AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene35853


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35853.t1 MTR_2g088770 96.591 264 9 0 1 264 63 326 0.0 536
MS.gene35853.t1 MTR_4g046713 70.833 264 75 2 1 263 64 326 9.09e-143 404
MS.gene35853.t1 MTR_7g107520 56.818 264 108 4 1 263 62 320 2.04e-102 301
MS.gene35853.t1 MTR_5g017860 49.057 265 131 4 1 263 64 326 1.41e-85 258
MS.gene35853.t1 MTR_5g017850 47.547 265 135 4 1 263 64 326 1.34e-83 253
MS.gene35853.t1 MTR_2g029850 49.438 267 129 5 1 263 66 330 3.24e-82 251
MS.gene35853.t1 MTR_2g029820 48.881 268 131 5 1 264 66 331 6.03e-82 250
MS.gene35853.t1 MTR_5g022870 49.813 267 120 8 1 263 60 316 1.99e-80 245
MS.gene35853.t1 MTR_3g092990 49.813 267 129 5 1 264 63 327 2.01e-80 245
MS.gene35853.t1 MTR_2g040000 48.519 270 130 5 1 264 66 332 3.46e-80 245
MS.gene35853.t1 MTR_5g021060 49.064 267 131 5 1 264 67 331 1.22e-79 243
MS.gene35853.t1 MTR_2g029800 47.388 268 135 5 1 264 66 331 2.03e-79 243
MS.gene35853.t1 MTR_4g125940 47.015 268 134 5 1 263 10 274 2.06e-79 241
MS.gene35853.t1 MTR_2g029815 47.566 267 134 5 1 263 66 330 2.64e-79 243
MS.gene35853.t1 MTR_2g008710 48.120 266 131 4 1 263 64 325 2.68e-79 242
MS.gene35853.t1 MTR_8g075100 47.348 264 131 6 1 263 63 319 1.70e-78 240
MS.gene35853.t1 MTR_4g125940 47.015 268 134 5 1 263 65 329 2.22e-78 240
MS.gene35853.t1 MTR_2g029830 46.269 268 138 5 1 264 65 330 3.17e-78 241
MS.gene35853.t1 MTR_8g076820 47.547 265 136 3 1 263 67 330 5.21e-78 239
MS.gene35853.t1 MTR_1g025980 46.388 263 134 5 1 262 61 317 5.43e-77 236
MS.gene35853.t1 MTR_2g028980 46.067 267 138 5 1 263 66 330 7.34e-77 237
MS.gene35853.t1 MTR_1g101830 46.970 264 134 5 1 263 64 322 1.18e-76 235
MS.gene35853.t1 MTR_2g029860 47.940 267 133 5 1 263 66 330 3.09e-76 235
MS.gene35853.t1 MTR_1g054205 44.030 268 143 5 1 263 61 326 2.81e-75 232
MS.gene35853.t1 MTR_3g466200 46.642 268 129 7 1 263 62 320 3.16e-74 229
MS.gene35853.t1 MTR_2g029560 44.944 267 141 5 1 263 61 325 3.82e-74 230
MS.gene35853.t1 MTR_2g029730 45.693 267 139 5 1 263 62 326 5.38e-74 229
MS.gene35853.t1 MTR_4g029180 45.693 267 132 7 1 263 64 321 1.42e-73 228
MS.gene35853.t1 MTR_4g029170 45.318 267 133 7 1 263 64 321 2.68e-72 224
MS.gene35853.t1 MTR_2g029830 45.174 259 136 5 9 263 5 261 1.04e-71 221
MS.gene35853.t1 MTR_7g093370 44.403 268 142 5 1 263 106 371 1.72e-71 224
MS.gene35853.t1 MTR_3g092990 48.450 258 128 5 10 264 61 316 2.21e-71 222
MS.gene35853.t1 MTR_2g029740 44.944 267 141 5 1 263 66 330 3.04e-71 223
MS.gene35853.t1 MTR_1g038680 47.037 270 133 7 1 263 66 332 5.81e-71 221
MS.gene35853.t1 MTR_5g074970 46.468 269 129 7 1 263 67 326 1.21e-70 220
MS.gene35853.t1 MTR_3g094650 47.126 261 129 6 1 259 65 318 1.32e-70 220
MS.gene35853.t1 MTR_2g029910 45.149 268 140 6 1 263 67 332 2.22e-70 220
MS.gene35853.t1 MTR_4g114210 44.944 267 139 5 1 263 58 320 2.26e-70 219
MS.gene35853.t1 MTR_3g072190 44.151 265 137 5 1 263 63 318 3.15e-70 219
MS.gene35853.t1 MTR_5g016010 43.820 267 143 5 1 262 64 328 6.04e-70 218
MS.gene35853.t1 MTR_2g029750 44.569 267 142 5 1 263 66 330 7.34e-70 219
MS.gene35853.t1 MTR_7g029030 42.642 265 144 4 1 263 62 320 1.09e-69 218
MS.gene35853.t1 MTR_2g084080 44.906 265 135 5 1 263 62 317 1.34e-69 217
MS.gene35853.t1 MTR_2g084110 44.528 265 136 5 1 263 62 317 3.28e-69 216
MS.gene35853.t1 MTR_4g083710 42.481 266 145 6 1 263 64 324 6.99e-69 216
MS.gene35853.t1 MTR_1g022970 45.693 267 139 5 1 263 83 347 1.01e-68 216
MS.gene35853.t1 MTR_6g027440 43.609 266 138 6 1 263 58 314 3.61e-68 214
MS.gene35853.t1 MTR_2g084020 44.737 266 135 6 1 263 62 318 3.78e-68 213
MS.gene35853.t1 MTR_2g437770 43.939 264 138 6 1 263 87 341 4.37e-68 214
MS.gene35853.t1 MTR_4g029200 43.396 265 139 5 1 263 83 338 5.13e-68 214
MS.gene35853.t1 MTR_1g086320 44.815 270 139 7 1 263 67 333 5.46e-68 214
MS.gene35853.t1 MTR_7g072510 42.264 265 142 5 1 263 57 312 8.97e-68 212
MS.gene35853.t1 MTR_2g008160 44.944 267 139 5 1 263 61 323 1.62e-67 212
MS.gene35853.t1 MTR_4g133800 44.318 264 138 6 1 263 78 333 1.76e-67 212
MS.gene35853.t1 MTR_1g086490 43.116 276 142 6 1 263 67 340 2.32e-67 212
MS.gene35853.t1 MTR_2g084010 45.018 271 127 7 1 263 62 318 2.35e-67 211
MS.gene35853.t1 MTR_1g077000 40.152 264 145 6 1 263 76 327 2.49e-67 212
MS.gene35853.t1 MTR_7g072480 43.019 265 140 5 1 263 61 316 3.07e-67 211
MS.gene35853.t1 MTR_7g086820 40.977 266 144 6 1 263 57 312 7.33e-67 210
MS.gene35853.t1 MTR_2g008730 46.281 242 125 3 25 263 62 301 6.26e-66 207
MS.gene35853.t1 MTR_2g084090 43.985 266 137 6 1 263 62 318 1.29e-65 207
MS.gene35853.t1 MTR_0155s0040 42.424 264 139 8 1 263 64 315 2.57e-65 206
MS.gene35853.t1 MTR_1g009750 41.948 267 149 4 1 263 64 328 4.07e-65 206
MS.gene35853.t1 MTR_5g014100 41.392 273 146 5 1 263 63 331 1.68e-64 204
MS.gene35853.t1 MTR_4g074995 41.729 266 134 7 1 263 61 308 2.61e-64 203
MS.gene35853.t1 MTR_4g127670 41.948 267 147 5 1 263 61 323 3.31e-64 204
MS.gene35853.t1 MTR_3g072190 42.471 259 138 5 7 263 2 251 3.52e-64 201
MS.gene35853.t1 MTR_4g087965 42.105 266 145 6 3 261 81 344 4.27e-64 204
MS.gene35853.t1 MTR_4g122640 43.071 267 143 7 1 263 75 336 4.67e-64 204
MS.gene35853.t1 MTR_5g049280 39.852 271 152 9 1 263 70 337 1.18e-63 202
MS.gene35853.t1 MTR_4g029190 40.602 266 147 5 1 263 83 340 1.24e-63 202
MS.gene35853.t1 MTR_5g083860 42.379 269 138 7 1 263 68 325 3.38e-63 201
MS.gene35853.t1 MTR_3g094670 45.455 264 129 7 1 259 65 318 1.02e-62 200
MS.gene35853.t1 MTR_1g115900 43.284 268 137 8 1 263 64 321 2.33e-62 199
MS.gene35853.t1 MTR_7g086870 40.000 265 147 6 1 264 59 312 2.47e-62 198
MS.gene35853.t1 MTR_5g074760 44.815 270 132 10 1 263 62 321 3.83e-62 198
MS.gene35853.t1 MTR_5g074740 44.444 270 133 10 1 263 62 321 6.16e-62 198
MS.gene35853.t1 MTR_4g095450 41.948 267 143 6 1 262 64 323 9.48e-62 197
MS.gene35853.t1 MTR_2g084000 40.602 266 146 6 1 263 63 319 7.26e-61 195
MS.gene35853.t1 MTR_7g026990 42.642 265 140 6 1 263 68 322 8.56e-61 195
MS.gene35853.t1 MTR_3g094630 44.944 267 134 6 1 263 65 322 1.81e-60 194
MS.gene35853.t1 MTR_1g090760 37.687 268 160 5 1 263 65 330 3.96e-60 193
MS.gene35853.t1 MTR_5g074860 43.542 271 132 10 1 262 66 324 8.25e-60 192
MS.gene35853.t1 MTR_6g043280 40.377 265 146 6 1 263 78 332 1.10e-59 192
MS.gene35853.t1 MTR_2g099175 38.722 266 153 5 3 263 75 335 1.28e-59 192
MS.gene35853.t1 MTR_8g062780 36.940 268 163 5 1 264 60 325 1.92e-59 191
MS.gene35853.t1 MTR_2g067440 37.801 291 151 3 1 262 97 386 4.93e-59 192
MS.gene35853.t1 MTR_4g030890 40.977 266 150 6 1 264 137 397 5.57e-59 193
MS.gene35853.t1 MTR_4g031140 40.530 264 150 6 2 263 66 324 8.47e-59 190
MS.gene35853.t1 MTR_5g074710 41.852 270 140 10 1 263 62 321 3.74e-58 188
MS.gene35853.t1 MTR_4g074990 38.806 268 136 7 1 263 61 305 2.55e-57 185
MS.gene35853.t1 MTR_6g043240 41.948 267 137 8 1 263 79 331 6.17e-57 186
MS.gene35853.t1 MTR_3g467600 41.852 270 141 9 1 263 64 324 1.46e-56 184
MS.gene35853.t1 MTR_3g466180 40.755 265 146 5 1 263 68 323 3.55e-56 183
MS.gene35853.t1 MTR_2g077990 37.329 292 150 5 1 260 113 403 2.37e-55 183
MS.gene35853.t1 MTR_1g009750 38.783 263 146 4 1 263 64 311 1.26e-54 179
MS.gene35853.t1 MTR_3g105790 41.132 265 150 4 1 263 62 322 1.69e-53 176
MS.gene35853.t1 MTR_2g067450 39.245 265 152 4 3 262 49 309 1.95e-53 176
MS.gene35853.t1 MTR_2g078610 36.301 292 153 5 1 260 113 403 4.72e-53 177
MS.gene35853.t1 MTR_2g008160 40.075 267 117 5 1 263 61 288 1.26e-52 173
MS.gene35853.t1 MTR_6g043460 37.079 267 155 7 1 264 73 329 2.53e-52 174
MS.gene35853.t1 MTR_4g074980 40.377 265 124 8 1 263 62 294 6.09e-52 171
MS.gene35853.t1 MTR_2g078280 36.655 281 145 5 1 249 113 392 5.01e-50 169
MS.gene35853.t1 MTR_4g132110 37.453 267 152 8 3 263 71 328 1.73e-48 163
MS.gene35853.t1 MTR_0286s0010 36.431 269 160 8 1 263 71 334 5.02e-48 162
MS.gene35853.t1 MTR_6g008075 36.431 269 160 8 1 263 71 334 5.02e-48 162
MS.gene35853.t1 MTR_4g074980 42.857 196 106 4 1 194 62 253 2.27e-47 158
MS.gene35853.t1 MTR_4g132110 36.765 272 152 9 3 263 71 333 3.92e-46 157
MS.gene35853.t1 MTR_1g066710 35.472 265 160 5 3 263 66 323 2.41e-45 155
MS.gene35853.t1 MTR_0147s0010 32.500 280 155 5 3 262 116 381 9.25e-45 155
MS.gene35853.t1 MTR_4g132490 33.457 269 166 5 1 263 66 327 1.19e-44 153
MS.gene35853.t1 MTR_2g008160 57.037 135 54 3 1 135 61 191 1.34e-44 149
MS.gene35853.t1 MTR_3g105790 40.496 242 138 4 25 263 8 246 2.46e-44 150
MS.gene35853.t1 MTR_5g074700 40.598 234 114 9 33 263 3 214 1.60e-42 144
MS.gene35853.t1 MTR_1g066380 33.585 265 165 5 3 263 66 323 1.91e-42 147
MS.gene35853.t1 MTR_5g033470 33.704 270 170 6 1 263 110 377 4.42e-42 148
MS.gene35853.t1 MTR_2g029880 42.640 197 99 5 69 263 4 188 3.99e-41 141
MS.gene35853.t1 MTR_1g066680 33.585 265 165 5 3 263 65 322 9.28e-41 143
MS.gene35853.t1 MTR_1g066640 33.585 265 165 5 3 263 66 323 5.94e-40 141
MS.gene35853.t1 MTR_1g066380 32.308 260 165 5 8 263 3 255 7.32e-38 134
MS.gene35853.t1 MTR_5g074860 35.185 270 117 9 1 262 66 285 2.86e-36 130
MS.gene35853.t1 MTR_3g072210 38.342 193 108 5 73 263 55 238 2.00e-34 124
MS.gene35853.t1 MTR_7g072490 33.898 236 91 6 10 243 2 174 3.52e-33 120
MS.gene35853.t1 MTR_7g086790 34.518 197 102 6 11 204 17 189 1.89e-27 105
MS.gene35853.t1 MTR_2g077980 30.104 289 160 8 15 264 1 286 5.09e-27 106
MS.gene35853.t1 MTR_2g078560 28.374 289 159 5 19 260 30 317 5.24e-27 107
MS.gene35853.t1 MTR_6g048160 58.209 67 26 1 3 69 22 86 5.41e-21 85.1
MS.gene35853.t1 MTR_4g114220 44.643 112 48 5 2 109 41 142 9.03e-21 85.9
MS.gene35853.t1 MTR_3g072260 59.155 71 27 2 1 69 63 133 2.15e-20 85.1
MS.gene35853.t1 MTR_7g107500 44.578 83 44 1 181 263 17 97 3.07e-18 77.8
MS.gene35853.t1 MTR_5g058120 32.143 168 101 4 92 259 1 155 4.20e-18 81.6
MS.gene35853.t1 MTR_7g086785 47.368 76 39 1 7 81 1 76 1.33e-16 74.7
MS.gene35853.t1 MTR_1g089005 51.852 81 32 2 1 74 52 132 3.09e-16 74.3
MS.gene35853.t1 MTR_7g086810 40.741 81 24 1 1 81 43 99 7.82e-14 69.3
MS.gene35853.t1 MTR_4g031040 49.180 61 31 0 72 132 25 85 2.95e-12 62.8
MS.gene35853.t1 MTR_6g071110 35.577 104 55 2 19 122 70 161 2.60e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene35853.t1 AT1G05260 71.212 264 76 0 1 264 63 326 2.28e-144 407
MS.gene35853.t1 AT4G11290 71.321 265 74 1 1 263 62 326 1.19e-141 400
MS.gene35853.t1 AT3G21770 68.702 262 82 0 1 262 66 327 1.70e-136 388
MS.gene35853.t1 AT5G15180 57.034 263 111 2 1 263 69 329 6.60e-106 310
MS.gene35853.t1 AT3G01190 58.555 263 105 3 1 263 63 321 4.69e-103 303
MS.gene35853.t1 AT1G05240 52.075 265 123 3 1 263 63 325 1.35e-94 281
MS.gene35853.t1 AT1G05250 52.075 265 123 3 1 263 63 325 1.35e-94 281
MS.gene35853.t1 AT2G18150 47.566 267 135 5 1 264 73 337 5.47e-82 249
MS.gene35853.t1 AT4G36430 46.816 267 137 5 1 264 67 331 1.05e-80 246
MS.gene35853.t1 AT2G39040 50.554 271 123 8 1 263 83 350 1.82e-79 243
MS.gene35853.t1 AT5G64120 47.148 263 133 5 1 263 72 328 5.52e-79 241
MS.gene35853.t1 AT5G14130 46.792 265 136 4 1 263 69 330 2.62e-77 237
MS.gene35853.t1 AT2G18140 44.944 267 142 5 1 264 72 336 4.52e-77 237
MS.gene35853.t1 AT5G14130 46.792 265 136 4 1 263 110 371 8.94e-77 237
MS.gene35853.t1 AT5G66390 47.191 267 136 5 1 264 70 334 2.80e-76 235
MS.gene35853.t1 AT1G49570 46.241 266 136 6 1 261 85 348 5.49e-76 234
MS.gene35853.t1 AT5G06730 44.569 267 142 5 1 263 70 334 1.40e-75 234
MS.gene35853.t1 AT2G38390 45.896 268 138 6 1 263 68 333 9.73e-75 231
MS.gene35853.t1 AT3G50990 45.489 266 142 3 1 264 78 342 2.34e-73 228
MS.gene35853.t1 AT3G03670 43.182 264 147 3 1 263 60 321 8.17e-73 226
MS.gene35853.t1 AT5G51890 47.191 267 130 8 1 263 63 322 2.31e-72 224
MS.gene35853.t1 AT2G41480 44.944 267 139 5 1 263 66 328 4.94e-72 224
MS.gene35853.t1 AT5G06720 43.820 267 144 5 1 263 69 333 1.13e-71 223
MS.gene35853.t1 AT5G39580 44.697 264 139 6 1 263 62 319 1.25e-71 223
MS.gene35853.t1 AT2G38380 44.403 268 142 6 1 263 68 333 1.29e-71 223
MS.gene35853.t1 AT5G17820 44.106 263 137 4 1 263 61 313 1.78e-71 222
MS.gene35853.t1 AT5G42180 43.726 263 141 5 1 262 60 316 2.77e-71 221
MS.gene35853.t1 AT5G17820 44.106 263 137 4 1 263 114 366 3.18e-70 220
MS.gene35853.t1 AT3G32980 42.222 270 148 6 1 264 68 335 1.34e-69 218
MS.gene35853.t1 AT1G44970 45.693 267 139 5 1 263 82 346 1.69e-69 218
MS.gene35853.t1 AT5G64110 42.264 265 146 4 1 263 71 330 2.99e-69 217
MS.gene35853.t1 AT3G49110 43.333 270 145 6 1 264 70 337 1.65e-68 216
MS.gene35853.t1 AT3G49120 42.963 270 146 6 1 264 69 336 3.98e-68 214
MS.gene35853.t1 AT5G19890 42.751 269 142 7 1 264 67 328 5.89e-68 213
MS.gene35853.t1 AT4G08770 42.963 270 146 6 1 264 61 328 8.28e-68 214
MS.gene35853.t1 AT2G24800 41.667 264 147 4 3 263 70 329 3.54e-66 209
MS.gene35853.t1 AT5G05340 42.481 266 142 5 1 263 67 324 3.85e-66 209
MS.gene35853.t1 AT5G58390 43.774 265 133 8 1 259 58 312 1.65e-65 207
MS.gene35853.t1 AT4G25980 41.791 268 147 5 1 263 63 326 2.22e-65 207
MS.gene35853.t1 AT2G18980 42.322 267 145 5 1 263 62 323 8.59e-65 205
MS.gene35853.t1 AT4G33420 41.667 264 141 6 1 263 74 325 9.20e-65 205
MS.gene35853.t1 AT4G08780 42.222 270 148 6 1 264 61 328 1.20e-64 206
MS.gene35853.t1 AT5G64100 42.481 266 142 6 1 263 74 331 1.43e-64 205
MS.gene35853.t1 AT1G77100 42.697 267 141 5 1 263 61 319 1.48e-64 204
MS.gene35853.t1 AT5G19880 43.333 270 144 6 1 263 62 329 1.69e-64 204
MS.gene35853.t1 AT4G33420 41.667 264 141 6 1 263 121 372 3.86e-64 205
MS.gene35853.t1 AT1G71695 43.446 267 139 7 1 263 81 339 4.16e-64 204
MS.gene35853.t1 AT1G14550 41.573 267 144 7 1 263 63 321 9.33e-64 202
MS.gene35853.t1 AT4G31760 42.593 270 139 8 1 263 66 326 1.58e-62 199
MS.gene35853.t1 AT4G37530 41.045 268 151 5 1 263 64 329 7.22e-62 198
MS.gene35853.t1 AT4G16270 40.602 266 151 6 1 263 87 348 1.28e-61 198
MS.gene35853.t1 AT2G35380 39.194 273 152 5 1 263 67 335 2.17e-61 197
MS.gene35853.t1 AT1G68850 37.037 270 162 6 1 263 67 335 4.81e-61 196
MS.gene35853.t1 AT1G14540 39.474 266 150 6 1 263 58 315 8.08e-61 195
MS.gene35853.t1 AT5G67400 39.552 268 155 5 1 263 64 329 1.53e-59 192
MS.gene35853.t1 AT4G26010 39.850 266 144 7 1 264 59 310 1.91e-59 191
MS.gene35853.t1 AT4G26010 39.850 266 144 7 1 264 87 338 3.62e-59 191
MS.gene35853.t1 AT2G22420 40.152 264 151 6 2 263 61 319 3.83e-59 191
MS.gene35853.t1 AT5G58400 41.887 265 138 8 1 259 67 321 4.26e-59 191
MS.gene35853.t1 AT4G37520 39.552 268 155 5 1 263 64 329 5.96e-59 190
MS.gene35853.t1 AT4G33870 36.395 294 149 5 3 260 107 398 7.09e-59 192
MS.gene35853.t1 AT4G30170 38.577 267 155 5 1 263 64 325 4.86e-58 188
MS.gene35853.t1 AT5G22410 39.015 264 149 7 1 259 65 321 1.43e-57 187
MS.gene35853.t1 AT1G30870 40.152 264 149 5 3 264 90 346 1.51e-57 187
MS.gene35853.t1 AT2G34060 39.245 265 154 4 1 259 79 342 1.89e-57 187
MS.gene35853.t1 AT4G37520 39.552 268 152 6 1 263 64 326 3.36e-57 186
MS.gene35853.t1 AT4G17690 38.806 268 151 7 1 263 63 322 4.03e-57 186
MS.gene35853.t1 AT5G24070 38.202 267 152 6 3 263 76 335 4.15e-57 186
MS.gene35853.t1 AT2G43480 37.736 265 156 4 3 263 76 335 7.48e-57 185
MS.gene35853.t1 AT3G49960 38.060 268 159 5 1 263 64 329 4.51e-56 183
MS.gene35853.t1 AT5G47000 39.927 273 144 9 1 264 70 331 2.94e-55 181
MS.gene35853.t1 AT1G34510 37.218 266 151 7 1 264 59 310 4.34e-53 175
MS.gene35853.t1 AT2G35380 37.751 249 142 4 24 263 3 247 2.48e-52 171
MS.gene35853.t1 AT4G37530 41.096 219 123 4 1 214 64 281 4.26e-51 169
MS.gene35853.t1 AT1G24110 35.688 269 164 5 1 264 59 323 2.03e-50 168
MS.gene35853.t1 AT5G40150 36.090 266 161 4 1 263 69 328 1.10e-49 166
MS.gene35853.t1 AT4G21960 35.472 265 160 6 3 263 70 327 1.14e-48 164
MS.gene35853.t1 AT3G28200 35.955 267 159 6 1 263 58 316 1.18e-48 163
MS.gene35853.t1 AT3G17070 33.708 267 171 5 1 263 75 339 1.53e-43 150
MS.gene35853.t1 AT2G37130 33.835 266 164 6 3 263 38 296 3.02e-41 144
MS.gene35853.t1 AT2G37130 33.835 266 164 6 3 263 69 327 6.25e-41 144
MS.gene35853.t1 AT3G17070 33.206 262 168 6 6 263 18 276 6.37e-40 140
MS.gene35853.t1 AT4G25980 43.103 174 90 4 1 168 108 278 3.85e-39 138
MS.gene35853.t1 AT5G39580 52.308 130 59 2 1 130 62 188 3.55e-37 131
MS.gene35853.t1 AT2G24800 45.669 127 67 1 1 127 68 192 4.29e-32 118
MS.gene35853.t1 AT3G42570 37.168 113 69 2 19 129 37 149 5.24e-16 73.6

Find 0 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATACTTTCATTTCATTTT+TGG - 15132:9483-9502 MS.gene35853:CDS 15.0%
!! CCTGAAAAAAATTTATATCA+TGG + 15132:10214-10233 None:intergenic 20.0%
!!! AACATTAAGCATTTTGATTT+AGG - 15132:9532-9551 MS.gene35853:CDS 20.0%
!!! ACATTAAGCATTTTGATTTA+GGG - 15132:9533-9552 MS.gene35853:CDS 20.0%
!!! CCATGATATAAATTTTTTTC+AGG - 15132:10211-10230 MS.gene35853:intron 20.0%
! ATTCTATCTTTAACAGACTA+AGG - 15132:9754-9773 MS.gene35853:CDS 25.0%
! TATCTATCTACTGATACATT+TGG - 15132:9848-9867 MS.gene35853:intron 25.0%
! TGAATGTAATAATACCAGAT+AGG + 15132:10045-10064 None:intergenic 25.0%
! TTCCAGTAAAATTGTACAAA+CGG + 15132:10279-10298 None:intergenic 25.0%
!! TTGTACAATTTTACTGGAAA+GGG - 15132:10280-10299 MS.gene35853:intron 25.0%
!! TTTGTACAATTTTACTGGAA+AGG - 15132:10279-10298 MS.gene35853:intron 25.0%
!! TTTTAAATCAAGTCCTTGAT+TGG + 15132:10011-10030 None:intergenic 25.0%
ATAGAATTGAGTACTTACTG+TGG + 15132:9741-9760 None:intergenic 30.0%
ATGTAATAATACCAGATAGG+AGG + 15132:10042-10061 None:intergenic 30.0%
GCAAAATCAATGGAGAAAAT+GGG - 15132:10559-10578 MS.gene35853:intron 30.0%
TCTTACACTTGAATGTCTTT+AGG + 15132:10345-10364 None:intergenic 30.0%
TGCAAAATCAATGGAGAAAA+TGG - 15132:10558-10577 MS.gene35853:intron 30.0%
TGCTGAATTTGCAAAATCAA+TGG - 15132:10549-10568 MS.gene35853:intron 30.0%
TTAAATAAGCCAATCCAAAC+AGG + 15132:9780-9799 None:intergenic 30.0%
! AACCGTTTGTACAATTTTAC+TGG - 15132:10274-10293 MS.gene35853:intron 30.0%
! ACTTTCATGATTGCTTTGTT+AGG - 15132:9433-9452 MS.gene35853:CDS 30.0%
! ATTTGGTGATTTGTGATTTC+AGG - 15132:9865-9884 MS.gene35853:intron 30.0%
! CTTTCATGATTGCTTTGTTA+GGG - 15132:9434-9453 MS.gene35853:CDS 30.0%
! TTTGGTGATTTGTGATTTCA+GGG - 15132:9866-9885 MS.gene35853:intron 30.0%
!! CATTTTCTAGTAGTGAACTA+TGG - 15132:10173-10192 MS.gene35853:intron 30.0%
!!! ATTTTGATTTAGGGATGTGA+TGG - 15132:9542-9561 MS.gene35853:CDS 30.0%
AAGCCTCTAACAGTAAGATT+TGG + 15132:9617-9636 None:intergenic 35.0%
AGTCGAAACACATTTGATCT+TGG - 15132:10406-10425 MS.gene35853:CDS 35.0%
ATCAAATGTGTTTCGACTTC+CGG + 15132:10404-10423 None:intergenic 35.0%
CAATACCACAATAGTCGAAA+TGG - 15132:10375-10394 MS.gene35853:CDS 35.0%
CTTGTGAATCAATTCCTTCA+AGG - 15132:10508-10527 MS.gene35853:intron 35.0%
GACAAGTTAAAGTCAAGACA+GGG - 15132:10581-10600 MS.gene35853:intron 35.0%
GCATATTCACTATCAAGTGA+TGG + 15132:10316-10335 None:intergenic 35.0%
!!! GAGCATTTTTTTCAGCTTGT+TGG + 15132:9592-9611 None:intergenic 35.0%
AAAGACTTAGTCCTCCTATC+TGG - 15132:10028-10047 MS.gene35853:CDS 40.0%
ATTGGCAAAGAGAGTTTGGA+GGG + 15132:9993-10012 None:intergenic 40.0%
CAAACTCTCTTTGCCAATCA+AGG - 15132:9995-10014 MS.gene35853:intron 40.0%
CCATATTGGAAAGTTCCAAC+AGG - 15132:9893-9912 MS.gene35853:intron 40.0%
CCTCCAAATCTTACTGTTAG+AGG - 15132:9611-9630 MS.gene35853:CDS 40.0%
CCTCTAACAGTAAGATTTGG+AGG + 15132:9614-9633 None:intergenic 40.0%
CCTGTTGGAACTTTCCAATA+TGG + 15132:9896-9915 None:intergenic 40.0%
CTTGATTGGCAAAGAGAGTT+TGG + 15132:9997-10016 None:intergenic 40.0%
GAAAGTTCCAACAGGTAGAA+GGG - 15132:9901-9920 MS.gene35853:intron 40.0%
GGACAAGTTAAAGTCAAGAC+AGG - 15132:10580-10599 MS.gene35853:intron 40.0%
TCAAATGTGTTTCGACTTCC+GGG + 15132:10403-10422 None:intergenic 40.0%
TGGAGTCGTATCGAATTTGT+TGG - 15132:9925-9944 MS.gene35853:intron 40.0%
TTAACAGACTAAGGCCTGTT+TGG - 15132:9763-9782 MS.gene35853:CDS 40.0%
! AAGTTTCAAGTGAGCCTTGA+AGG + 15132:10525-10544 None:intergenic 40.0%
! AGTCAAGTTGTCAAGAGAAG+AGG - 15132:10436-10455 MS.gene35853:CDS 40.0%
!! GACGAAAGTGCTTAATGCTA+AGG + 15132:10075-10094 None:intergenic 40.0%
!! GTTGGTTTGTTGAGTTCAGA+AGG + 15132:9574-9593 None:intergenic 40.0%
!!! TTTTCAGGTGCTCACACAAT+TGG - 15132:10226-10245 MS.gene35853:intron 40.0%
AAAGTCAAGACAGGGTCACA+AGG - 15132:10589-10608 MS.gene35853:intron 45.0%
ACAATAGTCGAAATGGACCC+CGG - 15132:10382-10401 MS.gene35853:CDS 45.0%
AGACTAAGGCCTGTTTGGAT+TGG - 15132:9768-9787 MS.gene35853:CDS 45.0%
AGGGTGGTGAAGTTGGAAAA+TGG + 15132:9974-9993 None:intergenic 45.0%
CAAATGTGTTTCGACTTCCG+GGG + 15132:10402-10421 None:intergenic 45.0%
CAGCACAAGAAACAACACCA+GGG + 15132:9682-9701 None:intergenic 45.0%
GATTGGCAAAGAGAGTTTGG+AGG + 15132:9994-10013 None:intergenic 45.0%
GATTTCAGGGTGGTCCATAT+TGG - 15132:9879-9898 MS.gene35853:intron 45.0%
GGAAAGTTCCAACAGGTAGA+AGG - 15132:9900-9919 MS.gene35853:intron 45.0%
GTGAAGTTGGAAAATGGAGC+AGG + 15132:9968-9987 None:intergenic 45.0%
TCAGCACAAGAAACAACACC+AGG + 15132:9683-9702 None:intergenic 45.0%
! GGTGATTTGTGATTTCAGGG+TGG - 15132:9869-9888 MS.gene35853:intron 45.0%
ACTCCATCCCTTCTACCTGT+TGG + 15132:9911-9930 None:intergenic 50.0%
AGTTTGGAGGGTGGTGAAGT+TGG + 15132:9981-10000 None:intergenic 50.0%
CAGGGTCACAAGGTGTGATT+AGG - 15132:10599-10618 MS.gene35853:intron 50.0%
CTTGTTGAAGCTGAATGCCC+TGG - 15132:9662-9681 MS.gene35853:CDS 50.0%
GGGGTCCATTTCGACTATTG+TGG + 15132:10383-10402 None:intergenic 50.0%
GTTCCAACAGGTAGAAGGGA+TGG - 15132:9905-9924 MS.gene35853:intron 50.0%
TGTGGCTGCAATAGAGTCTC+TGG + 15132:9723-9742 None:intergenic 50.0%
! CAGGGCATTCAGCTTCAACA+AGG + 15132:9664-9683 None:intergenic 50.0%
GGCAAAGAGAGTTTGGAGGG+TGG + 15132:9990-10009 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
15132 gene 9429 10648 9429 ID=MS.gene35853
15132 mRNA 9429 10648 9429 ID=MS.gene35853.t1;Parent=MS.gene35853
15132 exon 10622 10648 10622 ID=MS.gene35853.t1.exon1;Parent=MS.gene35853.t1
15132 CDS 10622 10648 10622 ID=cds.MS.gene35853.t1;Parent=MS.gene35853.t1
15132 exon 10335 10523 10335 ID=MS.gene35853.t1.exon2;Parent=MS.gene35853.t1
15132 CDS 10335 10523 10335 ID=cds.MS.gene35853.t1;Parent=MS.gene35853.t1
15132 exon 10028 10190 10028 ID=MS.gene35853.t1.exon3;Parent=MS.gene35853.t1
15132 CDS 10028 10190 10028 ID=cds.MS.gene35853.t1;Parent=MS.gene35853.t1
15132 exon 9429 9844 9429 ID=MS.gene35853.t1.exon4;Parent=MS.gene35853.t1
15132 CDS 9429 9844 9429 ID=cds.MS.gene35853.t1;Parent=MS.gene35853.t1
Gene Sequence

>MS.gene35853

ATGCACTTTCATGATTGCTTTGTTAGGGTATGAAGTTCAAGCTTAATTATATGCTTATACTTTCATTTCATTTTTGGTTATGTAATGTGAAAATTGATTCACTAACATTAAGCATTTTGATTTAGGGATGTGATGGATCAGTCCTTCTGAACTCAACAAACCAACAAGCTGAAAAAAATGCTCCTCCAAATCTTACTGTTAGAGGCTTTGACTTCATTGACAGAATAAAGAGCCTTGTTGAAGCTGAATGCCCTGGTGTTGTTTCTTGTGCTGATATCATAGCTTTATCTGCCAGAGACTCTATTGCAGCCACAGTAAGTACTCAATTCTATCTTTAACAGACTAAGGCCTGTTTGGATTGGCTTATTTAAGCTTATCTACTGTTTATAAGCTCTTTAAGTAGCTTAAGATTGCAAGCTTATCTATCTACTGATACATTTGGTGATTTGTGATTTCAGGGTGGTCCATATTGGAAAGTTCCAACAGGTAGAAGGGATGGAGTCGTATCGAATTTGTTGGAAGCAAATCAAAACATTCCTGCTCCATTTTCCAACTTCACCACCCTCCAAACTCTCTTTGCCAATCAAGGACTTGATTTAAAAGACTTAGTCCTCCTATCTGGTATTATTACATTCAACAATTTCCTTAGCATTAAGCACTTTCGTCGTGCACGCTAAATGAAATAATTAGTGACAACTTTTTATTTCATTTTATCTTGTCTTTCAATTTTTGTCTTTTATTCAACATTTTCTAGTAGTGAACTATGGTTTTAATCTTAATGACCATGATATAAATTTTTTTCAGGTGCTCACACAATTGGTATCTCACTTTGCACATCATTTTCAAACCGTTTGTACAATTTTACTGGAAAGGGTGATCAAGATCCATCACTTGATAGTGAATATGCACAAAACCTAAAGACATTCAAGTGTAAGAACATCAATGACAATACCACAATAGTCGAAATGGACCCCGGAAGTCGAAACACATTTGATCTTGGTTACTATAGTCAAGTTGTCAAGAGAAGAGGTTTGTTTCAGTCTGATTCTGCATTGTTGACAAATTCAGTAACAAAAGCTCTTGTGAATCAATTCCTTCAAGGCTCACTTGAAACTTTCTATGCTGAATTTGCAAAATCAATGGAGAAAATGGGACAAGTTAAAGTCAAGACAGGGTCACAAGGTGTGATTAGGAAGCATTGTGCACTTGTAAATAACTAA

Protein sequence

>MS.gene35853.t1

MHFHDCFVRGCDGSVLLNSTNQQAEKNAPPNLTVRGFDFIDRIKSLVEAECPGVVSCADIIALSARDSIAATGGPYWKVPTGRRDGVVSNLLEANQNIPAPFSNFTTLQTLFANQGLDLKDLVLLSGAHTIGISLCTSFSNRLYNFTGKGDQDPSLDSEYAQNLKTFKCKNINDNTTIVEMDPGSRNTFDLGYYSQVVKRRGLFQSDSALLTNSVTKALVNQFLQGSLETFYAEFAKSMEKMGQVKVKTGSQGVIRKHCALVNN