Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62631.t1 | XP_003631048.1 | 83.3 | 299 | 47 | 1 | 1 | 299 | 1 | 296 | 3.00E-121 | 444.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62631.t1 | G7LCF7 | 83.3 | 299 | 47 | 1 | 1 | 299 | 1 | 296 | 2.1e-121 | 444.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene62631 | -0.805803 | 1.12E-49 | -1.69E-46 |
| MS.gene050133 | MS.gene62631 | 0.805468 | 1.32E-49 | -1.69E-46 |
| MS.gene050811 | MS.gene62631 | 0.841167 | 5.60E-58 | -1.69E-46 |
| MS.gene05081 | MS.gene62631 | -0.840364 | 9.09E-58 | -1.69E-46 |
| MS.gene051244 | MS.gene62631 | -0.818065 | 2.38E-52 | -1.69E-46 |
| MS.gene051552 | MS.gene62631 | 0.812745 | 3.63E-51 | -1.69E-46 |
| MS.gene051749 | MS.gene62631 | 0.837824 | 4.14E-57 | -1.69E-46 |
| MS.gene051750 | MS.gene62631 | 0.808559 | 2.92E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene62631 | -0.815175 | 1.06E-51 | -1.69E-46 |
| MS.gene051940 | MS.gene62631 | 0.8085 | 3.00E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene62631 | -0.804118 | 2.52E-49 | -1.69E-46 |
| MS.gene052289 | MS.gene62631 | 0.849386 | 3.34E-60 | -1.69E-46 |
| MS.gene05240 | MS.gene62631 | 0.801405 | 9.15E-49 | -1.69E-46 |
| MS.gene052469 | MS.gene62631 | -0.817807 | 2.72E-52 | -1.69E-46 |
| MS.gene053330 | MS.gene62631 | -0.810094 | 1.37E-50 | -1.69E-46 |
| MS.gene054343 | MS.gene62631 | -0.820113 | 8.14E-53 | -1.69E-46 |
| MS.gene054344 | MS.gene62631 | -0.811638 | 6.34E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene62631 | 0.855829 | 4.85E-62 | -1.69E-46 |
| MS.gene055370 | MS.gene62631 | -0.808551 | 2.93E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene62631 | -0.800338 | 1.51E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene62631 | -0.802155 | 6.42E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene62631 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene056351 | MS.gene62631 | -0.804383 | 2.22E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene62631 | 0.802191 | 6.31E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene62631 | 0.802708 | 4.94E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene62631 | -0.836069 | 1.16E-56 | -1.69E-46 |
| MS.gene056664 | MS.gene62631 | -0.80602 | 1.01E-49 | -1.69E-46 |
| MS.gene057020 | MS.gene62631 | 0.820128 | 8.08E-53 | -1.69E-46 |
| MS.gene057196 | MS.gene62631 | -0.819849 | 9.36E-53 | -1.69E-46 |
| MS.gene057332 | MS.gene62631 | -0.855351 | 6.69E-62 | -1.69E-46 |
| MS.gene057658 | MS.gene62631 | -0.802643 | 5.09E-49 | -1.69E-46 |
| MS.gene058418 | MS.gene62631 | 0.808427 | 3.11E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene62631 | -0.833279 | 5.84E-56 | -1.69E-46 |
| MS.gene058838 | MS.gene62631 | -0.832388 | 9.73E-56 | -1.69E-46 |
| MS.gene059023 | MS.gene62631 | -0.808958 | 2.40E-50 | -1.69E-46 |
| MS.gene059061 | MS.gene62631 | 0.863703 | 2.06E-64 | -1.69E-46 |
| MS.gene05914 | MS.gene62631 | -0.80554 | 1.27E-49 | -1.69E-46 |
| MS.gene059512 | MS.gene62631 | -0.853915 | 1.74E-61 | -1.69E-46 |
| MS.gene059855 | MS.gene62631 | 0.846564 | 2.01E-59 | -1.69E-46 |
| MS.gene060087 | MS.gene62631 | 0.802697 | 4.96E-49 | -1.69E-46 |
| MS.gene061231 | MS.gene62631 | -0.862514 | 4.80E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62631.t1 | MTR_8g106580 | 98.997 | 299 | 0 | 1 | 1 | 299 | 1 | 296 | 0.0 | 602 |
| MS.gene62631.t1 | MTR_6g081930 | 67.105 | 304 | 85 | 4 | 1 | 299 | 1 | 294 | 7.25e-139 | 394 |
| MS.gene62631.t1 | MTR_2g101870 | 43.910 | 312 | 158 | 8 | 1 | 299 | 2 | 309 | 2.92e-78 | 240 |
| MS.gene62631.t1 | MTR_4g075730 | 43.939 | 330 | 135 | 10 | 1 | 298 | 6 | 317 | 4.61e-72 | 225 |
| MS.gene62631.t1 | MTR_6g087880 | 40.498 | 321 | 154 | 10 | 1 | 299 | 1 | 306 | 1.12e-65 | 208 |
| MS.gene62631.t1 | MTR_0154s0010 | 57.037 | 135 | 58 | 0 | 165 | 299 | 1 | 135 | 5.87e-54 | 172 |
| MS.gene62631.t1 | MTR_4g075730 | 43.590 | 234 | 84 | 9 | 1 | 204 | 6 | 221 | 2.46e-39 | 138 |
| MS.gene62631.t1 | MTR_8g086610 | 34.507 | 284 | 155 | 8 | 20 | 298 | 21 | 278 | 2.36e-36 | 131 |
| MS.gene62631.t1 | MTR_3g037650 | 30.961 | 281 | 169 | 9 | 29 | 299 | 8 | 273 | 7.26e-36 | 130 |
| MS.gene62631.t1 | MTR_4g094800 | 53.043 | 115 | 35 | 6 | 1 | 96 | 12 | 126 | 2.72e-20 | 86.3 |
| MS.gene62631.t1 | MTR_3g033530 | 25.566 | 309 | 171 | 9 | 25 | 281 | 28 | 329 | 8.56e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62631.t1 | AT1G45688 | 56.213 | 338 | 107 | 4 | 1 | 297 | 1 | 338 | 6.97e-124 | 358 |
| MS.gene62631.t1 | AT5G42860 | 56.832 | 322 | 108 | 5 | 1 | 297 | 1 | 316 | 1.15e-111 | 326 |
| MS.gene62631.t1 | AT1G45688 | 60.084 | 238 | 71 | 4 | 1 | 214 | 1 | 238 | 8.50e-94 | 278 |
| MS.gene62631.t1 | AT4G35170 | 37.037 | 297 | 169 | 7 | 14 | 297 | 6 | 297 | 6.46e-58 | 188 |
| MS.gene62631.t1 | AT2G41990 | 40.836 | 311 | 153 | 9 | 1 | 296 | 1 | 295 | 2.01e-55 | 181 |
| MS.gene62631.t1 | AT3G24605 | 35.616 | 292 | 156 | 8 | 1 | 277 | 3 | 277 | 3.17e-43 | 150 |
| MS.gene62631.t1 | AT3G24600 | 35.714 | 308 | 178 | 9 | 1 | 296 | 2 | 301 | 4.18e-40 | 142 |
| MS.gene62631.t1 | AT3G08490 | 25.357 | 280 | 177 | 10 | 26 | 296 | 11 | 267 | 2.01e-13 | 69.3 |
Find 66 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCCTTGCTTTCATTCT+TGG | 0.127415 | 4.2:+759950 | MS.gene62631:CDS |
| AGCTTATGTGCTTGGGAAAT+TGG | 0.250083 | 4.2:+760801 | MS.gene62631:CDS |
| TGTTGTTGTTGTTGAGTTTC+CGG | 0.258136 | 4.2:-759823 | None:intergenic |
| TCCTATTCAGAAATCGTAAT+TGG | 0.272853 | 4.2:+760299 | MS.gene62631:CDS |
| GAAACCCCATGTCATGATTA+AGG | 0.315871 | 4.2:+760030 | MS.gene62631:CDS |
| GCCAATTACGATTTCTGAAT+AGG | 0.334846 | 4.2:-760300 | None:intergenic |
| AATCATGACATGGGGTTTCA+TGG | 0.345102 | 4.2:-760026 | None:intergenic |
| CCATTCCACTTCTCAATCAT+AGG | 0.363070 | 4.2:-760914 | None:intergenic |
| ATCAATTTCTTTCCAAGGCT+TGG | 0.363690 | 4.2:-759864 | None:intergenic |
| GAGAGAAAAGAGTGAACAAA+AGG | 0.373174 | 4.2:-759979 | None:intergenic |
| CAAACCAAAATACTACAAAA+AGG | 0.374910 | 4.2:+760825 | MS.gene62631:CDS |
| GTTGTTGTTGTTGAGTTTCC+GGG | 0.380866 | 4.2:-759822 | None:intergenic |
| TTTAATGGCACTGGTAAAGT+TGG | 0.388529 | 4.2:-760754 | None:intergenic |
| GAACCCATTGGGCTGATAAC+AGG | 0.388750 | 4.2:-759758 | None:intergenic |
| AGATCTAGAGCTTATGTGCT+TGG | 0.422698 | 4.2:+760793 | MS.gene62631:CDS |
| ATCATTCTCTTTCTCGTCGT+TGG | 0.425007 | 4.2:+759927 | MS.gene62631:CDS |
| GATCTAGAGCTTATGTGCTT+GGG | 0.431536 | 4.2:+760794 | MS.gene62631:CDS |
| TCTTCCTCTAGCCGTTTCTC+TGG | 0.434741 | 4.2:+759797 | MS.gene62631:CDS |
| CTAGCCGTTTCTCTGGTTCC+CGG | 0.451437 | 4.2:+759804 | MS.gene62631:CDS |
| AGTAGAATGAAAGGAGGTAG+TGG | 0.462601 | 4.2:-759735 | None:intergenic |
| GCTAGTCTTAGCAGCACAAC+TGG | 0.471971 | 4.2:+760727 | MS.gene62631:CDS |
| ACTCCTGTTATCAGCCCAAT+GGG | 0.481587 | 4.2:+759755 | MS.gene62631:CDS |
| ATTACATCAATTTCTTTCCA+AGG | 0.493552 | 4.2:-759869 | None:intergenic |
| ATTAGTGAGTGTGGCAGTGA+TGG | 0.497703 | 4.2:+760675 | MS.gene62631:CDS |
| TAGCACCACTTCCATACAAT+GGG | 0.499784 | 4.2:-760708 | None:intergenic |
| GGAAGCAAGATCCCATTGTA+TGG | 0.504734 | 4.2:+760697 | MS.gene62631:CDS |
| TCCAAGGCTTGGTGTTACTA+CGG | 0.507244 | 4.2:-759853 | None:intergenic |
| ATCATGACATGGGGTTTCAT+GGG | 0.508587 | 4.2:-760025 | None:intergenic |
| TCTGAATAGGATAGATCTAA+AGG | 0.513188 | 4.2:-760287 | None:intergenic |
| AATGAGGAGGAGAACCCATT+GGG | 0.513468 | 4.2:-759769 | None:intergenic |
| TACTCCTGTTATCAGCCCAA+TGG | 0.518448 | 4.2:+759754 | MS.gene62631:CDS |
| CAAGCTGGTTCAGATGCAAC+GGG | 0.522817 | 4.2:+760173 | MS.gene62631:CDS |
| TGGTTCAGATGCAACGGGTG+TGG | 0.528116 | 4.2:+760178 | MS.gene62631:CDS |
| AAGATCCCATTGTATGGAAG+TGG | 0.539938 | 4.2:+760703 | MS.gene62631:CDS |
| TCAGAAATCGTAATTGGCAC+TGG | 0.540742 | 4.2:+760305 | MS.gene62631:CDS |
| TTAGTGAGTGTGGCAGTGAT+GGG | 0.543651 | 4.2:+760676 | MS.gene62631:CDS |
| CATAGGTGCAAGACTTCTTG+AGG | 0.543718 | 4.2:-760897 | None:intergenic |
| ATTGATGTAATTGAAGAAGA+AGG | 0.546086 | 4.2:+759881 | MS.gene62631:CDS |
| ACCGTAGTAACACCAAGCCT+TGG | 0.548483 | 4.2:+759852 | MS.gene62631:CDS |
| AAAAGCCAAGAATGAAAGCA+AGG | 0.553973 | 4.2:-759955 | None:intergenic |
| ATAGGTGCAAGACTTCTTGA+GGG | 0.555809 | 4.2:-760896 | None:intergenic |
| CTAGAGGAAGAGTGAGAATG+AGG | 0.556981 | 4.2:-759785 | None:intergenic |
| TCAAGCTGGTTCAGATGCAA+CGG | 0.562028 | 4.2:+760172 | MS.gene62631:CDS |
| GAATGAGGAGGAGAACCCAT+TGG | 0.564529 | 4.2:-759770 | None:intergenic |
| GGACTTTGAACATAGTATGC+TGG | 0.578237 | 4.2:-759692 | None:intergenic |
| GATAACAGGAGTAGAATGAA+AGG | 0.579520 | 4.2:-759744 | None:intergenic |
| GAGCATGTTAGAGTTCAAGC+TGG | 0.583891 | 4.2:+760158 | MS.gene62631:CDS |
| AACAGGAGTAGAATGAAAGG+AGG | 0.584271 | 4.2:-759741 | None:intergenic |
| GTATACCTTAATCATGACAT+GGG | 0.588377 | 4.2:-760035 | None:intergenic |
| GAGGAAGAGTGAGAATGAGG+AGG | 0.592438 | 4.2:-759782 | None:intergenic |
| GTTCAAAGTCCATCCCATGA+TGG | 0.593197 | 4.2:+759704 | MS.gene62631:CDS |
| GAAATTCACTTATCGTAACA+AGG | 0.596007 | 4.2:+760232 | MS.gene62631:CDS |
| GTTTCCGGGAACCAGAGAAA+CGG | 0.599995 | 4.2:-759808 | None:intergenic |
| AGTATACCTTAATCATGACA+TGG | 0.609619 | 4.2:-760036 | None:intergenic |
| CTAGCACCACTTCCATACAA+TGG | 0.615096 | 4.2:-760709 | None:intergenic |
| GAGTCAAAGATTAGTGAGTG+TGG | 0.625033 | 4.2:+760666 | MS.gene62631:CDS |
| AAGGCTTGGTGTTACTACGG+TGG | 0.628950 | 4.2:-759850 | None:intergenic |
| TGGGTCTGCTAGCACCCCAA+AGG | 0.632476 | 4.2:-760006 | None:intergenic |
| ACATAGTATGCTGGTCGACG+AGG | 0.635101 | 4.2:-759683 | None:intergenic |
| ATTCACTGTAATCATATCAG+TGG | 0.649253 | 4.2:-760201 | None:intergenic |
| ATAGGATAGATCTAAAGGTG+TGG | 0.651020 | 4.2:-760282 | None:intergenic |
| GGAACCAGAGAAACGGCTAG+AGG | 0.666320 | 4.2:-759801 | None:intergenic |
| AAATTCACTTATCGTAACAA+GGG | 0.671507 | 4.2:+760233 | MS.gene62631:CDS |
| TATACCTTAATCATGACATG+GGG | 0.686791 | 4.2:-760034 | None:intergenic |
| TCGACGAGGAGATCTTGTTG+TGG | 0.700688 | 4.2:-759669 | None:intergenic |
| GCATACAAAGACAGACTCAG+AGG | 0.705617 | 4.2:+759625 | MS.gene62631:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTGTTATGTCAAAT+GGG | + | chr4.2:760087-760106 | MS.gene62631:intron | 15.0% |
| !!! | CTTTTAATTGTTATGTCAAA+TGG | + | chr4.2:760086-760105 | MS.gene62631:intron | 20.0% |
| ! | AAATTCACTTATCGTAACAA+GGG | + | chr4.2:760233-760252 | MS.gene62631:CDS | 25.0% |
| ! | ATATGATTATTGTGTGAACT+CGG | - | chr4.2:760441-760460 | None:intergenic | 25.0% |
| ! | ATTACATCAATTTCTTTCCA+AGG | - | chr4.2:759872-759891 | None:intergenic | 25.0% |
| ! | ATTGATGTAATTGAAGAAGA+AGG | + | chr4.2:759881-759900 | MS.gene62631:CDS | 25.0% |
| ! | CAAACCAAAATACTACAAAA+AGG | + | chr4.2:760825-760844 | MS.gene62631:CDS | 25.0% |
| !! | ATCTCAAAGCTCAATTTTAA+TGG | - | chr4.2:760772-760791 | None:intergenic | 25.0% |
| !! | TGAACCTTTTTGTAGTATTT+TGG | - | chr4.2:760832-760851 | None:intergenic | 25.0% |
| !!! | AACAGAAACATTGATTTTCT+TGG | - | chr4.2:760875-760894 | None:intergenic | 25.0% |
| !!! | ACAGAAACATTGATTTTCTT+GGG | - | chr4.2:760874-760893 | None:intergenic | 25.0% |
| !!! | TGAAGAAGTTTTATCAATCA+AGG | + | chr4.2:760641-760660 | MS.gene62631:CDS | 25.0% |
| AGTATACCTTAATCATGACA+TGG | - | chr4.2:760039-760058 | None:intergenic | 30.0% | |
| ATTCACTGTAATCATATCAG+TGG | - | chr4.2:760204-760223 | None:intergenic | 30.0% | |
| GAAATTCACTTATCGTAACA+AGG | + | chr4.2:760232-760251 | MS.gene62631:CDS | 30.0% | |
| GAATTCAGATTGATTGCAAT+TGG | + | chr4.2:760409-760428 | MS.gene62631:intron | 30.0% | |
| GTATACCTTAATCATGACAT+GGG | - | chr4.2:760038-760057 | None:intergenic | 30.0% | |
| TATACCTTAATCATGACATG+GGG | - | chr4.2:760037-760056 | None:intergenic | 30.0% | |
| TATGATTATTGTGTGAACTC+GGG | - | chr4.2:760440-760459 | None:intergenic | 30.0% | |
| TATTTCCTTGCTTTCATTCT+TGG | + | chr4.2:759950-759969 | MS.gene62631:CDS | 30.0% | |
| TCCTATTCAGAAATCGTAAT+TGG | + | chr4.2:760299-760318 | MS.gene62631:CDS | 30.0% | |
| TCTGAATAGGATAGATCTAA+AGG | - | chr4.2:760290-760309 | None:intergenic | 30.0% | |
| ! | TCTTTTCTCTCTTATCCTTT+GGG | + | chr4.2:759991-760010 | MS.gene62631:CDS | 30.0% |
| !! | AGAAGTTTTATCAATCAAGG+AGG | + | chr4.2:760644-760663 | MS.gene62631:CDS | 30.0% |
| AAAAGCCAAGAATGAAAGCA+AGG | - | chr4.2:759958-759977 | None:intergenic | 35.0% | |
| ATAGGATAGATCTAAAGGTG+TGG | - | chr4.2:760285-760304 | None:intergenic | 35.0% | |
| ATCAATTTCTTTCCAAGGCT+TGG | - | chr4.2:759867-759886 | None:intergenic | 35.0% | |
| ATGATTATTGTGTGAACTCG+GGG | - | chr4.2:760439-760458 | None:intergenic | 35.0% | |
| GAGAGAAAAGAGTGAACAAA+AGG | - | chr4.2:759982-760001 | None:intergenic | 35.0% | |
| GATAACAGGAGTAGAATGAA+AGG | - | chr4.2:759747-759766 | None:intergenic | 35.0% | |
| GCCAATTACGATTTCTGAAT+AGG | - | chr4.2:760303-760322 | None:intergenic | 35.0% | |
| ! | CTCTTTTCTCTCTTATCCTT+TGG | + | chr4.2:759990-760009 | MS.gene62631:CDS | 35.0% |
| ! | CTTTTCTCTCTTATCCTTTG+GGG | + | chr4.2:759992-760011 | MS.gene62631:CDS | 35.0% |
| ! | TGTTGTTGTTGTTGAGTTTC+CGG | - | chr4.2:759826-759845 | None:intergenic | 35.0% |
| !! | AAGCTCAATTTTAATGGCAC+TGG | - | chr4.2:760766-760785 | None:intergenic | 35.0% |
| !! | TTTAATGGCACTGGTAAAGT+TGG | - | chr4.2:760757-760776 | None:intergenic | 35.0% |
| !!! | AGTGGTTTTTTCACCATCAT+GGG | - | chr4.2:759720-759739 | None:intergenic | 35.0% |
| !!! | TAGTGGTTTTTTCACCATCA+TGG | - | chr4.2:759721-759740 | None:intergenic | 35.0% |
| AACAGGAGTAGAATGAAAGG+AGG | - | chr4.2:759744-759763 | None:intergenic | 40.0% | |
| AAGATCCCATTGTATGGAAG+TGG | + | chr4.2:760703-760722 | MS.gene62631:CDS | 40.0% | |
| AATCATGACATGGGGTTTCA+TGG | - | chr4.2:760029-760048 | None:intergenic | 40.0% | |
| ACAACGATCGATACACTGAT+TGG | + | chr4.2:760515-760534 | MS.gene62631:intron | 40.0% | |
| AGCTTATGTGCTTGGGAAAT+TGG | + | chr4.2:760801-760820 | MS.gene62631:CDS | 40.0% | |
| AGTAGAATGAAAGGAGGTAG+TGG | - | chr4.2:759738-759757 | None:intergenic | 40.0% | |
| ATAGGTGCAAGACTTCTTGA+GGG | - | chr4.2:760899-760918 | None:intergenic | 40.0% | |
| ATCATGACATGGGGTTTCAT+GGG | - | chr4.2:760028-760047 | None:intergenic | 40.0% | |
| ATCATTCTCTTTCTCGTCGT+TGG | + | chr4.2:759927-759946 | MS.gene62631:CDS | 40.0% | |
| GAAACCCCATGTCATGATTA+AGG | + | chr4.2:760030-760049 | MS.gene62631:CDS | 40.0% | |
| GAGTCAAAGATTAGTGAGTG+TGG | + | chr4.2:760666-760685 | MS.gene62631:CDS | 40.0% | |
| GGACTTTGAACATAGTATGC+TGG | - | chr4.2:759695-759714 | None:intergenic | 40.0% | |
| GTCACTAGATCGAGATCAAA+TGG | + | chr4.2:760466-760485 | MS.gene62631:intron | 40.0% | |
| GTGTCAATGTTGTGTGTGTA+TGG | + | chr4.2:760371-760390 | MS.gene62631:intron | 40.0% | |
| TAGCACCACTTCCATACAAT+GGG | - | chr4.2:760711-760730 | None:intergenic | 40.0% | |
| TCAGAAATCGTAATTGGCAC+TGG | + | chr4.2:760305-760324 | MS.gene62631:CDS | 40.0% | |
| ! | AGATCTAGAGCTTATGTGCT+TGG | + | chr4.2:760793-760812 | MS.gene62631:CDS | 40.0% |
| ! | GATCTAGAGCTTATGTGCTT+GGG | + | chr4.2:760794-760813 | MS.gene62631:CDS | 40.0% |
| ! | GTTGTTGTTGTTGAGTTTCC+GGG | - | chr4.2:759825-759844 | None:intergenic | 40.0% |
| !!! | CGTAACAAGGGCACATTTTT+TGG | + | chr4.2:760245-760264 | MS.gene62631:CDS | 40.0% |
| !!! | GTTTTTTCACCATCATGGGA+TGG | - | chr4.2:759716-759735 | None:intergenic | 40.0% |
| AATGAGGAGGAGAACCCATT+GGG | - | chr4.2:759772-759791 | None:intergenic | 45.0% | |
| ACTCCTGTTATCAGCCCAAT+GGG | + | chr4.2:759755-759774 | MS.gene62631:CDS | 45.0% | |
| ATTAGTGAGTGTGGCAGTGA+TGG | + | chr4.2:760675-760694 | MS.gene62631:CDS | 45.0% | |
| CATAGGTGCAAGACTTCTTG+AGG | - | chr4.2:760900-760919 | None:intergenic | 45.0% | |
| CTAGAGGAAGAGTGAGAATG+AGG | - | chr4.2:759788-759807 | None:intergenic | 45.0% | |
| CTAGCACCACTTCCATACAA+TGG | - | chr4.2:760712-760731 | None:intergenic | 45.0% | |
| GAGCATGTTAGAGTTCAAGC+TGG | + | chr4.2:760158-760177 | MS.gene62631:CDS | 45.0% | |
| GCATACAAAGACAGACTCAG+AGG | + | chr4.2:759625-759644 | MS.gene62631:CDS | 45.0% | |
| GGAAGCAAGATCCCATTGTA+TGG | + | chr4.2:760697-760716 | MS.gene62631:CDS | 45.0% | |
| GTTCAAAGTCCATCCCATGA+TGG | + | chr4.2:759704-759723 | MS.gene62631:CDS | 45.0% | |
| TACTCCTGTTATCAGCCCAA+TGG | + | chr4.2:759754-759773 | MS.gene62631:CDS | 45.0% | |
| TTAGTGAGTGTGGCAGTGAT+GGG | + | chr4.2:760676-760695 | MS.gene62631:CDS | 45.0% | |
| ! | TCAAGCTGGTTCAGATGCAA+CGG | + | chr4.2:760172-760191 | MS.gene62631:CDS | 45.0% |
| !! | TCCAAGGCTTGGTGTTACTA+CGG | - | chr4.2:759856-759875 | None:intergenic | 45.0% |
| ACATAGTATGCTGGTCGACG+AGG | - | chr4.2:759686-759705 | None:intergenic | 50.0% | |
| ACCGTAGTAACACCAAGCCT+TGG | + | chr4.2:759852-759871 | MS.gene62631:CDS | 50.0% | |
| GAACCCATTGGGCTGATAAC+AGG | - | chr4.2:759761-759780 | None:intergenic | 50.0% | |
| GAATGAGGAGGAGAACCCAT+TGG | - | chr4.2:759773-759792 | None:intergenic | 50.0% | |
| GAGGAAGAGTGAGAATGAGG+AGG | - | chr4.2:759785-759804 | None:intergenic | 50.0% | |
| GTTTCCGGGAACCAGAGAAA+CGG | - | chr4.2:759811-759830 | None:intergenic | 50.0% | |
| TCGACGAGGAGATCTTGTTG+TGG | - | chr4.2:759672-759691 | None:intergenic | 50.0% | |
| TCTTCCTCTAGCCGTTTCTC+TGG | + | chr4.2:759797-759816 | MS.gene62631:CDS | 50.0% | |
| ! | CAAGCTGGTTCAGATGCAAC+GGG | + | chr4.2:760173-760192 | MS.gene62631:CDS | 50.0% |
| !! | AAGGCTTGGTGTTACTACGG+TGG | - | chr4.2:759853-759872 | None:intergenic | 50.0% |
| !! | GCTAGTCTTAGCAGCACAAC+TGG | + | chr4.2:760727-760746 | MS.gene62631:CDS | 50.0% |
| GGAACCAGAGAAACGGCTAG+AGG | - | chr4.2:759804-759823 | None:intergenic | 55.0% | |
| TGGTTCAGATGCAACGGGTG+TGG | + | chr4.2:760178-760197 | MS.gene62631:CDS | 55.0% | |
| ! | CTAGCCGTTTCTCTGGTTCC+CGG | + | chr4.2:759804-759823 | MS.gene62631:CDS | 55.0% |
| TGGGTCTGCTAGCACCCCAA+AGG | - | chr4.2:760009-760028 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 759623 | 760924 | 759623 | ID=MS.gene62631 |
| chr4.2 | mRNA | 759623 | 760924 | 759623 | ID=MS.gene62631.t1;Parent=MS.gene62631 |
| chr4.2 | exon | 759623 | 760051 | 759623 | ID=MS.gene62631.t1.exon1;Parent=MS.gene62631.t1 |
| chr4.2 | CDS | 759623 | 760051 | 759623 | ID=cds.MS.gene62631.t1;Parent=MS.gene62631.t1 |
| chr4.2 | exon | 760146 | 760331 | 760146 | ID=MS.gene62631.t1.exon2;Parent=MS.gene62631.t1 |
| chr4.2 | CDS | 760146 | 760331 | 760146 | ID=cds.MS.gene62631.t1;Parent=MS.gene62631.t1 |
| chr4.2 | exon | 760640 | 760924 | 760640 | ID=MS.gene62631.t1.exon3;Parent=MS.gene62631.t1 |
| chr4.2 | CDS | 760640 | 760924 | 760640 | ID=cds.MS.gene62631.t1;Parent=MS.gene62631.t1 |
| Gene Sequence |
| Protein sequence |
