Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048861.t1 | XP_013447094.1 | 100 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 5.20E-81 | 310.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048861.t1 | P0DKK8 | 84.8 | 125 | 17 | 2 | 1 | 123 | 1 | 125 | 1.1e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048861.t1 | I3SV05 | 100.0 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 3.7e-81 | 310.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93753 | MS.gene048861 | PPI |
| MS.gene048861 | MS.gene040115 | PPI |
| MS.gene019556 | MS.gene048861 | PPI |
| MS.gene001756 | MS.gene048861 | PPI |
| MS.gene94561 | MS.gene048861 | PPI |
| MS.gene048861 | MS.gene056722 | PPI |
| MS.gene047001 | MS.gene048861 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048861.t1 | MTR_8g098850 | 100.000 | 177 | 0 | 0 | 1 | 177 | 1 | 177 | 6.13e-128 | 356 |
| MS.gene048861.t1 | MTR_5g010025 | 93.889 | 180 | 8 | 1 | 1 | 177 | 28 | 207 | 1.53e-120 | 339 |
| MS.gene048861.t1 | MTR_8g098850 | 100.000 | 132 | 0 | 0 | 46 | 177 | 1 | 132 | 2.28e-90 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048861.t1 | AT4G25740 | 82.237 | 152 | 25 | 1 | 1 | 152 | 1 | 150 | 1.64e-79 | 234 |
| MS.gene048861.t1 | AT5G52650 | 82.468 | 154 | 25 | 1 | 1 | 152 | 1 | 154 | 4.09e-74 | 220 |
| MS.gene048861.t1 | AT5G41520 | 75.817 | 153 | 31 | 5 | 1 | 150 | 1 | 150 | 6.56e-70 | 210 |
| MS.gene048861.t1 | AT4G25740 | 64.706 | 170 | 30 | 1 | 1 | 170 | 1 | 140 | 6.91e-60 | 183 |
| MS.gene048861.t1 | AT5G41520 | 75.701 | 107 | 21 | 4 | 46 | 150 | 1 | 104 | 7.82e-43 | 139 |
Find 64 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTAATCACCTGCAAATT+TGG | 0.141151 | 4.2:-5759005 | None:intergenic |
| GGTCGTGGATCTGGTGGTTT+TGG | 0.201005 | 4.2:+5760417 | MS.gene048861:CDS |
| TGCCAAATTGAAATCCTTCT+TGG | 0.227664 | 4.2:-5758961 | None:intergenic |
| TCTCCTCTCCCCTTCAAATC+TGG | 0.263606 | 4.2:-5759319 | None:intergenic |
| GGAGGTCCTCGTGGTGAATT+TGG | 0.264246 | 4.2:+5759369 | MS.gene048861:CDS |
| TTGCTTGGATGAATTATTAC+TGG | 0.274951 | 4.2:+5759069 | MS.gene048861:CDS |
| TGCCAAGAAGGATTTCAATT+TGG | 0.277902 | 4.2:+5758959 | MS.gene048861:CDS |
| TTTGAAGGGGAGAGGAGATT+TGG | 0.304539 | 4.2:+5759324 | MS.gene048861:CDS |
| AAATTTGGAACATCGATTTC+TGG | 0.305282 | 4.2:-5758990 | None:intergenic |
| CTGATTACAGACCCTCATTT+GGG | 0.309337 | 4.2:+5759415 | MS.gene048861:CDS |
| CAGGGTCCTGGTGGAAGGCC+TGG | 0.329758 | 4.2:+5760390 | MS.gene048861:intron |
| GCTGATTACAGACCCTCATT+TGG | 0.333812 | 4.2:+5759414 | MS.gene048861:CDS |
| AAGCCACCTGGTAGACCTTT+TGG | 0.340230 | 4.2:+5759179 | MS.gene048861:CDS |
| TGTCTTGTTGTGCAGGGTCC+TGG | 0.359491 | 4.2:+5760378 | MS.gene048861:intron |
| CCTGGATTTGGTCGTGGATC+TGG | 0.375183 | 4.2:+5760408 | MS.gene048861:CDS |
| CCTGGTGGAAGGCCTGGATT+TGG | 0.398371 | 4.2:+5760396 | MS.gene048861:CDS |
| AATCGATGTTCCAAATTTGC+AGG | 0.408613 | 4.2:+5758995 | MS.gene048861:CDS |
| CTCCTCTCCCCTTCAAATCT+GGG | 0.426727 | 4.2:-5759318 | None:intergenic |
| GCTTGTTTCTTCAAAGTAGC+AGG | 0.433371 | 4.2:-5759155 | None:intergenic |
| TTGTGCAGGGTCCTGGTGGA+AGG | 0.448944 | 4.2:+5760385 | MS.gene048861:intron |
| CTTTAAGCATCTGAGCTAGT+TGG | 0.449096 | 4.2:-5760447 | None:intergenic |
| GAAGGGGAGAGGAGATTTGG+TGG | 0.472199 | 4.2:+5759327 | MS.gene048861:CDS |
| TTATGCAGAGCTTCAAATCA+AGG | 0.477684 | 4.2:+5759027 | MS.gene048861:CDS |
| AGGGGTCCACCCAGATTTGA+AGG | 0.489080 | 4.2:+5759309 | MS.gene048861:intron |
| GGTACTTGCAGATCTCTTTG+CGG | 0.502239 | 4.2:-5758810 | None:intergenic |
| AATATAATATACCTTGGAAA+AGG | 0.503793 | 4.2:-5758831 | None:intergenic |
| TACTGGTTTCTCACTAATGA+CGG | 0.504599 | 4.2:+5759086 | MS.gene048861:CDS |
| CAATAAGCTTACCCCAAATG+AGG | 0.509168 | 4.2:-5759427 | None:intergenic |
| GTCCACAGGGTGATCGTCCT+AGG | 0.525900 | 4.2:+5759204 | MS.gene048861:CDS |
| TAAGCATCTGAGCTAGTTGG+AGG | 0.527305 | 4.2:-5760444 | None:intergenic |
| CACCCAGATTTGAAGGGGAG+AGG | 0.528752 | 4.2:+5759316 | MS.gene048861:CDS |
| ATGTTAGAGAAACCTTTGCT+TGG | 0.529285 | 4.2:+5759054 | MS.gene048861:CDS |
| GGAAGGCCTGGATTTGGTCG+TGG | 0.535608 | 4.2:+5760402 | MS.gene048861:CDS |
| CCAGATCCACGACCAAATCC+AGG | 0.536843 | 4.2:-5760408 | None:intergenic |
| TCACCCTGTGGACCACCAAA+AGG | 0.552245 | 4.2:-5759194 | None:intergenic |
| AATGAGGGTCTGTAATCAGC+AGG | 0.552369 | 4.2:-5759411 | None:intergenic |
| GTAATAATTCATCCAAGCAA+AGG | 0.557485 | 4.2:-5759066 | None:intergenic |
| CTTGTTGTGCAGGGTCCTGG+TGG | 0.561938 | 4.2:+5760381 | MS.gene048861:intron |
| CCAAATCCAGGCCTTCCACC+AGG | 0.566613 | 4.2:-5760396 | None:intergenic |
| TGGTGAATTTGGAGGAGACA+AGG | 0.568317 | 4.2:+5759380 | MS.gene048861:CDS |
| GGGTGTATGCTATGCCAAGA+AGG | 0.572773 | 4.2:+5758947 | MS.gene048861:CDS |
| GATTTGGTGGTGACCGTGAT+GGG | 0.582420 | 4.2:+5759340 | MS.gene048861:CDS |
| GGGGTCCACCCAGATTTGAA+GGG | 0.582776 | 4.2:+5759310 | MS.gene048861:intron |
| GTAGCAGGAACAATCTCAGA+AGG | 0.584325 | 4.2:-5759140 | None:intergenic |
| CTCTCCCCTTCAAATCTGGG+TGG | 0.586327 | 4.2:-5759315 | None:intergenic |
| GGATTTGGTCGTGGATCTGG+TGG | 0.587952 | 4.2:+5760411 | MS.gene048861:CDS |
| AAGAAACAAGCTAAGCCACC+TGG | 0.590290 | 4.2:+5759167 | MS.gene048861:CDS |
| GGACCACCAAAAGGTCTACC+AGG | 0.594043 | 4.2:-5759185 | None:intergenic |
| AATAAGCTTACCCCAAATGA+GGG | 0.606777 | 4.2:-5759426 | None:intergenic |
| GGTCCTCGTGGTGAATTTGG+AGG | 0.607108 | 4.2:+5759372 | MS.gene048861:CDS |
| TATGCAGAGCTTCAAATCAA+GGG | 0.617426 | 4.2:+5759028 | MS.gene048861:CDS |
| GACCTCCACGGTACCCATCA+CGG | 0.617977 | 4.2:-5759353 | None:intergenic |
| GGTGACCGTGATGGGTACCG+TGG | 0.630160 | 4.2:+5759348 | MS.gene048861:CDS |
| AGATTTGGTGGTGACCGTGA+TGG | 0.637024 | 4.2:+5759339 | MS.gene048861:CDS |
| GGTGAATTTGGAGGAGACAA+GGG | 0.645452 | 4.2:+5759381 | MS.gene048861:CDS |
| GGGTCCACCCAGATTTGAAG+GGG | 0.646728 | 4.2:+5759311 | MS.gene048861:CDS |
| TGATTACAGACCCTCATTTG+GGG | 0.655373 | 4.2:+5759416 | MS.gene048861:CDS |
| GACCGTGATGGGTACCGTGG+AGG | 0.672660 | 4.2:+5759351 | MS.gene048861:CDS |
| ATTCACCACGAGGACCTCCA+CGG | 0.674159 | 4.2:-5759365 | None:intergenic |
| GGGTACCGTGGAGGTCCTCG+TGG | 0.696695 | 4.2:+5759360 | MS.gene048861:CDS |
| GAATTTGGAGGAGACAAGGG+AGG | 0.716593 | 4.2:+5759384 | MS.gene048861:CDS |
| TACCTAGGACGATCACCCTG+TGG | 0.729018 | 4.2:-5759206 | None:intergenic |
| CCACCAAAAGGTCTACCAGG+TGG | 0.744640 | 4.2:-5759182 | None:intergenic |
| TCTCCTCCAAATTCACCACG+AGG | 0.768981 | 4.2:-5759375 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTTATTTATCAACA+AGG | - | chr4.2:5759899-5759918 | None:intergenic | 10.0% |
| !! | TTGTTAAAAAATTTCAATTA+TGG | + | chr4.2:5759932-5759951 | MS.gene048861:intron | 10.0% |
| !! | AGTAAATTAAAATACTACAT+TGG | - | chr4.2:5760164-5760183 | None:intergenic | 15.0% |
| !!! | GTATTTTAATTTACTTATTC+TGG | + | chr4.2:5760169-5760188 | MS.gene048861:intron | 15.0% |
| !! | AACCAAAAAAAAAAAACAGT+GGG | - | chr4.2:5760334-5760353 | None:intergenic | 20.0% |
| !! | AATATAATATACCTTGGAAA+AGG | - | chr4.2:5758834-5758853 | None:intergenic | 20.0% |
| !! | GTGTTAAATATAATATACCT+TGG | - | chr4.2:5758840-5758859 | None:intergenic | 20.0% |
| !!! | CTGTTGTTTATTTTATTGTA+CGG | + | chr4.2:5759243-5759262 | MS.gene048861:intron | 20.0% |
| !!! | TTTTAATTTACTTATTCTGG+TGG | + | chr4.2:5760172-5760191 | MS.gene048861:intron | 20.0% |
| ! | ATAAATACATAACATGCCAT+CGG | - | chr4.2:5759818-5759837 | None:intergenic | 25.0% |
| ! | CAAAAGAGAAATCTTGTATT+CGG | - | chr4.2:5759867-5759886 | None:intergenic | 25.0% |
| ! | CAACCAAAAAAAAAAAACAG+TGG | - | chr4.2:5760335-5760354 | None:intergenic | 25.0% |
| ! | GAAATCATATTCATAGGAAA+AGG | - | chr4.2:5760136-5760155 | None:intergenic | 25.0% |
| ! | GTGAATGAAATCATATTCAT+AGG | - | chr4.2:5760142-5760161 | None:intergenic | 25.0% |
| ! | TCATATTCATAATCGTAACT+AGG | + | chr4.2:5760239-5760258 | MS.gene048861:intron | 25.0% |
| !! | GAATACAAGATTTCTCTTTT+GGG | + | chr4.2:5759866-5759885 | MS.gene048861:intron | 25.0% |
| !!! | AAAATGGTTGATTTGTGTAT+AGG | + | chr4.2:5759289-5759308 | MS.gene048861:intron | 25.0% |
| !!! | AAATGGTTGATTTGTGTATA+GGG | + | chr4.2:5759290-5759309 | MS.gene048861:intron | 25.0% |
| AACCCTAGAATGAAGAATAA+GGG | - | chr4.2:5758724-5758743 | None:intergenic | 30.0% | |
| AATAGTGCTTACTTTAAGCA+CGG | + | chr4.2:5759734-5759753 | MS.gene048861:intron | 30.0% | |
| AGTACAATTGTATACAGGAA+TGG | - | chr4.2:5760294-5760313 | None:intergenic | 30.0% | |
| ATCCCTTATTCTTCATTCTA+GGG | + | chr4.2:5758719-5758738 | MS.gene048861:intron | 30.0% | |
| ATGATAATACCAATGCTAAC+TGG | - | chr4.2:5759647-5759666 | None:intergenic | 30.0% | |
| GAAATGAAGTGATAATACCT+AGG | - | chr4.2:5759224-5759243 | None:intergenic | 30.0% | |
| GTAATAATTCATCCAAGCAA+AGG | - | chr4.2:5759069-5759088 | None:intergenic | 30.0% | |
| TATTCATCAACAACGCAATT+GGG | - | chr4.2:5759576-5759595 | None:intergenic | 30.0% | |
| TCTGAATTGTTGAATGTAGA+GGG | + | chr4.2:5758927-5758946 | MS.gene048861:intron | 30.0% | |
| TTATTCATCAACAACGCAAT+TGG | - | chr4.2:5759577-5759596 | None:intergenic | 30.0% | |
| TTCTGAATTGTTGAATGTAG+AGG | + | chr4.2:5758926-5758945 | MS.gene048861:intron | 30.0% | |
| TTGCTTGGATGAATTATTAC+TGG | + | chr4.2:5759069-5759088 | MS.gene048861:CDS | 30.0% | |
| ! | ACAATTGTACTCTCCTATTT+TGG | + | chr4.2:5760303-5760322 | MS.gene048861:intron | 30.0% |
| ! | CAATTGTACTCTCCTATTTT+GGG | + | chr4.2:5760304-5760323 | MS.gene048861:intron | 30.0% |
| ! | CGAATACAAGATTTCTCTTT+TGG | + | chr4.2:5759865-5759884 | MS.gene048861:intron | 30.0% |
| ! | TCTTTGTTTATACGTCTATG+TGG | + | chr4.2:5758878-5758897 | MS.gene048861:intron | 30.0% |
| ! | TTACGTGGGTTATTGAAAAA+TGG | + | chr4.2:5759273-5759292 | MS.gene048861:intron | 30.0% |
| ! | TTTTGTCAGCTACAAGTTTT+GGG | + | chr4.2:5760005-5760024 | MS.gene048861:intron | 30.0% |
| ! | TTTTTGTCAGCTACAAGTTT+TGG | + | chr4.2:5760004-5760023 | MS.gene048861:intron | 30.0% |
| !! | AAATTTGGAACATCGATTTC+TGG | - | chr4.2:5758993-5759012 | None:intergenic | 30.0% |
| !! | AATGGTTGATTTGTGTATAG+GGG | + | chr4.2:5759291-5759310 | MS.gene048861:intron | 30.0% |
| !!! | GTCCCACTGTTTTTTTTTTT+TGG | + | chr4.2:5760329-5760348 | MS.gene048861:intron | 30.0% |
| !!! | TGTACGGTTTTTTATTACGT+GGG | + | chr4.2:5759259-5759278 | MS.gene048861:intron | 30.0% |
| !!! | TTGTACGGTTTTTTATTACG+TGG | + | chr4.2:5759258-5759277 | MS.gene048861:intron | 30.0% |
| AATAAGCTTACCCCAAATGA+GGG | - | chr4.2:5759429-5759448 | None:intergenic | 35.0% | |
| AATACCAATGCTAACTGGAA+CGG | - | chr4.2:5759642-5759661 | None:intergenic | 35.0% | |
| AATCGATGTTCCAAATTTGC+AGG | + | chr4.2:5758995-5759014 | MS.gene048861:CDS | 35.0% | |
| AGCTTAATCACCTGCAAATT+TGG | - | chr4.2:5759008-5759027 | None:intergenic | 35.0% | |
| ATAGAACAAGTCTGAATTGC+AGG | - | chr4.2:5760035-5760054 | None:intergenic | 35.0% | |
| ATGTTAGAGAAACCTTTGCT+TGG | + | chr4.2:5759054-5759073 | MS.gene048861:CDS | 35.0% | |
| CATCCCTTATTCTTCATTCT+AGG | + | chr4.2:5758718-5758737 | MS.gene048861:intron | 35.0% | |
| CTACGATTACATTCGAAGTT+GGG | + | chr4.2:5760062-5760081 | MS.gene048861:intron | 35.0% | |
| CTCAATGTTGCATTTGTTTC+TGG | + | chr4.2:5759455-5759474 | MS.gene048861:intron | 35.0% | |
| GAACCCTAGAATGAAGAATA+AGG | - | chr4.2:5758725-5758744 | None:intergenic | 35.0% | |
| TAGAACAAGTCTGAATTGCA+GGG | - | chr4.2:5760034-5760053 | None:intergenic | 35.0% | |
| TATGCAGAGCTTCAAATCAA+GGG | + | chr4.2:5759028-5759047 | MS.gene048861:CDS | 35.0% | |
| TCATATGATGCTCAATTGTG+TGG | + | chr4.2:5759675-5759694 | MS.gene048861:intron | 35.0% | |
| TCTACGATTACATTCGAAGT+TGG | + | chr4.2:5760061-5760080 | MS.gene048861:intron | 35.0% | |
| TGCCAAATTGAAATCCTTCT+TGG | - | chr4.2:5758964-5758983 | None:intergenic | 35.0% | |
| TGCCAAGAAGGATTTCAATT+TGG | + | chr4.2:5758959-5758978 | MS.gene048861:CDS | 35.0% | |
| TTATGCAGAGCTTCAAATCA+AGG | + | chr4.2:5759027-5759046 | MS.gene048861:CDS | 35.0% | |
| ! | AGGAGAGTACAATTGTATAC+AGG | - | chr4.2:5760299-5760318 | None:intergenic | 35.0% |
| !! | TACTGGTTTCTCACTAATGA+CGG | + | chr4.2:5759086-5759105 | MS.gene048861:CDS | 35.0% |
| AATGTAATGTCTTGCGAAGC+AGG | + | chr4.2:5759611-5759630 | MS.gene048861:intron | 40.0% | |
| CAATAAGCTTACCCCAAATG+AGG | - | chr4.2:5759430-5759449 | None:intergenic | 40.0% | |
| CTGATTACAGACCCTCATTT+GGG | + | chr4.2:5759415-5759434 | MS.gene048861:CDS | 40.0% | |
| CTTGTATTCGGCAGTCAAAA+AGG | - | chr4.2:5759855-5759874 | None:intergenic | 40.0% | |
| TCTTTGAATTACGTGTGTCC+TGG | + | chr4.2:5759761-5759780 | MS.gene048861:intron | 40.0% | |
| TGATTACAGACCCTCATTTG+GGG | + | chr4.2:5759416-5759435 | MS.gene048861:CDS | 40.0% | |
| ! | ATCTGCAAGTACCTTTTCCA+AGG | + | chr4.2:5758820-5758839 | MS.gene048861:CDS | 40.0% |
| ! | GCTTGTTTCTTCAAAGTAGC+AGG | - | chr4.2:5759158-5759177 | None:intergenic | 40.0% |
| !! | ATGTTGCATTTGTTTCTGGC+TGG | + | chr4.2:5759459-5759478 | MS.gene048861:intron | 40.0% |
| AAGAAACAAGCTAAGCCACC+TGG | + | chr4.2:5759167-5759186 | MS.gene048861:CDS | 45.0% | |
| AATGAGGGTCTGTAATCAGC+AGG | - | chr4.2:5759414-5759433 | None:intergenic | 45.0% | |
| AATTACGTGTGTCCTGGTGT+TGG | + | chr4.2:5759767-5759786 | MS.gene048861:intron | 45.0% | |
| ACAGTGGGACTACCCAAAAT+AGG | - | chr4.2:5760319-5760338 | None:intergenic | 45.0% | |
| CAATGCTAACTGGAACGGAA+CGG | - | chr4.2:5759637-5759656 | None:intergenic | 45.0% | |
| GCTGATTACAGACCCTCATT+TGG | + | chr4.2:5759414-5759433 | MS.gene048861:CDS | 45.0% | |
| GGTACTTGCAGATCTCTTTG+CGG | - | chr4.2:5758813-5758832 | None:intergenic | 45.0% | |
| GGTGAATTTGGAGGAGACAA+GGG | + | chr4.2:5759381-5759400 | MS.gene048861:CDS | 45.0% | |
| GTAGCAGGAACAATCTCAGA+AGG | - | chr4.2:5759143-5759162 | None:intergenic | 45.0% | |
| TAAGCATCTGAGCTAGTTGG+AGG | - | chr4.2:5760447-5760466 | None:intergenic | 45.0% | |
| TCAATGTCTGTCTTGTCCGA+TGG | + | chr4.2:5759799-5759818 | MS.gene048861:intron | 45.0% | |
| TGGTGAATTTGGAGGAGACA+AGG | + | chr4.2:5759380-5759399 | MS.gene048861:CDS | 45.0% | |
| TTTGAAGGGGAGAGGAGATT+TGG | + | chr4.2:5759324-5759343 | MS.gene048861:CDS | 45.0% | |
| CGTTCCGTTCCAGTTAGCAT+TGG | + | chr4.2:5759635-5759654 | MS.gene048861:intron | 50.0% | |
| CTCCTCTCCCCTTCAAATCT+GGG | - | chr4.2:5759321-5759340 | None:intergenic | 50.0% | |
| GAATTTGGAGGAGACAAGGG+AGG | + | chr4.2:5759384-5759403 | MS.gene048861:CDS | 50.0% | |
| GGGTGTATGCTATGCCAAGA+AGG | + | chr4.2:5758947-5758966 | MS.gene048861:CDS | 50.0% | |
| TCTCCTCCAAATTCACCACG+AGG | - | chr4.2:5759378-5759397 | None:intergenic | 50.0% | |
| TCTCCTCTCCCCTTCAAATC+TGG | - | chr4.2:5759322-5759341 | None:intergenic | 50.0% | |
| TGACACTACATGCCAACACC+AGG | - | chr4.2:5759782-5759801 | None:intergenic | 50.0% | |
| ! | AAGCCACCTGGTAGACCTTT+TGG | + | chr4.2:5759179-5759198 | MS.gene048861:CDS | 50.0% |
| ! | CTGAGCTGTCTTGTTGTGCA+GGG | + | chr4.2:5760372-5760391 | MS.gene048861:intron | 50.0% |
| ! | GTCGTGGATCTGGTGGTTTT+GGG | + | chr4.2:5760418-5760437 | MS.gene048861:CDS | 50.0% |
| ! | TCTGAGCTGTCTTGTTGTGC+AGG | + | chr4.2:5760371-5760390 | MS.gene048861:intron | 50.0% |
| !! | AGACCTTTTGGTGGTCCACA+GGG | + | chr4.2:5759191-5759210 | MS.gene048861:CDS | 50.0% |
| !! | AGATTTGGTGGTGACCGTGA+TGG | + | chr4.2:5759339-5759358 | MS.gene048861:CDS | 50.0% |
| !! | GATTTGGTGGTGACCGTGAT+GGG | + | chr4.2:5759340-5759359 | MS.gene048861:CDS | 50.0% |
| !! | TAGACCTTTTGGTGGTCCAC+AGG | + | chr4.2:5759190-5759209 | MS.gene048861:CDS | 50.0% |
| !! | TCGTGGATCTGGTGGTTTTG+GGG | + | chr4.2:5760419-5760438 | MS.gene048861:CDS | 50.0% |
| AGGGGTCCACCCAGATTTGA+AGG | + | chr4.2:5759309-5759328 | MS.gene048861:intron | 55.0% | |
| ATTCACCACGAGGACCTCCA+CGG | - | chr4.2:5759368-5759387 | None:intergenic | 55.0% | |
| CACCCAGATTTGAAGGGGAG+AGG | + | chr4.2:5759316-5759335 | MS.gene048861:CDS | 55.0% | |
| CCACCAAAAGGTCTACCAGG+TGG | - | chr4.2:5759185-5759204 | None:intergenic | 55.0% | |
| CCAGATCCACGACCAAATCC+AGG | - | chr4.2:5760411-5760430 | None:intergenic | 55.0% | |
| CTCTCCCCTTCAAATCTGGG+TGG | - | chr4.2:5759318-5759337 | None:intergenic | 55.0% | |
| GAAGGGGAGAGGAGATTTGG+TGG | + | chr4.2:5759327-5759346 | MS.gene048861:CDS | 55.0% | |
| GGACCACCAAAAGGTCTACC+AGG | - | chr4.2:5759188-5759207 | None:intergenic | 55.0% | |
| GGAGGTCCTCGTGGTGAATT+TGG | + | chr4.2:5759369-5759388 | MS.gene048861:CDS | 55.0% | |
| GGGGTCCACCCAGATTTGAA+GGG | + | chr4.2:5759310-5759329 | MS.gene048861:intron | 55.0% | |
| GGGTCCACCCAGATTTGAAG+GGG | + | chr4.2:5759311-5759330 | MS.gene048861:CDS | 55.0% | |
| GGTCCTCGTGGTGAATTTGG+AGG | + | chr4.2:5759372-5759391 | MS.gene048861:CDS | 55.0% | |
| TACCTAGGACGATCACCCTG+TGG | - | chr4.2:5759209-5759228 | None:intergenic | 55.0% | |
| TCACCCTGTGGACCACCAAA+AGG | - | chr4.2:5759197-5759216 | None:intergenic | 55.0% | |
| ! | CCACCTGGTAGACCTTTTGG+TGG | + | chr4.2:5759182-5759201 | MS.gene048861:CDS | 55.0% |
| ! | CCTGGATTTGGTCGTGGATC+TGG | + | chr4.2:5760408-5760427 | MS.gene048861:CDS | 55.0% |
| ! | GGATTTGGTCGTGGATCTGG+TGG | + | chr4.2:5760411-5760430 | MS.gene048861:CDS | 55.0% |
| ! | GGTCGTGGATCTGGTGGTTT+TGG | + | chr4.2:5760417-5760436 | MS.gene048861:CDS | 55.0% |
| ! | TGTCTTGTTGTGCAGGGTCC+TGG | + | chr4.2:5760378-5760397 | MS.gene048861:intron | 55.0% |
| CCAAATCCAGGCCTTCCACC+AGG | - | chr4.2:5760399-5760418 | None:intergenic | 60.0% | |
| CCTGGTGGAAGGCCTGGATT+TGG | + | chr4.2:5760396-5760415 | MS.gene048861:CDS | 60.0% | |
| GACCTCCACGGTACCCATCA+CGG | - | chr4.2:5759356-5759375 | None:intergenic | 60.0% | |
| GTCCACAGGGTGATCGTCCT+AGG | + | chr4.2:5759204-5759223 | MS.gene048861:CDS | 60.0% | |
| TTGTGCAGGGTCCTGGTGGA+AGG | + | chr4.2:5760385-5760404 | MS.gene048861:intron | 60.0% | |
| ! | CTTGTTGTGCAGGGTCCTGG+TGG | + | chr4.2:5760381-5760400 | MS.gene048861:intron | 60.0% |
| ! | GGAAGGCCTGGATTTGGTCG+TGG | + | chr4.2:5760402-5760421 | MS.gene048861:CDS | 60.0% |
| !! | GACCGTGATGGGTACCGTGG+AGG | + | chr4.2:5759351-5759370 | MS.gene048861:CDS | 65.0% |
| !! | GGTGACCGTGATGGGTACCG+TGG | + | chr4.2:5759348-5759367 | MS.gene048861:CDS | 65.0% |
| CAGGGTCCTGGTGGAAGGCC+TGG | + | chr4.2:5760390-5760409 | MS.gene048861:intron | 70.0% | |
| ! | GGGTACCGTGGAGGTCCTCG+TGG | + | chr4.2:5759360-5759379 | MS.gene048861:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 5758710 | 5760467 | 5758710 | ID=MS.gene048861 |
| chr4.2 | mRNA | 5758710 | 5760467 | 5758710 | ID=MS.gene048861.t1;Parent=MS.gene048861 |
| chr4.2 | exon | 5758710 | 5758712 | 5758710 | ID=MS.gene048861.t1.exon1;Parent=MS.gene048861.t1 |
| chr4.2 | CDS | 5758710 | 5758712 | 5758710 | ID=cds.MS.gene048861.t1;Parent=MS.gene048861.t1 |
| chr4.2 | exon | 5758793 | 5758841 | 5758793 | ID=MS.gene048861.t1.exon2;Parent=MS.gene048861.t1 |
| chr4.2 | CDS | 5758793 | 5758841 | 5758793 | ID=cds.MS.gene048861.t1;Parent=MS.gene048861.t1 |
| chr4.2 | exon | 5758946 | 5759225 | 5758946 | ID=MS.gene048861.t1.exon3;Parent=MS.gene048861.t1 |
| chr4.2 | CDS | 5758946 | 5759225 | 5758946 | ID=cds.MS.gene048861.t1;Parent=MS.gene048861.t1 |
| chr4.2 | exon | 5759311 | 5759437 | 5759311 | ID=MS.gene048861.t1.exon4;Parent=MS.gene048861.t1 |
| chr4.2 | CDS | 5759311 | 5759437 | 5759311 | ID=cds.MS.gene048861.t1;Parent=MS.gene048861.t1 |
| chr4.2 | exon | 5760393 | 5760467 | 5760393 | ID=MS.gene048861.t1.exon5;Parent=MS.gene048861.t1 |
| chr4.2 | CDS | 5760393 | 5760467 | 5760393 | ID=cds.MS.gene048861.t1;Parent=MS.gene048861.t1 |
| Gene Sequence |
| Protein sequence |
