Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20018.t1 | XP_024640583.1 | 98.8 | 917 | 11 | 0 | 1 | 917 | 143 | 1059 | 0.00E+00 | 1773.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20018.t1 | Q9Z160 | 22.0 | 845 | 546 | 22 | 3 | 803 | 140 | 915 | 3.8e-35 | 151.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20018.t1 | A0A396JZ67 | 98.8 | 917 | 11 | 0 | 1 | 917 | 143 | 1059 | 0.0e+00 | 1773.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene20018 | 0.821145 | 4.72E-53 | -1.69E-46 |
| MS.gene049209 | MS.gene20018 | 0.852217 | 5.34E-61 | -1.69E-46 |
| MS.gene050084 | MS.gene20018 | 0.860707 | 1.71E-63 | -1.69E-46 |
| MS.gene050085 | MS.gene20018 | 0.85651 | 3.06E-62 | -1.69E-46 |
| MS.gene050116 | MS.gene20018 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene050213 | MS.gene20018 | 0.91131 | 7.03E-83 | -1.69E-46 |
| MS.gene050348 | MS.gene20018 | 0.807274 | 5.48E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene20018 | 0.812754 | 3.62E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene20018 | 0.813124 | 3.00E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene20018 | 0.801919 | 7.17E-49 | -1.69E-46 |
| MS.gene051020 | MS.gene20018 | 0.807746 | 4.35E-50 | -1.69E-46 |
| MS.gene051209 | MS.gene20018 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene051381 | MS.gene20018 | 0.801471 | 8.87E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene20018 | 0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene20018 | 0.869501 | 2.95E-66 | -1.69E-46 |
| MS.gene052736 | MS.gene20018 | 0.801274 | 9.73E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene20018 | 0.856346 | 3.42E-62 | -1.69E-46 |
| MS.gene052994 | MS.gene20018 | 0.810308 | 1.23E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene20018 | 0.84771 | 9.73E-60 | -1.69E-46 |
| MS.gene053486 | MS.gene20018 | 0.814469 | 1.52E-51 | -1.69E-46 |
| MS.gene054585 | MS.gene20018 | 0.82767 | 1.38E-54 | -1.69E-46 |
| MS.gene055572 | MS.gene20018 | 0.849684 | 2.76E-60 | -1.69E-46 |
| MS.gene056097 | MS.gene20018 | 0.847446 | 1.15E-59 | -1.69E-46 |
| MS.gene05615 | MS.gene20018 | 0.801011 | 1.10E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene20018 | 0.802455 | 5.56E-49 | -1.69E-46 |
| MS.gene057213 | MS.gene20018 | 0.812617 | 3.87E-51 | -1.69E-46 |
| MS.gene058292 | MS.gene20018 | 0.802896 | 4.51E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene20018 | 0.828874 | 7.05E-55 | -1.69E-46 |
| MS.gene058639 | MS.gene20018 | 0.810416 | 1.17E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene20018 | 0.857551 | 1.51E-62 | -1.69E-46 |
| MS.gene060933 | MS.gene20018 | 0.804973 | 1.67E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene20018 | 0.827235 | 1.75E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050696 | MS.gene20018 | PPI |
| MS.gene20018 | MS.gene025857 | PPI |
| MS.gene22747 | MS.gene20018 | PPI |
| MS.gene024389 | MS.gene20018 | PPI |
| MS.gene22749 | MS.gene20018 | PPI |
| MS.gene20018 | MS.gene001540 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20018.t1 | MTR_1g492710 | 98.305 | 649 | 11 | 0 | 1 | 649 | 143 | 791 | 0.0 | 1312 |
| MS.gene20018.t1 | MTR_1g492710 | 95.679 | 162 | 7 | 0 | 641 | 802 | 930 | 1091 | 3.30e-93 | 318 |
| MS.gene20018.t1 | MTR_1g492720 | 100.000 | 59 | 0 | 0 | 803 | 861 | 16 | 74 | 1.25e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20018.t1 | AT5G16300 | 62.206 | 934 | 325 | 11 | 1 | 917 | 146 | 1068 | 0.0 | 1154 |
| MS.gene20018.t1 | AT5G16300 | 60.343 | 933 | 310 | 10 | 1 | 917 | 146 | 1034 | 0.0 | 1107 |
| MS.gene20018.t1 | AT5G16300 | 59.529 | 934 | 319 | 12 | 1 | 917 | 144 | 1035 | 0.0 | 1086 |
| MS.gene20018.t1 | AT5G16300 | 61.092 | 879 | 320 | 10 | 1 | 862 | 146 | 1019 | 0.0 | 1074 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGTGTTGGACTTGTTTC+TGG | 0.129159 | 1.4:+72683908 | MS.gene20018:intron |
| CTCTGGTGGTGATTCAAATT+TGG | 0.135515 | 1.4:+72688207 | MS.gene20018:CDS |
| TACTTGGTTCTCCCAGATTT+TGG | 0.137160 | 1.4:+72685062 | MS.gene20018:CDS |
| CAATCATTGACTTGAGATTT+AGG | 0.165545 | 1.4:+72684516 | MS.gene20018:CDS |
| TTGAGGTTTGTTTGTCTTCC+TGG | 0.188667 | 1.4:-72685172 | None:intergenic |
| TCTTGTCTTAATGCCTATTT+TGG | 0.191178 | 1.4:+72684731 | MS.gene20018:CDS |
| TAAACTTGCATCAAGGTTAT+TGG | 0.209158 | 1.4:+72687266 | MS.gene20018:CDS |
| TCTAGGTTGGAAGCAGGTTT+GGG | 0.249144 | 1.4:+72690260 | MS.gene20018:intron |
| TTCTAGGTTGGAAGCAGGTT+TGG | 0.258849 | 1.4:+72690259 | MS.gene20018:intron |
| TGGAAGATGATTCTGATCTT+TGG | 0.258991 | 1.4:+72684453 | MS.gene20018:CDS |
| ACTTACTTCAGGACCAAAAT+AGG | 0.266675 | 1.4:-72684744 | None:intergenic |
| TAACATTTACTTTGCAGATA+TGG | 0.267231 | 1.4:-72684869 | None:intergenic |
| TATTCAATTCTTCCAATTCA+TGG | 0.270315 | 1.4:-72685255 | None:intergenic |
| ATTCCCACTGGCCCAAAATC+TGG | 0.279074 | 1.4:-72685074 | None:intergenic |
| GACTGAAATTCACTTTCTTC+AGG | 0.282420 | 1.4:-72684710 | None:intergenic |
| AAACAAACCTCAACTCTAAA+AGG | 0.284126 | 1.4:+72685182 | MS.gene20018:CDS |
| GTATATGTTTAGAATGGTTT+TGG | 0.284554 | 1.4:-72685033 | None:intergenic |
| GCTCATCAAGTGACAGAAAA+AGG | 0.297837 | 1.4:+72688139 | MS.gene20018:CDS |
| AATCATTGACTTGAGATTTA+GGG | 0.303397 | 1.4:+72684517 | MS.gene20018:CDS |
| CTAGTGAAACATTCTCGTTT+TGG | 0.316077 | 1.4:+72685124 | MS.gene20018:CDS |
| CCTCCAGCTTCACAATTGTT+TGG | 0.317405 | 1.4:+72684116 | MS.gene20018:CDS |
| TAGGATTCGGGAACTCGTTT+TGG | 0.320530 | 1.4:+72684433 | MS.gene20018:CDS |
| CAAAGCTTAACTTCCTCTTC+AGG | 0.325723 | 1.4:-72684152 | None:intergenic |
| GTGCTAGATCCCTCAGTCTT+GGG | 0.327177 | 1.4:-72684847 | None:intergenic |
| CTCTCATTCTCCCAGAGATA+TGG | 0.340747 | 1.4:-72688654 | None:intergenic |
| TCTGTCTTGTGTGATGTGTT+AGG | 0.343702 | 1.4:+72684002 | MS.gene20018:CDS |
| CCTACAACTTATGGATACTA+TGG | 0.344473 | 1.4:+72685305 | MS.gene20018:CDS |
| TCTGCCACAGCAGCGTTGTT+TGG | 0.353173 | 1.4:+72685214 | MS.gene20018:CDS |
| GATGGGGTGAATGTCTTCTT+TGG | 0.353422 | 1.4:-72689732 | None:intergenic |
| CTAAGAGAAGACTTTGCCTT+TGG | 0.354459 | 1.4:-72688250 | None:intergenic |
| CAAACACCGCCTGCTGTATA+AGG | 0.362242 | 1.4:-72684632 | None:intergenic |
| GTATTAGAGCCTACAACTTA+TGG | 0.363762 | 1.4:+72685296 | MS.gene20018:CDS |
| GGAAGATGATTCTGATCTTT+GGG | 0.364524 | 1.4:+72684454 | MS.gene20018:CDS |
| GTCGTGGATATCGCAAGTTT+TGG | 0.367262 | 1.4:+72683941 | MS.gene20018:CDS |
| AGTTGCCTTGGAGTAGGATT+CGG | 0.376951 | 1.4:+72684420 | MS.gene20018:CDS |
| GCCTTAACTTTGAGCACGCC+TGG | 0.378141 | 1.4:+72685379 | MS.gene20018:CDS |
| CTTATACAGCAGGCGGTGTT+TGG | 0.379413 | 1.4:+72684633 | MS.gene20018:CDS |
| TCCCTGATTCGACTTACTTC+AGG | 0.380422 | 1.4:-72684755 | None:intergenic |
| TTAACTTCCTCTTCAGGATT+GGG | 0.381330 | 1.4:-72684146 | None:intergenic |
| CAAGAATGACTTTGTAGAAA+AGG | 0.383535 | 1.4:-72684088 | None:intergenic |
| GTCCTGAAGTAAGTCGAATC+AGG | 0.384077 | 1.4:+72684753 | MS.gene20018:CDS |
| CTTAACTTCCTCTTCAGGAT+TGG | 0.385326 | 1.4:-72684147 | None:intergenic |
| AGAAGATGCAAGCCATGAAT+TGG | 0.386596 | 1.4:+72685243 | MS.gene20018:CDS |
| TGGATGACAGCTCAAGTCTT+GGG | 0.386894 | 1.4:+72689826 | MS.gene20018:CDS |
| CTTCTGCGGAGAAATCAATA+AGG | 0.388903 | 1.4:+72684324 | MS.gene20018:CDS |
| GGGTCATCATCAATCTGATC+TGG | 0.389500 | 1.4:-72690422 | None:intergenic |
| GTATTAGATTCTGAATTAGT+AGG | 0.398427 | 1.4:-72688759 | None:intergenic |
| GTGGTGATTCAAATTTGGTT+GGG | 0.399574 | 1.4:+72688212 | MS.gene20018:CDS |
| CTCAGTCTTGGGGAGGCCTT+CGG | 0.399772 | 1.4:-72684836 | None:intergenic |
| GTTGCCTTGGAGTAGGATTC+GGG | 0.401004 | 1.4:+72684421 | MS.gene20018:CDS |
| AAGAATGACTTTGTAGAAAA+GGG | 0.403222 | 1.4:-72684087 | None:intergenic |
| AAATCTCTTCAAGAAGTTCA+TGG | 0.404740 | 1.4:+72689763 | MS.gene20018:CDS |
| CTGAAGAGGAAGTTAAGCTT+TGG | 0.406834 | 1.4:+72684153 | MS.gene20018:CDS |
| TAAGAGAAGACTTTGCCTTT+GGG | 0.409198 | 1.4:-72688249 | None:intergenic |
| TTTGTCATTGATGTTCTCTC+TGG | 0.410244 | 1.4:+72688190 | MS.gene20018:CDS |
| GGAAAGTAAACAAGTTCTAC+AGG | 0.414373 | 1.4:+72684355 | MS.gene20018:CDS |
| AGATAAGCTGGAATCGGTTA+TGG | 0.414553 | 1.4:+72684187 | MS.gene20018:CDS |
| GCAGCGGCTATGTCCACATT+TGG | 0.416741 | 1.4:+72690349 | MS.gene20018:CDS |
| CTGATTAGACCGTTCTCTAA+TGG | 0.417724 | 1.4:-72688305 | None:intergenic |
| AAGCTCCTGGCCACTGCCAA+TGG | 0.422355 | 1.4:-72684300 | None:intergenic |
| CCATAGTATCCATAAGTTGT+AGG | 0.423408 | 1.4:-72685305 | None:intergenic |
| TCTTTCTCAAAAGATAAATC+TGG | 0.424373 | 1.4:+72689806 | MS.gene20018:CDS |
| GAAGAGATTTCATTTGAAGA+TGG | 0.424725 | 1.4:-72689750 | None:intergenic |
| TGCATCAAGGTTATTGGAAA+AGG | 0.425874 | 1.4:+72687272 | MS.gene20018:CDS |
| GCCTTTCTTTCCACTGAAGT+GGG | 0.425997 | 1.4:+72688112 | MS.gene20018:CDS |
| CATCTGAACATCATTCTGTT+TGG | 0.427866 | 1.4:-72684597 | None:intergenic |
| CCCAGGCGTGCTCAAAGTTA+AGG | 0.428583 | 1.4:-72685380 | None:intergenic |
| ACTGAAATTCACTTTCTTCA+GGG | 0.430090 | 1.4:-72684709 | None:intergenic |
| AAAGGTATGAACCATATCTC+TGG | 0.433620 | 1.4:+72688643 | MS.gene20018:intron |
| GGTGGTGATTCAAATTTGGT+TGG | 0.439017 | 1.4:+72688211 | MS.gene20018:CDS |
| ATCAGACTGATCTTGCTTGA+CGG | 0.443865 | 1.4:-72687115 | None:intergenic |
| GCTTGCTGCTATTGTCTCTC+AGG | 0.444950 | 1.4:+72685339 | MS.gene20018:CDS |
| AAACATATACCCTTGATACT+TGG | 0.448713 | 1.4:+72685046 | MS.gene20018:CDS |
| TCATGGAATTCAATTACAAA+TGG | 0.449641 | 1.4:+72689780 | MS.gene20018:CDS |
| CCAGCTTCACAATTGTTTGG+CGG | 0.452392 | 1.4:+72684119 | MS.gene20018:CDS |
| GAAGAATTGAATAAGACTAT+AGG | 0.452669 | 1.4:+72685265 | MS.gene20018:CDS |
| TTTGGATTCTGATGAGGGTA+AGG | 0.452923 | 1.4:+72683089 | MS.gene20018:CDS |
| CAGCTTCACAATTGTTTGGC+GGG | 0.453635 | 1.4:+72684120 | MS.gene20018:CDS |
| AAGAGATTTCATTTGAAGAT+GGG | 0.456289 | 1.4:-72689749 | None:intergenic |
| GTCATTGATGTTCTCTCTGG+TGG | 0.462199 | 1.4:+72688193 | MS.gene20018:CDS |
| TGGCTGAGATTGTCAAACTT+TGG | 0.462256 | 1.4:-72688285 | None:intergenic |
| TCAAGGGTATATGTTTAGAA+TGG | 0.463200 | 1.4:-72685039 | None:intergenic |
| GGTTTAAATACCTCCCCATC+AGG | 0.463246 | 1.4:+72688805 | MS.gene20018:CDS |
| TGAGGGTAAGGTTAAGATCT+TGG | 0.463258 | 1.4:+72683101 | MS.gene20018:CDS |
| CTGGATGACAGCTCAAGTCT+TGG | 0.465347 | 1.4:+72689825 | MS.gene20018:CDS |
| GGCCTTTCTTTCCACTGAAG+TGG | 0.465406 | 1.4:+72688111 | MS.gene20018:CDS |
| TGGAGATATTCTACCTGCTC+AGG | 0.465773 | 1.4:+72690369 | MS.gene20018:CDS |
| TCAGGTCACTCTGGGTCAGG+TGG | 0.469957 | 1.4:+72684031 | MS.gene20018:CDS |
| GATCTGAGATTGAGTTGCCT+TGG | 0.470997 | 1.4:+72684408 | MS.gene20018:CDS |
| GGTCTAATCAGTTGTTAAAC+CGG | 0.471854 | 1.4:+72688317 | MS.gene20018:CDS |
| AGAAATTTAATTGATGCCAT+TGG | 0.473388 | 1.4:+72684284 | MS.gene20018:CDS |
| AAACCGGCTTTCTCAGAGAC+TGG | 0.473732 | 1.4:+72688333 | MS.gene20018:CDS |
| TCAGATCTCGCAGCGGAGTC+GGG | 0.474276 | 1.4:+72683176 | MS.gene20018:CDS |
| TGATGGGGAGGTATTTAAAC+CGG | 0.475659 | 1.4:-72688803 | None:intergenic |
| AGGAGACCAGCTGCCTGAGC+AGG | 0.476959 | 1.4:-72690382 | None:intergenic |
| ACTTACGTAAGCCAGTCTAT+AGG | 0.479011 | 1.4:-72688358 | None:intergenic |
| AACACAATTTCTGCAGTAGT+TGG | 0.479333 | 1.4:+72684566 | MS.gene20018:CDS |
| ATTCTACCTGCTCAGGCAGC+TGG | 0.479804 | 1.4:+72690376 | MS.gene20018:CDS |
| GTCTTCTCTTAGAAGAAAGC+AGG | 0.480005 | 1.4:+72688261 | MS.gene20018:CDS |
| CATTCAGGTCACTCTGGGTC+AGG | 0.483438 | 1.4:+72684028 | MS.gene20018:CDS |
| CCGCCAAACAATTGTGAAGC+TGG | 0.485468 | 1.4:-72684119 | None:intergenic |
| ACAGGTAGTTGGAATCTTTG+AGG | 0.485788 | 1.4:+72688090 | MS.gene20018:intron |
| TGATGTGTTAGGAATCATTC+AGG | 0.486504 | 1.4:+72684013 | MS.gene20018:CDS |
| TTAATTGATGCCATTGGCAG+TGG | 0.486951 | 1.4:+72684290 | MS.gene20018:CDS |
| TTCCCACTGGCCCAAAATCT+GGG | 0.488521 | 1.4:-72685073 | None:intergenic |
| ACAAACAACATTACCTTCTC+CGG | 0.489314 | 1.4:-72683279 | None:intergenic |
| TGGCCAGGAGCTTGCTTCTG+CGG | 0.493090 | 1.4:+72684310 | MS.gene20018:CDS |
| TCTGGGAGAACCAAGTATCA+AGG | 0.496917 | 1.4:-72685056 | None:intergenic |
| AGGAATCATTCAGGTCACTC+TGG | 0.498232 | 1.4:+72684022 | MS.gene20018:CDS |
| GGTGCTAGATCCCTCAGTCT+TGG | 0.500985 | 1.4:-72684848 | None:intergenic |
| TGATGCCATTGGCAGTGGCC+AGG | 0.505848 | 1.4:+72684295 | MS.gene20018:CDS |
| CGAGAATGTTTCACTAGAGA+TGG | 0.508905 | 1.4:-72685118 | None:intergenic |
| TTCCTCTTCTTCAGCATCAG+TGG | 0.509680 | 1.4:+72683130 | MS.gene20018:CDS |
| TCTCCGCAGAAGCAAGCTCC+TGG | 0.510429 | 1.4:-72684313 | None:intergenic |
| CTCAGATCTCGCAGCGGAGT+CGG | 0.511516 | 1.4:+72683175 | MS.gene20018:CDS |
| TGGTGATTCAAATTTGGTTG+GGG | 0.513230 | 1.4:+72688213 | MS.gene20018:CDS |
| ACCGCCTGCTGTATAAGGTC+TGG | 0.515915 | 1.4:-72684627 | None:intergenic |
| ACCCACTTCAGTGGAAAGAA+AGG | 0.517882 | 1.4:-72688113 | None:intergenic |
| TTCTACAGGGGAGTCTAGAA+TGG | 0.519002 | 1.4:+72684369 | MS.gene20018:CDS |
| CGATGAATTTCAGCCGGAGA+AGG | 0.522546 | 1.4:+72683266 | MS.gene20018:CDS |
| TGCCACTGATGCTGAAGAAG+AGG | 0.523386 | 1.4:-72683132 | None:intergenic |
| TGAGGTGTTCTACAGTTCCC+CGG | 0.527851 | 1.4:+72688784 | MS.gene20018:CDS |
| GAAGAAGTTCATCGAGTTGG+AGG | 0.528343 | 1.4:+72687216 | MS.gene20018:CDS |
| GGCCCTCTAGAGGACAATGC+TGG | 0.528993 | 1.4:-72689711 | None:intergenic |
| TGCTAGATCCCTCAGTCTTG+GGG | 0.531562 | 1.4:-72684846 | None:intergenic |
| AGATTGAGTTGCCTTGGAGT+AGG | 0.532804 | 1.4:+72684414 | MS.gene20018:CDS |
| CAATATCAAACTGACCTGAT+GGG | 0.532941 | 1.4:-72688819 | None:intergenic |
| AGTGGGAATGCATCTACAGT+TGG | 0.533871 | 1.4:+72685088 | MS.gene20018:CDS |
| ATGCTAACTGATGGGCAAGT+TGG | 0.535035 | 1.4:+72690307 | MS.gene20018:CDS |
| GTGGGAATGCATCTACAGTT+GGG | 0.536592 | 1.4:+72685089 | MS.gene20018:CDS |
| GAATGTGTAAATAAGATAAG+TGG | 0.536688 | 1.4:+72684260 | MS.gene20018:CDS |
| CTTTGGGATGAGATATTTGA+GGG | 0.538918 | 1.4:+72684470 | MS.gene20018:CDS |
| TGTGAAGAAGTTCATCGAGT+TGG | 0.544251 | 1.4:+72687213 | MS.gene20018:CDS |
| AACTTTGAGCACGCCTGGGA+GGG | 0.546184 | 1.4:+72685384 | MS.gene20018:CDS |
| AGAGATTTCATTTGAAGATG+GGG | 0.546216 | 1.4:-72689748 | None:intergenic |
| GGAATCATTCAGGTCACTCT+GGG | 0.546727 | 1.4:+72684023 | MS.gene20018:CDS |
| CCTTAACTTTGAGCACGCCT+GGG | 0.547017 | 1.4:+72685380 | MS.gene20018:CDS |
| TCTTTGGGATGAGATATTTG+AGG | 0.548135 | 1.4:+72684469 | MS.gene20018:CDS |
| CTGGGATCAATGCTAACTGA+TGG | 0.549686 | 1.4:+72690298 | MS.gene20018:CDS |
| TTCTGCGGAGAAATCAATAA+GGG | 0.550295 | 1.4:+72684325 | MS.gene20018:CDS |
| TTCTGGAATCGAGGAAGTCG+TGG | 0.555193 | 1.4:+72683925 | MS.gene20018:CDS |
| AACTGTAGATGCATTCCCAC+TGG | 0.555315 | 1.4:-72685086 | None:intergenic |
| TTTCTTTCCACTGAAGTGGG+TGG | 0.557146 | 1.4:+72688115 | MS.gene20018:CDS |
| CAGGTCACTCTGGGTCAGGT+GGG | 0.557190 | 1.4:+72684032 | MS.gene20018:CDS |
| GCTCCAGCATTGTCCTCTAG+AGG | 0.560921 | 1.4:+72689708 | MS.gene20018:CDS |
| GAAATCAATAAGGGAGACAA+TGG | 0.561377 | 1.4:+72684334 | MS.gene20018:CDS |
| AATGAGATTATATATAGAGA+AGG | 0.563945 | 1.4:-72687177 | None:intergenic |
| TGTTATCGATGAATTTCAGC+CGG | 0.567099 | 1.4:+72683260 | MS.gene20018:CDS |
| AAGGTATGAACCATATCTCT+GGG | 0.568167 | 1.4:+72688644 | MS.gene20018:intron |
| GGTCATCATCAATCTGATCT+GGG | 0.568388 | 1.4:-72690421 | None:intergenic |
| TCTGCTATCTGTGATAGTCC+AGG | 0.568587 | 1.4:+72685154 | MS.gene20018:CDS |
| AAAATGTCACTTACCCTCCC+AGG | 0.568735 | 1.4:-72685397 | None:intergenic |
| TCAGTCTGATGAGAACCAAT+CGG | 0.570120 | 1.4:+72687128 | MS.gene20018:CDS |
| TGTCTTCTTTGGCCCTCTAG+AGG | 0.571932 | 1.4:-72689721 | None:intergenic |
| ATGAGCACCACCCACTTCAG+TGG | 0.574773 | 1.4:-72688122 | None:intergenic |
| CGGGATCGTTTGCTTGATCG+TGG | 0.576724 | 1.4:+72683195 | MS.gene20018:CDS |
| CTGGGAGAACCAAGTATCAA+GGG | 0.578029 | 1.4:-72685055 | None:intergenic |
| GTTAACCAGCACGGTTGATG+TGG | 0.588280 | 1.4:+72684541 | MS.gene20018:CDS |
| TTGACCAGACCTTATACAGC+AGG | 0.590278 | 1.4:+72684623 | MS.gene20018:CDS |
| TGATAGTTTATATGTCTCGA+TGG | 0.592465 | 1.4:+72684934 | MS.gene20018:CDS |
| GTTCACCACATCAACCGTGC+TGG | 0.593350 | 1.4:-72684546 | None:intergenic |
| CGAAGGCCTCCCCAAGACTG+AGG | 0.594602 | 1.4:+72684837 | MS.gene20018:CDS |
| AGAGACTGGATCCTATAGAC+TGG | 0.594900 | 1.4:+72688347 | MS.gene20018:CDS |
| TGGGATCAATGCTAACTGAT+GGG | 0.595228 | 1.4:+72690299 | MS.gene20018:CDS |
| TGCTCCAAACAACGCTGCTG+TGG | 0.597489 | 1.4:-72685218 | None:intergenic |
| GGATGACAGCTCAAGTCTTG+GGG | 0.597612 | 1.4:+72689827 | MS.gene20018:CDS |
| TTATATGTCTCGATGGAAAG+TGG | 0.599105 | 1.4:+72684941 | MS.gene20018:CDS |
| ATATATAGAGAAGGCATAGA+CGG | 0.599927 | 1.4:-72687168 | None:intergenic |
| CGGGATTCCCAATCCTGAAG+AGG | 0.601860 | 1.4:+72684139 | MS.gene20018:CDS |
| GAAGGCCTCCCCAAGACTGA+GGG | 0.602042 | 1.4:+72684838 | MS.gene20018:CDS |
| TCTTCTCTTAGAAGAAAGCA+GGG | 0.604861 | 1.4:+72688262 | MS.gene20018:CDS |
| GATCCAGTCTCTGAGAAAGC+CGG | 0.605086 | 1.4:-72688336 | None:intergenic |
| CATATCTCTGGGAGAATGAG+AGG | 0.605460 | 1.4:+72688655 | MS.gene20018:CDS |
| GTTTACTGAACAGGGATGGG+AGG | 0.606685 | 1.4:+72687086 | MS.gene20018:intron |
| TAACTTTGAGCACGCCTGGG+AGG | 0.607220 | 1.4:+72685383 | MS.gene20018:CDS |
| CTCCAGCATTGTCCTCTAGA+GGG | 0.608602 | 1.4:+72689709 | MS.gene20018:CDS |
| TCCTGAAGTAAGTCGAATCA+GGG | 0.610907 | 1.4:+72684754 | MS.gene20018:CDS |
| AAGTTTCTTAGAATCTCCGA+AGG | 0.612765 | 1.4:+72684820 | MS.gene20018:CDS |
| AATATCAAACTGACCTGATG+GGG | 0.614646 | 1.4:-72688818 | None:intergenic |
| CACAAAAGAAGAATCGTCAC+CGG | 0.618519 | 1.4:-72683976 | None:intergenic |
| CTAGGTTGGAAGCAGGTTTG+GGG | 0.621040 | 1.4:+72690261 | MS.gene20018:intron |
| GATGGGGAGGTATTTAAACC+GGG | 0.621555 | 1.4:-72688802 | None:intergenic |
| ATCAAACTGACCTGATGGGG+AGG | 0.624136 | 1.4:-72688815 | None:intergenic |
| TGGACTTGTTTCTGGAATCG+AGG | 0.625618 | 1.4:+72683916 | MS.gene20018:CDS |
| TAGATCCCTCAGTCTTGGGG+AGG | 0.625641 | 1.4:-72684843 | None:intergenic |
| AGAATGACTTTGTAGAAAAG+GGG | 0.628281 | 1.4:-72684086 | None:intergenic |
| TTCTTGTCAGAGCATCCTTG+AGG | 0.630385 | 1.4:+72684790 | MS.gene20018:CDS |
| GGAATTATCTAGTAACCCAA+AGG | 0.632091 | 1.4:+72688234 | MS.gene20018:CDS |
| TGGGAGCAGTAAAAGATGAG+AGG | 0.632209 | 1.4:-72690402 | None:intergenic |
| GAAATTCACTTTCTTCAGGG+TGG | 0.634719 | 1.4:-72684706 | None:intergenic |
| GAAAGTAAACAAGTTCTACA+GGG | 0.640980 | 1.4:+72684356 | MS.gene20018:CDS |
| TGACAGCTCAAGTCTTGGGG+TGG | 0.641795 | 1.4:+72689830 | MS.gene20018:CDS |
| ATTTAGGGAGTTAACCAGCA+CGG | 0.645100 | 1.4:+72684532 | MS.gene20018:CDS |
| AGAAACTTAACAGATCCTCA+AGG | 0.648118 | 1.4:-72684805 | None:intergenic |
| AGGTAGAATATCTCCAAATG+TGG | 0.648626 | 1.4:-72690362 | None:intergenic |
| CAATCTCAGCCATTAGAGAA+CGG | 0.648660 | 1.4:+72688296 | MS.gene20018:CDS |
| GATGGAAAGTGGTGACAAAG+AGG | 0.649981 | 1.4:+72684952 | MS.gene20018:CDS |
| AGTTCCCGAATCCTACTCCA+AGG | 0.652818 | 1.4:-72684425 | None:intergenic |
| CCAAACAATTGTGAAGCTGG+AGG | 0.661046 | 1.4:-72684116 | None:intergenic |
| ACCAGACCTTATACAGCAGG+CGG | 0.668431 | 1.4:+72684626 | MS.gene20018:CDS |
| ATTCAGAATCTAATACTCTG+AGG | 0.683698 | 1.4:+72688766 | MS.gene20018:CDS |
| TTAGAGCTCAGATCTCGCAG+CGG | 0.695588 | 1.4:+72683169 | MS.gene20018:CDS |
| AAAGTAAACAAGTTCTACAG+GGG | 0.712947 | 1.4:+72684357 | MS.gene20018:CDS |
| ATGGGGAGGTATTTAAACCG+GGG | 0.735896 | 1.4:-72688801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 72683030 | 72690435 | 72683030 | ID=MS.gene20018 |
| chr1.4 | mRNA | 72683030 | 72690435 | 72683030 | ID=MS.gene20018.t1;Parent=MS.gene20018 |
| chr1.4 | exon | 72683030 | 72683287 | 72683030 | ID=MS.gene20018.t1.exon1;Parent=MS.gene20018.t1 |
| chr1.4 | CDS | 72683030 | 72683287 | 72683030 | ID=cds.MS.gene20018.t1;Parent=MS.gene20018.t1 |
| chr1.4 | exon | 72683912 | 72685405 | 72683912 | ID=MS.gene20018.t1.exon2;Parent=MS.gene20018.t1 |
| chr1.4 | CDS | 72683912 | 72685405 | 72683912 | ID=cds.MS.gene20018.t1;Parent=MS.gene20018.t1 |
| chr1.4 | exon | 72687099 | 72687293 | 72687099 | ID=MS.gene20018.t1.exon3;Parent=MS.gene20018.t1 |
| chr1.4 | CDS | 72687099 | 72687293 | 72687099 | ID=cds.MS.gene20018.t1;Parent=MS.gene20018.t1 |
| chr1.4 | exon | 72688094 | 72688374 | 72688094 | ID=MS.gene20018.t1.exon4;Parent=MS.gene20018.t1 |
| chr1.4 | CDS | 72688094 | 72688374 | 72688094 | ID=cds.MS.gene20018.t1;Parent=MS.gene20018.t1 |
| chr1.4 | exon | 72688647 | 72688826 | 72688647 | ID=MS.gene20018.t1.exon5;Parent=MS.gene20018.t1 |
| chr1.4 | CDS | 72688647 | 72688826 | 72688647 | ID=cds.MS.gene20018.t1;Parent=MS.gene20018.t1 |
| chr1.4 | exon | 72689707 | 72689881 | 72689707 | ID=MS.gene20018.t1.exon6;Parent=MS.gene20018.t1 |
| chr1.4 | CDS | 72689707 | 72689881 | 72689707 | ID=cds.MS.gene20018.t1;Parent=MS.gene20018.t1 |
| chr1.4 | exon | 72690265 | 72690435 | 72690265 | ID=MS.gene20018.t1.exon7;Parent=MS.gene20018.t1 |
| chr1.4 | CDS | 72690265 | 72690435 | 72690265 | ID=cds.MS.gene20018.t1;Parent=MS.gene20018.t1 |
| Gene Sequence |
| Protein sequence |
