Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053495.t1 | GAU19951.1 | 87.5 | 152 | 18 | 1 | 4 | 154 | 3 | 154 | 2.50E-70 | 275.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053495.t1 | Q93YN0 | 42.4 | 229 | 67 | 3 | 10 | 233 | 16 | 184 | 1.1e-39 | 164.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053495.t1 | A0A2Z6LTV8 | 87.5 | 152 | 18 | 1 | 4 | 154 | 3 | 154 | 1.8e-70 | 275.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053495 | MS.gene059778 | -0.805059 | 1.60E-49 | -1.69E-46 |
MS.gene053495 | MS.gene062288 | -0.807994 | 3.85E-50 | -1.69E-46 |
MS.gene053495 | MS.gene065510 | -0.823366 | 1.44E-53 | -1.69E-46 |
MS.gene053495 | MS.gene070025 | -0.806341 | 8.62E-50 | -1.69E-46 |
MS.gene053495 | MS.gene21085 | -0.808454 | 3.07E-50 | -1.69E-46 |
MS.gene053495 | MS.gene26513 | 0.908987 | 9.37E-82 | -1.69E-46 |
MS.gene053495 | MS.gene31336 | -0.815793 | 7.70E-52 | -1.69E-46 |
MS.gene053495 | MS.gene55785 | 0.814659 | 1.38E-51 | -1.69E-46 |
MS.gene053495 | MS.gene71891 | 0.839502 | 1.52E-57 | -1.69E-46 |
MS.gene053495 | MS.gene73783 | 0.817434 | 3.30E-52 | -1.69E-46 |
MS.gene053495 | MS.gene75415 | 0.804597 | 2.00E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053495.t1 | MTR_4g086255 | 72.043 | 186 | 30 | 5 | 1 | 177 | 1 | 173 | 9.84e-85 | 251 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene053495.t1 | AT3G19220 | 55.333 | 150 | 62 | 2 | 10 | 154 | 16 | 165 | 4.83e-49 | 159 |
Find 86 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGGAAAGATATTGATTTAA+TGG | 0.291501 | 4.3:-26629094 | MS.gene053495:CDS |
AGTTGTCAACTTGGAATAAC+TGG | 0.313953 | 4.3:-26629159 | MS.gene053495:CDS |
TTCCAAATGCATTCCTTGTA+TGG | 0.320701 | 4.3:-26631717 | MS.gene053495:CDS |
GTCTAGGATACCTCAAGTTT+GGG | 0.326383 | 4.3:+26632058 | None:intergenic |
TGCATTCCTTGTATGGGAAT+TGG | 0.330677 | 4.3:-26631710 | MS.gene053495:intron |
AGTCTAGGATACCTCAAGTT+TGG | 0.345238 | 4.3:+26632057 | None:intergenic |
GGTACTCCGCATAGATTCTT+AGG | 0.361012 | 4.3:-26629494 | MS.gene053495:CDS |
TCCCATACAAGGAATGCATT+TGG | 0.371388 | 4.3:+26631715 | None:intergenic |
AGGCGTTCATCAACGACTTC+AGG | 0.372761 | 4.3:+26632091 | None:intergenic |
TTCTACGACGGCCGAGGTGG+TGG | 0.373631 | 4.3:+26632267 | None:intergenic |
ACGAAATAGAGAAGGATATA+TGG | 0.381212 | 4.3:-26632173 | MS.gene053495:CDS |
GGAGAAACAGGAGAAGAATC+AGG | 0.384713 | 4.3:+26632112 | None:intergenic |
GGGCCGTGGGGAAAGGTCTC+CGG | 0.391665 | 4.3:+26632327 | None:intergenic |
CCGCTGCTAGACGCGCCGGC+GGG | 0.397750 | 4.3:-26632237 | MS.gene053495:CDS |
CGAGGGATAGAGGTGGGCCG+TGG | 0.399101 | 4.3:+26632313 | None:intergenic |
GTTATAGTAGCTTACATATC+CGG | 0.401921 | 4.3:+26631760 | None:intergenic |
GAAGGATATATGGTTGATAA+TGG | 0.408638 | 4.3:-26632163 | MS.gene053495:CDS |
ACCACCTCGGCCGTCGTAGA+AGG | 0.411149 | 4.3:-26632265 | MS.gene053495:CDS |
TGAAAGCTAAGGAGAGAAAA+TGG | 0.412578 | 4.3:-26632198 | MS.gene053495:CDS |
TATTGATTTAATGGAGGACT+TGG | 0.415117 | 4.3:-26629085 | MS.gene053495:CDS |
TGGTGGGGAGGGAGAGCGAC+TGG | 0.425439 | 4.3:+26632284 | None:intergenic |
TTAATGGAGGACTTGGGTAA+TGG | 0.431654 | 4.3:-26629078 | MS.gene053495:CDS |
TCAACGACTTCAGGAGAAAC+AGG | 0.446064 | 4.3:+26632100 | None:intergenic |
CAACTTGGAATAACTGGTCT+TGG | 0.457372 | 4.3:-26629153 | MS.gene053495:CDS |
CCCGCCGGCGCGTCTAGCAG+CGG | 0.458625 | 4.3:+26632237 | None:intergenic |
CTGGAAGAGACGAGGGATAG+AGG | 0.462107 | 4.3:+26632303 | None:intergenic |
TAGAGGTGGGCCGTGGGGAA+AGG | 0.462906 | 4.3:+26632320 | None:intergenic |
TTCCGCTACCGTGCTTCTGC+CGG | 0.465937 | 4.3:-26632346 | MS.gene053495:CDS |
CAAGTTTGGGGTCACATTGA+AGG | 0.467284 | 4.3:+26632071 | None:intergenic |
GTAAAGAGGTGGTTTATGAA+TGG | 0.468333 | 4.3:-26631811 | MS.gene053495:CDS |
GCCGCTGCTAGACGCGCCGG+CGG | 0.485119 | 4.3:-26632238 | MS.gene053495:CDS |
AGCTTACATATCCGGATCCT+TGG | 0.485700 | 4.3:+26631768 | None:intergenic |
TCTACGACGGCCGAGGTGGT+GGG | 0.486217 | 4.3:+26632268 | None:intergenic |
TGTCGTAGCTGCCAAGGATC+CGG | 0.492139 | 4.3:-26631779 | MS.gene053495:CDS |
TCAGGGTAAGTCATGGGAAG+TGG | 0.505112 | 4.3:+26632130 | None:intergenic |
CTACGACGGCCGAGGTGGTG+GGG | 0.506106 | 4.3:+26632269 | None:intergenic |
GACGGCCGAGGTGGTGGGGA+GGG | 0.506391 | 4.3:+26632273 | None:intergenic |
TCCAAATGCATTCCTTGTAT+GGG | 0.506555 | 4.3:-26631716 | MS.gene053495:CDS |
CGACGGCCGAGGTGGTGGGG+AGG | 0.506589 | 4.3:+26632272 | None:intergenic |
GTAAGCTACTATAACAAAAG+AGG | 0.507758 | 4.3:-26631752 | MS.gene053495:CDS |
TAAGTCATGGGAAGTGGAAG+AGG | 0.508061 | 4.3:+26632136 | None:intergenic |
GGCGCCGCTGCTAGACGCGC+CGG | 0.508225 | 4.3:-26632241 | MS.gene053495:CDS |
GAGGGATAGAGGTGGGCCGT+GGG | 0.518062 | 4.3:+26632314 | None:intergenic |
CTCCGGCAGAAGCACGGTAG+CGG | 0.523548 | 4.3:+26632344 | None:intergenic |
AGCGGCGCCACCTTCTACGA+CGG | 0.531670 | 4.3:+26632255 | None:intergenic |
GATAAGCCGCATAAATAAGA+TGG | 0.534781 | 4.3:-26629420 | MS.gene053495:CDS |
GACGCGCCGGCGGGAACGAG+TGG | 0.537435 | 4.3:-26632228 | MS.gene053495:CDS |
TAAGCTACTATAACAAAAGA+GGG | 0.541971 | 4.3:-26631751 | MS.gene053495:CDS |
CTATAACAAAAGAGGGAAAG+AGG | 0.547070 | 4.3:-26631744 | MS.gene053495:CDS |
CGGCGGGAACGAGTGGATGA+AGG | 0.547338 | 4.3:-26632221 | MS.gene053495:CDS |
GAAGATGAGGGAACTTGCAT+TGG | 0.547515 | 4.3:+26632366 | None:intergenic |
GAAGAATCAGGGTAAGTCAT+GGG | 0.548546 | 4.3:+26632124 | None:intergenic |
ATTGATTTAATGGAGGACTT+GGG | 0.552134 | 4.3:-26629084 | MS.gene053495:CDS |
GTAATGGAAAACCGTTATGA+TGG | 0.564931 | 4.3:-26629062 | None:intergenic |
AAGCACGGTAGCGGAAGATG+AGG | 0.572632 | 4.3:+26632353 | None:intergenic |
GCCACCTTCTACGACGGCCG+AGG | 0.576103 | 4.3:+26632261 | None:intergenic |
CTTCATCCACTCGTTCCCGC+CGG | 0.576282 | 4.3:+26632222 | None:intergenic |
ACCTTCTACGACGGCCGAGG+TGG | 0.577117 | 4.3:+26632264 | None:intergenic |
ATTGTAGGATTGTAAAGAGG+TGG | 0.578542 | 4.3:-26631822 | MS.gene053495:intron |
GTGGATGAAGGTGAAAGCTA+AGG | 0.585939 | 4.3:-26632209 | MS.gene053495:CDS |
GCATTACCAATTCCCATACA+AGG | 0.590823 | 4.3:+26631704 | None:intergenic |
ACCTCGGCCGTCGTAGAAGG+TGG | 0.591927 | 4.3:-26632262 | MS.gene053495:CDS |
AGAAGAATCAGGGTAAGTCA+TGG | 0.594348 | 4.3:+26632123 | None:intergenic |
TGTACACCATCTTATTTATG+CGG | 0.599223 | 4.3:+26629414 | None:intergenic |
AAATGGTCACGAAATAGAGA+AGG | 0.599995 | 4.3:-26632181 | MS.gene053495:CDS |
GAGAAACAGGAGAAGAATCA+GGG | 0.602861 | 4.3:+26632113 | None:intergenic |
GGCAAGTGTCGTAGCTGCCA+AGG | 0.605231 | 4.3:-26631785 | MS.gene053495:CDS |
AAAGGTCTCCGGCAGAAGCA+CGG | 0.606022 | 4.3:+26632338 | None:intergenic |
TTATACCACGTTATCTCTGG+GGG | 0.606216 | 4.3:-26629448 | MS.gene053495:CDS |
CTGCCGGAGACCTTTCCCCA+CGG | 0.611563 | 4.3:-26632330 | MS.gene053495:CDS |
TCAATGTGACCCCAAACTTG+AGG | 0.614543 | 4.3:-26632068 | MS.gene053495:intron |
GAAAGATATTGATTTAATGG+AGG | 0.617023 | 4.3:-26629091 | MS.gene053495:CDS |
AGGGATAGAGGTGGGCCGTG+GGG | 0.627374 | 4.3:+26632315 | None:intergenic |
GAGAACATCAACCATCATAA+CGG | 0.631195 | 4.3:+26629051 | None:intergenic |
AAGAGACGAGGGATAGAGGT+GGG | 0.633620 | 4.3:+26632307 | None:intergenic |
GAGGTGGTTTATGAATGGAC+TGG | 0.635099 | 4.3:-26631806 | MS.gene053495:CDS |
GAGAGCGACTGGAAGAGACG+AGG | 0.635228 | 4.3:+26632295 | None:intergenic |
AGAGCGACTGGAAGAGACGA+GGG | 0.639552 | 4.3:+26632296 | None:intergenic |
GAAGAGACGAGGGATAGAGG+TGG | 0.643962 | 4.3:+26632306 | None:intergenic |
TTTATACCACGTTATCTCTG+GGG | 0.649305 | 4.3:-26629449 | MS.gene053495:CDS |
AGCACGGTAGCGGAAGATGA+GGG | 0.649637 | 4.3:+26632354 | None:intergenic |
GCTCTCCCTCCCCACCACCT+CGG | 0.664061 | 4.3:-26632278 | MS.gene053495:CDS |
ATGTGCAGAAGATAACAGCT+CGG | 0.677955 | 4.3:-26629113 | MS.gene053495:CDS |
TGAATTGTAGGATTGTAAAG+AGG | 0.685981 | 4.3:-26631825 | MS.gene053495:intron |
TCTAGGATACCTCAAGTTTG+GGG | 0.700582 | 4.3:+26632059 | None:intergenic |
AAAGCACCTAAGAATCTATG+CGG | 0.722914 | 4.3:+26629488 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAAATTTTTATTTTACCT+AGG | - | chr4.3:26631856-26631875 | MS.gene053495:intron | 10.0% |
!! | AGAATCTTATTAATTCAAAT+TGG | + | chr4.3:26631713-26631732 | None:intergenic | 15.0% |
!! | CATTTATGAAAAAAAAGAAA+CGG | + | chr4.3:26631190-26631209 | None:intergenic | 15.0% |
!! | TTATGATTTATGATTTACTT+TGG | - | chr4.3:26630910-26630929 | MS.gene053495:intron | 15.0% |
!!! | TATAATGAATCATAATTTGT+TGG | + | chr4.3:26629968-26629987 | None:intergenic | 15.0% |
!! | AAAAAAATTGAGATGAGTAT+AGG | + | chr4.3:26630456-26630475 | None:intergenic | 20.0% |
!! | ATTATCATGCTAATATTCAT+AGG | + | chr4.3:26630878-26630897 | None:intergenic | 20.0% |
!! | CTTGCATATAAAAAAACTTA+GGG | + | chr4.3:26630651-26630670 | None:intergenic | 20.0% |
!! | TCTTGCATATAAAAAAACTT+AGG | + | chr4.3:26630652-26630671 | None:intergenic | 20.0% |
!! | TTAAAGCTAGATATATTCTA+CGG | - | chr4.3:26631568-26631587 | MS.gene053495:intron | 20.0% |
!! | TTCATAATTTCTAATTAGCA+GGG | - | chr4.3:26630214-26630233 | MS.gene053495:intron | 20.0% |
!! | TTTCATAATTTCTAATTAGC+AGG | - | chr4.3:26630213-26630232 | MS.gene053495:intron | 20.0% |
!!! | ATAAAAGCATGTAATGTAAT+AGG | + | chr4.3:26629778-26629797 | None:intergenic | 20.0% |
!!! | ATATTTTGATGATGAATTGT+AGG | - | chr4.3:26629607-26629626 | MS.gene053495:intron | 20.0% |
!!! | CGTTTCTTTTTTTTCATAAA+TGG | - | chr4.3:26631188-26631207 | MS.gene053495:intron | 20.0% |
!!! | TTACTTTGGCATATATTTTA+TGG | - | chr4.3:26630924-26630943 | MS.gene053495:intron | 20.0% |
!!! | TTGTTTTTATTGACTTGTTT+TGG | + | chr4.3:26631328-26631347 | None:intergenic | 20.0% |
!!! | TTGTTTTTTTAGACAACAAA+AGG | + | chr4.3:26630323-26630342 | None:intergenic | 20.0% |
! | AACATATATATGATCACACT+TGG | - | chr4.3:26630078-26630097 | MS.gene053495:intron | 25.0% |
! | AAGTGAATACAAAGAAACAA+TGG | + | chr4.3:26632245-26632264 | None:intergenic | 25.0% |
! | AATATACACATGAAATTCCT+AGG | + | chr4.3:26631876-26631895 | None:intergenic | 25.0% |
! | ACATAGAATTAAGATCATAG+AGG | + | chr4.3:26632207-26632226 | None:intergenic | 25.0% |
! | ACTCTGATATTTCCATTATA+AGG | - | chr4.3:26631533-26631552 | MS.gene053495:intron | 25.0% |
! | ACTGTATCAAATGTGTTTAA+AGG | - | chr4.3:26630049-26630068 | MS.gene053495:intron | 25.0% |
! | AGGAATTTCATGTGTATATT+AGG | - | chr4.3:26631876-26631895 | MS.gene053495:intron | 25.0% |
! | CTAAAAAAACAATTTCCCTT+TGG | - | chr4.3:26630331-26630350 | MS.gene053495:intron | 25.0% |
! | GATATAAGCTATAAGTTGTT+TGG | + | chr4.3:26629453-26629472 | None:intergenic | 25.0% |
! | TAAAGCTAGATATATTCTAC+GGG | - | chr4.3:26631569-26631588 | MS.gene053495:intron | 25.0% |
! | TAAGCTACTATAACAAAAGA+GGG | - | chr4.3:26629693-26629712 | MS.gene053495:intron | 25.0% |
! | TATAACCTGAAACCTTATAA+TGG | + | chr4.3:26631548-26631567 | None:intergenic | 25.0% |
! | TATTAAAGTAAGCAAGATGT+AGG | - | chr4.3:26631810-26631829 | MS.gene053495:CDS | 25.0% |
! | TATTTCCATTATAAGGTTTC+AGG | - | chr4.3:26631540-26631559 | MS.gene053495:intron | 25.0% |
! | TCTATGTTGAAATGGTTAAA+AGG | + | chr4.3:26631030-26631049 | None:intergenic | 25.0% |
! | TGTCCATTATATTTCAAACA+GGG | + | chr4.3:26631261-26631280 | None:intergenic | 25.0% |
! | TTGTCCATTATATTTCAAAC+AGG | + | chr4.3:26631262-26631281 | None:intergenic | 25.0% |
!! | AGTACTTGTATCTTTTACAA+AGG | + | chr4.3:26630357-26630376 | None:intergenic | 25.0% |
!!! | ATGCAGTTTTGTAATTTGTA+TGG | + | chr4.3:26630507-26630526 | None:intergenic | 25.0% |
!!! | ATGTAATGTAATAGGTTGAT+AGG | + | chr4.3:26629770-26629789 | None:intergenic | 25.0% |
!!! | GAAAGATATTGATTTAATGG+AGG | - | chr4.3:26632353-26632372 | MS.gene053495:CDS | 25.0% |
!!! | TCATTTTTACACAACAACTA+TGG | - | chr4.3:26630288-26630307 | MS.gene053495:intron | 25.0% |
!!! | TCGGAAAGATATTGATTTAA+TGG | - | chr4.3:26632350-26632369 | MS.gene053495:CDS | 25.0% |
!!! | TTCTTTGTATTCACTTTTAC+TGG | - | chr4.3:26632249-26632268 | MS.gene053495:CDS | 25.0% |
AAAGATCAATGGAATACAAG+TGG | + | chr4.3:26631620-26631639 | None:intergenic | 30.0% | |
ACGAAATAGAGAAGGATATA+TGG | - | chr4.3:26629271-26629290 | MS.gene053495:intron | 30.0% | |
ACGACATAAGTTTATCTGTT+AGG | - | chr4.3:26631111-26631130 | MS.gene053495:intron | 30.0% | |
AGTCAATAAAAACAAGATGC+TGG | - | chr4.3:26631333-26631352 | MS.gene053495:intron | 30.0% | |
ATCATGACATCTAATTCTGT+AGG | - | chr4.3:26631751-26631770 | MS.gene053495:CDS | 30.0% | |
ATGTGTATATTAGGAGTTGT+TGG | - | chr4.3:26631885-26631904 | MS.gene053495:intron | 30.0% | |
CACTATCTTCTATGTTGAAA+TGG | + | chr4.3:26631038-26631057 | None:intergenic | 30.0% | |
CATTTCAACATAGAAGATAG+TGG | - | chr4.3:26631036-26631055 | MS.gene053495:intron | 30.0% | |
GATACTAAAACTTGAGAAGA+CGG | - | chr4.3:26631065-26631084 | MS.gene053495:intron | 30.0% | |
GTAAAAATGAAAACCCTTCA+TGG | + | chr4.3:26630278-26630297 | None:intergenic | 30.0% | |
GTAAGCTACTATAACAAAAG+AGG | - | chr4.3:26629692-26629711 | MS.gene053495:intron | 30.0% | |
GTCAATAAAAACAAGATGCT+GGG | - | chr4.3:26631334-26631353 | MS.gene053495:intron | 30.0% | |
GTCATGATTCATATGACTAT+GGG | + | chr4.3:26631739-26631758 | None:intergenic | 30.0% | |
GTCCATTATATTTCAAACAG+GGG | + | chr4.3:26631260-26631279 | None:intergenic | 30.0% | |
GTTATAGTAGCTTACATATC+CGG | + | chr4.3:26629687-26629706 | None:intergenic | 30.0% | |
TACTTAATAGTGAGCTATAG+TGG | + | chr4.3:26631514-26631533 | None:intergenic | 30.0% | |
TCAATAAAAACAAGATGCTG+GGG | - | chr4.3:26631335-26631354 | MS.gene053495:intron | 30.0% | |
TGAATTGTAGGATTGTAAAG+AGG | - | chr4.3:26629619-26629638 | MS.gene053495:intron | 30.0% | |
TGTCATGATTCATATGACTA+TGG | + | chr4.3:26631740-26631759 | None:intergenic | 30.0% | |
! | AAAAGTATACCAGCACAAAA+AGG | + | chr4.3:26629809-26629828 | None:intergenic | 30.0% |
! | AAAATGTTTCAGACTAGCTA+CGG | - | chr4.3:26631443-26631462 | MS.gene053495:intron | 30.0% |
! | AACCCCTGTTTGAAATATAA+TGG | - | chr4.3:26631255-26631274 | MS.gene053495:intron | 30.0% |
! | AAGTAAGAATTCTGTTGCTT+TGG | - | chr4.3:26632067-26632086 | MS.gene053495:intron | 30.0% |
! | AATTTTCTGTTGCGTGATTT+TGG | - | chr4.3:26631681-26631700 | MS.gene053495:intron | 30.0% |
! | AGGTACCTTTTCAATAGAAA+AGG | + | chr4.3:26632187-26632206 | None:intergenic | 30.0% |
! | ATGCAGTTTTGCAATTTGTA+GGG | - | chr4.3:26630557-26630576 | MS.gene053495:intron | 30.0% |
! | ATGGACTGAAAACTGAATAT+AGG | + | chr4.3:26630488-26630507 | None:intergenic | 30.0% |
! | ATTGATTTAATGGAGGACTT+GGG | - | chr4.3:26632360-26632379 | MS.gene053495:CDS | 30.0% |
! | ATTTTATACCACGTTATCTC+TGG | - | chr4.3:26631993-26632012 | MS.gene053495:intron | 30.0% |
! | CATGCTTTTAGTCATTCTTT+AGG | - | chr4.3:26630524-26630543 | MS.gene053495:intron | 30.0% |
! | GTAAAAGCACAATGAAACAA+TGG | + | chr4.3:26631790-26631809 | None:intergenic | 30.0% |
! | TATCTTTTACAAAGGCCAAA+GGG | + | chr4.3:26630349-26630368 | None:intergenic | 30.0% |
! | TGTACACCATCTTATTTATG+CGG | + | chr4.3:26632033-26632052 | None:intergenic | 30.0% |
! | TTTTATACCACGTTATCTCT+GGG | - | chr4.3:26631994-26632013 | MS.gene053495:intron | 30.0% |
! | TTTTTCTCGACTTCTCTATA+TGG | - | chr4.3:26631637-26631656 | MS.gene053495:intron | 30.0% |
!! | AGTAAGAATTCTGTTGCTTT+GGG | - | chr4.3:26632068-26632087 | MS.gene053495:intron | 30.0% |
!! | GAAGGATATATGGTTGATAA+TGG | - | chr4.3:26629281-26629300 | MS.gene053495:intron | 30.0% |
!! | GAATCATAATTTGTTGGTAG+CGG | + | chr4.3:26629962-26629981 | None:intergenic | 30.0% |
!! | TATTGATTTAATGGAGGACT+TGG | - | chr4.3:26632359-26632378 | MS.gene053495:CDS | 30.0% |
!! | TTTTTAGTCAAGTAGCTTAG+TGG | - | chr4.3:26629855-26629874 | MS.gene053495:intron | 30.0% |
!!! | TGCTCTCAAATTATTTTGAC+TGG | - | chr4.3:26630242-26630261 | MS.gene053495:intron | 30.0% |
!!! | TGTTTTTGAAGTTGTCAACT+TGG | - | chr4.3:26632276-26632295 | MS.gene053495:CDS | 30.0% |
AAATGGTCACGAAATAGAGA+AGG | - | chr4.3:26629263-26629282 | MS.gene053495:intron | 35.0% | |
AATTTGTAGGGACTAAAAGG+GGG | - | chr4.3:26630569-26630588 | MS.gene053495:intron | 35.0% | |
ACAAGACAAGCATACAATTC+AGG | + | chr4.3:26632130-26632149 | None:intergenic | 35.0% | |
AGTTGTCAACTTGGAATAAC+TGG | - | chr4.3:26632285-26632304 | MS.gene053495:CDS | 35.0% | |
ATTGTAGGATTGTAAAGAGG+TGG | - | chr4.3:26629622-26629641 | MS.gene053495:intron | 35.0% | |
CAAAATTATACCTTCTAGCG+AGG | - | chr4.3:26631151-26631170 | MS.gene053495:intron | 35.0% | |
CAAGTGGAAACATTCTACAT+CGG | + | chr4.3:26631604-26631623 | None:intergenic | 35.0% | |
CAATTTGTAGGGACTAAAAG+GGG | - | chr4.3:26630568-26630587 | MS.gene053495:intron | 35.0% | |
CTATAACAAAAGAGGGAAAG+AGG | - | chr4.3:26629700-26629719 | MS.gene053495:intron | 35.0% | |
GAAGTCGAGAAAAAGATCAA+TGG | + | chr4.3:26631631-26631650 | None:intergenic | 35.0% | |
GATAAGCCGCATAAATAAGA+TGG | - | chr4.3:26632024-26632043 | MS.gene053495:intron | 35.0% | |
GCAATTTGTAGGGACTAAAA+GGG | - | chr4.3:26630567-26630586 | MS.gene053495:intron | 35.0% | |
GTAAAGAGGTGGTTTATGAA+TGG | - | chr4.3:26629633-26629652 | MS.gene053495:intron | 35.0% | |
TATTAATTCCAGTGCCTCTT+TGG | + | chr4.3:26631413-26631432 | None:intergenic | 35.0% | |
TCCAAATGCATTCCTTGTAT+GGG | - | chr4.3:26629728-26629747 | MS.gene053495:intron | 35.0% | |
TCTGCACATATCCTGAAAAA+CGG | + | chr4.3:26632320-26632339 | None:intergenic | 35.0% | |
TGAAAGCTAAGGAGAGAAAA+TGG | - | chr4.3:26629246-26629265 | MS.gene053495:intron | 35.0% | |
TGCAATTTGTAGGGACTAAA+AGG | - | chr4.3:26630566-26630585 | MS.gene053495:intron | 35.0% | |
TTCCAAATGCATTCCTTGTA+TGG | - | chr4.3:26629727-26629746 | MS.gene053495:intron | 35.0% | |
TTTATACCACGTTATCTCTG+GGG | - | chr4.3:26631995-26632014 | MS.gene053495:intron | 35.0% | |
! | AAAGCACCTAAGAATCTATG+CGG | + | chr4.3:26631959-26631978 | None:intergenic | 35.0% |
! | AAATGTTTCAGACTAGCTAC+GGG | - | chr4.3:26631444-26631463 | MS.gene053495:intron | 35.0% |
! | ATATGCAAAGTGTCTTGCTT+TGG | - | chr4.3:26632154-26632173 | MS.gene053495:CDS | 35.0% |
! | ATTGCAAAACTGCATGCTTT+TGG | + | chr4.3:26630552-26630571 | None:intergenic | 35.0% |
! | CATGCAGTTTTGCAATTTGT+AGG | - | chr4.3:26630556-26630575 | MS.gene053495:intron | 35.0% |
! | GTACGCCTTTTCTATTGAAA+AGG | - | chr4.3:26632179-26632198 | MS.gene053495:CDS | 35.0% |
! | GTATCTTTTACAAAGGCCAA+AGG | + | chr4.3:26630350-26630369 | None:intergenic | 35.0% |
! | TCAGACATGTCTGTATTTTG+TGG | + | chr4.3:26630111-26630130 | None:intergenic | 35.0% |
! | TTATCCCAGTACGGAATTTT+TGG | + | chr4.3:26631233-26631252 | None:intergenic | 35.0% |
!! | ACAATTTTGATGCAGGACTT+GGG | + | chr4.3:26630822-26630841 | None:intergenic | 35.0% |
!! | AGTACTGATGTACATACACT+AGG | - | chr4.3:26630371-26630390 | MS.gene053495:intron | 35.0% |
!! | ATAATTTGTTGGTAGCGGTA+AGG | + | chr4.3:26629957-26629976 | None:intergenic | 35.0% |
!! | CAACCAAGTTTTATCTCACT+AGG | + | chr4.3:26630773-26630792 | None:intergenic | 35.0% |
!! | CAAGTTTTATCTCACTAGGT+GGG | + | chr4.3:26630769-26630788 | None:intergenic | 35.0% |
!! | CATCTAGACAATTTTGATGC+AGG | + | chr4.3:26630829-26630848 | None:intergenic | 35.0% |
!! | GTAAGAATTCTGTTGCTTTG+GGG | - | chr4.3:26632069-26632088 | MS.gene053495:CDS | 35.0% |
!!! | GTATGCAGCATCTTATTTTG+AGG | - | chr4.3:26630716-26630735 | MS.gene053495:intron | 35.0% |
!!! | TCGTTTTTTCCTTTTTGTGC+TGG | - | chr4.3:26629797-26629816 | MS.gene053495:intron | 35.0% |
AAACTCACACACCTTAAGTG+TGG | - | chr4.3:26629880-26629899 | MS.gene053495:intron | 40.0% | |
ACACCTTAAGTGTGGATGAA+TGG | - | chr4.3:26629888-26629907 | MS.gene053495:intron | 40.0% | |
AGAAGAATCAGGGTAAGTCA+TGG | + | chr4.3:26629324-26629343 | None:intergenic | 40.0% | |
AGCTCCAAAAATTCCGTACT+GGG | - | chr4.3:26631226-26631245 | MS.gene053495:intron | 40.0% | |
AGGAGTCTATCTCAAATCAG+TGG | - | chr4.3:26632098-26632117 | MS.gene053495:CDS | 40.0% | |
AGTCAAACCAAAGAGAGTCT+AGG | + | chr4.3:26629405-26629424 | None:intergenic | 40.0% | |
ATATATGTAGCGAAGCCTGA+GGG | - | chr4.3:26629985-26630004 | MS.gene053495:intron | 40.0% | |
ATCCTACCACACTTTCATTG+TGG | - | chr4.3:26631925-26631944 | MS.gene053495:intron | 40.0% | |
ATGTGCAGAAGATAACAGCT+CGG | - | chr4.3:26632331-26632350 | MS.gene053495:CDS | 40.0% | |
CATTATCTCAGCCACAACTA+CGG | + | chr4.3:26631375-26631394 | None:intergenic | 40.0% | |
CCACCTAGTGAGATAAAACT+TGG | - | chr4.3:26630767-26630786 | MS.gene053495:intron | 40.0% | |
GAAGAATCAGGGTAAGTCAT+GGG | + | chr4.3:26629323-26629342 | None:intergenic | 40.0% | |
GAGAAACAGGAGAAGAATCA+GGG | + | chr4.3:26629334-26629353 | None:intergenic | 40.0% | |
GCATTACCAATTCCCATACA+AGG | + | chr4.3:26629743-26629762 | None:intergenic | 40.0% | |
GGAGTCTATCTCAAATCAGT+GGG | - | chr4.3:26632099-26632118 | MS.gene053495:CDS | 40.0% | |
TACCACACTTTCATTGTGGT+AGG | - | chr4.3:26631929-26631948 | MS.gene053495:intron | 40.0% | |
TACCTACCACAATGAAAGTG+TGG | + | chr4.3:26631934-26631953 | None:intergenic | 40.0% | |
TATATATGTAGCGAAGCCTG+AGG | - | chr4.3:26629984-26630003 | MS.gene053495:intron | 40.0% | |
TCCCATACAAGGAATGCATT+TGG | + | chr4.3:26629732-26629751 | None:intergenic | 40.0% | |
TCTCCATTCATCCACACTTA+AGG | + | chr4.3:26629894-26629913 | None:intergenic | 40.0% | |
TGCATTCCTTGTATGGGAAT+TGG | - | chr4.3:26629734-26629753 | MS.gene053495:intron | 40.0% | |
TGGCTAACATAGTCCATGAA+GGG | - | chr4.3:26630262-26630281 | MS.gene053495:intron | 40.0% | |
TGTGGATGAATGGAGAATCT+CGG | - | chr4.3:26629898-26629917 | MS.gene053495:intron | 40.0% | |
TTAATGGAGGACTTGGGTAA+TGG | - | chr4.3:26632366-26632385 | MS.gene053495:CDS | 40.0% | |
TTATACCACGTTATCTCTGG+GGG | - | chr4.3:26631996-26632015 | MS.gene053495:intron | 40.0% | |
TTTATCTCACTAGGTGGGTA+GGG | + | chr4.3:26630764-26630783 | None:intergenic | 40.0% | |
! | AGTCTAGGATACCTCAAGTT+TGG | + | chr4.3:26629390-26629409 | None:intergenic | 40.0% |
! | CAACTTGGAATAACTGGTCT+TGG | - | chr4.3:26632291-26632310 | MS.gene053495:CDS | 40.0% |
! | GTCTAGGATACCTCAAGTTT+GGG | + | chr4.3:26629389-26629408 | None:intergenic | 40.0% |
! | TACCACAATGAAAGTGTGGT+AGG | + | chr4.3:26631930-26631949 | None:intergenic | 40.0% |
! | TCTAGGATACCTCAAGTTTG+GGG | + | chr4.3:26629388-26629407 | None:intergenic | 40.0% |
! | TTTTATCTCACTAGGTGGGT+AGG | + | chr4.3:26630765-26630784 | None:intergenic | 40.0% |
!! | CCAAGTTTTATCTCACTAGG+TGG | + | chr4.3:26630770-26630789 | None:intergenic | 40.0% |
!! | GACAATTTTGATGCAGGACT+TGG | + | chr4.3:26630823-26630842 | None:intergenic | 40.0% |
AAAACAAGATGCTGGGGCTA+AGG | - | chr4.3:26631341-26631360 | MS.gene053495:intron | 45.0% | |
AAGTTTCTCTCCTCGCTAGA+AGG | + | chr4.3:26631164-26631183 | None:intergenic | 45.0% | |
AGAATCTCGGGTTCGAACTT+AGG | - | chr4.3:26629911-26629930 | MS.gene053495:intron | 45.0% | |
AGCTTACATATCCGGATCCT+TGG | + | chr4.3:26629679-26629698 | None:intergenic | 45.0% | |
CAGCTCCAAAAATTCCGTAC+TGG | - | chr4.3:26631225-26631244 | MS.gene053495:intron | 45.0% | |
CTGGCTAACATAGTCCATGA+AGG | - | chr4.3:26630261-26630280 | MS.gene053495:intron | 45.0% | |
GAAGATGAGGGAACTTGCAT+TGG | + | chr4.3:26629081-26629100 | None:intergenic | 45.0% | |
GAATCTCGGGTTCGAACTTA+GGG | - | chr4.3:26629912-26629931 | MS.gene053495:intron | 45.0% | |
GAGGTGGTTTATGAATGGAC+TGG | - | chr4.3:26629638-26629657 | MS.gene053495:intron | 45.0% | |
GGAGAAACAGGAGAAGAATC+AGG | + | chr4.3:26629335-26629354 | None:intergenic | 45.0% | |
GGTACTCCGCATAGATTCTT+AGG | - | chr4.3:26631950-26631969 | MS.gene053495:intron | 45.0% | |
GTGGATGAAGGTGAAAGCTA+AGG | - | chr4.3:26629235-26629254 | MS.gene053495:intron | 45.0% | |
GTGGATGAATGGAGAATCTC+GGG | - | chr4.3:26629899-26629918 | MS.gene053495:intron | 45.0% | |
TAAGTCATGGGAAGTGGAAG+AGG | + | chr4.3:26629311-26629330 | None:intergenic | 45.0% | |
TCAACGACTTCAGGAGAAAC+AGG | + | chr4.3:26629347-26629366 | None:intergenic | 45.0% | |
TCAATGTGACCCCAAACTTG+AGG | - | chr4.3:26629376-26629395 | MS.gene053495:intron | 45.0% | |
! | AGGTTTAAGTGCCGTAGTTG+TGG | - | chr4.3:26631361-26631380 | MS.gene053495:intron | 45.0% |
! | CAAGTTTGGGGTCACATTGA+AGG | + | chr4.3:26629376-26629395 | None:intergenic | 45.0% |
! | GAGGTATCCTAGACTCTCTT+TGG | - | chr4.3:26629395-26629414 | MS.gene053495:intron | 45.0% |
!! | AGGGGTTAGTTATCCCAGTA+CGG | + | chr4.3:26631242-26631261 | None:intergenic | 45.0% |
!!! | CAGTACGGAATTTTTGGAGC+TGG | + | chr4.3:26631227-26631246 | None:intergenic | 45.0% |
!!! | AAAAAAAATGTAAATTTTAT+AGG | - | chr4.3:26630603-26630622 | MS.gene053495:intron | 5.0% |
!!! | AAAAAAATGTAAATTTTATA+GGG | - | chr4.3:26630604-26630623 | MS.gene053495:intron | 5.0% |
!!! | ATAAAATTTACATTTTTTTT+TGG | + | chr4.3:26630603-26630622 | None:intergenic | 5.0% |
!!! | TAAAAAAAAAAACAATTTTT+TGG | - | chr4.3:26630412-26630431 | MS.gene053495:intron | 5.0% |
AAGAGACGAGGGATAGAGGT+GGG | + | chr4.3:26629140-26629159 | None:intergenic | 50.0% | |
ACTATCCCCCAGAGATAACG+TGG | + | chr4.3:26632004-26632023 | None:intergenic | 50.0% | |
AGGCGTTCATCAACGACTTC+AGG | + | chr4.3:26629356-26629375 | None:intergenic | 50.0% | |
TCAGGGTAAGTCATGGGAAG+TGG | + | chr4.3:26629317-26629336 | None:intergenic | 50.0% | |
TTGTGGCTGAGATAATGCCC+TGG | - | chr4.3:26631378-26631397 | MS.gene053495:intron | 50.0% | |
!!! | GGTCTTGGTGTCCGTTTTTC+AGG | - | chr4.3:26632306-26632325 | MS.gene053495:CDS | 50.0% |
AAAGGTCTCCGGCAGAAGCA+CGG | + | chr4.3:26629109-26629128 | None:intergenic | 55.0% | |
AGAGCGACTGGAAGAGACGA+GGG | + | chr4.3:26629151-26629170 | None:intergenic | 55.0% | |
CGGTAAGGACGCTGACATGT+TGG | + | chr4.3:26629942-26629961 | None:intergenic | 55.0% | |
CTCTTTGGTGAAGCCTGCCA+GGG | + | chr4.3:26631398-26631417 | None:intergenic | 55.0% | |
CTGGAAGAGACGAGGGATAG+AGG | + | chr4.3:26629144-26629163 | None:intergenic | 55.0% | |
GAAGAGACGAGGGATAGAGG+TGG | + | chr4.3:26629141-26629160 | None:intergenic | 55.0% | |
TCTCACTAGGTGGGTAGGGT+TGG | + | chr4.3:26630760-26630779 | None:intergenic | 55.0% | |
TGAGCGCTCTCAAATCCCTC+AGG | + | chr4.3:26630003-26630022 | None:intergenic | 55.0% | |
TGTCGTAGCTGCCAAGGATC+CGG | - | chr4.3:26629665-26629684 | MS.gene053495:intron | 55.0% | |
! | ACGGGCTATATGCGTGCGTT+GGG | - | chr4.3:26631462-26631481 | MS.gene053495:intron | 55.0% |
! | AGGCTTCACCAAAGAGGCAC+TGG | - | chr4.3:26631402-26631421 | MS.gene053495:intron | 55.0% |
! | AGGGACTAAAAGGGGGCACA+AGG | - | chr4.3:26630576-26630595 | MS.gene053495:intron | 55.0% |
! | TACGGGCTATATGCGTGCGT+TGG | - | chr4.3:26631461-26631480 | MS.gene053495:intron | 55.0% |
!! | AAGCACGGTAGCGGAAGATG+AGG | + | chr4.3:26629094-26629113 | None:intergenic | 55.0% |
!! | AGCACGGTAGCGGAAGATGA+GGG | + | chr4.3:26629093-26629112 | None:intergenic | 55.0% |
!! | CTGTTGCTTTGGGGTCACGT+AGG | - | chr4.3:26632078-26632097 | MS.gene053495:CDS | 55.0% |
CCTCTTTGGTGAAGCCTGCC+AGG | + | chr4.3:26631399-26631418 | None:intergenic | 60.0% | |
CCTGGCAGGCTTCACCAAAG+AGG | - | chr4.3:26631396-26631415 | MS.gene053495:intron | 60.0% | |
CTTCATCCACTCGTTCCCGC+CGG | + | chr4.3:26629225-26629244 | None:intergenic | 60.0% | |
GAGAGCGACTGGAAGAGACG+AGG | + | chr4.3:26629152-26629171 | None:intergenic | 60.0% | |
GCTATATGCGTGCGTTGGGC+TGG | - | chr4.3:26631466-26631485 | MS.gene053495:intron | 60.0% | |
GGCTGAGATAATGCCCTGGC+AGG | - | chr4.3:26631382-26631401 | MS.gene053495:intron | 60.0% | |
TTCCGCTACCGTGCTTCTGC+CGG | - | chr4.3:26629098-26629117 | MS.gene053495:CDS | 60.0% | |
! | GGCAAGTGTCGTAGCTGCCA+AGG | - | chr4.3:26629659-26629678 | MS.gene053495:intron | 60.0% |
!! | CGTTGGGCTGGTTGTCATGG+CGG | - | chr4.3:26631478-26631497 | MS.gene053495:intron | 60.0% |
!! | GTGCGTTGGGCTGGTTGTCA+TGG | - | chr4.3:26631475-26631494 | MS.gene053495:intron | 60.0% |
ACCACCTCGGCCGTCGTAGA+AGG | - | chr4.3:26629179-26629198 | MS.gene053495:intron | 65.0% | |
ACCTCGGCCGTCGTAGAAGG+TGG | - | chr4.3:26629182-26629201 | MS.gene053495:intron | 65.0% | |
ACCTTCTACGACGGCCGAGG+TGG | + | chr4.3:26629183-26629202 | None:intergenic | 65.0% | |
AGCGGCGCCACCTTCTACGA+CGG | + | chr4.3:26629192-26629211 | None:intergenic | 65.0% | |
AGGGATAGAGGTGGGCCGTG+GGG | + | chr4.3:26629132-26629151 | None:intergenic | 65.0% | |
CGGCGGGAACGAGTGGATGA+AGG | - | chr4.3:26629223-26629242 | MS.gene053495:intron | 65.0% | |
CTGCCGGAGACCTTTCCCCA+CGG | - | chr4.3:26629114-26629133 | MS.gene053495:CDS | 65.0% | |
GAGGGATAGAGGTGGGCCGT+GGG | + | chr4.3:26629133-26629152 | None:intergenic | 65.0% | |
TAGAGGTGGGCCGTGGGGAA+AGG | + | chr4.3:26629127-26629146 | None:intergenic | 65.0% | |
TCTACGACGGCCGAGGTGGT+GGG | + | chr4.3:26629179-26629198 | None:intergenic | 65.0% | |
TTCTACGACGGCCGAGGTGG+TGG | + | chr4.3:26629180-26629199 | None:intergenic | 65.0% | |
! | CTCCGGCAGAAGCACGGTAG+CGG | + | chr4.3:26629103-26629122 | None:intergenic | 65.0% |
CGAGGGATAGAGGTGGGCCG+TGG | + | chr4.3:26629134-26629153 | None:intergenic | 70.0% | |
CTACGACGGCCGAGGTGGTG+GGG | + | chr4.3:26629178-26629197 | None:intergenic | 70.0% | |
GCCACCTTCTACGACGGCCG+AGG | + | chr4.3:26629186-26629205 | None:intergenic | 70.0% | |
GCTCTCCCTCCCCACCACCT+CGG | - | chr4.3:26629166-26629185 | MS.gene053495:intron | 70.0% | |
GGGCCGTGGGGAAAGGTCTC+CGG | + | chr4.3:26629120-26629139 | None:intergenic | 70.0% | |
TGGTGGGGAGGGAGAGCGAC+TGG | + | chr4.3:26629163-26629182 | None:intergenic | 70.0% | |
!! | GACGGCCGAGGTGGTGGGGA+GGG | + | chr4.3:26629174-26629193 | None:intergenic | 75.0% |
! | CCCGCCGGCGCGTCTAGCAG+CGG | + | chr4.3:26629210-26629229 | None:intergenic | 80.0% |
! | GCCGCTGCTAGACGCGCCGG+CGG | - | chr4.3:26629206-26629225 | MS.gene053495:intron | 80.0% |
! | GGCGCCGCTGCTAGACGCGC+CGG | - | chr4.3:26629203-26629222 | MS.gene053495:intron | 80.0% |
!! | CCGCTGCTAGACGCGCCGGC+GGG | - | chr4.3:26629207-26629226 | MS.gene053495:intron | 80.0% |
!! | GACGCGCCGGCGGGAACGAG+TGG | - | chr4.3:26629216-26629235 | MS.gene053495:intron | 80.0% |
!!! | CGACGGCCGAGGTGGTGGGG+AGG | + | chr4.3:26629175-26629194 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 26629065 | 26632401 | 26629065 | ID=MS.gene053495 |
chr4.3 | mRNA | 26629065 | 26632401 | 26629065 | ID=MS.gene053495.t1;Parent=MS.gene053495 |
chr4.3 | exon | 26632069 | 26632401 | 26632069 | ID=MS.gene053495.t1.exon1;Parent=MS.gene053495.t1 |
chr4.3 | CDS | 26632069 | 26632401 | 26632069 | ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1 |
chr4.3 | exon | 26631711 | 26631837 | 26631711 | ID=MS.gene053495.t1.exon2;Parent=MS.gene053495.t1 |
chr4.3 | CDS | 26631711 | 26631837 | 26631711 | ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1 |
chr4.3 | exon | 26629398 | 26629515 | 26629398 | ID=MS.gene053495.t1.exon3;Parent=MS.gene053495.t1 |
chr4.3 | CDS | 26629398 | 26629515 | 26629398 | ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1 |
chr4.3 | exon | 26629266 | 26629286 | 26629266 | ID=MS.gene053495.t1.exon4;Parent=MS.gene053495.t1 |
chr4.3 | CDS | 26629266 | 26629286 | 26629266 | ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1 |
chr4.3 | exon | 26629065 | 26629179 | 26629065 | ID=MS.gene053495.t1.exon5;Parent=MS.gene053495.t1 |
chr4.3 | CDS | 26629065 | 26629179 | 26629065 | ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1 |
Gene Sequence |
Protein sequence |