AlfalfaGEDB | MS.gene26624

M. sativa cultivar XinJiangDaYe / MS.gene26624

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005975 GO:0005984 GO:0005985 GO:0008150 GO:0008152 GO:0008194 GO:0009311 GO:0009987 GO:0016157 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0044237 GO:0044238 GO:0044262 GO:0046527 GO:0071704
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26624.t1	O65026.1	95.3	784	10	2	1	778	34	796	0.00E+00	1498.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26624.t1	O65026	95.3	784	10	2	1	778	34	796	0.0e+00	1498.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26624.t1	A4ZUE4	94.9	784	13	2	1	778	33	795	0.0e+00	1492.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene26624	-0.819348	1.22E-52	-1.69E-46
MS.gene049170	MS.gene26624	-0.813142	2.97E-51	-1.69E-46
MS.gene049265	MS.gene26624	0.834807	2.42E-56	-1.69E-46
MS.gene049425	MS.gene26624	0.800094	1.69E-48	-1.69E-46
MS.gene050060	MS.gene26624	-0.831417	1.69E-55	-1.69E-46
MS.gene050133	MS.gene26624	0.808384	3.18E-50	-1.69E-46
MS.gene050397	MS.gene26624	-0.846019	2.82E-59	-1.69E-46
MS.gene050400	MS.gene26624	-0.815196	1.05E-51	-1.69E-46
MS.gene050404	MS.gene26624	-0.808512	2.99E-50	-1.69E-46
MS.gene050406	MS.gene26624	-0.830844	2.34E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 214 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTGTTGCCTCTTTGT+TGG	0.493208	8.4:-10382535	MS.gene26624:CDS
AAAGAAGCTCTTCGATTTCA+GGG	0.464646	8.4:+10381953	None:intergenic
AACGGTCGCGGTCGCGATCG+CGG	0.558009	8.4:-10381279	MS.gene26624:CDS
AAGAAGAACTTGTTGATGGA+AGG	0.539698	8.4:-10384202	MS.gene26624:intron
AAGATCAGCGGTAAATTGGC+AGG	0.537258	8.4:+10382311	None:intergenic
AAGCTGACTGATGGTGCATT+TGG	0.442904	8.4:-10384465	MS.gene26624:CDS
AAGGCTTGAAGCAAAGGGAA+AGG	0.545090	8.4:-10384550	MS.gene26624:CDS
AAGTAGTTCCGACTGCATCG+GGG	0.761859	8.4:+10382865	None:intergenic
AAGTTCAACATTGTATCTCC+AGG	0.532060	8.4:-10382036	MS.gene26624:CDS
AATATAGGTTGTTTACATCT+TGG	0.337487	8.4:-10383117	MS.gene26624:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGTCCATGTATACCTT+AGG	+	chr8.4:10384428-10384447	None:intergenic	30.0%
AACCACAAAAATACAAGAAC+AGG	+	chr8.4:10384023-10384042	None:intergenic	30.0%
ACAAAGAAAACTATGGAACA+TGG	+	chr8.4:10384357-10384376	None:intergenic	30.0%
ACCACAAAAATACAAGAACA+GGG	+	chr8.4:10384022-10384041	None:intergenic	30.0%
ATATCTAGAAACTTACACTG+AGG	-	chr8.4:10381578-10381597	MS.gene26624:CDS	30.0%
ATCAAAATAAGTTACCTGTG+TGG	+	chr8.4:10379880-10379899	None:intergenic	30.0%
ATGACAACATTAAAGACCAT+TGG	+	chr8.4:10381013-10381032	None:intergenic	30.0%
ATTTCTTTCTCAGCGTTAAA+AGG	-	chr8.4:10384168-10384187	MS.gene26624:intron	30.0%
CAAAATGTTTGGAAAATGTG+AGG	+	chr8.4:10381623-10381642	None:intergenic	30.0%
CACTAAATATGAGTTACCAA+AGG	+	chr8.4:10380509-10380528	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	10379758	10384569	10379758	ID=MS.gene26624
chr8.4	mRNA	10379758	10384569	10379758	ID=MS.gene26624.t1;Parent=MS.gene26624
chr8.4	exon	10384443	10384569	10384443	ID=MS.gene26624.t1.exon1;Parent=MS.gene26624.t1
chr8.4	CDS	10384443	10384569	10384443	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10384203	10384354	10384203	ID=MS.gene26624.t1.exon2;Parent=MS.gene26624.t1
chr8.4	CDS	10384203	10384354	10384203	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10383923	10384115	10383923	ID=MS.gene26624.t1.exon3;Parent=MS.gene26624.t1
chr8.4	CDS	10383923	10384115	10383923	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10383231	10383566	10383231	ID=MS.gene26624.t1.exon4;Parent=MS.gene26624.t1
chr8.4	CDS	10383231	10383566	10383231	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10383037	10383132	10383037	ID=MS.gene26624.t1.exon5;Parent=MS.gene26624.t1
chr8.4	CDS	10383037	10383132	10383037	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10382728	10382901	10382728	ID=MS.gene26624.t1.exon6;Parent=MS.gene26624.t1
chr8.4	CDS	10382728	10382901	10382728	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10382512	10382628	10382512	ID=MS.gene26624.t1.exon7;Parent=MS.gene26624.t1
chr8.4	CDS	10382512	10382628	10382512	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10382252	10382418	10382252	ID=MS.gene26624.t1.exon8;Parent=MS.gene26624.t1
chr8.4	CDS	10382252	10382418	10382252	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10381925	10382149	10381925	ID=MS.gene26624.t1.exon9;Parent=MS.gene26624.t1
chr8.4	CDS	10381925	10382149	10381925	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10381213	10381821	10381213	ID=MS.gene26624.t1.exon10;Parent=MS.gene26624.t1
chr8.4	CDS	10381213	10381821	10381213	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1
chr8.4	exon	10379758	10379896	10379758	ID=MS.gene26624.t1.exon11;Parent=MS.gene26624.t1
chr8.4	CDS	10379758	10379896	10379758	ID=cds.MS.gene26624.t1;Parent=MS.gene26624.t1

Gene Sequence

>MS.gene26624

GCTTGAAGCAAAGGGAAAGGGAATTTTGCAACACCATCAAGTGATTGCTGAGTTTGAGGAAATTCCTGAAGAGAGTAGACAGAAGCTGACTGATGGTGCATTTGGTGAAGTTTTGAGATCCACACAGGTAACTTATTTTGATCATTATGTGTATTATATAATTCATATGCTTTGTTGATTTTTTCTGAAATCAATATTTTTTTATGATTTTTTAGGAAGCAATAGTTTTGCCACCATGGGTTGCACTTGCTGTTCGTCCAAGGCCAGGTATTTGGGAGTATCTGAGAGTGAATGTGCATGCTCTTGTTGTCGAAAATTTGCAACCTGCTGAGTTTCTCAAATTCAAAGAAGAACTTGTTGATGGAAGGTAATTAATCAGTAAATTAAGGTTTTTATTAGTTGTATTTTTACACAAATTATGAATGGTTCTGATTCTGTCTCACTTTTATTGCAGTGCTAATGGAAACTTTGTGCTTGAGTTGGACTTTGAACCATTTACTGCATCTTTCCCTCGTCCTACTCTCAACAAGTCAATTGGAAATGGTGTGCACTTCCTTAATCGCCATCTTTCTGCTAAACTCTTCCATGACAAGGAGAGTTTACATCCACTTTTGGAATTTCTCAGACTTCACAGCTACAAGGGAAAGGTATCTATTTTTTTCATTTTGCATGGTAGTGAGAATTGCTTGCTTGTTTATCATTCAAATTAGAGTAGTGATTGGCATTGTTAATTATCAATTTTAGACCTCCTTTGGTAACTCATATTTAGTGAAAACTAATAGACCTTGAATATCATTCATGTTTCAACTATGTCTAATAACCAGATCTGAGGTACAAATTCAGTATGCTGTATTGCATGTTTGGATTGACTGTGAGTTTGGCAGAATCACAGTGTGTCATCATGATTTTGGCAAACTAATTGTTGAATTGAATGAAACATGTTCTCTTAGGATCTTGTGTATCTGCTTTGATTTCACTGAAATGTGTTTTTTTACATATGCAGACATTGATGTTGAATGACAGAATTCAAAACCCCGATTCTCTTCAACATGTTCTGAGGAAAGCTGAAGAGTATCTAAGCACAATTGATCCTGAAACACCATACTCAGAATTTGAACACAGGTTCCAGGAGATTGGTTTGGAGAGAGGCTGGGGAGACACCGCAGAGCGCGTCCTCGAGTCTATCCAACTTCTCTTGGATCTTCTAGAGGCTCCTGACCCTTGCACCCTTGAGTCTTTCCTTGATAGAATCCCAATGGTCTTTAATGTTGTCATCCTTTCTCCTCATGGTTACTTTGCTCAAGATGATGTCTTGGGATACCCTGATACTGGAGGCCAGGTTAGTTTAACATGAAATGTTTTTGTTTGTCTGTGAGAATCTCATACTTTTATACCTATCAAGTTTAACTCACATGCTTTACTTGATCTTCAATATAGGTTGTTTACATCTTGGATCAAGTTCGTGCCTTGGAGAGCGAGATGCTCAGTCGCATTAAGAAACAAGGCTTGGATATCATCCCTCGCATTCTCATTGTAAGTCATAATATAGTACTCTCTTGGTTTCAAATATAAGCAAAAAATTCTATGAATTTAGCTTACTTGTATATTGTGTATGGATAATTCTCTAATTGGTTGGTACTTGTGGATGTATGTTCTTATTAAATACAGATCACTCGTCTTCTCCCCGATGCAGTCGGAACTACTTGTGGCCAACGGCTTGAAAAGGTCTATGGAACTGAGCATTGCCACATTCTTCGAGTTCCCTTCAGAGATGAGAAGGGAATTGTTCGCAAGTGGATCTCACGATTTGAAGTCTGGCCATATCTAGAAACTTACACTGAGGTGTTATTTTGATCCATAATCCTCACATTTTCCAAACATTTTGATGTTTTTTTAATTGTAATCTAACATTCAGTTCAATTATATGTATCTTGCAATTAGGATGTTGCTCATGAGCTTGCCAAAGAGTTGCAAAGCAAACCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTGGCACATAAATTAGGTGTCACTCAGGTTTGTCCACATGAACAATTATACTAGTTCAAAGTTGTAACATTTTGTTGACTATGCTTTGGTCTAATGTTTCCCCTTTTTCCATTATTATAGTGTACCATTGCTCATGCACTCGAGAAGACTAAGTACCCCGAATCCGATATTTACTGGAAAAAATTCGAAGAGAAGTATCACTTCTCCTGCCAATTTACCGCTGATCTTTTCGCAATGAACCACACAGATTTCATCATCACTAGTACCTTCCAAGAGATTGCTGGAAGGTGTGATATCCCTTCATTGTTCACTATGTCTGTTCCTTTTTTTCGTAATTTTTATTTCTTTGATTAACAGAGTCACTAAAATTGTTGTATTTTCTTGTACAGCAAGGATAAGGTTGGACAGTATGAGAGTCACACTGCCTTTACTCTTCCAGGACTCTACCGTGTCGTGCACGGTATTGATGTCTTTGATCCAAAGTTCAACATTGTATCTCCAGGAGCTGATCAGACCATTTACTTCCCTTACACCGAAACTAGCCGCCGATTGACATCCTTCTACCCTGAAATCGAAGAGCTTCTTTACAGCTCAGTTGAGAATGAAGAGCACATGTGAGTTTCTCTCCATCTCATTTTCTTTATTTCCTTTAATATTATTGTTGTTGTCATTGTCGCATGAAACATTATCTAAACGAATGGGATTCAACTGTAACAGATGTGTGCTGAAGGACCGCAACAAGCCAATTATCTTCACCATGGCAAGGTTGGACCGTGTGAAGAACATTACAGGACTTGTGGAGTGGTACGGCAAGAATGCCAAGCTTCGTGAGTTGGTGAACCTTGTTGTTGTGGCCGGAGACAGGAGGAAGGAGTCAAAGGACTTGGAAGAGATAGCTGAGATGAAGAAGATGTATGGCCTAATTGAGACCTACAAGTTGAATGGCCAATTCAGATGGATTTCCTCTCAGATGAACCGTGTCAGAAACGGAGAGCTGTACCGTGTGATTTGTGACACCAAGGGAGCTTTCGTGCAACCTGCCGTGTACGAAGCTTTCGGTTTGACAGTTGTTGAGGCCATGGCTACTGGATTGCCAACATTTGCAACTCTTAATGGTGGCCCTGCTGAGATCATTGTCCATGGCAAATCTGGATTCCACATTGATCCTTACCATGGTGACCGCGCTGCTGATCTCCTTGTTGAATTCTTTGAGAAGGTCAAAGCCAAGGTTCTAAAAAACGGTCGCGGTCGCGATCGCGGTCGCGTTAAGGTTGTCGCGATTTCGGCTGTAACGGACGCTGCGATACAAATAACGGTCTTCGCGGTGTGAATTAATCAAAACGTTTCACAAAACGTATTAAAACTATTTATATTATCATATAATGTATAATAACTTAGATTAATACTTTTTTCCCATAATTATAACATGTTTAAAGTAAATATAATAATAAAAATAGACTACATTTAGTAAAGATAGAGTGTTTGACAGATTGAAAAGAAATTAACTAATAAATAACTACTCATAACATATCTTTAAACAAAGTTCATGATCTAACATCAAAGTCCCAATTTTTTCTCTAAAATTTCATCTAATATTTGTTACCTAAATACTCAAATTAAGAGTGTCAATTTAAAATTACCTTGAACTTAAATAAGAGATGAATGCACACTTTTTTTTTTTGAGTTTAATAAATAAATATATGAATAAACAAATAAACCATCTAAAAGTAATTATTAATTTCCTTCAAAAAAAAGTAATTATTAATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATTGATTATTATTGAATGAAGAGTGAAGTTGTGTGTGTGCATACGTGTGTGTATTGTGATAACAAACCTTATTCGCTCAAAAAACAAAAAATACTTATCACTTATCACAAACCTGCCTAGGAGACGCAAGCAGAAGTGCAGAACGGCAAGCAGAGAGACGCAAGCAGAAGTGCAGAACGAACAAAGAAACGCAAGCAGAACGAACAAAGAATCGCAAATCGCAAATCGCAAAAGAATCACACACCAGAATCGCAAGCAGAACGAACACCAGAATCGCAAATCGCAAGCAGGAAGGAAGGAACAAAGAATCACACCACCAAAGAAGAGAAGTAATTGATTTGTGTAAAAAAGATTTGAGATGTGGTACAAAAGATTTGAGATGCCTGGCTGGTACAAAAGATAAGATTCCTCTTCCCCTGTTCTTGTATTTTTGTGGTTTTTTTTTTTAATATGAGATTTGAGATGCCTGTCCTTCTTCTCCTGTTCTTCTGTTTCGCGGGCGTAACGGCATTTCGCGGTCGTAACGGCGTTCCGTAACGGCCGTAACGGCGTTTTTTCTGTGAATTTCTTTCTCAGCGTTAAAAGGGGCAAAAACGGTAACGGCCACTGCCGATACCGATTTGTAACGGCCGTTTTTGCGGTAACGTCCCGTTTTTTAAAACCTTGGTCAAAGCTGATCCATCTCACTGGGACAAGATCTCTCAAGGTGGTCTCCAACGTATTGAAGAGAAGTAAGCTACTTACTATAACCATGTTCCATAGTTTTCTTTGTTTAGGTTGTGTGAATTGTGATTAACTTGTTTTATTTTTTGGTTTGCTTCCTAAGGTATACATGGACAATTTACTCTCAGAGGCTTCTTACACTCACTGGTGTCTATGGCTTCTGGAAGCATGTGTCTAACCTCGACCGTCTTGAGAGCCGCCGCTATCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTG

Protein sequence

>MS.gene26624.t1

AUSKGKGNFATPSSDCUVUGNSUREUTEADUWCIWUSFEIHTGSNSFATMGCTCCSSKARYLGVSESECACSCCRKFATCUVSQIQRRTCUWKCUWKLCAUVGLUTIYCIFPSSYSQQVNWKWCALPUSPSFCUTLPUQGEFTSTFGISQTSQLQGKDIDVEUQNSKPRFSSTCSEESURVSKHNUSUNTILRIUTQVPGDWFGERLGRHRRARPRVYPTSLGSSRGSUPLHPUVFPUUNPNGLUCCHPFSSWLLCSRUCLGIPUYWRPGCLHLGSSSCLGERDAQSHUETRLGYHPSHSHYHSSSPRCSRNYLWPTAUKGLWNUALPHSSSSLQRUEGNCSQVDLTIUSLAISRNLHUGCCSUACQRVAKQTRSDCWKLQUWKHCCLFVGTUIRCHSVYHCSCTREDUVPRIRYLLEKIRREVSLLLPIYRUSFRNEPHRFHHHUYLPRDCWKQGUGWTVUESHCLYSSRTLPCRARYUCLUSKVQHCISRSUSDHLLPLHRNUPPIDILLPUNRRASLQLSUEURAHMCAEGPQQANYLHHGKVGPCEEHYRTCGVVRQECQASUVGEPCCCGRRQEEGVKGLGRDSUDEEDVWPNUDLQVEWPIQMDFLSDEPCQKRRAVPCDLUHQGSFRATCRVRSFRFDSCUGHGYWIANICNSUWWPCUDHCPWQIWIPHUSLPWUPRCUSPCUILUEGQSQGSKKRSRSRSRSRUGCRDFGCNGRCDTNNGLRGVYMDNLLSEASYTHWCLWLLEACVUPRPSUEPPLSUDVLCSQVPQI