Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29968.t1 | XP_003630913.1 | 91.2 | 320 | 28 | 0 | 1 | 320 | 1 | 320 | 7.00E-169 | 603.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29968.t1 | Q9ZU90 | 35.2 | 293 | 147 | 7 | 26 | 307 | 17 | 277 | 9.6e-42 | 172.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29968.t1 | G7LAI1 | 91.2 | 320 | 28 | 0 | 1 | 320 | 1 | 320 | 5.0e-169 | 603.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene29968 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene050060 | MS.gene29968 | 0.823637 | 1.24E-53 | -1.69E-46 |
| MS.gene050133 | MS.gene29968 | -0.810456 | 1.14E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene29968 | 0.814658 | 1.38E-51 | -1.69E-46 |
| MS.gene050426 | MS.gene29968 | -0.832151 | 1.11E-55 | -1.69E-46 |
| MS.gene050593 | MS.gene29968 | 0.804064 | 2.58E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene29968 | 0.830213 | 3.33E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene29968 | 0.822021 | 2.96E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene29968 | 0.801962 | 7.03E-49 | -1.69E-46 |
| MS.gene051521 | MS.gene29968 | 0.805059 | 1.60E-49 | -1.69E-46 |
| MS.gene051525 | MS.gene29968 | 0.801819 | 7.52E-49 | -1.69E-46 |
| MS.gene051750 | MS.gene29968 | -0.801968 | 7.01E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene29968 | 0.834365 | 3.13E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene29968 | 0.804252 | 2.36E-49 | -1.69E-46 |
| MS.gene052134 | MS.gene29968 | 0.817563 | 3.09E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene29968 | 0.805575 | 1.25E-49 | -1.69E-46 |
| MS.gene052136 | MS.gene29968 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene29968 | 0.801256 | 9.81E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene29968 | 0.811585 | 6.51E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene29968 | 0.82732 | 1.67E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene29968 | 0.808635 | 2.81E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene29968 | 0.840995 | 6.21E-58 | -1.69E-46 |
| MS.gene052505 | MS.gene29968 | 0.800724 | 1.26E-48 | -1.69E-46 |
| MS.gene053449 | MS.gene29968 | 0.836891 | 7.17E-57 | -1.69E-46 |
| MS.gene053912 | MS.gene29968 | 0.812771 | 3.58E-51 | -1.69E-46 |
| MS.gene054107 | MS.gene29968 | 0.82401 | 1.02E-53 | -1.69E-46 |
| MS.gene054349 | MS.gene29968 | 0.802246 | 6.14E-49 | -1.69E-46 |
| MS.gene054884 | MS.gene29968 | -0.82364 | 1.24E-53 | -1.69E-46 |
| MS.gene055224 | MS.gene29968 | 0.805456 | 1.32E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene29968 | 0.840455 | 8.61E-58 | -1.69E-46 |
| MS.gene05553 | MS.gene29968 | 0.839066 | 1.98E-57 | -1.69E-46 |
| MS.gene05556 | MS.gene29968 | 0.825895 | 3.65E-54 | -1.69E-46 |
| MS.gene055741 | MS.gene29968 | 0.824964 | 6.07E-54 | -1.69E-46 |
| MS.gene055744 | MS.gene29968 | 0.830474 | 2.88E-55 | -1.69E-46 |
| MS.gene056233 | MS.gene29968 | 0.815631 | 8.38E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene29968 | 0.824847 | 6.47E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene29968 | 0.832555 | 8.84E-56 | -1.69E-46 |
| MS.gene057356 | MS.gene29968 | -0.825296 | 5.06E-54 | -1.69E-46 |
| MS.gene057396 | MS.gene29968 | 0.837609 | 4.70E-57 | -1.69E-46 |
| MS.gene057927 | MS.gene29968 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene058007 | MS.gene29968 | 0.816629 | 5.01E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene29968 | 0.806852 | 6.73E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene29968 | 0.81483 | 1.26E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene29968 | 0.809622 | 1.73E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene29968 | 0.808247 | 3.40E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene29968 | 0.842581 | 2.37E-58 | -1.69E-46 |
| MS.gene059807 | MS.gene29968 | 0.838976 | 2.09E-57 | -1.69E-46 |
| MS.gene060403 | MS.gene29968 | 0.825405 | 4.77E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene29968 | 0.800703 | 1.27E-48 | -1.69E-46 |
| MS.gene061154 | MS.gene29968 | 0.842984 | 1.85E-58 | -1.69E-46 |
| MS.gene061159 | MS.gene29968 | 0.817679 | 2.91E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29968.t1 | MTR_8g104920 | 95.938 | 320 | 13 | 0 | 1 | 320 | 1 | 320 | 0.0 | 632 |
| MS.gene29968.t1 | MTR_8g080000 | 31.673 | 281 | 160 | 6 | 26 | 278 | 279 | 555 | 6.41e-40 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29968.t1 | AT2G01620 | 40.956 | 293 | 130 | 7 | 26 | 307 | 17 | 277 | 7.33e-69 | 217 |
| MS.gene29968.t1 | AT3G26000 | 33.582 | 268 | 173 | 3 | 12 | 278 | 187 | 450 | 7.00e-47 | 164 |
| MS.gene29968.t1 | AT3G27290 | 29.644 | 253 | 166 | 6 | 26 | 272 | 128 | 374 | 4.17e-28 | 112 |
Find 72 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTATTGCAGTCCACTTT+TGG | 0.183685 | 4.3:+1589924 | None:intergenic |
| TCCTCATGAAGCCATGTTTC+TGG | 0.211699 | 4.3:-1590858 | MS.gene29968:CDS |
| AAACCAGAAGATTATTGATT+TGG | 0.249539 | 4.3:-1589991 | MS.gene29968:CDS |
| TCTCCAAATCAATAATCTTC+TGG | 0.264021 | 4.3:+1589988 | None:intergenic |
| CGCAACTTCTTCAAGTTCTT+CGG | 0.331082 | 4.3:+1589824 | None:intergenic |
| CATACACTGATGTTCTATAA+TGG | 0.342115 | 4.3:-1589647 | None:intergenic |
| CCACGTTTATGATAGTAGTT+AGG | 0.364950 | 4.3:+1590041 | None:intergenic |
| TGGTTAAGCAGTTGGCTCTT+TGG | 0.371025 | 4.3:+1590168 | None:intergenic |
| TTGAAGCCTACCATTTGCTT+TGG | 0.382156 | 4.3:+1590676 | None:intergenic |
| GCCCAAAAGTGGACTGCAAT+AGG | 0.399387 | 4.3:-1589926 | MS.gene29968:CDS |
| TTAACCACCTTGAGTTTAAA+CGG | 0.409604 | 4.3:-1590152 | MS.gene29968:CDS |
| TGTGTTGGCTCGTCTTCTAA+TGG | 0.418382 | 4.3:+1590068 | None:intergenic |
| ATTGTAAGCAGCACACAAAT+TGG | 0.441410 | 4.3:-1589734 | MS.gene29968:CDS |
| ACAGCCGTTAGAACTCCTTC+AGG | 0.447920 | 4.3:+1590203 | None:intergenic |
| CTTCATATACCAGCATGCAC+TGG | 0.461330 | 4.3:-1590233 | MS.gene29968:CDS |
| TTTGTGTGCTGCTTACAATA+TGG | 0.466361 | 4.3:+1589738 | None:intergenic |
| CATTCTCACCTCAAAGCACT+TGG | 0.467138 | 4.3:+1589959 | None:intergenic |
| ACATTACCTCTTCAATAAAG+AGG | 0.477963 | 4.3:+1590588 | None:intergenic |
| TACTGACCATGGACTACAAA+GGG | 0.495839 | 4.3:-1590624 | MS.gene29968:CDS |
| AAGATCACATCCAAAGCAAA+TGG | 0.499356 | 4.3:-1590686 | MS.gene29968:CDS |
| CAGCCGTTAGAACTCCTTCA+GGG | 0.508260 | 4.3:+1590204 | None:intergenic |
| CAACAACCCTTTGTAGTCCA+TGG | 0.509847 | 4.3:+1590618 | None:intergenic |
| ACAAAACCTCTTTATTGAAG+AGG | 0.511417 | 4.3:-1590594 | MS.gene29968:intron |
| TGCATCCCCTACATTGAGCT+TGG | 0.519283 | 4.3:+1589892 | None:intergenic |
| ATTTCTTGTGCCTTGAATGT+TGG | 0.519349 | 4.3:-1589794 | MS.gene29968:CDS |
| CTGAGAGTCTTGAATTGAGA+GGG | 0.521633 | 4.3:+1590723 | None:intergenic |
| TTGGCTCGTCTTCTAATGGA+AGG | 0.527622 | 4.3:+1590072 | None:intergenic |
| ACCGCGCCAAGCTCAATGTA+GGG | 0.527820 | 4.3:-1589898 | MS.gene29968:CDS |
| CAAGTGCTTTGAGGTGAGAA+TGG | 0.529736 | 4.3:-1589958 | MS.gene29968:CDS |
| GTAAATGCCGTTTAAACTCA+AGG | 0.533829 | 4.3:+1590145 | None:intergenic |
| ACTCAAGGTGGTTAAGCAGT+TGG | 0.536638 | 4.3:+1590160 | None:intergenic |
| GAAAACTGTGGTGGATGTGT+TGG | 0.545086 | 4.3:-1589849 | MS.gene29968:CDS |
| GGGGTTATCCCAGTGCATGC+TGG | 0.549336 | 4.3:+1590224 | None:intergenic |
| TTCATATACCAGCATGCACT+GGG | 0.550386 | 4.3:-1590232 | MS.gene29968:CDS |
| GGTGTATGACTGCCCAAAAG+TGG | 0.558354 | 4.3:-1589937 | MS.gene29968:CDS |
| TTTGTTACAGAAATTGCACT+TGG | 0.560253 | 4.3:+1589761 | None:intergenic |
| AACCGCGCCAAGCTCAATGT+AGG | 0.565243 | 4.3:-1589899 | MS.gene29968:CDS |
| TAGTAGTTAGGTTGTTGTGT+TGG | 0.572785 | 4.3:+1590053 | None:intergenic |
| TCAACAATGATGTATTGCTA+TGG | 0.574377 | 4.3:-1590766 | MS.gene29968:CDS |
| TGCATCCACATTACTGACCA+TGG | 0.576552 | 4.3:-1590635 | MS.gene29968:CDS |
| GAAGCTGTAACCAACATTCA+AGG | 0.577227 | 4.3:+1589784 | None:intergenic |
| AGTTGAGGAAGCAGAACAAG+AGG | 0.586847 | 4.3:-1590885 | MS.gene29968:CDS |
| TGAAACGAGCACCACAGTTG+AGG | 0.592271 | 4.3:-1590900 | MS.gene29968:CDS |
| GAAATGTCCCAAGTGCTTTG+AGG | 0.594131 | 4.3:-1589967 | MS.gene29968:CDS |
| AACCCCTGAAGGAGTTCTAA+CGG | 0.594789 | 4.3:-1590207 | MS.gene29968:CDS |
| TGATGTGCAAACACGAGACA+TGG | 0.595602 | 4.3:+1590802 | None:intergenic |
| CCCCTACATTGAGCTTGGCG+CGG | 0.597670 | 4.3:+1589897 | None:intergenic |
| TTGTTCTGCTTCCTCAACTG+TGG | 0.601003 | 4.3:+1590889 | None:intergenic |
| ATTCTCACCTCAAAGCACTT+GGG | 0.603335 | 4.3:+1589960 | None:intergenic |
| TCACATCCAAAGCAAATGGT+AGG | 0.604181 | 4.3:-1590682 | MS.gene29968:CDS |
| AGCTTACCTTCGAGTGTACG+AGG | 0.604187 | 4.3:-1590831 | MS.gene29968:CDS |
| GTAAGCTATCACCAGAAACA+TGG | 0.609754 | 4.3:+1590847 | None:intergenic |
| AGAAACATGGCTTCATGAGG+AGG | 0.615086 | 4.3:+1590860 | None:intergenic |
| AAAAGTGGACTGCAATAGGA+AGG | 0.615199 | 4.3:-1589922 | MS.gene29968:CDS |
| GTAAGCAGCACACAAATTGG+TGG | 0.623433 | 4.3:-1589731 | MS.gene29968:CDS |
| TGCACTGGGATAACCCCTGA+AGG | 0.628848 | 4.3:-1590218 | MS.gene29968:CDS |
| GTTGAGGAAGCAGAACAAGA+GGG | 0.631563 | 4.3:-1590884 | MS.gene29968:CDS |
| ACCAGAAACATGGCTTCATG+AGG | 0.632114 | 4.3:+1590857 | None:intergenic |
| TGAGAGTCTTGAATTGAGAG+GGG | 0.638788 | 4.3:+1590724 | None:intergenic |
| TTAAAACCTCGTACACTCGA+AGG | 0.640853 | 4.3:+1590825 | None:intergenic |
| GTAGTCCATGGTCAGTAATG+TGG | 0.645529 | 4.3:+1590630 | None:intergenic |
| TCTGAGAGTCTTGAATTGAG+AGG | 0.649051 | 4.3:+1590722 | None:intergenic |
| CCAAGGTGTGAAAACTGTGG+TGG | 0.662655 | 4.3:-1589858 | MS.gene29968:CDS |
| GTGTGTGACGAAAATTCTCA+CGG | 0.664023 | 4.3:-1589675 | MS.gene29968:CDS |
| CCGCGCCAAGCTCAATGTAG+GGG | 0.665510 | 4.3:-1589897 | MS.gene29968:CDS |
| TTACTGACCATGGACTACAA+AGG | 0.669179 | 4.3:-1590625 | MS.gene29968:CDS |
| AGCCGTTAGAACTCCTTCAG+GGG | 0.677599 | 4.3:+1590205 | None:intergenic |
| TTGTTACAGAAATTGCACTT+GGG | 0.679098 | 4.3:+1589762 | None:intergenic |
| CCTAACTACTATCATAAACG+TGG | 0.682131 | 4.3:-1590041 | MS.gene29968:CDS |
| GAACTTGAAGAAGTTGCGTG+CGG | 0.702138 | 4.3:-1589819 | MS.gene29968:CDS |
| AATGCCGTTTAAACTCAAGG+TGG | 0.706837 | 4.3:+1590148 | None:intergenic |
| AATCCAAGGTGTGAAAACTG+TGG | 0.786992 | 4.3:-1589861 | MS.gene29968:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATACAAAATTAAGTTTTTT+AGG | - | chr4.3:1590280-1590299 | MS.gene29968:intron | 10.0% |
| !! | AAAAAAAATATAAAAACCAG+AGG | + | chr4.3:1590241-1590260 | None:intergenic | 15.0% |
| !! | AAACCAGAAGATTATTGATT+TGG | - | chr4.3:1590588-1590607 | MS.gene29968:intron | 25.0% |
| !! | ATTTTGCTACTATGATTCAA+TGG | - | chr4.3:1590030-1590049 | MS.gene29968:CDS | 25.0% |
| ACAAAACCTCTTTATTGAAG+AGG | - | chr4.3:1589985-1590004 | MS.gene29968:CDS | 30.0% | |
| ACATTACCTCTTCAATAAAG+AGG | + | chr4.3:1589994-1590013 | None:intergenic | 30.0% | |
| GTGGAATTCATTCAATTCAA+CGG | - | chr4.3:1590142-1590161 | MS.gene29968:CDS | 30.0% | |
| TCAACAATGATGTATTGCTA+TGG | - | chr4.3:1589813-1589832 | MS.gene29968:CDS | 30.0% | |
| TCTCCAAATCAATAATCTTC+TGG | + | chr4.3:1590594-1590613 | None:intergenic | 30.0% | |
| TTAACCACCTTGAGTTTAAA+CGG | - | chr4.3:1590427-1590446 | MS.gene29968:intron | 30.0% | |
| TTGTTACAGAAATTGCACTT+GGG | + | chr4.3:1590820-1590839 | None:intergenic | 30.0% | |
| TTTGTTACAGAAATTGCACT+TGG | + | chr4.3:1590821-1590840 | None:intergenic | 30.0% | |
| ! | GATGCATATTTTGTAATCCA+AGG | - | chr4.3:1590704-1590723 | MS.gene29968:CDS | 30.0% |
| !!! | GTTTTAGCTGCTTAACAATT+AGG | - | chr4.3:1590102-1590121 | MS.gene29968:CDS | 30.0% |
| AAGATCACATCCAAAGCAAA+TGG | - | chr4.3:1589893-1589912 | MS.gene29968:CDS | 35.0% | |
| ATTGTAAGCAGCACACAAAT+TGG | - | chr4.3:1590845-1590864 | MS.gene29968:CDS | 35.0% | |
| ATTTCTTGTGCCTTGAATGT+TGG | - | chr4.3:1590785-1590804 | MS.gene29968:CDS | 35.0% | |
| CCACGTTTATGATAGTAGTT+AGG | + | chr4.3:1590541-1590560 | None:intergenic | 35.0% | |
| CCTAACTACTATCATAAACG+TGG | - | chr4.3:1590538-1590557 | MS.gene29968:intron | 35.0% | |
| TTCAATCACAGTCTGATTTC+TGG | - | chr4.3:1590306-1590325 | MS.gene29968:intron | 35.0% | |
| TTGCAAATTTCTGTGTCACA+AGG | - | chr4.3:1590182-1590201 | MS.gene29968:CDS | 35.0% | |
| ! | CATCAAGATGATCGTTTTGT+AGG | + | chr4.3:1590462-1590481 | None:intergenic | 35.0% |
| ! | GTAAATGCCGTTTAAACTCA+AGG | + | chr4.3:1590437-1590456 | None:intergenic | 35.0% |
| ! | TAGTAGTTAGGTTGTTGTGT+TGG | + | chr4.3:1590529-1590548 | None:intergenic | 35.0% |
| !! | TTTGTGTGCTGCTTACAATA+TGG | + | chr4.3:1590844-1590863 | None:intergenic | 35.0% |
| !!! | AAGGTTTTTTCTGAGGTTTG+AGG | + | chr4.3:1590491-1590510 | None:intergenic | 35.0% |
| !!! | CTAATGGAAGGTTTTTTCTG+AGG | + | chr4.3:1590498-1590517 | None:intergenic | 35.0% |
| AATCCAAGGTGTGAAAACTG+TGG | - | chr4.3:1590718-1590737 | MS.gene29968:CDS | 40.0% | |
| ACAATTAGGATAGTGAGCGA+AGG | - | chr4.3:1590116-1590135 | MS.gene29968:CDS | 40.0% | |
| CAATTAGGATAGTGAGCGAA+GGG | - | chr4.3:1590117-1590136 | MS.gene29968:CDS | 40.0% | |
| CTGAGAGTCTTGAATTGAGA+GGG | + | chr4.3:1589859-1589878 | None:intergenic | 40.0% | |
| GAAGCTGTAACCAACATTCA+AGG | + | chr4.3:1590798-1590817 | None:intergenic | 40.0% | |
| GTAAGCTATCACCAGAAACA+TGG | + | chr4.3:1589735-1589754 | None:intergenic | 40.0% | |
| GTGTGTGACGAAAATTCTCA+CGG | - | chr4.3:1590904-1590923 | MS.gene29968:CDS | 40.0% | |
| TCACATCCAAAGCAAATGGT+AGG | - | chr4.3:1589897-1589916 | MS.gene29968:CDS | 40.0% | |
| TCTGAGAGTCTTGAATTGAG+AGG | + | chr4.3:1589860-1589879 | None:intergenic | 40.0% | |
| TGAGAGTCTTGAATTGAGAG+GGG | + | chr4.3:1589858-1589877 | None:intergenic | 40.0% | |
| TTAAAACCTCGTACACTCGA+AGG | + | chr4.3:1589757-1589776 | None:intergenic | 40.0% | |
| TTCATATACCAGCATGCACT+GGG | - | chr4.3:1590347-1590366 | MS.gene29968:intron | 40.0% | |
| TTGAAGCCTACCATTTGCTT+TGG | + | chr4.3:1589906-1589925 | None:intergenic | 40.0% | |
| ! | AATGCCGTTTAAACTCAAGG+TGG | + | chr4.3:1590434-1590453 | None:intergenic | 40.0% |
| ! | ATTCTCACCTCAAAGCACTT+GGG | + | chr4.3:1590622-1590641 | None:intergenic | 40.0% |
| ! | CGCAACTTCTTCAAGTTCTT+CGG | + | chr4.3:1590758-1590777 | None:intergenic | 40.0% |
| ! | TACTGACCATGGACTACAAA+GGG | - | chr4.3:1589955-1589974 | MS.gene29968:CDS | 40.0% |
| ! | TTACTGACCATGGACTACAA+AGG | - | chr4.3:1589954-1589973 | MS.gene29968:CDS | 40.0% |
| ! | TTCCTATTGCAGTCCACTTT+TGG | + | chr4.3:1590658-1590677 | None:intergenic | 40.0% |
| !! | AAAAGTGGACTGCAATAGGA+AGG | - | chr4.3:1590657-1590676 | MS.gene29968:CDS | 40.0% |
| !! | TCCTATTGCAGTCCACTTTT+GGG | + | chr4.3:1590657-1590676 | None:intergenic | 40.0% |
| ACCAGAAACATGGCTTCATG+AGG | + | chr4.3:1589725-1589744 | None:intergenic | 45.0% | |
| ACTCAAGGTGGTTAAGCAGT+TGG | + | chr4.3:1590422-1590441 | None:intergenic | 45.0% | |
| AGAAACATGGCTTCATGAGG+AGG | + | chr4.3:1589722-1589741 | None:intergenic | 45.0% | |
| AGTTGAGGAAGCAGAACAAG+AGG | - | chr4.3:1589694-1589713 | MS.gene29968:CDS | 45.0% | |
| CAACAACCCTTTGTAGTCCA+TGG | + | chr4.3:1589964-1589983 | None:intergenic | 45.0% | |
| CAATCCTCGACACAATGGTA+AGG | + | chr4.3:1590214-1590233 | None:intergenic | 45.0% | |
| CTTCATATACCAGCATGCAC+TGG | - | chr4.3:1590346-1590365 | MS.gene29968:intron | 45.0% | |
| GAAATGTCCCAAGTGCTTTG+AGG | - | chr4.3:1590612-1590631 | MS.gene29968:CDS | 45.0% | |
| GAACTTGAAGAAGTTGCGTG+CGG | - | chr4.3:1590760-1590779 | MS.gene29968:CDS | 45.0% | |
| GTAAGCAGCACACAAATTGG+TGG | - | chr4.3:1590848-1590867 | MS.gene29968:CDS | 45.0% | |
| GTAGTCCATGGTCAGTAATG+TGG | + | chr4.3:1589952-1589971 | None:intergenic | 45.0% | |
| GTGAACAATCCTCGACACAA+TGG | + | chr4.3:1590219-1590238 | None:intergenic | 45.0% | |
| GTTGAGGAAGCAGAACAAGA+GGG | - | chr4.3:1589695-1589714 | MS.gene29968:CDS | 45.0% | |
| TCCTCATGAAGCCATGTTTC+TGG | - | chr4.3:1589721-1589740 | MS.gene29968:CDS | 45.0% | |
| TGATGTGCAAACACGAGACA+TGG | + | chr4.3:1589780-1589799 | None:intergenic | 45.0% | |
| TGCATCCACATTACTGACCA+TGG | - | chr4.3:1589944-1589963 | MS.gene29968:CDS | 45.0% | |
| TTGTTCTGCTTCCTCAACTG+TGG | + | chr4.3:1589693-1589712 | None:intergenic | 45.0% | |
| ! | AACCCCTGAAGGAGTTCTAA+CGG | - | chr4.3:1590372-1590391 | MS.gene29968:intron | 45.0% |
| ! | CATTCTCACCTCAAAGCACT+TGG | + | chr4.3:1590623-1590642 | None:intergenic | 45.0% |
| ! | TGGTTAAGCAGTTGGCTCTT+TGG | + | chr4.3:1590414-1590433 | None:intergenic | 45.0% |
| ! | TTGGCTCGTCTTCTAATGGA+AGG | + | chr4.3:1590510-1590529 | None:intergenic | 45.0% |
| !! | CAAGTGCTTTGAGGTGAGAA+TGG | - | chr4.3:1590621-1590640 | MS.gene29968:CDS | 45.0% |
| !! | GAAAACTGTGGTGGATGTGT+TGG | - | chr4.3:1590730-1590749 | MS.gene29968:CDS | 45.0% |
| !! | TGTGTTGGCTCGTCTTCTAA+TGG | + | chr4.3:1590514-1590533 | None:intergenic | 45.0% |
| ACAGCCGTTAGAACTCCTTC+AGG | + | chr4.3:1590379-1590398 | None:intergenic | 50.0% | |
| AGCCGTTAGAACTCCTTCAG+GGG | + | chr4.3:1590377-1590396 | None:intergenic | 50.0% | |
| AGCTTACCTTCGAGTGTACG+AGG | - | chr4.3:1589748-1589767 | MS.gene29968:CDS | 50.0% | |
| CAGCCGTTAGAACTCCTTCA+GGG | + | chr4.3:1590378-1590397 | None:intergenic | 50.0% | |
| CCAAGGTGTGAAAACTGTGG+TGG | - | chr4.3:1590721-1590740 | MS.gene29968:CDS | 50.0% | |
| GGTGTATGACTGCCCAAAAG+TGG | - | chr4.3:1590642-1590661 | MS.gene29968:CDS | 50.0% | |
| TGAAACGAGCACCACAGTTG+AGG | - | chr4.3:1589679-1589698 | MS.gene29968:CDS | 50.0% | |
| TGCATCCCCTACATTGAGCT+TGG | + | chr4.3:1590690-1590709 | None:intergenic | 50.0% | |
| TGTCGAGGATTGTTCACCTC+TGG | - | chr4.3:1590222-1590241 | MS.gene29968:CDS | 50.0% | |
| ! | CCACCACAGTTTTCACACCT+TGG | + | chr4.3:1590724-1590743 | None:intergenic | 50.0% |
| !! | GCCCAAAAGTGGACTGCAAT+AGG | - | chr4.3:1590653-1590672 | MS.gene29968:CDS | 50.0% |
| AACCGCGCCAAGCTCAATGT+AGG | - | chr4.3:1590680-1590699 | MS.gene29968:CDS | 55.0% | |
| ACCGCGCCAAGCTCAATGTA+GGG | - | chr4.3:1590681-1590700 | MS.gene29968:CDS | 55.0% | |
| GCGACCTTACCATTGTGTCG+AGG | - | chr4.3:1590207-1590226 | MS.gene29968:CDS | 55.0% | |
| GGATAGTGAGCGAAGGGATG+TGG | - | chr4.3:1590123-1590142 | MS.gene29968:CDS | 55.0% | |
| TGCACTGGGATAACCCCTGA+AGG | - | chr4.3:1590361-1590380 | MS.gene29968:intron | 55.0% | |
| CCCCTACATTGAGCTTGGCG+CGG | + | chr4.3:1590685-1590704 | None:intergenic | 60.0% | |
| CCGCGCCAAGCTCAATGTAG+GGG | - | chr4.3:1590682-1590701 | MS.gene29968:CDS | 60.0% | |
| GGGGTTATCCCAGTGCATGC+TGG | + | chr4.3:1590358-1590377 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1589650 | 1590951 | 1589650 | ID=MS.gene29968 |
| chr4.3 | mRNA | 1589650 | 1590951 | 1589650 | ID=MS.gene29968.t1;Parent=MS.gene29968 |
| chr4.3 | exon | 1590595 | 1590951 | 1590595 | ID=MS.gene29968.t1.exon1;Parent=MS.gene29968.t1 |
| chr4.3 | CDS | 1590595 | 1590951 | 1590595 | ID=cds.MS.gene29968.t1;Parent=MS.gene29968.t1 |
| chr4.3 | exon | 1589650 | 1590255 | 1589650 | ID=MS.gene29968.t1.exon2;Parent=MS.gene29968.t1 |
| chr4.3 | CDS | 1589650 | 1590255 | 1589650 | ID=cds.MS.gene29968.t1;Parent=MS.gene29968.t1 |
| Gene Sequence |
| Protein sequence |
