+TGG - chr4.4:81944533-81944552 None:intergenic 45.0%
! TTTTAGTCCAAGCGTTTGGG+GGG + chr4.4:81943853-81943872 MS.gene048078:CDS 45.0%
!!! AGTTTAAAATATTATAATTT+TGG + chr4.4:81945758-81945777 MS.gene048078:intron 5.0%
!!! ATTTTCTAATATATAAAAAA+TGG + chr4.4:81944430-81944449 MS.gene048078:intron 5.0%
!!! GTTTAAAATATTATAATTTT+GGG + chr4.4:81945759-81945778 MS.gene048078:intron 5.0%
!!! TTATAATATTTTAAACTAAA+TGG - chr4.4:81945755-81945774 None:intergenic 5.0%
!!! TTTTCTAATATATAAAAAAT+GGG + chr4.4:81944431-81944450 MS.gene048078:intron 5.0%
ACGACTCTATCCCTTGCGTA+AGG - chr4.4:81945270-81945289 None:intergenic 50.0%
CGACTCTATCCCTTGCGTAA+GGG - chr4.4:81945269-81945288 None:intergenic 50.0%
GGACAAAAGTCCCTTACGCA+AGG + chr4.4:81945256-81945275 MS.gene048078:CDS 50.0%
GTGTTTGATGCAGTGCGATG+CGG + chr4.4:81946262-81946281 MS.gene048078:intron 50.0%
TCTTCACACAGGCATTCCAC+AGG + chr4.4:81945430-81945449 MS.gene048078:CDS 50.0%
! GAGTCGTTGAGGCCTACTTT+TGG + chr4.4:81945283-81945302 MS.gene048078:CDS 50.0%
! GTGAAGGCCACCTTCTTTTG+TGG - chr4.4:81944341-81944360 None:intergenic 50.0%
! TGGGTTGAAACCCTGGATGA+CGG + chr4.4:81946628-81946647 MS.gene048078:intron 50.0%
!! AAACTTTCGAGCACCGGACT+TGG - chr4.4:81947816-81947835 None:intergenic 50.0%
!! AACTTTCGAGCACCGGACTT+GGG - chr4.4:81947815-81947834 None:intergenic 50.0%
!! TAGAGGTTGGGTTGAAACCC+TGG + chr4.4:81946621-81946640 MS.gene048078:intron 50.0%
CGCAAGGGATAGAGTCGTTG+AGG + chr4.4:81945272-81945291 MS.gene048078:CDS 55.0%
CGGAATGCCGCAATCGCATT+AGG - chr4.4:81946372-81946391 None:intergenic 55.0%
CCATTGTGCCCCCTATGCTG+CGG + chr4.4:81946285-81946304 MS.gene048078:intron 60.0%
CGGCAACAACCGCAGCATAG+GGG - chr4.4:81946297-81946316 None:intergenic 60.0%
GCGATTGCGGCATTCCGCAA+TGG + chr4.4:81946375-81946394 MS.gene048078:intron 60.0%
GCGGCAACAACCGCAGCATA+GGG - chr4.4:81946298-81946317 None:intergenic 60.0%
GGCAACAACCGCAGCATAGG+GGG - chr4.4:81946296-81946315 None:intergenic 60.0%
GGCGGCAACAACCGCAGCAT+AGG - chr4.4:81946299-81946318 None:intergenic 65.0%
! CCGCAGCATAGGGGGCACAA+TGG - chr4.4:81946288-81946307 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 81943767 81947965 81943767 ID=MS.gene048078
chr4.4 mRNA 81943767 81947965 81943767 ID=MS.gene048078.t1;Parent=MS.gene048078
chr4.4 exon 81943767 81943907 81943767 ID=MS.gene048078.t1.exon1;Parent=MS.gene048078.t1
chr4.4 CDS 81943767 81943907 81943767 ID=cds.MS.gene048078.t1;Parent=MS.gene048078.t1
chr4.4 exon 81944130 81944415 81944130 ID=MS.gene048078.t1.exon2;Parent=MS.gene048078.t1
chr4.4 CDS 81944130 81944415 81944130 ID=cds.MS.gene048078.t1;Parent=MS.gene048078.t1
chr4.4 exon 81944717 81945098 81944717 ID=MS.gene048078.t1.exon3;Parent=MS.gene048078.t1
chr4.4 CDS 81944717 81945098 81944717 ID=cds.MS.gene048078.t1;Parent=MS.gene048078.t1
chr4.4 exon 81945233 81945451 81945233 ID=MS.gene048078.t1.exon4;Parent=MS.gene048078.t1
chr4.4 CDS 81945233 81945451 81945233 ID=cds.MS.gene048078.t1;Parent=MS.gene048078.t1
chr4.4 exon 81946838 81946979 81946838 ID=MS.gene048078.t1.exon5;Parent=MS.gene048078.t1
chr4.4 CDS 81946838 81946979 81946838 ID=cds.MS.gene048078.t1;Parent=MS.gene048078.t1
chr4.4 exon 81947071 81947316 81947071 ID=MS.gene048078.t1.exon6;Parent=MS.gene048078.t1
chr4.4 CDS 81947071 81947316 81947071 ID=cds.MS.gene048078.t1;Parent=MS.gene048078.t1
chr4.4 exon 81947660 81947965 81947660 ID=MS.gene048078.t1.exon7;Parent=MS.gene048078.t1
chr4.4 CDS 81947660 81947965 81947660 ID=cds.MS.gene048078.t1;Parent=MS.gene048078.t1
Gene Sequence

>MS.gene048078

ATGGAATATCAGTCTACTGCAGCTCCCAAACCACCAGTTCATTCAACTCAACATGCAGTCCATGACATCAAGCGACCAAATGTAAATTTTAGTCCAAGCGTTTGGGGGGATATTTTCCTTCAATATGACTGTGAATCAATGGTACTTACAACTATATTATTATTATTTCCTTCAAAAAAAACTATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATTGTGTTTTTTTTCCTTAGAAAATTAATAATTATGGTTAAATGCTCTTTTCTTATAATTTAGATATTTAAATGCTCTATAAATAGTCCATTCAATGGAAACTATTATTAATTGCAGGAAAACATCATTGAGAGTATGAAGCAACAAGTACAAATTCTAAAAGAGGAAGTGAAGAAGATTTTTCTATCTTCTAATAATGATATCGCACAACAACTCAACTTCATTGACTCAATGCAACGTTTGGGAATATCTTATCATTTTGAAAGGGAAATTGATGAAGCACTAGAGCAAATCTACAAAACAATTACTCAAAATAAGGAAATAACCACAAAAGAAGGTGGCCTTCACTTTCATGCGTTAGTATTTCGTTTGCTTAGGCAAAAAGGACATCACATTTCATCAGGTACATACATTCAAATTTTCTAATATATAAAAAATGGGAAATTGAGACTAGGAGCGAAACTCACACACAATAATATAAAAAAAAAAAAAAAAATTGGAAAATTGCAAGTTCAAACCAACACCCCCCTTCATATCAAATATTTTTGAATCATTTTACTATCTGAATTGTGCATAGAGTACTTTCATGTCATATATATTAAACATAGCCGTTAATTAATCACATTATGAACATAGATTCTTAATAATCACTATAAAATCTCATAAGGCTGGCTAATGTTAATATTGTGGGTGAATTTCGACAGAGATATTTGAGAAATTCAAAAACAATGAAGAAAACTTCAATGAAAAGCTTTCCAAAGATGTACAAGGAATGTGGAGCTTGTATGAAGCTACACAATTAAGGGTTCATGATGAAGATATACTAGATGAAGCACTTGATTTCACATACTCTCACCTTAATTCATTGATCATCACTAATCAATTGGTCAGTCCTTTTCTTGGTACACAAATACGTCGCTGCTTAAAGACACCTTTTCATAAGGGAGTTCCTAGGTTGGAAACAAGGTGTTACATTTCTTCATATAGTGAAGAACCTTCCCATAATAAAGTTCTTTTGAATTTTGCAAAATTGGATTTCAATTTAATGCAGAAAATGTACCAAAAAGAACTTGGAGTTATCACCAAGTAAGTATCACAAAGCTCTAGAACATTCTACGTGCACCTTTTTTTTTTAAGTTAACTAAATTCATTTTATAGAAATTTTTTATATAGATTTTTTTTTGTGATTTCAATATGATATTAGACTTATATTATTACAGGTGGTGGAAAAAATCAGAGTTTGGGACAAAAGTCCCTTACGCAAGGGATAGAGTCGTTGAGGCCTACTTTTGGCTATTGACCATGTCTTATGAGCCTAGAAATAGCACTGCGAGAAAGTTAGGGTCAAAATTGATATTATGCCTTTCTCTTTTAGATGATACTTATGATGCCTTTGGCACAGTTGAAGAACTTGAACTCTTCACACAGGCATTCCACAGGTTGATTTCAATCCAAAAGGATATTTGCAGATTTTATACTTTCTTTTCTCAATTCAAAAAATAATGACTTGTTGATTCACAACTTTCAATTTATTAGCATTCTTGCCTTTGTCCTAATTAAATCACGTTGTATCTATTTATGAGTTTGATTTTGATAAATATTGTTTCTATTTATCAAAATCAAACTCATAAATAGAAACAACGTGATTTTTGTGTAACTATTAAATTGCGGTCGTTTTGATTATGGCCATTGCGGTTTTTGTGATGTGTATTGTAGTCGTTGTACTGTTAATTTATTTTCCATTTAGTTTAAAATATTATAATTTTGGGTTAATAGGTCTTTACCCCCTGTAATATAGGTCATTTCCGATTTTTTCCCTGTAAATTTTTTTTTTTGATTTACCCCCCTAATAGGCCAAACAAAAACCAATTTAATTTTTTTTCAAGAAATTTTCGTTTTTGTTTGGCCTATTAGGAGGGTAAATCAAAACAATTTTTTTTACAAGGGGTAAATCAAAAAAAAAAAATTACAGGGGGGAAAACCAGAAATGATCTATATTACAGGGGGTAAAGATCTATTAACCCTATAATTTTTGTTTACTTTTCTTATAATTTACTTATGTATCTTATATTTCCTCTCTAAAATCTCACATATACCTCATAATCAACTCTATATCACTTTAAAATATCTTTAATGCTTCTAAAAAACTTTTAAATCTATGATATAAAGTAAAAGAAAAAAAGTATGCTTGTAAAAAAAAGGAGCAAAAGAAAGATAGAAAAATAGTTTTGAGCACTGTATTATCTATTGTGTTTGATGCAGTGCGATGCGGCCATTGTGCCCCCTATGCTGCGGTTGTTGCCGCCGCCTTACAATGCAATTTTTAGTGCATTTCTCATTTACCCTACAATGGCTTCCTAATGCGATTGCGGCATTCCGCAATGGCAATATTGTTGGCTCAATCATGTGATGAGGTTTGCAATTCGAAACCATGATCACAACAAGCGATATATAAGCGTTTTTAGAAAGTATTTATGATTGTCCTTGTGAGCTTAACTCAGTTGGTATGGACAATGCATAATATATATGCAAGGTCTAGGGTTTTTATGATTAAAGTTAAATAATATTACTCCTCTGATGATAGCTTGATTGGTAGGGACATTGTATGTAGAGGTTGGGTTGAAACCCTGGATGACGGTGTAAATATTCTTTTTACAGACTATTTTATGGATCATATTCTTAATATCATTTGAAAAATTAATAATATCAATACTATATTATTACCATCAATTCTTTTATATTATTATTTTTATGAATTAAATTAATTTTCTATATATACTACTTTCTTTGTAGCCAATATATAATTATCTTTTTGTTTGAATCAGGTGGGATGTTAGTCTCATTCAATCCCTTCCAGAATGCATGAAAGTTGTATTTAATACAATTTTAGAACTGTGGGATGAATATGAGACAACAATTGTAAAGAATGGAAAATCAAGTTTATTGTTGCAGTATGTTAAAGAAGATGTAGGCTTCCAATATTCCATAACTTATCAATCTTGCTTTTCATCTTTCAATTAATGAATTCATATGTAAATATTTTTAATTTGATTTACAGTTTTATAAATTGGCAAAATCCTACTTGGTTGAAGCAAAGTGGTGCAATGAAGGATTTGTTCCAACATATGATGCATACAAGGCTAATGGAATTATATCTTCTACAGTTCCACTTCAAATGTTATCTTTTCTTGGTCTTGGAGAATTTTCAAACAAAGAGTTGCTTGATTGGATTTTCAGCCACCCAACAATCATCAATGCTACATCAGCTATTGCAAGACTCGCTGATGACAAATCCTCACATAAGGTACATAAATTTTGCTTCCTCAAGAATTTATGATTTTTCTACAAAAATACACTGCTACAATAACTTCAATATATTATGAAAAAACAATGAATGAATATCATAATTTATAAAGCTTTTCATTAACCATTGTCATAAGTACACATTAAAAGTATGAGTAACCCTAAAAAAAAGTACACAATAAATTATAATACTTGACTTGAAAATGATACGCACAATACTAATAAATTTGAGTGTAAAATTGAAATAACATAACAGATCTTATTTTAAGACATTGTCTATTTGTTTAAATGACACTGGTTGTGGTATCTAGAGTATCTAACAAGAGGTTTTGCTTTATTTATAGTTTGAGCAGCAAAGAGTGCATGTTGCTTCTGCAGTTGAATGTTGCATGAACCAATATGATATTTCACAAGAAGAGGCTTATAAACTCATTTTAAAAGAGATCGAAGATTATTGGATAGTTATGAACGAAGAGTTCCTCAAGTTAGATTTCATCCCAAGTCCGGTGCTCGAAAGTTTTATTAATGTGGCACGAGTATCCGAGTTCACATACGAAAACTTTGAGGATAAATACACAAATGGGGAACTGTTGAAAGACGGCATTGTTACAGTGATTCTAGATCCTATAACCATCGAGAAATGTGAGTAG
Protein sequence

>MS.gene048078.t1

MEYQSTAAPKPPVHSTQHAVHDIKRPNVNFSPSVWGDIFLQYDCESMENIIESMKQQVQILKEEVKKIFLSSNNDIAQQLNFIDSMQRLGISYHFEREIDEALEQIYKTITQNKEITTKEGGLHFHALVFRLLRQKGHHISSEIFEKFKNNEENFNEKLSKDVQGMWSLYEATQLRVHDEDILDEALDFTYSHLNSLIITNQLVSPFLGTQIRRCLKTPFHKGVPRLETRCYISSYSEEPSHNKVLLNFAKLDFNLMQKMYQKELGVITKWWKKSEFGTKVPYARDRVVEAYFWLLTMSYEPRNSTARKLGSKLILCLSLLDDTYDAFGTVEELELFTQAFHRWDVSLIQSLPECMKVVFNTILELWDEYETTIVKNGKSSLLLQYVKEDFYKLAKSYLVEAKWCNEGFVPTYDAYKANGIISSTVPLQMLSFLGLGEFSNKELLDWIFSHPTIINATSAIARLADDKSSHKFEQQRVHVASAVECCMNQYDISQEEAYKLILKEIEDYWIVMNEEFLKLDFIPSPVLESFINVARVSEFTYENFEDKYTNGELLKDGIVTVILDPITIEKCE