Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21960.t1 | XP_003595165.1 | 85.6 | 548 | 13 | 3 | 1 | 484 | 1 | 546 | 4.90E-259 | 903.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21960.t1 | Q9SU79 | 52.5 | 554 | 163 | 11 | 2 | 478 | 1 | 531 | 3.8e-143 | 509.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21960.t1 | A2Q567 | 85.6 | 548 | 13 | 3 | 1 | 484 | 1 | 546 | 3.6e-259 | 903.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene21960 | 0.81113 | 8.17E-51 | -1.69E-46 |
| MS.gene049221 | MS.gene21960 | 0.80523 | 1.48E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene21960 | 0.800149 | 1.65E-48 | -1.69E-46 |
| MS.gene049501 | MS.gene21960 | 0.814859 | 1.24E-51 | -1.69E-46 |
| MS.gene049711 | MS.gene21960 | 0.818453 | 1.95E-52 | -1.69E-46 |
| MS.gene049770 | MS.gene21960 | 0.804453 | 2.15E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene21960 | 0.809753 | 1.62E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene21960 | 0.820779 | 5.73E-53 | -1.69E-46 |
| MS.gene049887 | MS.gene21960 | 0.803556 | 3.29E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene21960 | 0.834968 | 2.20E-56 | -1.69E-46 |
| MS.gene05045 | MS.gene21960 | 0.803139 | 4.02E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene21960 | 0.85975 | 3.33E-63 | -1.69E-46 |
| MS.gene050808 | MS.gene21960 | 0.829279 | 5.63E-55 | -1.69E-46 |
| MS.gene050959 | MS.gene21960 | 0.814409 | 1.56E-51 | -1.69E-46 |
| MS.gene051018 | MS.gene21960 | 0.831588 | 1.53E-55 | -1.69E-46 |
| MS.gene051180 | MS.gene21960 | 0.806222 | 9.13E-50 | -1.69E-46 |
| MS.gene051199 | MS.gene21960 | 0.804202 | 2.42E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene21960 | 0.817584 | 3.06E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene21960 | 0.813315 | 2.72E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene21960 | 0.806346 | 8.60E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene21960 | 0.852009 | 6.11E-61 | -1.69E-46 |
| MS.gene05157 | MS.gene21960 | 0.849705 | 2.72E-60 | -1.69E-46 |
| MS.gene051664 | MS.gene21960 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene21960 | 0.813743 | 2.19E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene21960 | 0.861453 | 1.02E-63 | -1.69E-46 |
| MS.gene051720 | MS.gene21960 | 0.875239 | 3.60E-68 | -1.69E-46 |
| MS.gene052020 | MS.gene21960 | 0.813195 | 2.89E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene21960 | 0.849896 | 2.41E-60 | -1.69E-46 |
| MS.gene052397 | MS.gene21960 | 0.8096 | 1.75E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene21960 | 0.843314 | 1.51E-58 | -1.69E-46 |
| MS.gene052611 | MS.gene21960 | 0.81409 | 1.84E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene21960 | 0.871289 | 7.65E-67 | -1.69E-46 |
| MS.gene052732 | MS.gene21960 | 0.831628 | 1.50E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene21960 | 0.805316 | 1.42E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene21960 | 0.815253 | 1.02E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene21960 | 0.864041 | 1.62E-64 | -1.69E-46 |
| MS.gene053174 | MS.gene21960 | 0.813238 | 2.83E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene21960 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene21960 | 0.814671 | 1.37E-51 | -1.69E-46 |
| MS.gene053331 | MS.gene21960 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene21960 | 0.807386 | 5.18E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene21960 | 0.810511 | 1.11E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene21960 | 0.816901 | 4.35E-52 | -1.69E-46 |
| MS.gene054550 | MS.gene21960 | 0.81958 | 1.08E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene21960 | 0.864324 | 1.32E-64 | -1.69E-46 |
| MS.gene054791 | MS.gene21960 | 0.800639 | 1.31E-48 | -1.69E-46 |
| MS.gene055144 | MS.gene21960 | 0.802009 | 6.88E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene21960 | 0.901868 | 1.73E-78 | -1.69E-46 |
| MS.gene055466 | MS.gene21960 | 0.891594 | 3.44E-74 | -1.69E-46 |
| MS.gene055467 | MS.gene21960 | 0.814364 | 1.60E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene21960 | 0.883701 | 3.59E-71 | -1.69E-46 |
| MS.gene055469 | MS.gene21960 | 0.853096 | 3.00E-61 | -1.69E-46 |
| MS.gene055512 | MS.gene21960 | 0.813076 | 3.07E-51 | -1.69E-46 |
| MS.gene055537 | MS.gene21960 | 0.852528 | 4.35E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene21960 | -0.870083 | 1.91E-66 | -1.69E-46 |
| MS.gene055861 | MS.gene21960 | -0.801758 | 7.74E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene21960 | 0.826848 | 2.17E-54 | -1.69E-46 |
| MS.gene055891 | MS.gene21960 | 0.83955 | 1.48E-57 | -1.69E-46 |
| MS.gene056005 | MS.gene21960 | 0.808017 | 3.81E-50 | -1.69E-46 |
| MS.gene056043 | MS.gene21960 | -0.852833 | 3.56E-61 | -1.69E-46 |
| MS.gene05604 | MS.gene21960 | 0.814883 | 1.23E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene21960 | 0.822897 | 1.85E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene21960 | 0.822481 | 2.31E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene21960 | 0.820484 | 6.70E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene21960 | 0.822032 | 2.94E-53 | -1.69E-46 |
| MS.gene058087 | MS.gene21960 | 0.859019 | 5.52E-63 | -1.69E-46 |
| MS.gene058339 | MS.gene21960 | 0.814221 | 1.72E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene21960 | 0.824177 | 9.30E-54 | -1.69E-46 |
| MS.gene058636 | MS.gene21960 | 0.812396 | 4.33E-51 | -1.69E-46 |
| MS.gene058852 | MS.gene21960 | 0.80776 | 4.32E-50 | -1.69E-46 |
| MS.gene059426 | MS.gene21960 | 0.803411 | 3.53E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene21960 | 0.811332 | 7.38E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene21960 | 0.81865 | 1.75E-52 | -1.69E-46 |
| MS.gene059937 | MS.gene21960 | 0.817565 | 3.09E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene21960 | 0.811282 | 7.57E-51 | -1.69E-46 |
| MS.gene060519 | MS.gene21960 | 0.836507 | 8.99E-57 | -1.69E-46 |
| MS.gene060587 | MS.gene21960 | 0.83086 | 2.31E-55 | -1.69E-46 |
| MS.gene061176 | MS.gene21960 | 0.811769 | 5.93E-51 | -1.69E-46 |
| MS.gene061177 | MS.gene21960 | 0.812039 | 5.18E-51 | -1.69E-46 |
| MS.gene061178 | MS.gene21960 | 0.81173 | 6.05E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21960.t1 | MTR_2g039160 | 86.314 | 548 | 9 | 3 | 1 | 484 | 1 | 546 | 0.0 | 942 |
| MS.gene21960.t1 | MTR_3g055090 | 24.812 | 532 | 243 | 18 | 5 | 474 | 158 | 594 | 9.25e-27 | 114 |
| MS.gene21960.t1 | MTR_1g050535 | 25.636 | 472 | 265 | 20 | 34 | 475 | 232 | 647 | 8.00e-23 | 102 |
| MS.gene21960.t1 | MTR_6g084700 | 25.147 | 509 | 284 | 19 | 3 | 474 | 217 | 665 | 8.83e-23 | 102 |
| MS.gene21960.t1 | MTR_1g050535 | 25.636 | 472 | 265 | 20 | 34 | 475 | 232 | 647 | 8.96e-23 | 102 |
| MS.gene21960.t1 | MTR_8g464450 | 25.615 | 488 | 241 | 21 | 34 | 474 | 185 | 597 | 7.94e-22 | 99.4 |
| MS.gene21960.t1 | MTR_1g023510 | 30.645 | 248 | 126 | 9 | 240 | 473 | 1130 | 1345 | 1.36e-19 | 93.2 |
| MS.gene21960.t1 | MTR_5g090300 | 23.779 | 471 | 289 | 14 | 34 | 483 | 51 | 472 | 4.81e-15 | 77.8 |
| MS.gene21960.t1 | MTR_3g113170 | 29.648 | 199 | 104 | 6 | 280 | 473 | 1177 | 1344 | 2.99e-14 | 76.3 |
| MS.gene21960.t1 | MTR_3g113170 | 29.648 | 199 | 104 | 6 | 280 | 473 | 1177 | 1344 | 3.77e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21960.t1 | AT4G29720 | 52.888 | 554 | 161 | 11 | 2 | 478 | 1 | 531 | 0.0 | 533 |
| MS.gene21960.t1 | AT1G62830 | 27.672 | 524 | 246 | 22 | 3 | 474 | 263 | 705 | 1.67e-27 | 117 |
| MS.gene21960.t1 | AT3G13682 | 25.451 | 499 | 228 | 19 | 34 | 474 | 183 | 595 | 7.28e-25 | 108 |
| MS.gene21960.t1 | AT3G10390 | 25.737 | 509 | 282 | 22 | 5 | 481 | 184 | 628 | 3.92e-23 | 103 |
| MS.gene21960.t1 | AT3G10390 | 25.737 | 509 | 282 | 22 | 5 | 481 | 236 | 680 | 4.65e-23 | 103 |
| MS.gene21960.t1 | AT3G59050 | 24.547 | 497 | 294 | 17 | 4 | 476 | 27 | 466 | 4.70e-23 | 102 |
| MS.gene21960.t1 | AT3G10390 | 25.737 | 509 | 282 | 22 | 5 | 481 | 236 | 680 | 5.31e-23 | 103 |
| MS.gene21960.t1 | AT3G10390 | 25.737 | 509 | 282 | 22 | 5 | 481 | 184 | 628 | 7.16e-23 | 102 |
| MS.gene21960.t1 | AT1G65840 | 25.714 | 490 | 291 | 21 | 5 | 476 | 28 | 462 | 1.72e-22 | 100 |
| MS.gene21960.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
| MS.gene21960.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
| MS.gene21960.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
| MS.gene21960.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
| MS.gene21960.t1 | AT4G16310 | 25.311 | 241 | 138 | 7 | 243 | 473 | 894 | 1102 | 3.88e-13 | 72.8 |
Find 75 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTACTTCAGTGGTCTT+AGG | 0.217029 | 2.4:+50881100 | MS.gene21960:CDS |
| AAACCAAAGATTGTGATAAT+TGG | 0.241698 | 2.4:+50879533 | MS.gene21960:CDS |
| GCTCCAATTATCACAATCTT+TGG | 0.254844 | 2.4:-50879536 | None:intergenic |
| ACACTTGAATTGTTGTAAAT+AGG | 0.269251 | 2.4:-50880751 | None:intergenic |
| GAAGAAGAAGAAGAGGTAAA+TGG | 0.285277 | 2.4:+50880082 | MS.gene21960:CDS |
| GTTCTCTTATCTTGGTTTGC+TGG | 0.312436 | 2.4:+50880772 | MS.gene21960:CDS |
| TTATACTTCAGCTGGTGATT+TGG | 0.313308 | 2.4:+50880174 | MS.gene21960:CDS |
| AGAATCAACACATCAGAATT+TGG | 0.315413 | 2.4:+50879662 | MS.gene21960:CDS |
| GAAGAAGAGGTAAATGGTTA+TGG | 0.320591 | 2.4:+50880088 | MS.gene21960:CDS |
| TGAAATACCATTTGAAGAAA+TGG | 0.327279 | 2.4:-50880661 | None:intergenic |
| ATTCAAGTGTTCTCTTATCT+TGG | 0.345001 | 2.4:+50880764 | MS.gene21960:CDS |
| TTGCTATTATCTTTCATCAT+TGG | 0.352036 | 2.4:-50881006 | None:intergenic |
| GAAACAGGATCAACAATAGA+AGG | 0.352608 | 2.4:-50879863 | None:intergenic |
| GCAATTTCAAGGCTAGGTTT+TGG | 0.369405 | 2.4:+50880559 | MS.gene21960:CDS |
| TTCAACATTATCATTGTGTT+GGG | 0.378059 | 2.4:+50881139 | MS.gene21960:CDS |
| AAAGCTTCTTCTTCAAACTT+TGG | 0.392889 | 2.4:+50879983 | MS.gene21960:CDS |
| TGTTGAGCAATCTTGTGAAT+TGG | 0.397369 | 2.4:-50879737 | None:intergenic |
| GTTGTTTCCATTTCTTCAAA+TGG | 0.400506 | 2.4:+50880654 | MS.gene21960:CDS |
| TCAAAGTTGAAGCAATTTCA+AGG | 0.401907 | 2.4:+50880548 | MS.gene21960:intron |
| AGCTTACTTCAGTGGTCTTA+GGG | 0.402916 | 2.4:+50881101 | MS.gene21960:CDS |
| TTATCTTTCATCATTGGTAA+TGG | 0.409324 | 2.4:-50881000 | None:intergenic |
| CCACCTGGTTTAATTCAGTT+AGG | 0.422537 | 2.4:+50880304 | MS.gene21960:CDS |
| AGGTAAATGGTTATGGAGAT+TGG | 0.425158 | 2.4:+50880095 | MS.gene21960:CDS |
| CACTTCACTCTGACCAACCT+TGG | 0.426510 | 2.4:+50879768 | MS.gene21960:CDS |
| TTTGAACTCATTGTTGTTGA+AGG | 0.427344 | 2.4:+50879620 | MS.gene21960:CDS |
| CTTCAACATTATCATTGTGT+TGG | 0.427755 | 2.4:+50881138 | MS.gene21960:CDS |
| GTGGTCTTAGGGAAGCTAAT+AGG | 0.439374 | 2.4:+50881112 | MS.gene21960:CDS |
| TATTTGAAAAGCTTTGAAAC+AGG | 0.443778 | 2.4:-50879878 | None:intergenic |
| GTTGAAGCAATTTCAAGGCT+AGG | 0.446034 | 2.4:+50880553 | MS.gene21960:intron |
| GCTTGATGCTTACTTTGAAT+CGG | 0.455249 | 2.4:+50880048 | MS.gene21960:CDS |
| ACTTCACTCTGACCAACCTT+GGG | 0.455964 | 2.4:+50879769 | MS.gene21960:CDS |
| GCTACATGGATCCATGGAAT+TGG | 0.463411 | 2.4:+50879707 | MS.gene21960:CDS |
| AGTGAGTATAGAATGTTTCC+AGG | 0.464736 | 2.4:+50880220 | MS.gene21960:CDS |
| CTCACAACAATTTCTGAAGG+TGG | 0.491111 | 2.4:+50879827 | MS.gene21960:CDS |
| GTTGAAGGTGGAACAAGAAT+TGG | 0.493482 | 2.4:+50879635 | MS.gene21960:CDS |
| CCTGCAAACAAAATTTGAAG+TGG | 0.510882 | 2.4:-50881039 | None:intergenic |
| CTACACTTCAACAGCTTCAA+AGG | 0.511057 | 2.4:+50879592 | MS.gene21960:CDS |
| GAAGAAATCACAATTGCTAA+AGG | 0.512712 | 2.4:+50880244 | MS.gene21960:CDS |
| CTTGATGATGAAAATTCAGA+AGG | 0.518084 | 2.4:+50880631 | MS.gene21960:CDS |
| TCATACAGTTATGTTGCAGT+TGG | 0.518630 | 2.4:+50880943 | MS.gene21960:CDS |
| ACTCATTATTCAACAACTCA+TGG | 0.519273 | 2.4:+50881078 | MS.gene21960:CDS |
| TTGGACTGTTACCAATTCCA+TGG | 0.525362 | 2.4:-50879718 | None:intergenic |
| CAACCTTGGGAGTGCATGGA+TGG | 0.526564 | 2.4:+50879782 | MS.gene21960:CDS |
| TGACCAACCTTGGGAGTGCA+TGG | 0.529658 | 2.4:+50879778 | MS.gene21960:CDS |
| ATAATTGGAGCTGGAATGGC+AGG | 0.534793 | 2.4:+50879548 | MS.gene21960:CDS |
| AAAGATGAAGAAATAATCAA+TGG | 0.536875 | 2.4:+50880823 | MS.gene21960:CDS |
| TTAACTAAAGAAACTGCAAA+AGG | 0.536895 | 2.4:+50879926 | MS.gene21960:CDS |
| CATCCATGCACTCCCAAGGT+TGG | 0.537958 | 2.4:-50879781 | None:intergenic |
| AAGATTGTGATAATTGGAGC+TGG | 0.539653 | 2.4:+50879539 | MS.gene21960:CDS |
| GAGAGGACTTATACTTCAGC+TGG | 0.547554 | 2.4:+50880166 | MS.gene21960:CDS |
| GCAATTGTGATTTCTTCACC+TGG | 0.548683 | 2.4:-50880238 | None:intergenic |
| TGGTGGTGACAAGATTGAGA+TGG | 0.554512 | 2.4:+50879682 | MS.gene21960:CDS |
| TTTCCATCCATGCACTCCCA+AGG | 0.566090 | 2.4:-50879785 | None:intergenic |
| TGTGATAATTGGAGCTGGAA+TGG | 0.568039 | 2.4:+50879544 | MS.gene21960:CDS |
| ATGGGAGCTACATGGATCCA+TGG | 0.574347 | 2.4:+50879701 | MS.gene21960:CDS |
| GTTGGTCAGAGTGAAGTGAA+TGG | 0.579847 | 2.4:-50879763 | None:intergenic |
| TCTCTCACAACAATTTCTGA+AGG | 0.585823 | 2.4:+50879824 | MS.gene21960:CDS |
| GAACTCATTGTTGTTGAAGG+TGG | 0.587409 | 2.4:+50879623 | MS.gene21960:CDS |
| TATGTTGCAGTTGGTTCAAG+TGG | 0.591461 | 2.4:+50880952 | MS.gene21960:CDS |
| TATCTCATGGAGTATTCTCA+AGG | 0.592364 | 2.4:+50879899 | MS.gene21960:CDS |
| AGATTGAGATGGGAGCTACA+TGG | 0.593418 | 2.4:+50879693 | MS.gene21960:CDS |
| GTCATTGTTACTGTTTCACT+AGG | 0.594629 | 2.4:+50880439 | MS.gene21960:CDS |
| TTCACCTCAAAATGAAACAA+AGG | 0.596200 | 2.4:+50880684 | MS.gene21960:CDS |
| AGTTCTTAGTTACTATAACA+TGG | 0.609673 | 2.4:+50879955 | MS.gene21960:CDS |
| TGGTGAAGATTTAGATACAA+TGG | 0.612781 | 2.4:+50880972 | MS.gene21960:CDS |
| GGTGGTGACAAGATTGAGAT+GGG | 0.612920 | 2.4:+50879683 | MS.gene21960:CDS |
| TTGATGATGAAAATTCAGAA+GGG | 0.619972 | 2.4:+50880632 | MS.gene21960:CDS |
| GAAGGTGGAACAAGAATTGG+TGG | 0.621735 | 2.4:+50879638 | MS.gene21960:CDS |
| TTACCTAACTGAATTAAACC+AGG | 0.637986 | 2.4:-50880307 | None:intergenic |
| ATCAACACATCAGAATTTGG+TGG | 0.642669 | 2.4:+50879665 | MS.gene21960:CDS |
| ACTCATGGAGCTTACTTCAG+TGG | 0.659052 | 2.4:+50881093 | MS.gene21960:CDS |
| CCTAACTGAATTAAACCAGG+TGG | 0.685115 | 2.4:-50880304 | None:intergenic |
| CAAAGGACAAGAAAATACCA+TGG | 0.714988 | 2.4:+50880701 | MS.gene21960:CDS |
| AGGACAAGAAAATACCATGG+TGG | 0.728606 | 2.4:+50880704 | MS.gene21960:CDS |
| CAATGTATGAGAATACTGAG+AGG | 0.762590 | 2.4:+50880149 | MS.gene21960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTAAAAAAAATTGAA+TGG | + | chr2.4:50880329-50880348 | MS.gene21960:intron | 10.0% |
| !! | AAAGATGAAGAAATAATCAA+TGG | + | chr2.4:50880823-50880842 | MS.gene21960:CDS | 20.0% |
| !! | TCTAAAAAGAATCTTAGTAT+TGG | + | chr2.4:50880007-50880026 | MS.gene21960:CDS | 20.0% |
| !!! | ATAAAGTTTTGAAGAGTAAA+TGG | + | chr2.4:50880896-50880915 | MS.gene21960:CDS | 20.0% |
| !!! | TAAAGTTTTGAAGAGTAAAT+GGG | + | chr2.4:50880897-50880916 | MS.gene21960:CDS | 20.0% |
| ! | AAACCAAAGATTGTGATAAT+TGG | + | chr2.4:50879533-50879552 | MS.gene21960:CDS | 25.0% |
| ! | ACACTTGAATTGTTGTAAAT+AGG | - | chr2.4:50880754-50880773 | None:intergenic | 25.0% |
| ! | AGTTCTTAGTTACTATAACA+TGG | + | chr2.4:50879955-50879974 | MS.gene21960:CDS | 25.0% |
| ! | TGAAATACCATTTGAAGAAA+TGG | - | chr2.4:50880664-50880683 | None:intergenic | 25.0% |
| ! | TTAACTAAAGAAACTGCAAA+AGG | + | chr2.4:50879926-50879945 | MS.gene21960:CDS | 25.0% |
| ! | TTATCTTTCATCATTGGTAA+TGG | - | chr2.4:50881003-50881022 | None:intergenic | 25.0% |
| ! | TTCAACATTATCATTGTGTT+GGG | + | chr2.4:50881139-50881158 | MS.gene21960:CDS | 25.0% |
| !! | AAAGCTTTTCAAATATCTCA+TGG | + | chr2.4:50879886-50879905 | MS.gene21960:CDS | 25.0% |
| !! | GCTATGATGATAATTGTTTT+AGG | + | chr2.4:50880368-50880387 | MS.gene21960:intron | 25.0% |
| !! | TCAAATTTCACTTCATTTTG+AGG | - | chr2.4:50880877-50880896 | None:intergenic | 25.0% |
| !! | TTGCTATTATCTTTCATCAT+TGG | - | chr2.4:50881009-50881028 | None:intergenic | 25.0% |
| !!! | AAAGTTTTGAAGAGTAAATG+GGG | + | chr2.4:50880898-50880917 | MS.gene21960:CDS | 25.0% |
| !!! | TATTTGAAAAGCTTTGAAAC+AGG | - | chr2.4:50879881-50879900 | None:intergenic | 25.0% |
| !!! | TTGATGATGAAAATTCAGAA+GGG | + | chr2.4:50880632-50880651 | MS.gene21960:CDS | 25.0% |
| AAAGCTTCTTCTTCAAACTT+TGG | + | chr2.4:50879983-50880002 | MS.gene21960:CDS | 30.0% | |
| ACTCATTATTCAACAACTCA+TGG | + | chr2.4:50881078-50881097 | MS.gene21960:CDS | 30.0% | |
| AGAATCAACACATCAGAATT+TGG | + | chr2.4:50879662-50879681 | MS.gene21960:CDS | 30.0% | |
| ATTCAAGTGTTCTCTTATCT+TGG | + | chr2.4:50880764-50880783 | MS.gene21960:CDS | 30.0% | |
| CTGTATGATCCTAAAAACAA+AGG | - | chr2.4:50880931-50880950 | None:intergenic | 30.0% | |
| CTTCAACATTATCATTGTGT+TGG | + | chr2.4:50881138-50881157 | MS.gene21960:CDS | 30.0% | |
| GAAGAAATCACAATTGCTAA+AGG | + | chr2.4:50880244-50880263 | MS.gene21960:CDS | 30.0% | |
| TCAAAGTTGAAGCAATTTCA+AGG | + | chr2.4:50880548-50880567 | MS.gene21960:intron | 30.0% | |
| TGGTGAAGATTTAGATACAA+TGG | + | chr2.4:50880972-50880991 | MS.gene21960:CDS | 30.0% | |
| TTACCTAACTGAATTAAACC+AGG | - | chr2.4:50880310-50880329 | None:intergenic | 30.0% | |
| TTCACCTCAAAATGAAACAA+AGG | + | chr2.4:50880684-50880703 | MS.gene21960:CDS | 30.0% | |
| ! | ACTTTGAAAGATGGAAGTTT+AGG | - | chr2.4:50880535-50880554 | None:intergenic | 30.0% |
| ! | ATTGCTTCAACTTTGAAAGA+TGG | - | chr2.4:50880544-50880563 | None:intergenic | 30.0% |
| ! | GATAGTGATGATGATGATAA+AGG | + | chr2.4:50880496-50880515 | MS.gene21960:intron | 30.0% |
| ! | GTTGTTTCCATTTCTTCAAA+TGG | + | chr2.4:50880654-50880673 | MS.gene21960:CDS | 30.0% |
| ! | TTTGAACTCATTGTTGTTGA+AGG | + | chr2.4:50879620-50879639 | MS.gene21960:CDS | 30.0% |
| !! | CTTGATGATGAAAATTCAGA+AGG | + | chr2.4:50880631-50880650 | MS.gene21960:CDS | 30.0% |
| !! | TTGTCCTTTGTTTCATTTTG+AGG | - | chr2.4:50880691-50880710 | None:intergenic | 30.0% |
| !!! | AAGTTTTGAAGAGTAAATGG+GGG | + | chr2.4:50880899-50880918 | MS.gene21960:CDS | 30.0% |
| !!! | ATTGGTTCTTTTTTGAGACA+AGG | + | chr2.4:50880025-50880044 | MS.gene21960:CDS | 30.0% |
| !!! | TTGGTTCTTTTTTGAGACAA+GGG | + | chr2.4:50880026-50880045 | MS.gene21960:CDS | 30.0% |
| AAGATTGTGATAATTGGAGC+TGG | + | chr2.4:50879539-50879558 | MS.gene21960:CDS | 35.0% | |
| AGAAGAAGAAGAAGAAGAAG+AGG | + | chr2.4:50880075-50880094 | MS.gene21960:CDS | 35.0% | |
| AGGTAAATGGTTATGGAGAT+TGG | + | chr2.4:50880095-50880114 | MS.gene21960:CDS | 35.0% | |
| AGTGAGTATAGAATGTTTCC+AGG | + | chr2.4:50880220-50880239 | MS.gene21960:CDS | 35.0% | |
| ATCAACACATCAGAATTTGG+TGG | + | chr2.4:50879665-50879684 | MS.gene21960:CDS | 35.0% | |
| CAAAGGACAAGAAAATACCA+TGG | + | chr2.4:50880701-50880720 | MS.gene21960:CDS | 35.0% | |
| CAATGTATGAGAATACTGAG+AGG | + | chr2.4:50880149-50880168 | MS.gene21960:CDS | 35.0% | |
| CCTGCAAACAAAATTTGAAG+TGG | - | chr2.4:50881042-50881061 | None:intergenic | 35.0% | |
| GAAACAGGATCAACAATAGA+AGG | - | chr2.4:50879866-50879885 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAGGTAAA+TGG | + | chr2.4:50880082-50880101 | MS.gene21960:CDS | 35.0% | |
| GAAGAAGAGGTAAATGGTTA+TGG | + | chr2.4:50880088-50880107 | MS.gene21960:CDS | 35.0% | |
| GCTCCAATTATCACAATCTT+TGG | - | chr2.4:50879539-50879558 | None:intergenic | 35.0% | |
| GCTTGATGCTTACTTTGAAT+CGG | + | chr2.4:50880048-50880067 | MS.gene21960:CDS | 35.0% | |
| GTCATTGTTACTGTTTCACT+AGG | + | chr2.4:50880439-50880458 | MS.gene21960:CDS | 35.0% | |
| GTTAAGCTACATTTCTGTGA+TGG | + | chr2.4:50880394-50880413 | MS.gene21960:intron | 35.0% | |
| TCACAGAAATGTAGCTTAAC+AGG | - | chr2.4:50880394-50880413 | None:intergenic | 35.0% | |
| TCATACAGTTATGTTGCAGT+TGG | + | chr2.4:50880943-50880962 | MS.gene21960:CDS | 35.0% | |
| TCTCTCACAACAATTTCTGA+AGG | + | chr2.4:50879824-50879843 | MS.gene21960:CDS | 35.0% | |
| TGTTGAGCAATCTTGTGAAT+TGG | - | chr2.4:50879740-50879759 | None:intergenic | 35.0% | |
| TTATACTTCAGCTGGTGATT+TGG | + | chr2.4:50880174-50880193 | MS.gene21960:CDS | 35.0% | |
| ! | TATCTCATGGAGTATTCTCA+AGG | + | chr2.4:50879899-50879918 | MS.gene21960:CDS | 35.0% |
| !! | CCACTTCAAATTTTGTTTGC+AGG | + | chr2.4:50881039-50881058 | MS.gene21960:CDS | 35.0% |
| AGGACAAGAAAATACCATGG+TGG | + | chr2.4:50880704-50880723 | MS.gene21960:CDS | 40.0% | |
| CCACCTGGTTTAATTCAGTT+AGG | + | chr2.4:50880304-50880323 | MS.gene21960:CDS | 40.0% | |
| CCTAACTGAATTAAACCAGG+TGG | - | chr2.4:50880307-50880326 | None:intergenic | 40.0% | |
| CTACACTTCAACAGCTTCAA+AGG | + | chr2.4:50879592-50879611 | MS.gene21960:CDS | 40.0% | |
| GCAATTGTGATTTCTTCACC+TGG | - | chr2.4:50880241-50880260 | None:intergenic | 40.0% | |
| GTTGAAGCAATTTCAAGGCT+AGG | + | chr2.4:50880553-50880572 | MS.gene21960:intron | 40.0% | |
| GTTGAAGGTGGAACAAGAAT+TGG | + | chr2.4:50879635-50879654 | MS.gene21960:CDS | 40.0% | |
| TGTGATAATTGGAGCTGGAA+TGG | + | chr2.4:50879544-50879563 | MS.gene21960:CDS | 40.0% | |
| TTGGACTGTTACCAATTCCA+TGG | - | chr2.4:50879721-50879740 | None:intergenic | 40.0% | |
| ! | AGCTTACTTCAGTGGTCTTA+GGG | + | chr2.4:50881101-50881120 | MS.gene21960:CDS | 40.0% |
| ! | ATAGCTTCTGTTTTACCACC+TGG | + | chr2.4:50880289-50880308 | MS.gene21960:CDS | 40.0% |
| ! | CTCACAACAATTTCTGAAGG+TGG | + | chr2.4:50879827-50879846 | MS.gene21960:CDS | 40.0% |
| ! | GAACTCATTGTTGTTGAAGG+TGG | + | chr2.4:50879623-50879642 | MS.gene21960:CDS | 40.0% |
| ! | GCAATTTCAAGGCTAGGTTT+TGG | + | chr2.4:50880559-50880578 | MS.gene21960:CDS | 40.0% |
| ! | TATGTTGCAGTTGGTTCAAG+TGG | + | chr2.4:50880952-50880971 | MS.gene21960:CDS | 40.0% |
| !! | GTTCTCTTATCTTGGTTTGC+TGG | + | chr2.4:50880772-50880791 | MS.gene21960:CDS | 40.0% |
| !!! | GGGACTGATCCTTTGTTTTT+AGG | + | chr2.4:50880919-50880938 | MS.gene21960:CDS | 40.0% |
| ACTCATGGAGCTTACTTCAG+TGG | + | chr2.4:50881093-50881112 | MS.gene21960:CDS | 45.0% | |
| ACTTCACTCTGACCAACCTT+GGG | + | chr2.4:50879769-50879788 | MS.gene21960:CDS | 45.0% | |
| AGATTGAGATGGGAGCTACA+TGG | + | chr2.4:50879693-50879712 | MS.gene21960:CDS | 45.0% | |
| ATAATTGGAGCTGGAATGGC+AGG | + | chr2.4:50879548-50879567 | MS.gene21960:CDS | 45.0% | |
| GAAGGTGGAACAAGAATTGG+TGG | + | chr2.4:50879638-50879657 | MS.gene21960:CDS | 45.0% | |
| GAGAGGACTTATACTTCAGC+TGG | + | chr2.4:50880166-50880185 | MS.gene21960:CDS | 45.0% | |
| GAGCTTACTTCAGTGGTCTT+AGG | + | chr2.4:50881100-50881119 | MS.gene21960:CDS | 45.0% | |
| GCTACATGGATCCATGGAAT+TGG | + | chr2.4:50879707-50879726 | MS.gene21960:CDS | 45.0% | |
| GGTGGTGACAAGATTGAGAT+GGG | + | chr2.4:50879683-50879702 | MS.gene21960:CDS | 45.0% | |
| GTTGGTCAGAGTGAAGTGAA+TGG | - | chr2.4:50879766-50879785 | None:intergenic | 45.0% | |
| ! | GTGGTCTTAGGGAAGCTAAT+AGG | + | chr2.4:50881112-50881131 | MS.gene21960:CDS | 45.0% |
| ! | TGGTGGTGACAAGATTGAGA+TGG | + | chr2.4:50879682-50879701 | MS.gene21960:CDS | 45.0% |
| !!! | GCTGTTTTTCTCATCCACCA+TGG | - | chr2.4:50880721-50880740 | None:intergenic | 45.0% |
| ATGGGAGCTACATGGATCCA+TGG | + | chr2.4:50879701-50879720 | MS.gene21960:CDS | 50.0% | |
| CACTTCACTCTGACCAACCT+TGG | + | chr2.4:50879768-50879787 | MS.gene21960:CDS | 50.0% | |
| TTTCCATCCATGCACTCCCA+AGG | - | chr2.4:50879788-50879807 | None:intergenic | 50.0% | |
| CATCCATGCACTCCCAAGGT+TGG | - | chr2.4:50879784-50879803 | None:intergenic | 55.0% | |
| ! | CAACCTTGGGAGTGCATGGA+TGG | + | chr2.4:50879782-50879801 | MS.gene21960:CDS | 55.0% |
| ! | TGACCAACCTTGGGAGTGCA+TGG | + | chr2.4:50879778-50879797 | MS.gene21960:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 50879521 | 50881176 | 50879521 | ID=MS.gene21960 |
| chr2.4 | mRNA | 50879521 | 50881176 | 50879521 | ID=MS.gene21960.t1;Parent=MS.gene21960 |
| chr2.4 | exon | 50879521 | 50880325 | 50879521 | ID=MS.gene21960.t1.exon1;Parent=MS.gene21960.t1 |
| chr2.4 | CDS | 50879521 | 50880325 | 50879521 | ID=cds.MS.gene21960.t1;Parent=MS.gene21960.t1 |
| chr2.4 | exon | 50880434 | 50880460 | 50880434 | ID=MS.gene21960.t1.exon2;Parent=MS.gene21960.t1 |
| chr2.4 | CDS | 50880434 | 50880460 | 50880434 | ID=cds.MS.gene21960.t1;Parent=MS.gene21960.t1 |
| chr2.4 | exon | 50880554 | 50881176 | 50880554 | ID=MS.gene21960.t1.exon3;Parent=MS.gene21960.t1 |
| chr2.4 | CDS | 50880554 | 50881176 | 50880554 | ID=cds.MS.gene21960.t1;Parent=MS.gene21960.t1 |
| Gene Sequence |
| Protein sequence |
