Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26513.t1 | KEH30913.1 | 74.1 | 205 | 24 | 4 | 1 | 180 | 1 | 201 | 4.50E-72 | 280.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26513.t1 | Q93YN0 | 55.7 | 149 | 61 | 2 | 10 | 153 | 16 | 164 | 1.9e-39 | 163.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26513.t1 | A0A072UPI5 | 74.1 | 205 | 24 | 4 | 1 | 180 | 1 | 201 | 3.2e-72 | 280.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene26513 | -0.803289 | 3.74E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene26513 | -0.806872 | 6.66E-50 | -1.69E-46 |
| MS.gene050238 | MS.gene26513 | -0.805424 | 1.34E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene26513 | -0.80683 | 6.80E-50 | -1.69E-46 |
| MS.gene053495 | MS.gene26513 | 0.908987 | 9.37E-82 | -1.69E-46 |
| MS.gene054142 | MS.gene26513 | -0.827503 | 1.51E-54 | -1.69E-46 |
| MS.gene054178 | MS.gene26513 | -0.814752 | 1.31E-51 | -1.69E-46 |
| MS.gene05686 | MS.gene26513 | -0.804563 | 2.03E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene26513 | -0.833822 | 4.28E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene26513 | 0.800657 | 1.30E-48 | -1.69E-46 |
| MS.gene060338 | MS.gene26513 | -0.805041 | 1.62E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene26513 | -0.842047 | 3.28E-58 | -1.69E-46 |
| MS.gene061100 | MS.gene26513 | -0.816346 | 5.80E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene26513 | -0.81199 | 5.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26513.t1 | MTR_4g086255 | 74.146 | 205 | 24 | 4 | 1 | 180 | 1 | 201 | 1.39e-98 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26513.t1 | AT3G19220 | 55.705 | 149 | 61 | 2 | 10 | 153 | 16 | 164 | 3.99e-50 | 160 |
Find 79 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTGCTGCTTAGCTATTTA+AGG | 0.115919 | 4.1:-23507232 | MS.gene26513:CDS |
| TTGCAAATGCATTCCTTGTA+TGG | 0.315686 | 4.1:-23507767 | MS.gene26513:CDS |
| TAGATAGGATACCTCAAGTT+TGG | 0.327979 | 4.1:+23508113 | None:intergenic |
| TGCATTCCTTGTATGGGAAT+TGG | 0.330677 | 4.1:-23507760 | MS.gene26513:intron |
| TGCAGCCATATGGGGTGGAG+TGG | 0.354601 | 4.1:-23507276 | MS.gene26513:intron |
| CTTAAATGGTTGCAGCCATA+TGG | 0.360850 | 4.1:-23507286 | MS.gene26513:intron |
| AGATAGGATACCTCAAGTTT+GGG | 0.369199 | 4.1:+23508114 | None:intergenic |
| AGGCGTTCATCAACGACTTC+AGG | 0.372761 | 4.1:+23508147 | None:intergenic |
| TTCTACGACGGCCGAGGTGG+TGG | 0.373631 | 4.1:+23508323 | None:intergenic |
| ACGAAATAGAGAAGGATATA+TGG | 0.381212 | 4.1:-23508229 | MS.gene26513:CDS |
| GGAGAAACAGGAGAAGAATC+AGG | 0.384713 | 4.1:+23508168 | None:intergenic |
| CCGCTGCTAGACGCGCCGGC+GGG | 0.397750 | 4.1:-23508293 | MS.gene26513:CDS |
| GTTATAGTAGCTTACATATC+CGG | 0.401921 | 4.1:+23507810 | None:intergenic |
| GAAGGATATATGGTTGATAA+TGG | 0.408638 | 4.1:-23508219 | MS.gene26513:CDS |
| ACCACCTCGGCCGTCGTAGA+AGG | 0.411149 | 4.1:-23508321 | MS.gene26513:CDS |
| TGAAAGCTAAGGAGAGAAAA+TGG | 0.412578 | 4.1:-23508254 | MS.gene26513:CDS |
| TTAAGGGCTTTGACTTCAAA+TGG | 0.413968 | 4.1:-23507215 | MS.gene26513:CDS |
| GGTGCTGCTTAGCTATTTAA+GGG | 0.421252 | 4.1:-23507231 | MS.gene26513:CDS |
| TGGTGGGGAGGGAGAGCGAC+TGG | 0.425439 | 4.1:+23508340 | None:intergenic |
| GCAGCCATATGGGGTGGAGT+GGG | 0.427801 | 4.1:-23507275 | MS.gene26513:intron |
| TCAACGACTTCAGGAGAAAC+AGG | 0.446064 | 4.1:+23508156 | None:intergenic |
| TTAAATGGTTGCAGCCATAT+GGG | 0.453254 | 4.1:-23507285 | MS.gene26513:intron |
| CCCGCCGGCGCGTCTAGCAG+CGG | 0.458625 | 4.1:+23508293 | None:intergenic |
| CTGGAAGAGACGAGGGATAG+AGG | 0.462107 | 4.1:+23508359 | None:intergenic |
| GGCTTTGACTTCAAATGGTT+AGG | 0.463803 | 4.1:-23507210 | None:intergenic |
| TTCCGCTACCGTGCTTCTGC+CGG | 0.465937 | 4.1:-23508402 | MS.gene26513:CDS |
| CAAGTTTGGGGTCACATTGA+AGG | 0.467284 | 4.1:+23508127 | None:intergenic |
| GTAAAGAGGTGGTTTATGAA+TGG | 0.468333 | 4.1:-23507861 | MS.gene26513:CDS |
| GCCGCTGCTAGACGCGCCGG+CGG | 0.485119 | 4.1:-23508294 | MS.gene26513:CDS |
| AGCTTACATATCCGGATCCT+TGG | 0.485700 | 4.1:+23507818 | None:intergenic |
| TCTACGACGGCCGAGGTGGT+GGG | 0.486217 | 4.1:+23508324 | None:intergenic |
| TGTCGTAGCTGCCAAGGATC+CGG | 0.492139 | 4.1:-23507829 | MS.gene26513:CDS |
| TCAGGGTAAGTCATGGGAAG+TGG | 0.505112 | 4.1:+23508186 | None:intergenic |
| CTACGACGGCCGAGGTGGTG+GGG | 0.506106 | 4.1:+23508325 | None:intergenic |
| GACGGCCGAGGTGGTGGGGA+GGG | 0.506391 | 4.1:+23508329 | None:intergenic |
| CGACGGCCGAGGTGGTGGGG+AGG | 0.506589 | 4.1:+23508328 | None:intergenic |
| GTAAGCTACTATAACAAAAG+AGG | 0.507758 | 4.1:-23507802 | MS.gene26513:CDS |
| TAAGTCATGGGAAGTGGAAG+AGG | 0.508061 | 4.1:+23508192 | None:intergenic |
| GGCGCCGCTGCTAGACGCGC+CGG | 0.508225 | 4.1:-23508297 | MS.gene26513:CDS |
| TAGAGGTGGGCCGTGGTGAA+AGG | 0.513674 | 4.1:+23508376 | None:intergenic |
| TGCAAATGCATTCCTTGTAT+GGG | 0.514891 | 4.1:-23507766 | MS.gene26513:CDS |
| CAGCCATATGGGGTGGAGTG+GGG | 0.520014 | 4.1:-23507274 | MS.gene26513:CDS |
| CTCCGGCAGAAGCACGGTAG+CGG | 0.523548 | 4.1:+23508400 | None:intergenic |
| GGGCCGTGGTGAAAGGTCTC+CGG | 0.525789 | 4.1:+23508383 | None:intergenic |
| AGCGGCGCCACCTTCTACGA+CGG | 0.531670 | 4.1:+23508311 | None:intergenic |
| AGCCATATGGGGTGGAGTGG+GGG | 0.532366 | 4.1:-23507273 | MS.gene26513:CDS |
| GACGCGCCGGCGGGAACGAG+TGG | 0.537435 | 4.1:-23508284 | MS.gene26513:CDS |
| CGAGGGATAGAGGTGGGCCG+TGG | 0.541564 | 4.1:+23508369 | None:intergenic |
| TAAGCTACTATAACAAAAGA+GGG | 0.541971 | 4.1:-23507801 | MS.gene26513:CDS |
| CTATAACAAAAGAGGGAAAG+AGG | 0.547070 | 4.1:-23507794 | MS.gene26513:CDS |
| CGGCGGGAACGAGTGGATGA+AGG | 0.547338 | 4.1:-23508277 | MS.gene26513:CDS |
| GAAGAATCAGGGTAAGTCAT+GGG | 0.548546 | 4.1:+23508180 | None:intergenic |
| AAGCACGGTAGCGGAAGATG+AGG | 0.572632 | 4.1:+23508409 | None:intergenic |
| GCCACCTTCTACGACGGCCG+AGG | 0.576103 | 4.1:+23508317 | None:intergenic |
| CTTCATCCACTCGTTCCCGC+CGG | 0.576282 | 4.1:+23508278 | None:intergenic |
| ACCTTCTACGACGGCCGAGG+TGG | 0.577117 | 4.1:+23508320 | None:intergenic |
| ATTGTAGGATTGTAAAGAGG+TGG | 0.578542 | 4.1:-23507872 | MS.gene26513:intron |
| GTGGATGAAGGTGAAAGCTA+AGG | 0.585939 | 4.1:-23508265 | MS.gene26513:CDS |
| GCATTACCAATTCCCATACA+AGG | 0.590823 | 4.1:+23507754 | None:intergenic |
| ACCTCGGCCGTCGTAGAAGG+TGG | 0.591927 | 4.1:-23508318 | MS.gene26513:CDS |
| AGAAGAATCAGGGTAAGTCA+TGG | 0.594348 | 4.1:+23508179 | None:intergenic |
| AAATGGTCACGAAATAGAGA+AGG | 0.599995 | 4.1:-23508237 | MS.gene26513:CDS |
| GAGAAACAGGAGAAGAATCA+GGG | 0.602861 | 4.1:+23508169 | None:intergenic |
| GGCAAGTGTCGTAGCTGCCA+AGG | 0.605231 | 4.1:-23507835 | MS.gene26513:CDS |
| AAAGGTCTCCGGCAGAAGCA+CGG | 0.606022 | 4.1:+23508394 | None:intergenic |
| TAAATGGTTGCAGCCATATG+GGG | 0.614352 | 4.1:-23507284 | MS.gene26513:intron |
| TCAATGTGACCCCAAACTTG+AGG | 0.614543 | 4.1:-23508124 | MS.gene26513:intron |
| ATGGTTGCAGCCATATGGGG+TGG | 0.627347 | 4.1:-23507281 | MS.gene26513:intron |
| GGAAGGGATTACAGTAAAGT+CGG | 0.627533 | 4.1:-23507252 | MS.gene26513:CDS |
| AAGAGACGAGGGATAGAGGT+GGG | 0.633620 | 4.1:+23508363 | None:intergenic |
| GAGGTGGTTTATGAATGGAC+TGG | 0.635099 | 4.1:-23507856 | MS.gene26513:CDS |
| GAGAGCGACTGGAAGAGACG+AGG | 0.635228 | 4.1:+23508351 | None:intergenic |
| AGAGCGACTGGAAGAGACGA+GGG | 0.639552 | 4.1:+23508352 | None:intergenic |
| GAAGAGACGAGGGATAGAGG+TGG | 0.643962 | 4.1:+23508362 | None:intergenic |
| AGCACGGTAGCGGAAGATGA+GGG | 0.649637 | 4.1:+23508410 | None:intergenic |
| CTGCCGGAGACCTTTCACCA+CGG | 0.650867 | 4.1:-23508386 | MS.gene26513:CDS |
| GCTCTCCCTCCCCACCACCT+CGG | 0.664061 | 4.1:-23508334 | MS.gene26513:CDS |
| TGAATTGTAGGATTGTAAAG+AGG | 0.685981 | 4.1:-23507875 | MS.gene26513:intron |
| GATAGGATACCTCAAGTTTG+GGG | 0.702768 | 4.1:+23508115 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGAATCATAATTTGT+TGG | + | chr4.1:23508120-23508139 | None:intergenic | 15.0% |
| !!! | ATATTTTGATGATGAATTGT+AGG | - | chr4.1:23507759-23507778 | MS.gene26513:intron | 20.0% |
| ! | AACATATATATGATCACACT+TGG | - | chr4.1:23508230-23508249 | MS.gene26513:CDS | 25.0% |
| ! | ACTGTATCAAATGTCTTTAA+AGG | - | chr4.1:23508201-23508220 | MS.gene26513:CDS | 25.0% |
| ! | ATGTAATGTAATACGTTGAT+AGG | + | chr4.1:23507922-23507941 | None:intergenic | 25.0% |
| ! | GATATAAGCTATAAGTTGTT+TGG | + | chr4.1:23507607-23507626 | None:intergenic | 25.0% |
| ! | TAAGCTACTATAACAAAAGA+GGG | - | chr4.1:23507845-23507864 | MS.gene26513:CDS | 25.0% |
| ACGAAATAGAGAAGGATATA+TGG | - | chr4.1:23507417-23507436 | MS.gene26513:intron | 30.0% | |
| GTAAGCTACTATAACAAAAG+AGG | - | chr4.1:23507844-23507863 | MS.gene26513:CDS | 30.0% | |
| GTTATAGTAGCTTACATATC+CGG | + | chr4.1:23507839-23507858 | None:intergenic | 30.0% | |
| TGAATTGTAGGATTGTAAAG+AGG | - | chr4.1:23507771-23507790 | MS.gene26513:CDS | 30.0% | |
| ! | AAAAGTATACCAGCACAAAA+AGG | + | chr4.1:23507961-23507980 | None:intergenic | 30.0% |
| !! | GAAGGATATATGGTTGATAA+TGG | - | chr4.1:23507427-23507446 | MS.gene26513:intron | 30.0% |
| !! | GAATCATAATTTGTTGGTAG+CGG | + | chr4.1:23508114-23508133 | None:intergenic | 30.0% |
| !! | TTTTTAGTCAAGTAGCTTAG+TGG | - | chr4.1:23508007-23508026 | MS.gene26513:intron | 30.0% |
| AAATGGTCACGAAATAGAGA+AGG | - | chr4.1:23507409-23507428 | MS.gene26513:intron | 35.0% | |
| AGATAGGATACCTCAAGTTT+GGG | + | chr4.1:23507535-23507554 | None:intergenic | 35.0% | |
| ATTGTAGGATTGTAAAGAGG+TGG | - | chr4.1:23507774-23507793 | MS.gene26513:CDS | 35.0% | |
| CTATAACAAAAGAGGGAAAG+AGG | - | chr4.1:23507852-23507871 | MS.gene26513:CDS | 35.0% | |
| GTAAAGAGGTGGTTTATGAA+TGG | - | chr4.1:23507785-23507804 | MS.gene26513:CDS | 35.0% | |
| TAGATAGGATACCTCAAGTT+TGG | + | chr4.1:23507536-23507555 | None:intergenic | 35.0% | |
| TGAAAGCTAAGGAGAGAAAA+TGG | - | chr4.1:23507392-23507411 | MS.gene26513:intron | 35.0% | |
| TGCAAATGCATTCCTTGTAT+GGG | - | chr4.1:23507880-23507899 | MS.gene26513:intron | 35.0% | |
| TTAAATGGTTGCAGCCATAT+GGG | - | chr4.1:23508361-23508380 | MS.gene26513:CDS | 35.0% | |
| TTGCAAATGCATTCCTTGTA+TGG | - | chr4.1:23507879-23507898 | MS.gene26513:intron | 35.0% | |
| ! | TCAGACATGTCTGTATTTTG+TGG | + | chr4.1:23508263-23508282 | None:intergenic | 35.0% |
| ! | TTAAGGGCTTTGACTTCAAA+TGG | - | chr4.1:23508431-23508450 | MS.gene26513:CDS | 35.0% |
| !! | ATAATTTGTTGGTAGCGGTA+AGG | + | chr4.1:23508109-23508128 | None:intergenic | 35.0% |
| !!! | TCGTTTTTTCCTTTTTGTGC+TGG | - | chr4.1:23507949-23507968 | MS.gene26513:intron | 35.0% |
| AAACTCACACACCTTAAGTG+TGG | - | chr4.1:23508032-23508051 | MS.gene26513:intron | 40.0% | |
| ACACCTTAAGTGTGGATGAA+TGG | - | chr4.1:23508040-23508059 | MS.gene26513:intron | 40.0% | |
| AGAAGAATCAGGGTAAGTCA+TGG | + | chr4.1:23507470-23507489 | None:intergenic | 40.0% | |
| AGAATCTTGGGTTCGAACTT+AGG | - | chr4.1:23508063-23508082 | MS.gene26513:intron | 40.0% | |
| AGTCAAACCAAAGAGAGTCT+AGG | + | chr4.1:23507559-23507578 | None:intergenic | 40.0% | |
| ATATATGTAGCGAAGCCTGA+GGG | - | chr4.1:23508137-23508156 | MS.gene26513:CDS | 40.0% | |
| CAAAGAGAGTCTAGGTAGAT+AGG | + | chr4.1:23507551-23507570 | None:intergenic | 40.0% | |
| CATATGGCTGCAACCATTTA+AGG | + | chr4.1:23508362-23508381 | None:intergenic | 40.0% | |
| CTATCTACCTAGACTCTCTT+TGG | - | chr4.1:23507549-23507568 | MS.gene26513:intron | 40.0% | |
| CTTAAATGGTTGCAGCCATA+TGG | - | chr4.1:23508360-23508379 | MS.gene26513:CDS | 40.0% | |
| GAAGAATCAGGGTAAGTCAT+GGG | + | chr4.1:23507469-23507488 | None:intergenic | 40.0% | |
| GAATCTTGGGTTCGAACTTA+GGG | - | chr4.1:23508064-23508083 | MS.gene26513:intron | 40.0% | |
| GAGAAACAGGAGAAGAATCA+GGG | + | chr4.1:23507480-23507499 | None:intergenic | 40.0% | |
| GATAGGATACCTCAAGTTTG+GGG | + | chr4.1:23507534-23507553 | None:intergenic | 40.0% | |
| GCAACCATTTAAGGAGAGTT+AGG | + | chr4.1:23508353-23508372 | None:intergenic | 40.0% | |
| GCATTACCAATTCCCATACA+AGG | + | chr4.1:23507895-23507914 | None:intergenic | 40.0% | |
| GGAAGGGATTACAGTAAAGT+CGG | - | chr4.1:23508394-23508413 | MS.gene26513:CDS | 40.0% | |
| GTGGATGAATGGAGAATCTT+GGG | - | chr4.1:23508051-23508070 | MS.gene26513:intron | 40.0% | |
| TAAATGGTTGCAGCCATATG+GGG | - | chr4.1:23508362-23508381 | MS.gene26513:CDS | 40.0% | |
| TACGCCTAACTCTCCTTAAA+TGG | - | chr4.1:23508346-23508365 | MS.gene26513:CDS | 40.0% | |
| TATATATGTAGCGAAGCCTG+AGG | - | chr4.1:23508136-23508155 | MS.gene26513:CDS | 40.0% | |
| TCTCCATTCATCCACACTTA+AGG | + | chr4.1:23508046-23508065 | None:intergenic | 40.0% | |
| TGCATTCCTTGTATGGGAAT+TGG | - | chr4.1:23507886-23507905 | MS.gene26513:intron | 40.0% | |
| TGTGGATGAATGGAGAATCT+TGG | - | chr4.1:23508050-23508069 | MS.gene26513:intron | 40.0% | |
| !! | GGTGCTGCTTAGCTATTTAA+GGG | - | chr4.1:23508415-23508434 | MS.gene26513:CDS | 40.0% |
| AGCTTACATATCCGGATCCT+TGG | + | chr4.1:23507831-23507850 | None:intergenic | 45.0% | |
| GAGGTGGTTTATGAATGGAC+TGG | - | chr4.1:23507790-23507809 | MS.gene26513:CDS | 45.0% | |
| GGAGAAACAGGAGAAGAATC+AGG | + | chr4.1:23507481-23507500 | None:intergenic | 45.0% | |
| GTGGATGAAGGTGAAAGCTA+AGG | - | chr4.1:23507381-23507400 | MS.gene26513:intron | 45.0% | |
| TAAGTCATGGGAAGTGGAAG+AGG | + | chr4.1:23507457-23507476 | None:intergenic | 45.0% | |
| TCAACGACTTCAGGAGAAAC+AGG | + | chr4.1:23507493-23507512 | None:intergenic | 45.0% | |
| TCAATGTGACCCCAAACTTG+AGG | - | chr4.1:23507522-23507541 | MS.gene26513:intron | 45.0% | |
| ! | CAAGTTTGGGGTCACATTGA+AGG | + | chr4.1:23507522-23507541 | None:intergenic | 45.0% |
| !! | CGGTGCTGCTTAGCTATTTA+AGG | - | chr4.1:23508414-23508433 | MS.gene26513:CDS | 45.0% |
| AAGAGACGAGGGATAGAGGT+GGG | + | chr4.1:23507286-23507305 | None:intergenic | 50.0% | |
| AGGCGTTCATCAACGACTTC+AGG | + | chr4.1:23507502-23507521 | None:intergenic | 50.0% | |
| TCAGGGTAAGTCATGGGAAG+TGG | + | chr4.1:23507463-23507482 | None:intergenic | 50.0% | |
| AAAGGTCTCCGGCAGAAGCA+CGG | + | chr4.1:23507255-23507274 | None:intergenic | 55.0% | |
| AGAGCGACTGGAAGAGACGA+GGG | + | chr4.1:23507297-23507316 | None:intergenic | 55.0% | |
| ATGGTTGCAGCCATATGGGG+TGG | - | chr4.1:23508365-23508384 | MS.gene26513:CDS | 55.0% | |
| CGGTAAGGACGCTGACATGT+TGG | + | chr4.1:23508094-23508113 | None:intergenic | 55.0% | |
| CTGGAAGAGACGAGGGATAG+AGG | + | chr4.1:23507290-23507309 | None:intergenic | 55.0% | |
| GAAGAGACGAGGGATAGAGG+TGG | + | chr4.1:23507287-23507306 | None:intergenic | 55.0% | |
| TGAGCGCTCTCAAATCCCTC+AGG | + | chr4.1:23508155-23508174 | None:intergenic | 55.0% | |
| TGTCGTAGCTGCCAAGGATC+CGG | - | chr4.1:23507817-23507836 | MS.gene26513:CDS | 55.0% | |
| !! | AAGCACGGTAGCGGAAGATG+AGG | + | chr4.1:23507240-23507259 | None:intergenic | 55.0% |
| !! | AGCACGGTAGCGGAAGATGA+GGG | + | chr4.1:23507239-23507258 | None:intergenic | 55.0% |
| AGCCATATGGGGTGGAGTGG+GGG | - | chr4.1:23508373-23508392 | MS.gene26513:CDS | 60.0% | |
| ATATGGGGTGGAGTGGGGGA+AGG | - | chr4.1:23508377-23508396 | MS.gene26513:CDS | 60.0% | |
| CAGCCATATGGGGTGGAGTG+GGG | - | chr4.1:23508372-23508391 | MS.gene26513:CDS | 60.0% | |
| CTGCCGGAGACCTTTCACCA+CGG | - | chr4.1:23507260-23507279 | MS.gene26513:CDS | 60.0% | |
| CTTCATCCACTCGTTCCCGC+CGG | + | chr4.1:23507371-23507390 | None:intergenic | 60.0% | |
| GAGAGCGACTGGAAGAGACG+AGG | + | chr4.1:23507298-23507317 | None:intergenic | 60.0% | |
| GCAGCCATATGGGGTGGAGT+GGG | - | chr4.1:23508371-23508390 | MS.gene26513:CDS | 60.0% | |
| TAGAGGTGGGCCGTGGTGAA+AGG | + | chr4.1:23507273-23507292 | None:intergenic | 60.0% | |
| TATGGGGTGGAGTGGGGGAA+GGG | - | chr4.1:23508378-23508397 | MS.gene26513:CDS | 60.0% | |
| TGCAGCCATATGGGGTGGAG+TGG | - | chr4.1:23508370-23508389 | MS.gene26513:CDS | 60.0% | |
| TTCCCCCACTCCACCCCATA+TGG | + | chr4.1:23508378-23508397 | None:intergenic | 60.0% | |
| TTCCGCTACCGTGCTTCTGC+CGG | - | chr4.1:23507244-23507263 | MS.gene26513:CDS | 60.0% | |
| ! | GGCAAGTGTCGTAGCTGCCA+AGG | - | chr4.1:23507811-23507830 | MS.gene26513:CDS | 60.0% |
| ACCACCTCGGCCGTCGTAGA+AGG | - | chr4.1:23507325-23507344 | MS.gene26513:intron | 65.0% | |
| ACCTCGGCCGTCGTAGAAGG+TGG | - | chr4.1:23507328-23507347 | MS.gene26513:intron | 65.0% | |
| ACCTTCTACGACGGCCGAGG+TGG | + | chr4.1:23507329-23507348 | None:intergenic | 65.0% | |
| AGCGGCGCCACCTTCTACGA+CGG | + | chr4.1:23507338-23507357 | None:intergenic | 65.0% | |
| CGGCGGGAACGAGTGGATGA+AGG | - | chr4.1:23507369-23507388 | MS.gene26513:intron | 65.0% | |
| GGGCCGTGGTGAAAGGTCTC+CGG | + | chr4.1:23507266-23507285 | None:intergenic | 65.0% | |
| TCTACGACGGCCGAGGTGGT+GGG | + | chr4.1:23507325-23507344 | None:intergenic | 65.0% | |
| TTCTACGACGGCCGAGGTGG+TGG | + | chr4.1:23507326-23507345 | None:intergenic | 65.0% | |
| ! | CTCCGGCAGAAGCACGGTAG+CGG | + | chr4.1:23507249-23507268 | None:intergenic | 65.0% |
| CGAGGGATAGAGGTGGGCCG+TGG | + | chr4.1:23507280-23507299 | None:intergenic | 70.0% | |
| CTACGACGGCCGAGGTGGTG+GGG | + | chr4.1:23507324-23507343 | None:intergenic | 70.0% | |
| GCCACCTTCTACGACGGCCG+AGG | + | chr4.1:23507332-23507351 | None:intergenic | 70.0% | |
| GCTCTCCCTCCCCACCACCT+CGG | - | chr4.1:23507312-23507331 | MS.gene26513:intron | 70.0% | |
| TGGTGGGGAGGGAGAGCGAC+TGG | + | chr4.1:23507309-23507328 | None:intergenic | 70.0% | |
| !! | GACGGCCGAGGTGGTGGGGA+GGG | + | chr4.1:23507320-23507339 | None:intergenic | 75.0% |
| ! | CCCGCCGGCGCGTCTAGCAG+CGG | + | chr4.1:23507356-23507375 | None:intergenic | 80.0% |
| ! | GCCGCTGCTAGACGCGCCGG+CGG | - | chr4.1:23507352-23507371 | MS.gene26513:intron | 80.0% |
| ! | GGCGCCGCTGCTAGACGCGC+CGG | - | chr4.1:23507349-23507368 | MS.gene26513:intron | 80.0% |
| !! | CCGCTGCTAGACGCGCCGGC+GGG | - | chr4.1:23507353-23507372 | MS.gene26513:intron | 80.0% |
| !! | GACGCGCCGGCGGGAACGAG+TGG | - | chr4.1:23507362-23507381 | MS.gene26513:intron | 80.0% |
| !!! | CGACGGCCGAGGTGGTGGGG+AGG | + | chr4.1:23507321-23507340 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 23507211 | 23508457 | 23507211 | ID=MS.gene26513 |
| chr4.1 | mRNA | 23507211 | 23508457 | 23507211 | ID=MS.gene26513.t1;Parent=MS.gene26513 |
| chr4.1 | exon | 23508125 | 23508457 | 23508125 | ID=MS.gene26513.t1.exon1;Parent=MS.gene26513.t1 |
| chr4.1 | CDS | 23508125 | 23508457 | 23508125 | ID=cds.MS.gene26513.t1;Parent=MS.gene26513.t1 |
| chr4.1 | exon | 23507761 | 23507887 | 23507761 | ID=MS.gene26513.t1.exon2;Parent=MS.gene26513.t1 |
| chr4.1 | CDS | 23507761 | 23507887 | 23507761 | ID=cds.MS.gene26513.t1;Parent=MS.gene26513.t1 |
| chr4.1 | exon | 23507211 | 23507293 | 23507211 | ID=MS.gene26513.t1.exon3;Parent=MS.gene26513.t1 |
| chr4.1 | CDS | 23507211 | 23507293 | 23507211 | ID=cds.MS.gene26513.t1;Parent=MS.gene26513.t1 |
| Gene Sequence |
| Protein sequence |
