Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052878.t1 | ACL36992.1 | 98.6 | 282 | 4 | 0 | 1 | 282 | 1 | 282 | 2.40E-157 | 564.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052878.t1 | P27054 | 72.5 | 280 | 66 | 4 | 4 | 282 | 1 | 270 | 1.4e-108 | 394.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052878.t1 | B8Y647 | 98.6 | 282 | 4 | 0 | 1 | 282 | 1 | 282 | 1.7e-157 | 564.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052878 | MS.gene057999 | 0.802144 | 6.45E-49 | -1.69E-46 |
MS.gene052878 | MS.gene53961 | 0.998459 | 1.05E-265 | -1.69E-46 |
MS.gene052878 | MS.gene57704 | 0.800834 | 1.20E-48 | -1.69E-46 |
MS.gene052878 | MS.gene58768 | 0.8113 | 7.50E-51 | -1.69E-46 |
MS.gene052878 | MS.gene58769 | 0.802683 | 4.99E-49 | -1.69E-46 |
MS.gene052878 | MS.gene58793 | 0.807239 | 5.57E-50 | -1.69E-46 |
MS.gene052878 | MS.gene80269 | 0.801026 | 1.09E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052878.t1 | MTR_2g099470 | 97.163 | 282 | 8 | 0 | 1 | 282 | 1 | 282 | 0.0 | 571 |
MS.gene052878.t1 | MTR_2g099465 | 81.140 | 228 | 40 | 2 | 58 | 282 | 27 | 254 | 8.03e-141 | 397 |
MS.gene052878.t1 | MTR_3g118390 | 36.677 | 319 | 147 | 10 | 7 | 282 | 54 | 360 | 1.27e-58 | 192 |
MS.gene052878.t1 | MTR_8g074350 | 36.646 | 322 | 152 | 9 | 4 | 282 | 1 | 313 | 2.93e-57 | 186 |
MS.gene052878.t1 | MTR_7g110780 | 39.241 | 237 | 108 | 6 | 81 | 282 | 36 | 271 | 1.46e-53 | 176 |
MS.gene052878.t1 | MTR_8g074330 | 37.248 | 298 | 138 | 9 | 30 | 282 | 20 | 313 | 4.38e-53 | 176 |
MS.gene052878.t1 | MTR_8g074335 | 37.282 | 287 | 140 | 9 | 31 | 282 | 21 | 302 | 5.59e-47 | 159 |
MS.gene052878.t1 | MTR_2g099450 | 77.500 | 80 | 18 | 0 | 1 | 80 | 1 | 80 | 1.43e-39 | 136 |
MS.gene052878.t1 | MTR_2g099450 | 59.167 | 120 | 20 | 2 | 162 | 281 | 84 | 174 | 3.35e-37 | 130 |
MS.gene052878.t1 | MTR_2g034680 | 31.120 | 241 | 121 | 8 | 86 | 282 | 62 | 301 | 5.33e-24 | 99.4 |
MS.gene052878.t1 | MTR_1g105535 | 29.185 | 233 | 119 | 6 | 91 | 282 | 80 | 307 | 1.29e-20 | 90.1 |
MS.gene052878.t1 | MTR_7g021640 | 28.182 | 220 | 114 | 7 | 106 | 282 | 86 | 304 | 1.26e-18 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052878.t1 | AT3G54420 | 67.164 | 268 | 83 | 2 | 15 | 282 | 11 | 273 | 1.81e-135 | 384 |
MS.gene052878.t1 | AT2G43590 | 56.863 | 255 | 100 | 3 | 28 | 282 | 20 | 264 | 6.81e-106 | 308 |
MS.gene052878.t1 | AT2G43580 | 52.941 | 255 | 111 | 3 | 28 | 282 | 20 | 265 | 1.55e-96 | 285 |
MS.gene052878.t1 | AT2G43570 | 52.045 | 269 | 111 | 7 | 21 | 282 | 20 | 277 | 4.51e-89 | 266 |
MS.gene052878.t1 | AT2G43620 | 46.043 | 278 | 129 | 8 | 18 | 282 | 14 | 283 | 1.99e-83 | 252 |
MS.gene052878.t1 | AT2G43610 | 45.230 | 283 | 136 | 7 | 11 | 282 | 7 | 281 | 8.39e-83 | 250 |
MS.gene052878.t1 | AT3G47540 | 46.875 | 224 | 96 | 5 | 60 | 282 | 13 | 214 | 3.58e-63 | 198 |
MS.gene052878.t1 | AT1G56680 | 39.785 | 279 | 148 | 11 | 15 | 282 | 11 | 280 | 9.75e-61 | 194 |
MS.gene052878.t1 | AT1G56680 | 39.785 | 279 | 148 | 11 | 15 | 282 | 34 | 303 | 2.43e-60 | 194 |
MS.gene052878.t1 | AT3G47540 | 45.701 | 221 | 97 | 5 | 60 | 279 | 13 | 211 | 1.13e-58 | 189 |
MS.gene052878.t1 | AT3G12500 | 39.286 | 280 | 132 | 6 | 37 | 282 | 45 | 320 | 2.99e-55 | 182 |
MS.gene052878.t1 | AT2G43600 | 35.563 | 284 | 160 | 11 | 11 | 282 | 1 | 273 | 7.49e-54 | 176 |
MS.gene052878.t1 | AT2G43600 | 35.563 | 284 | 160 | 11 | 11 | 282 | 22 | 294 | 1.51e-53 | 176 |
MS.gene052878.t1 | AT1G02360 | 39.496 | 238 | 108 | 5 | 80 | 282 | 29 | 265 | 5.28e-53 | 174 |
MS.gene052878.t1 | AT1G02360 | 39.496 | 238 | 108 | 5 | 80 | 282 | 75 | 311 | 1.21e-52 | 174 |
MS.gene052878.t1 | AT1G02360 | 39.496 | 238 | 108 | 5 | 80 | 282 | 81 | 317 | 1.21e-52 | 174 |
MS.gene052878.t1 | AT4G01700 | 38.912 | 239 | 110 | 5 | 79 | 282 | 36 | 273 | 7.47e-50 | 166 |
MS.gene052878.t1 | AT1G05850 | 26.609 | 233 | 125 | 7 | 91 | 282 | 77 | 304 | 2.14e-20 | 89.4 |
MS.gene052878.t1 | AT1G05850 | 26.609 | 233 | 125 | 7 | 91 | 282 | 77 | 304 | 2.14e-20 | 89.4 |
MS.gene052878.t1 | AT3G16920 | 27.126 | 247 | 134 | 9 | 81 | 282 | 68 | 313 | 6.26e-19 | 85.5 |
MS.gene052878.t1 | AT3G16920 | 27.126 | 247 | 134 | 9 | 81 | 282 | 92 | 337 | 8.35e-19 | 85.5 |
Find 72 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCATCATTGGCCACTGTTTC+AGG | 0.200039 | 4.2:-59642385 | None:intergenic |
AACCATGATCATAATGAAAA+AGG | 0.269135 | 4.2:-59641608 | None:intergenic |
CGACCGTAGTAACCTTTGTT+AGG | 0.286313 | 4.2:-59642286 | None:intergenic |
CTATCTTGGAACTACAACTA+TGG | 0.300245 | 4.2:+59642322 | MS.gene052878:CDS |
TCATCACAGTAGTCCTTTGA+TGG | 0.329355 | 4.2:-59642238 | None:intergenic |
AAGGCTTTGGTGCAACCATT+AGG | 0.341342 | 4.2:+59642470 | MS.gene052878:CDS |
GTTTGGTAGGTCTGGTACTT+TGG | 0.346077 | 4.2:+59641915 | MS.gene052878:CDS |
TCAAGACAGCATTATGGTAT+TGG | 0.355700 | 4.2:+59642419 | MS.gene052878:CDS |
TGCTATACTGAAGAGATTGA+TGG | 0.361166 | 4.2:+59642214 | MS.gene052878:CDS |
CTTAATTCTTATAATCAGTT+TGG | 0.363072 | 4.2:+59641898 | MS.gene052878:CDS |
GCTCATTTCACACATGAAAC+TGG | 0.365058 | 4.2:+59641970 | MS.gene052878:CDS |
TATAATCAGTTTGGTAGGTC+TGG | 0.371597 | 4.2:+59641907 | MS.gene052878:CDS |
GCAACCATTAGGGCTATTAA+TGG | 0.385855 | 4.2:+59642481 | MS.gene052878:CDS |
TGTCCTTCAAGACAGCATTA+TGG | 0.387076 | 4.2:+59642413 | MS.gene052878:CDS |
TGGGCAAACTTGGTGGTGTT+TGG | 0.389089 | 4.2:-59641756 | None:intergenic |
ATACCATAATGCTGTCTTGA+AGG | 0.394568 | 4.2:-59642416 | None:intergenic |
AGCAGCAGCAACCTCACGTT+TGG | 0.394614 | 4.2:-59641944 | None:intergenic |
AGGCTTTGGTGCAACCATTA+GGG | 0.395270 | 4.2:+59642471 | MS.gene052878:CDS |
GCATCATTGTTGGGCAAACT+TGG | 0.411576 | 4.2:-59641766 | None:intergenic |
GACCGTAGTAACCTTTGTTA+GGG | 0.424083 | 4.2:-59642285 | None:intergenic |
GAAGGACACAACAGCATCAT+TGG | 0.428454 | 4.2:-59642398 | None:intergenic |
CAAGCTGATTCTAGCTGTAC+AGG | 0.430968 | 4.2:+59641838 | MS.gene052878:CDS |
ACACGAGTCTGAACTGTGCT+TGG | 0.436375 | 4.2:-59642529 | None:intergenic |
TCGACCATTAATAGCCCTAA+TGG | 0.441150 | 4.2:-59642485 | None:intergenic |
GCCACATTAGCATCATTGTT+GGG | 0.442299 | 4.2:-59641775 | None:intergenic |
GGTGTCATCAACCAAGGCTT+TGG | 0.445762 | 4.2:+59642457 | MS.gene052878:CDS |
CTCTCATAATATGACTAAGA+TGG | 0.448722 | 4.2:+59641543 | None:intergenic |
GTGGACCGATTCAACTATCT+TGG | 0.452579 | 4.2:+59642308 | MS.gene052878:CDS |
CAAATCACTATGCATATGTA+TGG | 0.454246 | 4.2:+59641570 | MS.gene052878:CDS |
AGTGAGTTGGGTGTTGCTCC+TGG | 0.457642 | 4.2:+59642574 | MS.gene052878:CDS |
CACTCAATATTGTAGTGAGT+TGG | 0.467919 | 4.2:+59642561 | MS.gene052878:CDS |
AGCCACATTAGCATCATTGT+TGG | 0.473861 | 4.2:-59641776 | None:intergenic |
GGAGTGTGTTGCAGCCAATA+CGG | 0.476582 | 4.2:+59641670 | MS.gene052878:CDS |
TATTGAAGAAATCTTGTGTA+AGG | 0.478357 | 4.2:-59641804 | None:intergenic |
CATTACCACAATACCCGTAT+TGG | 0.482956 | 4.2:-59641684 | None:intergenic |
ACTCAATATTGTAGTGAGTT+GGG | 0.486051 | 4.2:+59642562 | MS.gene052878:CDS |
TGGTGATAATCTTACTTGCT+AGG | 0.487565 | 4.2:+59642594 | MS.gene052878:CDS |
TCTCATAATATGACTAAGAT+GGG | 0.495273 | 4.2:+59641544 | None:intergenic |
CAATACGGGTATTGTGGTAA+TGG | 0.497456 | 4.2:+59641685 | MS.gene052878:CDS |
TAGTTCCAAGATAGTTGAAT+CGG | 0.500260 | 4.2:-59642313 | None:intergenic |
TAATGGTTGCACCAAAGCCT+TGG | 0.502879 | 4.2:-59642468 | None:intergenic |
AACTACAACTATGGACCAGC+TGG | 0.503629 | 4.2:+59642331 | MS.gene052878:CDS |
AAACAAGGTCCTTGTTATGC+AGG | 0.505585 | 4.2:+59641733 | MS.gene052878:CDS |
CACGAGTCTGAACTGTGCTT+GGG | 0.508045 | 4.2:-59642528 | None:intergenic |
ATTCTTATAATCAGTTTGGT+AGG | 0.512286 | 4.2:+59641902 | MS.gene052878:CDS |
GAGTGTGTTGCAGCCAATAC+GGG | 0.522073 | 4.2:+59641671 | MS.gene052878:CDS |
AAACCATTGTCTCTTCCAGC+TGG | 0.544197 | 4.2:-59642346 | None:intergenic |
ATGTTAGTGCTCAAAATTGT+GGG | 0.550523 | 4.2:+59641638 | MS.gene052878:CDS |
AACAAAGGTTACTACGGTCG+TGG | 0.552838 | 4.2:+59642289 | MS.gene052878:CDS |
TAACCTTTGTTAGGGGCACA+TGG | 0.560210 | 4.2:-59642277 | None:intergenic |
TGCAGCCAATACGGGTATTG+TGG | 0.572631 | 4.2:+59641679 | MS.gene052878:CDS |
GGTGATGCATATTGTGGCAC+AGG | 0.573444 | 4.2:+59641706 | MS.gene052878:CDS |
CAAAATTGTGGGTGTGCTGA+AGG | 0.577261 | 4.2:+59641649 | MS.gene052878:CDS |
AATGTTAGTGCTCAAAATTG+TGG | 0.577445 | 4.2:+59641637 | MS.gene052878:CDS |
AGCACAGTTCAGACTCGTGT+TGG | 0.581556 | 4.2:+59642532 | MS.gene052878:CDS |
AGAGATTGATGGTCCATCAA+AGG | 0.593380 | 4.2:+59642225 | MS.gene052878:CDS |
TGTGGCACAGGATGCAAACA+AGG | 0.594512 | 4.2:+59641718 | MS.gene052878:CDS |
ATTGAACTCTCCTGAAACAG+TGG | 0.597631 | 4.2:+59642375 | MS.gene052878:CDS |
TCATTGTTGGGCAAACTTGG+TGG | 0.602286 | 4.2:-59641763 | None:intergenic |
GCCCCTAACAAAGGTTACTA+CGG | 0.616806 | 4.2:+59642283 | MS.gene052878:CDS |
TGGCCATGTGCCCCTAACAA+AGG | 0.618946 | 4.2:+59642274 | MS.gene052878:CDS |
GGTGTTTGGCCTGCATAACA+AGG | 0.624350 | 4.2:-59641742 | None:intergenic |
GGACCAGCTGGAAGAGACAA+TGG | 0.624670 | 4.2:+59642343 | MS.gene052878:CDS |
GCCCAACAATGATGCTAATG+TGG | 0.645161 | 4.2:+59641774 | MS.gene052878:CDS |
GGTAATGGTGATGCATATTG+TGG | 0.652622 | 4.2:+59641700 | MS.gene052878:CDS |
AATGGTCGACTTGAATGTGA+TGG | 0.664152 | 4.2:+59642499 | MS.gene052878:CDS |
TAGCAAGTAAGATTATCACC+AGG | 0.669122 | 4.2:-59642592 | None:intergenic |
ACCGTAGTAACCTTTGTTAG+GGG | 0.669486 | 4.2:-59642284 | None:intergenic |
TTTGGATGACTCCAAACGTG+AGG | 0.672962 | 4.2:+59641933 | MS.gene052878:CDS |
GTGCACGGTGTCATCAACCA+AGG | 0.695993 | 4.2:+59642451 | MS.gene052878:CDS |
TATTGGATGAATAATGTGCA+CGG | 0.742029 | 4.2:+59642436 | MS.gene052878:CDS |
GTGATGAAAACAACACAGAG+TGG | 0.752581 | 4.2:+59642254 | MS.gene052878:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTTAATTCTTATAATCAGTT+TGG | + | chr4.2:59641898-59641917 | MS.gene052878:CDS | 20.0% |
!!! | AAATTTGGTAACACAATTAT+TGG | + | chr4.2:59642094-59642113 | MS.gene052878:intron | 20.0% |
!!! | AATTTGGTAACACAATTATT+GGG | + | chr4.2:59642095-59642114 | MS.gene052878:intron | 20.0% |
! | AACCATGATCATAATGAAAA+AGG | - | chr4.2:59641611-59641630 | None:intergenic | 25.0% |
! | ATTCTTATAATCAGTTTGGT+AGG | + | chr4.2:59641902-59641921 | MS.gene052878:CDS | 25.0% |
! | TATTGAAGAAATCTTGTGTA+AGG | - | chr4.2:59641807-59641826 | None:intergenic | 25.0% |
!! | CTCATATTCTCTTTTTACTA+GGG | + | chr4.2:59642141-59642160 | MS.gene052878:intron | 25.0% |
!! | TCTCATATTCTCTTTTTACT+AGG | + | chr4.2:59642140-59642159 | MS.gene052878:intron | 25.0% |
!! | TTTTGAGCACTAACATTTTT+TGG | - | chr4.2:59641634-59641653 | None:intergenic | 25.0% |
!!! | CGTTAATTTTGTTTAGTTGA+TGG | - | chr4.2:59642038-59642057 | None:intergenic | 25.0% |
AATGTTAGTGCTCAAAATTG+TGG | + | chr4.2:59641637-59641656 | MS.gene052878:CDS | 30.0% | |
ACTCAATATTGTAGTGAGTT+GGG | + | chr4.2:59642562-59642581 | MS.gene052878:CDS | 30.0% | |
ATGTTAGTGCTCAAAATTGT+GGG | + | chr4.2:59641638-59641657 | MS.gene052878:CDS | 30.0% | |
CAAATCACTATGCATATGTA+TGG | + | chr4.2:59641570-59641589 | MS.gene052878:CDS | 30.0% | |
GATCATAATGAAAAAGGCTA+TGG | - | chr4.2:59641605-59641624 | None:intergenic | 30.0% | |
TAGTTCCAAGATAGTTGAAT+CGG | - | chr4.2:59642316-59642335 | None:intergenic | 30.0% | |
TATTGGATGAATAATGTGCA+CGG | + | chr4.2:59642436-59642455 | MS.gene052878:CDS | 30.0% | |
!! | AGCCTTTTTCATTATGATCA+TGG | + | chr4.2:59641606-59641625 | MS.gene052878:CDS | 30.0% |
ATACCATAATGCTGTCTTGA+AGG | - | chr4.2:59642419-59642438 | None:intergenic | 35.0% | |
CACTCAATATTGTAGTGAGT+TGG | + | chr4.2:59642561-59642580 | MS.gene052878:CDS | 35.0% | |
CTATCTTGGAACTACAACTA+TGG | + | chr4.2:59642322-59642341 | MS.gene052878:CDS | 35.0% | |
TAGCAAGTAAGATTATCACC+AGG | - | chr4.2:59642595-59642614 | None:intergenic | 35.0% | |
TATAATCAGTTTGGTAGGTC+TGG | + | chr4.2:59641907-59641926 | MS.gene052878:CDS | 35.0% | |
TCAAGACAGCATTATGGTAT+TGG | + | chr4.2:59642419-59642438 | MS.gene052878:CDS | 35.0% | |
TGCTATACTGAAGAGATTGA+TGG | + | chr4.2:59642214-59642233 | MS.gene052878:CDS | 35.0% | |
ACCGTAGTAACCTTTGTTAG+GGG | - | chr4.2:59642287-59642306 | None:intergenic | 40.0% | |
AGCCACATTAGCATCATTGT+TGG | - | chr4.2:59641779-59641798 | None:intergenic | 40.0% | |
ATTGAACTCTCCTGAAACAG+TGG | + | chr4.2:59642375-59642394 | MS.gene052878:CDS | 40.0% | |
CATTACCACAATACCCGTAT+TGG | - | chr4.2:59641687-59641706 | None:intergenic | 40.0% | |
GACCGTAGTAACCTTTGTTA+GGG | - | chr4.2:59642288-59642307 | None:intergenic | 40.0% | |
GCAACCATTAGGGCTATTAA+TGG | + | chr4.2:59642481-59642500 | MS.gene052878:CDS | 40.0% | |
GCCACATTAGCATCATTGTT+GGG | - | chr4.2:59641778-59641797 | None:intergenic | 40.0% | |
GCTCATTTCACACATGAAAC+TGG | + | chr4.2:59641970-59641989 | MS.gene052878:CDS | 40.0% | |
GTGATGAAAACAACACAGAG+TGG | + | chr4.2:59642254-59642273 | MS.gene052878:CDS | 40.0% | |
TCATCACAGTAGTCCTTTGA+TGG | - | chr4.2:59642241-59642260 | None:intergenic | 40.0% | |
TCGACCATTAATAGCCCTAA+TGG | - | chr4.2:59642488-59642507 | None:intergenic | 40.0% | |
TGTCCTTCAAGACAGCATTA+TGG | + | chr4.2:59642413-59642432 | MS.gene052878:CDS | 40.0% | |
! | AAACAAGGTCCTTGTTATGC+AGG | + | chr4.2:59641733-59641752 | MS.gene052878:CDS | 40.0% |
! | AGAGATTGATGGTCCATCAA+AGG | + | chr4.2:59642225-59642244 | MS.gene052878:CDS | 40.0% |
! | CAATACGGGTATTGTGGTAA+TGG | + | chr4.2:59641685-59641704 | MS.gene052878:CDS | 40.0% |
! | GGTAATGGTGATGCATATTG+TGG | + | chr4.2:59641700-59641719 | MS.gene052878:CDS | 40.0% |
!! | AATGGTCGACTTGAATGTGA+TGG | + | chr4.2:59642499-59642518 | MS.gene052878:CDS | 40.0% |
!!! | GGAAGAGACAATGGTTTTGA+TGG | + | chr4.2:59642352-59642371 | MS.gene052878:CDS | 40.0% |
AAACCATTGTCTCTTCCAGC+TGG | - | chr4.2:59642349-59642368 | None:intergenic | 45.0% | |
AACAAAGGTTACTACGGTCG+TGG | + | chr4.2:59642289-59642308 | MS.gene052878:CDS | 45.0% | |
AACTACAACTATGGACCAGC+TGG | + | chr4.2:59642331-59642350 | MS.gene052878:CDS | 45.0% | |
CAAAATTGTGGGTGTGCTGA+AGG | + | chr4.2:59641649-59641668 | MS.gene052878:CDS | 45.0% | |
CGACCGTAGTAACCTTTGTT+AGG | - | chr4.2:59642289-59642308 | None:intergenic | 45.0% | |
GAAGGACACAACAGCATCAT+TGG | - | chr4.2:59642401-59642420 | None:intergenic | 45.0% | |
GCATCATTGTTGGGCAAACT+TGG | - | chr4.2:59641769-59641788 | None:intergenic | 45.0% | |
GCCCAACAATGATGCTAATG+TGG | + | chr4.2:59641774-59641793 | MS.gene052878:CDS | 45.0% | |
GCCCCTAACAAAGGTTACTA+CGG | + | chr4.2:59642283-59642302 | MS.gene052878:CDS | 45.0% | |
GTTTGGTAGGTCTGGTACTT+TGG | + | chr4.2:59641915-59641934 | MS.gene052878:CDS | 45.0% | |
TAATGGTTGCACCAAAGCCT+TGG | - | chr4.2:59642471-59642490 | None:intergenic | 45.0% | |
TCATTGTTGGGCAAACTTGG+TGG | - | chr4.2:59641766-59641785 | None:intergenic | 45.0% | |
TTTGGATGACTCCAAACGTG+AGG | + | chr4.2:59641933-59641952 | MS.gene052878:CDS | 45.0% | |
! | AAGGCTTTGGTGCAACCATT+AGG | + | chr4.2:59642470-59642489 | MS.gene052878:CDS | 45.0% |
! | AGGCTTTGGTGCAACCATTA+GGG | + | chr4.2:59642471-59642490 | MS.gene052878:CDS | 45.0% |
! | CAAGCTGATTCTAGCTGTAC+AGG | + | chr4.2:59641838-59641857 | MS.gene052878:CDS | 45.0% |
! | GTGGACCGATTCAACTATCT+TGG | + | chr4.2:59642308-59642327 | MS.gene052878:CDS | 45.0% |
! | TAACCTTTGTTAGGGGCACA+TGG | - | chr4.2:59642280-59642299 | None:intergenic | 45.0% |
!! | TATTAATTTATTATCAAATT+TGG | + | chr4.2:59642079-59642098 | MS.gene052878:intron | 5.0% |
ACACGAGTCTGAACTGTGCT+TGG | - | chr4.2:59642532-59642551 | None:intergenic | 50.0% | |
AGCACAGTTCAGACTCGTGT+TGG | + | chr4.2:59642532-59642551 | MS.gene052878:CDS | 50.0% | |
CACGAGTCTGAACTGTGCTT+GGG | - | chr4.2:59642531-59642550 | None:intergenic | 50.0% | |
GAGTGTGTTGCAGCCAATAC+GGG | + | chr4.2:59641671-59641690 | MS.gene052878:CDS | 50.0% | |
GCATCATTGGCCACTGTTTC+AGG | - | chr4.2:59642388-59642407 | None:intergenic | 50.0% | |
GGAGTGTGTTGCAGCCAATA+CGG | + | chr4.2:59641670-59641689 | MS.gene052878:CDS | 50.0% | |
GGTGATGCATATTGTGGCAC+AGG | + | chr4.2:59641706-59641725 | MS.gene052878:CDS | 50.0% | |
GGTGTTTGGCCTGCATAACA+AGG | - | chr4.2:59641745-59641764 | None:intergenic | 50.0% | |
TGTGGCACAGGATGCAAACA+AGG | + | chr4.2:59641718-59641737 | MS.gene052878:CDS | 50.0% | |
! | GGTGTCATCAACCAAGGCTT+TGG | + | chr4.2:59642457-59642476 | MS.gene052878:CDS | 50.0% |
! | TGCAGCCAATACGGGTATTG+TGG | + | chr4.2:59641679-59641698 | MS.gene052878:CDS | 50.0% |
!! | TGGGCAAACTTGGTGGTGTT+TGG | - | chr4.2:59641759-59641778 | None:intergenic | 50.0% |
AGCAGCAGCAACCTCACGTT+TGG | - | chr4.2:59641947-59641966 | None:intergenic | 55.0% | |
GGACCAGCTGGAAGAGACAA+TGG | + | chr4.2:59642343-59642362 | MS.gene052878:CDS | 55.0% | |
TGGCCATGTGCCCCTAACAA+AGG | + | chr4.2:59642274-59642293 | MS.gene052878:CDS | 55.0% | |
!! | AGTGAGTTGGGTGTTGCTCC+TGG | + | chr4.2:59642574-59642593 | MS.gene052878:CDS | 55.0% |
!! | GTGCACGGTGTCATCAACCA+AGG | + | chr4.2:59642451-59642470 | MS.gene052878:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 59641553 | 59642615 | 59641553 | ID=MS.gene052878 |
chr4.2 | mRNA | 59641553 | 59642615 | 59641553 | ID=MS.gene052878.t1;Parent=MS.gene052878 |
chr4.2 | exon | 59641553 | 59641994 | 59641553 | ID=MS.gene052878.t1.exon1;Parent=MS.gene052878.t1 |
chr4.2 | CDS | 59641553 | 59641994 | 59641553 | ID=cds.MS.gene052878.t1;Parent=MS.gene052878.t1 |
chr4.2 | exon | 59642209 | 59642615 | 59642209 | ID=MS.gene052878.t1.exon2;Parent=MS.gene052878.t1 |
chr4.2 | CDS | 59642209 | 59642615 | 59642209 | ID=cds.MS.gene052878.t1;Parent=MS.gene052878.t1 |
Gene Sequence |
Protein sequence |