AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053495


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053495.t1 MTR_4g086255 72.043 186 30 5 1 177 1 173 9.84e-85 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053495.t1 AT3G19220 55.333 150 62 2 10 154 16 165 4.83e-49 159

Find 86 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGGAAAGATATTGATTTAA+TGG 0.291501 4.3:-26629094 MS.gene053495:CDS
AGTTGTCAACTTGGAATAAC+TGG 0.313953 4.3:-26629159 MS.gene053495:CDS
TTCCAAATGCATTCCTTGTA+TGG 0.320701 4.3:-26631717 MS.gene053495:CDS
GTCTAGGATACCTCAAGTTT+GGG 0.326383 4.3:+26632058 None:intergenic
TGCATTCCTTGTATGGGAAT+TGG 0.330677 4.3:-26631710 MS.gene053495:intron
AGTCTAGGATACCTCAAGTT+TGG 0.345238 4.3:+26632057 None:intergenic
GGTACTCCGCATAGATTCTT+AGG 0.361012 4.3:-26629494 MS.gene053495:CDS
TCCCATACAAGGAATGCATT+TGG 0.371388 4.3:+26631715 None:intergenic
AGGCGTTCATCAACGACTTC+AGG 0.372761 4.3:+26632091 None:intergenic
TTCTACGACGGCCGAGGTGG+TGG 0.373631 4.3:+26632267 None:intergenic
ACGAAATAGAGAAGGATATA+TGG 0.381212 4.3:-26632173 MS.gene053495:CDS
GGAGAAACAGGAGAAGAATC+AGG 0.384713 4.3:+26632112 None:intergenic
GGGCCGTGGGGAAAGGTCTC+CGG 0.391665 4.3:+26632327 None:intergenic
CCGCTGCTAGACGCGCCGGC+GGG 0.397750 4.3:-26632237 MS.gene053495:CDS
CGAGGGATAGAGGTGGGCCG+TGG 0.399101 4.3:+26632313 None:intergenic
GTTATAGTAGCTTACATATC+CGG 0.401921 4.3:+26631760 None:intergenic
GAAGGATATATGGTTGATAA+TGG 0.408638 4.3:-26632163 MS.gene053495:CDS
ACCACCTCGGCCGTCGTAGA+AGG 0.411149 4.3:-26632265 MS.gene053495:CDS
TGAAAGCTAAGGAGAGAAAA+TGG 0.412578 4.3:-26632198 MS.gene053495:CDS
TATTGATTTAATGGAGGACT+TGG 0.415117 4.3:-26629085 MS.gene053495:CDS
TGGTGGGGAGGGAGAGCGAC+TGG 0.425439 4.3:+26632284 None:intergenic
TTAATGGAGGACTTGGGTAA+TGG 0.431654 4.3:-26629078 MS.gene053495:CDS
TCAACGACTTCAGGAGAAAC+AGG 0.446064 4.3:+26632100 None:intergenic
CAACTTGGAATAACTGGTCT+TGG 0.457372 4.3:-26629153 MS.gene053495:CDS
CCCGCCGGCGCGTCTAGCAG+CGG 0.458625 4.3:+26632237 None:intergenic
CTGGAAGAGACGAGGGATAG+AGG 0.462107 4.3:+26632303 None:intergenic
TAGAGGTGGGCCGTGGGGAA+AGG 0.462906 4.3:+26632320 None:intergenic
TTCCGCTACCGTGCTTCTGC+CGG 0.465937 4.3:-26632346 MS.gene053495:CDS
CAAGTTTGGGGTCACATTGA+AGG 0.467284 4.3:+26632071 None:intergenic
GTAAAGAGGTGGTTTATGAA+TGG 0.468333 4.3:-26631811 MS.gene053495:CDS
GCCGCTGCTAGACGCGCCGG+CGG 0.485119 4.3:-26632238 MS.gene053495:CDS
AGCTTACATATCCGGATCCT+TGG 0.485700 4.3:+26631768 None:intergenic
TCTACGACGGCCGAGGTGGT+GGG 0.486217 4.3:+26632268 None:intergenic
TGTCGTAGCTGCCAAGGATC+CGG 0.492139 4.3:-26631779 MS.gene053495:CDS
TCAGGGTAAGTCATGGGAAG+TGG 0.505112 4.3:+26632130 None:intergenic
CTACGACGGCCGAGGTGGTG+GGG 0.506106 4.3:+26632269 None:intergenic
GACGGCCGAGGTGGTGGGGA+GGG 0.506391 4.3:+26632273 None:intergenic
TCCAAATGCATTCCTTGTAT+GGG 0.506555 4.3:-26631716 MS.gene053495:CDS
CGACGGCCGAGGTGGTGGGG+AGG 0.506589 4.3:+26632272 None:intergenic
GTAAGCTACTATAACAAAAG+AGG 0.507758 4.3:-26631752 MS.gene053495:CDS
TAAGTCATGGGAAGTGGAAG+AGG 0.508061 4.3:+26632136 None:intergenic
GGCGCCGCTGCTAGACGCGC+CGG 0.508225 4.3:-26632241 MS.gene053495:CDS
GAGGGATAGAGGTGGGCCGT+GGG 0.518062 4.3:+26632314 None:intergenic
CTCCGGCAGAAGCACGGTAG+CGG 0.523548 4.3:+26632344 None:intergenic
AGCGGCGCCACCTTCTACGA+CGG 0.531670 4.3:+26632255 None:intergenic
GATAAGCCGCATAAATAAGA+TGG 0.534781 4.3:-26629420 MS.gene053495:CDS
GACGCGCCGGCGGGAACGAG+TGG 0.537435 4.3:-26632228 MS.gene053495:CDS
TAAGCTACTATAACAAAAGA+GGG 0.541971 4.3:-26631751 MS.gene053495:CDS
CTATAACAAAAGAGGGAAAG+AGG 0.547070 4.3:-26631744 MS.gene053495:CDS
CGGCGGGAACGAGTGGATGA+AGG 0.547338 4.3:-26632221 MS.gene053495:CDS
GAAGATGAGGGAACTTGCAT+TGG 0.547515 4.3:+26632366 None:intergenic
GAAGAATCAGGGTAAGTCAT+GGG 0.548546 4.3:+26632124 None:intergenic
ATTGATTTAATGGAGGACTT+GGG 0.552134 4.3:-26629084 MS.gene053495:CDS
GTAATGGAAAACCGTTATGA+TGG 0.564931 4.3:-26629062 None:intergenic
AAGCACGGTAGCGGAAGATG+AGG 0.572632 4.3:+26632353 None:intergenic
GCCACCTTCTACGACGGCCG+AGG 0.576103 4.3:+26632261 None:intergenic
CTTCATCCACTCGTTCCCGC+CGG 0.576282 4.3:+26632222 None:intergenic
ACCTTCTACGACGGCCGAGG+TGG 0.577117 4.3:+26632264 None:intergenic
ATTGTAGGATTGTAAAGAGG+TGG 0.578542 4.3:-26631822 MS.gene053495:intron
GTGGATGAAGGTGAAAGCTA+AGG 0.585939 4.3:-26632209 MS.gene053495:CDS
GCATTACCAATTCCCATACA+AGG 0.590823 4.3:+26631704 None:intergenic
ACCTCGGCCGTCGTAGAAGG+TGG 0.591927 4.3:-26632262 MS.gene053495:CDS
AGAAGAATCAGGGTAAGTCA+TGG 0.594348 4.3:+26632123 None:intergenic
TGTACACCATCTTATTTATG+CGG 0.599223 4.3:+26629414 None:intergenic
AAATGGTCACGAAATAGAGA+AGG 0.599995 4.3:-26632181 MS.gene053495:CDS
GAGAAACAGGAGAAGAATCA+GGG 0.602861 4.3:+26632113 None:intergenic
GGCAAGTGTCGTAGCTGCCA+AGG 0.605231 4.3:-26631785 MS.gene053495:CDS
AAAGGTCTCCGGCAGAAGCA+CGG 0.606022 4.3:+26632338 None:intergenic
TTATACCACGTTATCTCTGG+GGG 0.606216 4.3:-26629448 MS.gene053495:CDS
CTGCCGGAGACCTTTCCCCA+CGG 0.611563 4.3:-26632330 MS.gene053495:CDS
TCAATGTGACCCCAAACTTG+AGG 0.614543 4.3:-26632068 MS.gene053495:intron
GAAAGATATTGATTTAATGG+AGG 0.617023 4.3:-26629091 MS.gene053495:CDS
AGGGATAGAGGTGGGCCGTG+GGG 0.627374 4.3:+26632315 None:intergenic
GAGAACATCAACCATCATAA+CGG 0.631195 4.3:+26629051 None:intergenic
AAGAGACGAGGGATAGAGGT+GGG 0.633620 4.3:+26632307 None:intergenic
GAGGTGGTTTATGAATGGAC+TGG 0.635099 4.3:-26631806 MS.gene053495:CDS
GAGAGCGACTGGAAGAGACG+AGG 0.635228 4.3:+26632295 None:intergenic
AGAGCGACTGGAAGAGACGA+GGG 0.639552 4.3:+26632296 None:intergenic
GAAGAGACGAGGGATAGAGG+TGG 0.643962 4.3:+26632306 None:intergenic
TTTATACCACGTTATCTCTG+GGG 0.649305 4.3:-26629449 MS.gene053495:CDS
AGCACGGTAGCGGAAGATGA+GGG 0.649637 4.3:+26632354 None:intergenic
GCTCTCCCTCCCCACCACCT+CGG 0.664061 4.3:-26632278 MS.gene053495:CDS
ATGTGCAGAAGATAACAGCT+CGG 0.677955 4.3:-26629113 MS.gene053495:CDS
TGAATTGTAGGATTGTAAAG+AGG 0.685981 4.3:-26631825 MS.gene053495:intron
TCTAGGATACCTCAAGTTTG+GGG 0.700582 4.3:+26632059 None:intergenic
AAAGCACCTAAGAATCTATG+CGG 0.722914 4.3:+26629488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTTTTATTTTACCT+AGG - chr4.3:26631856-26631875 MS.gene053495:intron 10.0%
!! AGAATCTTATTAATTCAAAT+TGG + chr4.3:26631713-26631732 None:intergenic 15.0%
!! CATTTATGAAAAAAAAGAAA+CGG + chr4.3:26631190-26631209 None:intergenic 15.0%
!! TTATGATTTATGATTTACTT+TGG - chr4.3:26630910-26630929 MS.gene053495:intron 15.0%
!!! TATAATGAATCATAATTTGT+TGG + chr4.3:26629968-26629987 None:intergenic 15.0%
!! AAAAAAATTGAGATGAGTAT+AGG + chr4.3:26630456-26630475 None:intergenic 20.0%
!! ATTATCATGCTAATATTCAT+AGG + chr4.3:26630878-26630897 None:intergenic 20.0%
!! CTTGCATATAAAAAAACTTA+GGG + chr4.3:26630651-26630670 None:intergenic 20.0%
!! TCTTGCATATAAAAAAACTT+AGG + chr4.3:26630652-26630671 None:intergenic 20.0%
!! TTAAAGCTAGATATATTCTA+CGG - chr4.3:26631568-26631587 MS.gene053495:intron 20.0%
!! TTCATAATTTCTAATTAGCA+GGG - chr4.3:26630214-26630233 MS.gene053495:intron 20.0%
!! TTTCATAATTTCTAATTAGC+AGG - chr4.3:26630213-26630232 MS.gene053495:intron 20.0%
!!! ATAAAAGCATGTAATGTAAT+AGG + chr4.3:26629778-26629797 None:intergenic 20.0%
!!! ATATTTTGATGATGAATTGT+AGG - chr4.3:26629607-26629626 MS.gene053495:intron 20.0%
!!! CGTTTCTTTTTTTTCATAAA+TGG - chr4.3:26631188-26631207 MS.gene053495:intron 20.0%
!!! TTACTTTGGCATATATTTTA+TGG - chr4.3:26630924-26630943 MS.gene053495:intron 20.0%
!!! TTGTTTTTATTGACTTGTTT+TGG + chr4.3:26631328-26631347 None:intergenic 20.0%
!!! TTGTTTTTTTAGACAACAAA+AGG + chr4.3:26630323-26630342 None:intergenic 20.0%
! AACATATATATGATCACACT+TGG - chr4.3:26630078-26630097 MS.gene053495:intron 25.0%
! AAGTGAATACAAAGAAACAA+TGG + chr4.3:26632245-26632264 None:intergenic 25.0%
! AATATACACATGAAATTCCT+AGG + chr4.3:26631876-26631895 None:intergenic 25.0%
! ACATAGAATTAAGATCATAG+AGG + chr4.3:26632207-26632226 None:intergenic 25.0%
! ACTCTGATATTTCCATTATA+AGG - chr4.3:26631533-26631552 MS.gene053495:intron 25.0%
! ACTGTATCAAATGTGTTTAA+AGG - chr4.3:26630049-26630068 MS.gene053495:intron 25.0%
! AGGAATTTCATGTGTATATT+AGG - chr4.3:26631876-26631895 MS.gene053495:intron 25.0%
! CTAAAAAAACAATTTCCCTT+TGG - chr4.3:26630331-26630350 MS.gene053495:intron 25.0%
! GATATAAGCTATAAGTTGTT+TGG + chr4.3:26629453-26629472 None:intergenic 25.0%
! TAAAGCTAGATATATTCTAC+GGG - chr4.3:26631569-26631588 MS.gene053495:intron 25.0%
! TAAGCTACTATAACAAAAGA+GGG - chr4.3:26629693-26629712 MS.gene053495:intron 25.0%
! TATAACCTGAAACCTTATAA+TGG + chr4.3:26631548-26631567 None:intergenic 25.0%
! TATTAAAGTAAGCAAGATGT+AGG - chr4.3:26631810-26631829 MS.gene053495:CDS 25.0%
! TATTTCCATTATAAGGTTTC+AGG - chr4.3:26631540-26631559 MS.gene053495:intron 25.0%
! TCTATGTTGAAATGGTTAAA+AGG + chr4.3:26631030-26631049 None:intergenic 25.0%
! TGTCCATTATATTTCAAACA+GGG + chr4.3:26631261-26631280 None:intergenic 25.0%
! TTGTCCATTATATTTCAAAC+AGG + chr4.3:26631262-26631281 None:intergenic 25.0%
!! AGTACTTGTATCTTTTACAA+AGG + chr4.3:26630357-26630376 None:intergenic 25.0%
!!! ATGCAGTTTTGTAATTTGTA+TGG + chr4.3:26630507-26630526 None:intergenic 25.0%
!!! ATGTAATGTAATAGGTTGAT+AGG + chr4.3:26629770-26629789 None:intergenic 25.0%
!!! GAAAGATATTGATTTAATGG+AGG - chr4.3:26632353-26632372 MS.gene053495:CDS 25.0%
!!! TCATTTTTACACAACAACTA+TGG - chr4.3:26630288-26630307 MS.gene053495:intron 25.0%
!!! TCGGAAAGATATTGATTTAA+TGG - chr4.3:26632350-26632369 MS.gene053495:CDS 25.0%
!!! TTCTTTGTATTCACTTTTAC+TGG - chr4.3:26632249-26632268 MS.gene053495:CDS 25.0%
AAAGATCAATGGAATACAAG+TGG + chr4.3:26631620-26631639 None:intergenic 30.0%
ACGAAATAGAGAAGGATATA+TGG - chr4.3:26629271-26629290 MS.gene053495:intron 30.0%
ACGACATAAGTTTATCTGTT+AGG - chr4.3:26631111-26631130 MS.gene053495:intron 30.0%
AGTCAATAAAAACAAGATGC+TGG - chr4.3:26631333-26631352 MS.gene053495:intron 30.0%
ATCATGACATCTAATTCTGT+AGG - chr4.3:26631751-26631770 MS.gene053495:CDS 30.0%
ATGTGTATATTAGGAGTTGT+TGG - chr4.3:26631885-26631904 MS.gene053495:intron 30.0%
CACTATCTTCTATGTTGAAA+TGG + chr4.3:26631038-26631057 None:intergenic 30.0%
CATTTCAACATAGAAGATAG+TGG - chr4.3:26631036-26631055 MS.gene053495:intron 30.0%
GATACTAAAACTTGAGAAGA+CGG - chr4.3:26631065-26631084 MS.gene053495:intron 30.0%
GTAAAAATGAAAACCCTTCA+TGG + chr4.3:26630278-26630297 None:intergenic 30.0%
GTAAGCTACTATAACAAAAG+AGG - chr4.3:26629692-26629711 MS.gene053495:intron 30.0%
GTCAATAAAAACAAGATGCT+GGG - chr4.3:26631334-26631353 MS.gene053495:intron 30.0%
GTCATGATTCATATGACTAT+GGG + chr4.3:26631739-26631758 None:intergenic 30.0%
GTCCATTATATTTCAAACAG+GGG + chr4.3:26631260-26631279 None:intergenic 30.0%
GTTATAGTAGCTTACATATC+CGG + chr4.3:26629687-26629706 None:intergenic 30.0%
TACTTAATAGTGAGCTATAG+TGG + chr4.3:26631514-26631533 None:intergenic 30.0%
TCAATAAAAACAAGATGCTG+GGG - chr4.3:26631335-26631354 MS.gene053495:intron 30.0%
TGAATTGTAGGATTGTAAAG+AGG - chr4.3:26629619-26629638 MS.gene053495:intron 30.0%
TGTCATGATTCATATGACTA+TGG + chr4.3:26631740-26631759 None:intergenic 30.0%
! AAAAGTATACCAGCACAAAA+AGG + chr4.3:26629809-26629828 None:intergenic 30.0%
! AAAATGTTTCAGACTAGCTA+CGG - chr4.3:26631443-26631462 MS.gene053495:intron 30.0%
! AACCCCTGTTTGAAATATAA+TGG - chr4.3:26631255-26631274 MS.gene053495:intron 30.0%
! AAGTAAGAATTCTGTTGCTT+TGG - chr4.3:26632067-26632086 MS.gene053495:intron 30.0%
! AATTTTCTGTTGCGTGATTT+TGG - chr4.3:26631681-26631700 MS.gene053495:intron 30.0%
! AGGTACCTTTTCAATAGAAA+AGG + chr4.3:26632187-26632206 None:intergenic 30.0%
! ATGCAGTTTTGCAATTTGTA+GGG - chr4.3:26630557-26630576 MS.gene053495:intron 30.0%
! ATGGACTGAAAACTGAATAT+AGG + chr4.3:26630488-26630507 None:intergenic 30.0%
! ATTGATTTAATGGAGGACTT+GGG - chr4.3:26632360-26632379 MS.gene053495:CDS 30.0%
! ATTTTATACCACGTTATCTC+TGG - chr4.3:26631993-26632012 MS.gene053495:intron 30.0%
! CATGCTTTTAGTCATTCTTT+AGG - chr4.3:26630524-26630543 MS.gene053495:intron 30.0%
! GTAAAAGCACAATGAAACAA+TGG + chr4.3:26631790-26631809 None:intergenic 30.0%
! TATCTTTTACAAAGGCCAAA+GGG + chr4.3:26630349-26630368 None:intergenic 30.0%
! TGTACACCATCTTATTTATG+CGG + chr4.3:26632033-26632052 None:intergenic 30.0%
! TTTTATACCACGTTATCTCT+GGG - chr4.3:26631994-26632013 MS.gene053495:intron 30.0%
! TTTTTCTCGACTTCTCTATA+TGG - chr4.3:26631637-26631656 MS.gene053495:intron 30.0%
!! AGTAAGAATTCTGTTGCTTT+GGG - chr4.3:26632068-26632087 MS.gene053495:intron 30.0%
!! GAAGGATATATGGTTGATAA+TGG - chr4.3:26629281-26629300 MS.gene053495:intron 30.0%
!! GAATCATAATTTGTTGGTAG+CGG + chr4.3:26629962-26629981 None:intergenic 30.0%
!! TATTGATTTAATGGAGGACT+TGG - chr4.3:26632359-26632378 MS.gene053495:CDS 30.0%
!! TTTTTAGTCAAGTAGCTTAG+TGG - chr4.3:26629855-26629874 MS.gene053495:intron 30.0%
!!! TGCTCTCAAATTATTTTGAC+TGG - chr4.3:26630242-26630261 MS.gene053495:intron 30.0%
!!! TGTTTTTGAAGTTGTCAACT+TGG - chr4.3:26632276-26632295 MS.gene053495:CDS 30.0%
AAATGGTCACGAAATAGAGA+AGG - chr4.3:26629263-26629282 MS.gene053495:intron 35.0%
AATTTGTAGGGACTAAAAGG+GGG - chr4.3:26630569-26630588 MS.gene053495:intron 35.0%
ACAAGACAAGCATACAATTC+AGG + chr4.3:26632130-26632149 None:intergenic 35.0%
AGTTGTCAACTTGGAATAAC+TGG - chr4.3:26632285-26632304 MS.gene053495:CDS 35.0%
ATTGTAGGATTGTAAAGAGG+TGG - chr4.3:26629622-26629641 MS.gene053495:intron 35.0%
CAAAATTATACCTTCTAGCG+AGG - chr4.3:26631151-26631170 MS.gene053495:intron 35.0%
CAAGTGGAAACATTCTACAT+CGG + chr4.3:26631604-26631623 None:intergenic 35.0%
CAATTTGTAGGGACTAAAAG+GGG - chr4.3:26630568-26630587 MS.gene053495:intron 35.0%
CTATAACAAAAGAGGGAAAG+AGG - chr4.3:26629700-26629719 MS.gene053495:intron 35.0%
GAAGTCGAGAAAAAGATCAA+TGG + chr4.3:26631631-26631650 None:intergenic 35.0%
GATAAGCCGCATAAATAAGA+TGG - chr4.3:26632024-26632043 MS.gene053495:intron 35.0%
GCAATTTGTAGGGACTAAAA+GGG - chr4.3:26630567-26630586 MS.gene053495:intron 35.0%
GTAAAGAGGTGGTTTATGAA+TGG - chr4.3:26629633-26629652 MS.gene053495:intron 35.0%
TATTAATTCCAGTGCCTCTT+TGG + chr4.3:26631413-26631432 None:intergenic 35.0%
TCCAAATGCATTCCTTGTAT+GGG - chr4.3:26629728-26629747 MS.gene053495:intron 35.0%
TCTGCACATATCCTGAAAAA+CGG + chr4.3:26632320-26632339 None:intergenic 35.0%
TGAAAGCTAAGGAGAGAAAA+TGG - chr4.3:26629246-26629265 MS.gene053495:intron 35.0%
TGCAATTTGTAGGGACTAAA+AGG - chr4.3:26630566-26630585 MS.gene053495:intron 35.0%
TTCCAAATGCATTCCTTGTA+TGG - chr4.3:26629727-26629746 MS.gene053495:intron 35.0%
TTTATACCACGTTATCTCTG+GGG - chr4.3:26631995-26632014 MS.gene053495:intron 35.0%
! AAAGCACCTAAGAATCTATG+CGG + chr4.3:26631959-26631978 None:intergenic 35.0%
! AAATGTTTCAGACTAGCTAC+GGG - chr4.3:26631444-26631463 MS.gene053495:intron 35.0%
! ATATGCAAAGTGTCTTGCTT+TGG - chr4.3:26632154-26632173 MS.gene053495:CDS 35.0%
! ATTGCAAAACTGCATGCTTT+TGG + chr4.3:26630552-26630571 None:intergenic 35.0%
! CATGCAGTTTTGCAATTTGT+AGG - chr4.3:26630556-26630575 MS.gene053495:intron 35.0%
! GTACGCCTTTTCTATTGAAA+AGG - chr4.3:26632179-26632198 MS.gene053495:CDS 35.0%
! GTATCTTTTACAAAGGCCAA+AGG + chr4.3:26630350-26630369 None:intergenic 35.0%
! TCAGACATGTCTGTATTTTG+TGG + chr4.3:26630111-26630130 None:intergenic 35.0%
! TTATCCCAGTACGGAATTTT+TGG + chr4.3:26631233-26631252 None:intergenic 35.0%
!! ACAATTTTGATGCAGGACTT+GGG + chr4.3:26630822-26630841 None:intergenic 35.0%
!! AGTACTGATGTACATACACT+AGG - chr4.3:26630371-26630390 MS.gene053495:intron 35.0%
!! ATAATTTGTTGGTAGCGGTA+AGG + chr4.3:26629957-26629976 None:intergenic 35.0%
!! CAACCAAGTTTTATCTCACT+AGG + chr4.3:26630773-26630792 None:intergenic 35.0%
!! CAAGTTTTATCTCACTAGGT+GGG + chr4.3:26630769-26630788 None:intergenic 35.0%
!! CATCTAGACAATTTTGATGC+AGG + chr4.3:26630829-26630848 None:intergenic 35.0%
!! GTAAGAATTCTGTTGCTTTG+GGG - chr4.3:26632069-26632088 MS.gene053495:CDS 35.0%
!!! GTATGCAGCATCTTATTTTG+AGG - chr4.3:26630716-26630735 MS.gene053495:intron 35.0%
!!! TCGTTTTTTCCTTTTTGTGC+TGG - chr4.3:26629797-26629816 MS.gene053495:intron 35.0%
AAACTCACACACCTTAAGTG+TGG - chr4.3:26629880-26629899 MS.gene053495:intron 40.0%
ACACCTTAAGTGTGGATGAA+TGG - chr4.3:26629888-26629907 MS.gene053495:intron 40.0%
AGAAGAATCAGGGTAAGTCA+TGG + chr4.3:26629324-26629343 None:intergenic 40.0%
AGCTCCAAAAATTCCGTACT+GGG - chr4.3:26631226-26631245 MS.gene053495:intron 40.0%
AGGAGTCTATCTCAAATCAG+TGG - chr4.3:26632098-26632117 MS.gene053495:CDS 40.0%
AGTCAAACCAAAGAGAGTCT+AGG + chr4.3:26629405-26629424 None:intergenic 40.0%
ATATATGTAGCGAAGCCTGA+GGG - chr4.3:26629985-26630004 MS.gene053495:intron 40.0%
ATCCTACCACACTTTCATTG+TGG - chr4.3:26631925-26631944 MS.gene053495:intron 40.0%
ATGTGCAGAAGATAACAGCT+CGG - chr4.3:26632331-26632350 MS.gene053495:CDS 40.0%
CATTATCTCAGCCACAACTA+CGG + chr4.3:26631375-26631394 None:intergenic 40.0%
CCACCTAGTGAGATAAAACT+TGG - chr4.3:26630767-26630786 MS.gene053495:intron 40.0%
GAAGAATCAGGGTAAGTCAT+GGG + chr4.3:26629323-26629342 None:intergenic 40.0%
GAGAAACAGGAGAAGAATCA+GGG + chr4.3:26629334-26629353 None:intergenic 40.0%
GCATTACCAATTCCCATACA+AGG + chr4.3:26629743-26629762 None:intergenic 40.0%
GGAGTCTATCTCAAATCAGT+GGG - chr4.3:26632099-26632118 MS.gene053495:CDS 40.0%
TACCACACTTTCATTGTGGT+AGG - chr4.3:26631929-26631948 MS.gene053495:intron 40.0%
TACCTACCACAATGAAAGTG+TGG + chr4.3:26631934-26631953 None:intergenic 40.0%
TATATATGTAGCGAAGCCTG+AGG - chr4.3:26629984-26630003 MS.gene053495:intron 40.0%
TCCCATACAAGGAATGCATT+TGG + chr4.3:26629732-26629751 None:intergenic 40.0%
TCTCCATTCATCCACACTTA+AGG + chr4.3:26629894-26629913 None:intergenic 40.0%
TGCATTCCTTGTATGGGAAT+TGG - chr4.3:26629734-26629753 MS.gene053495:intron 40.0%
TGGCTAACATAGTCCATGAA+GGG - chr4.3:26630262-26630281 MS.gene053495:intron 40.0%
TGTGGATGAATGGAGAATCT+CGG - chr4.3:26629898-26629917 MS.gene053495:intron 40.0%
TTAATGGAGGACTTGGGTAA+TGG - chr4.3:26632366-26632385 MS.gene053495:CDS 40.0%
TTATACCACGTTATCTCTGG+GGG - chr4.3:26631996-26632015 MS.gene053495:intron 40.0%
TTTATCTCACTAGGTGGGTA+GGG + chr4.3:26630764-26630783 None:intergenic 40.0%
! AGTCTAGGATACCTCAAGTT+TGG + chr4.3:26629390-26629409 None:intergenic 40.0%
! CAACTTGGAATAACTGGTCT+TGG - chr4.3:26632291-26632310 MS.gene053495:CDS 40.0%
! GTCTAGGATACCTCAAGTTT+GGG + chr4.3:26629389-26629408 None:intergenic 40.0%
! TACCACAATGAAAGTGTGGT+AGG + chr4.3:26631930-26631949 None:intergenic 40.0%
! TCTAGGATACCTCAAGTTTG+GGG + chr4.3:26629388-26629407 None:intergenic 40.0%
! TTTTATCTCACTAGGTGGGT+AGG + chr4.3:26630765-26630784 None:intergenic 40.0%
!! CCAAGTTTTATCTCACTAGG+TGG + chr4.3:26630770-26630789 None:intergenic 40.0%
!! GACAATTTTGATGCAGGACT+TGG + chr4.3:26630823-26630842 None:intergenic 40.0%
AAAACAAGATGCTGGGGCTA+AGG - chr4.3:26631341-26631360 MS.gene053495:intron 45.0%
AAGTTTCTCTCCTCGCTAGA+AGG + chr4.3:26631164-26631183 None:intergenic 45.0%
AGAATCTCGGGTTCGAACTT+AGG - chr4.3:26629911-26629930 MS.gene053495:intron 45.0%
AGCTTACATATCCGGATCCT+TGG + chr4.3:26629679-26629698 None:intergenic 45.0%
CAGCTCCAAAAATTCCGTAC+TGG - chr4.3:26631225-26631244 MS.gene053495:intron 45.0%
CTGGCTAACATAGTCCATGA+AGG - chr4.3:26630261-26630280 MS.gene053495:intron 45.0%
GAAGATGAGGGAACTTGCAT+TGG + chr4.3:26629081-26629100 None:intergenic 45.0%
GAATCTCGGGTTCGAACTTA+GGG - chr4.3:26629912-26629931 MS.gene053495:intron 45.0%
GAGGTGGTTTATGAATGGAC+TGG - chr4.3:26629638-26629657 MS.gene053495:intron 45.0%
GGAGAAACAGGAGAAGAATC+AGG + chr4.3:26629335-26629354 None:intergenic 45.0%
GGTACTCCGCATAGATTCTT+AGG - chr4.3:26631950-26631969 MS.gene053495:intron 45.0%
GTGGATGAAGGTGAAAGCTA+AGG - chr4.3:26629235-26629254 MS.gene053495:intron 45.0%
GTGGATGAATGGAGAATCTC+GGG - chr4.3:26629899-26629918 MS.gene053495:intron 45.0%
TAAGTCATGGGAAGTGGAAG+AGG + chr4.3:26629311-26629330 None:intergenic 45.0%
TCAACGACTTCAGGAGAAAC+AGG + chr4.3:26629347-26629366 None:intergenic 45.0%
TCAATGTGACCCCAAACTTG+AGG - chr4.3:26629376-26629395 MS.gene053495:intron 45.0%
! AGGTTTAAGTGCCGTAGTTG+TGG - chr4.3:26631361-26631380 MS.gene053495:intron 45.0%
! CAAGTTTGGGGTCACATTGA+AGG + chr4.3:26629376-26629395 None:intergenic 45.0%
! GAGGTATCCTAGACTCTCTT+TGG - chr4.3:26629395-26629414 MS.gene053495:intron 45.0%
!! AGGGGTTAGTTATCCCAGTA+CGG + chr4.3:26631242-26631261 None:intergenic 45.0%
!!! CAGTACGGAATTTTTGGAGC+TGG + chr4.3:26631227-26631246 None:intergenic 45.0%
!!! AAAAAAAATGTAAATTTTAT+AGG - chr4.3:26630603-26630622 MS.gene053495:intron 5.0%
!!! AAAAAAATGTAAATTTTATA+GGG - chr4.3:26630604-26630623 MS.gene053495:intron 5.0%
!!! ATAAAATTTACATTTTTTTT+TGG + chr4.3:26630603-26630622 None:intergenic 5.0%
!!! TAAAAAAAAAAACAATTTTT+TGG - chr4.3:26630412-26630431 MS.gene053495:intron 5.0%
AAGAGACGAGGGATAGAGGT+GGG + chr4.3:26629140-26629159 None:intergenic 50.0%
ACTATCCCCCAGAGATAACG+TGG + chr4.3:26632004-26632023 None:intergenic 50.0%
AGGCGTTCATCAACGACTTC+AGG + chr4.3:26629356-26629375 None:intergenic 50.0%
TCAGGGTAAGTCATGGGAAG+TGG + chr4.3:26629317-26629336 None:intergenic 50.0%
TTGTGGCTGAGATAATGCCC+TGG - chr4.3:26631378-26631397 MS.gene053495:intron 50.0%
!!! GGTCTTGGTGTCCGTTTTTC+AGG - chr4.3:26632306-26632325 MS.gene053495:CDS 50.0%
AAAGGTCTCCGGCAGAAGCA+CGG + chr4.3:26629109-26629128 None:intergenic 55.0%
AGAGCGACTGGAAGAGACGA+GGG + chr4.3:26629151-26629170 None:intergenic 55.0%
CGGTAAGGACGCTGACATGT+TGG + chr4.3:26629942-26629961 None:intergenic 55.0%
CTCTTTGGTGAAGCCTGCCA+GGG + chr4.3:26631398-26631417 None:intergenic 55.0%
CTGGAAGAGACGAGGGATAG+AGG + chr4.3:26629144-26629163 None:intergenic 55.0%
GAAGAGACGAGGGATAGAGG+TGG + chr4.3:26629141-26629160 None:intergenic 55.0%
TCTCACTAGGTGGGTAGGGT+TGG + chr4.3:26630760-26630779 None:intergenic 55.0%
TGAGCGCTCTCAAATCCCTC+AGG + chr4.3:26630003-26630022 None:intergenic 55.0%
TGTCGTAGCTGCCAAGGATC+CGG - chr4.3:26629665-26629684 MS.gene053495:intron 55.0%
! ACGGGCTATATGCGTGCGTT+GGG - chr4.3:26631462-26631481 MS.gene053495:intron 55.0%
! AGGCTTCACCAAAGAGGCAC+TGG - chr4.3:26631402-26631421 MS.gene053495:intron 55.0%
! AGGGACTAAAAGGGGGCACA+AGG - chr4.3:26630576-26630595 MS.gene053495:intron 55.0%
! TACGGGCTATATGCGTGCGT+TGG - chr4.3:26631461-26631480 MS.gene053495:intron 55.0%
!! AAGCACGGTAGCGGAAGATG+AGG + chr4.3:26629094-26629113 None:intergenic 55.0%
!! AGCACGGTAGCGGAAGATGA+GGG + chr4.3:26629093-26629112 None:intergenic 55.0%
!! CTGTTGCTTTGGGGTCACGT+AGG - chr4.3:26632078-26632097 MS.gene053495:CDS 55.0%
CCTCTTTGGTGAAGCCTGCC+AGG + chr4.3:26631399-26631418 None:intergenic 60.0%
CCTGGCAGGCTTCACCAAAG+AGG - chr4.3:26631396-26631415 MS.gene053495:intron 60.0%
CTTCATCCACTCGTTCCCGC+CGG + chr4.3:26629225-26629244 None:intergenic 60.0%
GAGAGCGACTGGAAGAGACG+AGG + chr4.3:26629152-26629171 None:intergenic 60.0%
GCTATATGCGTGCGTTGGGC+TGG - chr4.3:26631466-26631485 MS.gene053495:intron 60.0%
GGCTGAGATAATGCCCTGGC+AGG - chr4.3:26631382-26631401 MS.gene053495:intron 60.0%
TTCCGCTACCGTGCTTCTGC+CGG - chr4.3:26629098-26629117 MS.gene053495:CDS 60.0%
! GGCAAGTGTCGTAGCTGCCA+AGG - chr4.3:26629659-26629678 MS.gene053495:intron 60.0%
!! CGTTGGGCTGGTTGTCATGG+CGG - chr4.3:26631478-26631497 MS.gene053495:intron 60.0%
!! GTGCGTTGGGCTGGTTGTCA+TGG - chr4.3:26631475-26631494 MS.gene053495:intron 60.0%
ACCACCTCGGCCGTCGTAGA+AGG - chr4.3:26629179-26629198 MS.gene053495:intron 65.0%
ACCTCGGCCGTCGTAGAAGG+TGG - chr4.3:26629182-26629201 MS.gene053495:intron 65.0%
ACCTTCTACGACGGCCGAGG+TGG + chr4.3:26629183-26629202 None:intergenic 65.0%
AGCGGCGCCACCTTCTACGA+CGG + chr4.3:26629192-26629211 None:intergenic 65.0%
AGGGATAGAGGTGGGCCGTG+GGG + chr4.3:26629132-26629151 None:intergenic 65.0%
CGGCGGGAACGAGTGGATGA+AGG - chr4.3:26629223-26629242 MS.gene053495:intron 65.0%
CTGCCGGAGACCTTTCCCCA+CGG - chr4.3:26629114-26629133 MS.gene053495:CDS 65.0%
GAGGGATAGAGGTGGGCCGT+GGG + chr4.3:26629133-26629152 None:intergenic 65.0%
TAGAGGTGGGCCGTGGGGAA+AGG + chr4.3:26629127-26629146 None:intergenic 65.0%
TCTACGACGGCCGAGGTGGT+GGG + chr4.3:26629179-26629198 None:intergenic 65.0%
TTCTACGACGGCCGAGGTGG+TGG + chr4.3:26629180-26629199 None:intergenic 65.0%
! CTCCGGCAGAAGCACGGTAG+CGG + chr4.3:26629103-26629122 None:intergenic 65.0%
CGAGGGATAGAGGTGGGCCG+TGG + chr4.3:26629134-26629153 None:intergenic 70.0%
CTACGACGGCCGAGGTGGTG+GGG + chr4.3:26629178-26629197 None:intergenic 70.0%
GCCACCTTCTACGACGGCCG+AGG + chr4.3:26629186-26629205 None:intergenic 70.0%
GCTCTCCCTCCCCACCACCT+CGG - chr4.3:26629166-26629185 MS.gene053495:intron 70.0%
GGGCCGTGGGGAAAGGTCTC+CGG + chr4.3:26629120-26629139 None:intergenic 70.0%
TGGTGGGGAGGGAGAGCGAC+TGG + chr4.3:26629163-26629182 None:intergenic 70.0%
!! GACGGCCGAGGTGGTGGGGA+GGG + chr4.3:26629174-26629193 None:intergenic 75.0%
! CCCGCCGGCGCGTCTAGCAG+CGG + chr4.3:26629210-26629229 None:intergenic 80.0%
! GCCGCTGCTAGACGCGCCGG+CGG - chr4.3:26629206-26629225 MS.gene053495:intron 80.0%
! GGCGCCGCTGCTAGACGCGC+CGG - chr4.3:26629203-26629222 MS.gene053495:intron 80.0%
!! CCGCTGCTAGACGCGCCGGC+GGG - chr4.3:26629207-26629226 MS.gene053495:intron 80.0%
!! GACGCGCCGGCGGGAACGAG+TGG - chr4.3:26629216-26629235 MS.gene053495:intron 80.0%
!!! CGACGGCCGAGGTGGTGGGG+AGG + chr4.3:26629175-26629194 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 26629065 26632401 26629065 ID=MS.gene053495
chr4.3 mRNA 26629065 26632401 26629065 ID=MS.gene053495.t1;Parent=MS.gene053495
chr4.3 exon 26632069 26632401 26632069 ID=MS.gene053495.t1.exon1;Parent=MS.gene053495.t1
chr4.3 CDS 26632069 26632401 26632069 ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1
chr4.3 exon 26631711 26631837 26631711 ID=MS.gene053495.t1.exon2;Parent=MS.gene053495.t1
chr4.3 CDS 26631711 26631837 26631711 ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1
chr4.3 exon 26629398 26629515 26629398 ID=MS.gene053495.t1.exon3;Parent=MS.gene053495.t1
chr4.3 CDS 26629398 26629515 26629398 ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1
chr4.3 exon 26629266 26629286 26629266 ID=MS.gene053495.t1.exon4;Parent=MS.gene053495.t1
chr4.3 CDS 26629266 26629286 26629266 ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1
chr4.3 exon 26629065 26629179 26629065 ID=MS.gene053495.t1.exon5;Parent=MS.gene053495.t1
chr4.3 CDS 26629065 26629179 26629065 ID=cds.MS.gene053495.t1;Parent=MS.gene053495.t1
Gene Sequence

>MS.gene053495

ATGTTATCTACTACCAATGCAAGTTCCCTCATCTTCCGCTACCGTGCTTCTGCCGGAGACCTTTCCCCACGGCCCACCTCTATCCCTCGTCTCTTCCAGTCGCTCTCCCTCCCCACCACCTCGGCCGTCGTAGAAGGTGGCGCCGCTGCTAGACGCGCCGGCGGGAACGAGTGGATGAAGGTGAAAGCTAAGGAGAGAAAATGGTCACGAAATAGAGAAGGATATATGGTTGATAATGGTGAGCCTCTTCCACTTCCCATGACTTACCCTGATTCTTCTCCTGTTTCTCCTGAAGTCGTTGATGAACGCCTTCAATGTGACCCCAAACTTGAGGTATCCTAGACTCTCTTTGGTTTGACTTATTTTAGCTTATATATTTGCACAACCAAACAACTTATAGCTTATATCAACACAATTTTATCTTTTGTTATAGAAATACTAGTAGCTTAGTTATGTCTGATAAGCACTTATACATAAGCACTTTTGTGATAAACAATTATGTTATAATCTCTTAATTAAATTGTTTATGCATAATTGAGTAGATATTTTGATGATGAATTGTAGGATTGTAAAGAGGTGGTTTATGAATGGACTGGCAAGTGTCGTAGCTGCCAAGGATCCGGATATGTAAGCTACTATAACAAAAGAGGGAAAGAGGTCACTTCCAAATGCATTCCTTGTATGGGAATTGGTAATGCATTTCCTATCAACCTATTACATTACATGCTTTTATCGTTTTTTCCTTTTTGTGCTGGTATACTTTTGACTAAAACTTTTGAGCATTATGATTTTTTTAGTCAAGTAGCTTAGTGGCTAAACTCACACACCTTAAGTGTGGATGAATGGAGAATCTCGGGTTCGAACTTAGGGTACACCAACATGTCAGCGTCCTTACCGCTACCAACAAATTATGATTCATTATATATGTAGCGAAGCCTGAGGGATTTGAGAGCGCTCATGACTGTAAAATTCTTCTTTAGATAAACTGTATCAAATGTGTTTAAAGGTTTTGCAACATATATATGATCACACTTGGAAAATATCCACAAAATACAGACATGTCTGAATTATGTTATTTCGAGATTTTTTTTTTCTTTATTCTTTTGTTTGTTAATATATACTGTTATATTTGTTAGCAGCTTTACTGTTTTCATAATTTCTAATTAGCAGGGTTTATTGCTCTCAAATTATTTTGACTGGCTAACATAGTCCATGAAGGGTTTTCATTTTTACACAACAACTATGGTTACGTTCTCCTTTTGTTGTCTAAAAAAACAATTTCCCTTTGGCCTTTGTAAAAGATACAAGTACTGATGTACATACACTAGGAAAAATTTACTTTAAATGTAAAAAAAAAAACAATTTTTTGGTTAAATATGTTTGTAGTTCCTATACTCATCTCAATTTTTTTTTTTTAGTTCCTATATTCAGTTTTCAGTCCATACAAATTACAAAACTGCATGCTTTTAGTCATTCTTTAGGAACCAAAAGCATGCAGTTTTGCAATTTGTAGGGACTAAAAGGGGGCACAAGGACCAAAAAAAAATGTAAATTTTATAGGGACAAACAAGATGCATATTTATCCCTAAGTTTTTTTATATGCAAGATATATATTTAATGAATATTCAATTGTACATTTTTCTATTATAACGTATGCAGCATCTTATTTTGAGGCATATATACTTGTAAAAGCCAACCCTACCCACCTAGTGAGATAAAACTTGGTTGTTGTTGTATGTATCTGCATATAAAGTCCCAAGTCCTGCATCAAAATTGTCTAGATGTAAGTGAATATCTGACATATGAGTATCCTATGAATATTAGCATGATAATTGTAGTTTTGATTTATGATTTATGATTTACTTTGGCATATATTTTATGGTTAAATCATTCAGTATTATACTAAAATTCTTTCTATATGCACTATTAGTTGTTCAGACTTTTCTGTAATATTGTTTCTATCCTTTTAACCATTTCAACATAGAAGATAGTGGCAGCATGATACTAAAACTTGAGAAGACGGTATGAAAATATTATTGACACGACACGACATAAGTTTATCTGTTAGGTATGCATCTGAGACATGCAAAATTATACCTTCTAGCGAGGAGAGAAACTTTCACCGTTTCTTTTTTTTCATAAATGGCAGTGCGAAGCATCCAGCTCCAAAAATTCCGTACTGGGATAACTAACCCCTGTTTGAAATATAATGGACAAACACATGTAATGCATACTCTACACATAAATGTTCAAGAGTTAACCAAAACAAGTCAATAAAAACAAGATGCTGGGGCTAAGGTTTAAGTGCCGTAGTTGTGGCTGAGATAATGCCCTGGCAGGCTTCACCAAAGAGGCACTGGAATTAATAATTCAACAGAAAAATGTTTCAGACTAGCTACGGGCTATATGCGTGCGTTGGGCTGGTTGTCATGGCGGCAATGCTATGCCACTATAGCTCACTATTAAGTACTCTGATATTTCCATTATAAGGTTTCAGGTTATATTAAAGCTAGATATATTCTACGGGTTAGCTATTCCGATGTAGAATGTTTCCACTTGTATTCCATTGATCTTTTTCTCGACTTCTCTATATGGTGAACAACTAGTGATTAATGAAATTTTCTGTTGCGTGATTTTGGAGTTGTCCAATTTGAATTAATAAGATTCTCAACCCATAGTCATATGAATCATGACATCTAATTCTGTAGGACTTTCTAAAATACCATTGTTTCATTGTGCTTTTACTATTAAAGTAAGCAAGATGTAGGATGTTACATATTCTTTGTTTCGAATTAAATTTTTATTTTACCTAGGAATTTCATGTGTATATTAGGAGTTGTTGGCTTGTAGTTCTTGTTTGATCCTACCACACTTTCATTGTGGTAGGTACTCCGCATAGATTCTTAGGTGCTTTATACTATACTAGACATTTTATACCACGTTATCTCTGGGGGATAGTGATAAGCCGCATAAATAAGATGGTGTACACATTAAGTGTTACAAAGTAAGAATTCTGTTGCTTTGGGGTCACGTAGGAGTCTATCTCAAATCAGTGGGTTATTCCTGAATTGTATGCTTGTCTTGTCTTTATATGCAAAGTGTCTTGCTTTGGCAGTACGCCTTTTCTATTGAAAAGGTACCTCTATGATCTTAATTCTATGTTGACTTTCTAAAATACCATTGTTTCTTTGTATTCACTTTTACTGGCTGTTGTTTTTGAAGTTGTCAACTTGGAATAACTGGTCTTGGTGTCCGTTTTTCAGGATATGTGCAGAAGATAACAGCTCGGAAAGATATTGATTTAATGGAGGACTTGGGTAATGGAAAACCGTTATGA

Protein sequence

>MS.gene053495.t1

MLSTTNASSLIFRYRASAGDLSPRPTSIPRLFQSLSLPTTSAVVEGGAAARRAGGNEWMKVKAKERKWSRNREGYMVDNGEPLPLPMTYPDSSPVSPEVVDERLQCDPKLEDCKEVVYEWTGKCRSCQGSGYVSYYNKRGKEVTSKCIPCMGIGTPHRFLGALYYTRHFIPRYLWGIVISRINKMVYTLSVTNTPFLLKSCQLGITGLGVRFSGYVQKITARKDIDLMEDLGNGKPL