AlfalfaGEDB | MS.gene73783

M. sativa cultivar XinJiangDaYe / MS.gene73783

KEGG: K01698
GO: GO:0003674 GO:0003824 GO:0004655 GO:0005488 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0043167 GO:0043169 GO:0044237 GO:0044249 GO:0044271 GO:0046483 GO:0046872 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00490.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73783.t1	XP_003602068.1	98.6	282	4	0	1	282	132	413	9.20E-157	562.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73783.t1	P30124	97.9	282	6	0	1	282	117	398	2.5e-158	559.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73783.t1	B7FJZ6	98.6	282	4	0	1	282	132	413	6.6e-157	562.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene73783	-0.80802	3.80E-50	-1.69E-46
MS.gene049182	MS.gene73783	-0.8099	1.51E-50	-1.69E-46
MS.gene05087	MS.gene73783	0.825074	5.72E-54	-1.69E-46
MS.gene052040	MS.gene73783	-0.804623	1.98E-49	-1.69E-46
MS.gene053272	MS.gene73783	0.82783	1.26E-54	-1.69E-46
MS.gene053495	MS.gene73783	0.817434	3.30E-52	-1.69E-46
MS.gene055150	MS.gene73783	-0.827301	1.69E-54	-1.69E-46
MS.gene057148	MS.gene73783	0.908172	2.29E-81	-1.69E-46
MS.gene058095	MS.gene73783	-0.807716	4.41E-50	-1.69E-46
MS.gene059026	MS.gene73783	0.850913	1.25E-60	-1.69E-46

Showing 1 to 10 of 14 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73783.t1	MTR_3g088610	98.582	282	4	0	1	282	132	413	0.0	576
MS.gene73783.t1	MTR_3g088610	98.684	228	3	0	1	228	132	359	1.36e-168	471

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73783.t1	AT1G69740	92.553	282	21	0	1	282	149	430	0.0	548
MS.gene73783.t1	AT1G69740	92.553	282	21	0	1	282	149	430	0.0	548
MS.gene73783.t1	AT1G69740	92.553	282	21	0	1	282	149	430	0.0	548
MS.gene73783.t1	AT1G44318	74.113	282	67	1	1	282	126	401	6.73e-152	431

Showing 1 to 4 of 4 entries

Previous1Next

Find 72 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTCTCTGTAGTTTGC+CGG	0.370396	3.3:-73644556	None:intergenic
AAGCCTCTCTGTAGTTTGCC+GGG	0.500631	3.3:-73644555	None:intergenic
AATAGAACCTTCAAAGCATC+TGG	0.395086	3.3:-73642632	None:intergenic
AATTCAGGTTGCAAAAGCAC+GGG	0.565064	3.3:+73642571	MS.gene73783:intron
ACCCCAATTGGTGCTATGCC+CGG	0.482806	3.3:+73641974	None:intergenic
ACGACCATCCATCATATCGC+TGG	0.517199	3.3:-73643660	None:intergenic
ACTCGATGATTAAGGCTGGT+GGG	0.569222	3.3:+73645539	MS.gene73783:CDS
AGAACCTGGTATGCTGCAAT+TGG	0.471730	3.3:-73644780	None:intergenic
AGAAGGAGCTGATATTCTAT+TGG	0.434691	3.3:+73644603	MS.gene73783:CDS
AGAGGCTTTGACTGAAATGA+GGG	0.601731	3.3:+73644570	MS.gene73783:CDS

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATCGACAATTGCTAATGA+TGG	+	chr3.3:73643896-73643915	MS.gene73783:intron	30.0%
AAGTATAGCAAGAAAAACCT+TGG	-	chr3.3:73643556-73643575	None:intergenic	30.0%
AATCCGATTCTTTCCAAAAA+TGG	+	chr3.3:73644939-73644958	MS.gene73783:intron	30.0%
AATCGACAATTGCTAATGAT+GGG	+	chr3.3:73643897-73643916	MS.gene73783:intron	30.0%
AGAAACCTGTTGTGAATAAA+GGG	-	chr3.3:73645512-73645531	None:intergenic	30.0%
AGAATCCCTGAACAAAATAA+TGG	-	chr3.3:73643507-73643526	None:intergenic	30.0%
AGTCAATTAGAGAAAACCTT+TGG	+	chr3.3:73645428-73645447	MS.gene73783:intron	30.0%
ATGACATTACCATTCAAAAG+TGG	+	chr3.3:73642182-73642201	MS.gene73783:intron	30.0%
CAGAACATGATTCATTTCAT+TGG	+	chr3.3:73643030-73643049	MS.gene73783:intron	30.0%
CTATTATAGGTTGTAGCATT+GGG	+	chr3.3:73643995-73644014	MS.gene73783:intron	30.0%

Showing 1 to 10 of 240 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	73641989	73645693	73641989	ID=MS.gene73783
chr3.3	mRNA	73641989	73645693	73641989	ID=MS.gene73783.t1;Parent=MS.gene73783
chr3.3	exon	73641989	73642036	73641989	ID=MS.gene73783.t1.exon1;Parent=MS.gene73783.t1
chr3.3	CDS	73641989	73642036	73641989	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73642578	73642646	73642578	ID=MS.gene73783.t1.exon2;Parent=MS.gene73783.t1
chr3.3	CDS	73642578	73642646	73642578	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73642725	73642808	73642725	ID=MS.gene73783.t1.exon3;Parent=MS.gene73783.t1
chr3.3	CDS	73642725	73642808	73642725	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73642902	73642971	73642902	ID=MS.gene73783.t1.exon4;Parent=MS.gene73783.t1
chr3.3	CDS	73642902	73642971	73642902	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73643401	73643456	73643401	ID=MS.gene73783.t1.exon5;Parent=MS.gene73783.t1
chr3.3	CDS	73643401	73643456	73643401	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73643632	73643753	73643632	ID=MS.gene73783.t1.exon6;Parent=MS.gene73783.t1
chr3.3	CDS	73643632	73643753	73643632	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73644371	73644442	73644371	ID=MS.gene73783.t1.exon7;Parent=MS.gene73783.t1
chr3.3	CDS	73644371	73644442	73644371	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73644543	73644624	73644543	ID=MS.gene73783.t1.exon8;Parent=MS.gene73783.t1
chr3.3	CDS	73644543	73644624	73644543	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73644720	73644797	73644720	ID=MS.gene73783.t1.exon9;Parent=MS.gene73783.t1
chr3.3	CDS	73644720	73644797	73644720	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1
chr3.3	exon	73645526	73645693	73645526	ID=MS.gene73783.t1.exon10;Parent=MS.gene73783.t1
chr3.3	CDS	73645526	73645693	73645526	ID=cds.MS.gene73783.t1;Parent=MS.gene73783.t1

Gene Sequence

>MS.gene73783

ATGCCCGGATGCTACAGGCTTGGTTGGAGACACGGACTGTTGCAAGAGGTTTTTATATGGCTCTACTCTTTCTGTGTCTTATACTCGTGCATGTTCTTTGTTATCTTAAGTAGCATTTTTATGTTTTGTATCTTAAATTTAGCTGAGAAAATGTTGGACTTTGAAAATGTAGCAGGATCAATCACAAGCTAATATGACATTACCATTCAAAAGTGGTATTGAATTGGGGTAAAACACGTCCATTGCTGTAAAAAAAAAACATTTTTAAAGGGAGATTATGCAGATATTTTTTTGGCATAATTTTATTCTTTACCGATCTGGTCTAAGAGTTTGGATAGATTTTATTGGGTATTTTGCTTCCAATGTTGAACTTCTCATTACATTGCTTGATTGTTTCTGAGGAATTTTTTCTTTCAAATATTGTAGTATATTTTAAGTTATAACTTATAACTGATGAGTACACAAACCCAAACAAACATAAAACCTTTTCTTTTTTATCTTCTAAACTGCATGCGTGATAGTGACATTATTCTTGTTATTCCTTAGTATTGAATTTTAGTTTAATTTCAGTGAGCATTTTATAATTCAGGTTGCAAAAGCACGGGATGTTGGTGTTAACAGTGTTGTGCTCTTCCCCAAAATTCCAGATGCTTTGAAGGTTCTATTTTTCTCTCACACTTGCCATCAATTTTTGGTAGAATATATGTAATCTAGTCTAACAAGTTTCCCCCTTTAGACCCCCACAGGAGATGAGGCATACAATGAGAATGGCTTAGTGCCTCGAACTATACGATTACTTAAGGATAAATACCCTGATCTTGTAAGTGAACACAGTTTTATGTTTTGAGAATGTTATATTTTTCTGGTGCATGTAAGAAGATTAATCCAATATCCTTGTTCAACTGTTGTTCAGGTTATTTATACAGATGTTGCATTAGACCCATATTCTTCAGATGGGCATGACGGCATTGTTAGAGAAGATGGTACGCTAAAAACTTTTCCTTTTGTCGTCAAAATCTTTTTCTCAAACCTATTTTGTTACAGAACATGATTCATTTCATTGGCTTATAATTCATAAGAAATGTTCTGTGAATGTGACATATAATCTAAACATTTTACATTTGGATGATGGAATTTGTAAGTCATGCCAGCAGCATACTTCTAGCATTAGTTTAATACTTGCTGAATATGTTTTTAGTGTGTGTACCTTTAATATTATTCCTGGAAAAGAAATTAAAAAAGAAATCGTCGGGAATTAAATTGTGGCTTTATCTCCTTCCTGTATGAACTTGTGTTGGTAAAAGCCTAGGATTTGCATGATTTGAACTATTCTTGAAGGAAGTGGCAAGTGGCCTTTCTTGATTGTAGTCAATAAAGTACTAATTATAATGTATATCCTTAATATCTTGTAGGAGTTATCATGAATGATGAGACTGTTCATCAGCTTTGTAAACAAGCTGTAGCCCAGGTAATATAACTACATCTTTCATGTGTACATCTTCAACTAGGAAGTTACCATTATTTTGTTCAGGGATTCTTGAACAAATTACTCACCTTCTATGTTCCAAGGTTTTTCTTGCTATACTTCTATATCCGCACCAAGACACTAACATAATTTAGTTTGTGTTTTTATTTTATGAAAGGCCCGTGCTGGAGCAGATGTGGTCAGCCCCAGCGATATGATGGATGGTCGTGTTGGAGCAATGCGAGCAGCTCTCGATGCTGAAGGCTTTCAGCATGTTTCTATAATGTCATATACAGCAAAGTAATTTGATCGCTTGGCCATTTCCTTTTCCGATCTTACTTTCTGTTTTTGCCTGCATGCATTGGAAATTATTGAAGTTTATGTCAGTTACCTGAGCTTTAGAAATAAGTTTAGTAAAAAGAAGGAAATTATTTGAAAACTGAAATCGACAATTGCTAATGATGGGCATTTTTTTTTATTGATCTGGTATAAACTTACAAGTTTGTGTTAAGAAGGATCTAGACTTACTATCGATGGCTATCTATTATAGGTTGTAGCATTGGGTATCGGTGAAGATATTCAAAATGTGTGGCATATAAATGATTTTATAAGTGAAGCATTTCCATTATGCACAAGCTGGTTTCTTTCTTATGCAAGTTATGAACAATTTTATCTTCCTTTCGCCAATAACCGTAGCGTTCAAATTCCTTTAGTGCATCTTGTAGCTGCCATGAGCATCTCACTATATTTGCTAATTTCTAATTGTCCCTGATTTGCTCATTGGAGAACCAATTCTACAAAAATAGAAATTATGACTAACAAGATGGATTGGTAGATGTTGCTATTAGTATCATGCATATTTTCTTGTCGGTTATATAGCTCAGTTCTAAATTATGCCGTTTATTGGTTGCCAACAGGTACGCGAGTTCATTTTATGGCCCATTTAGGGAAGCATTGGACTCAAACCCCCGTTTTGGAGATAAAAAGACGTATGTATTACCTTGAAATTGAACTGAGTGCCAAATATTTAATCTATTTTAAATTATTGATTATTTACGTTGCCATATACTTGGTCTGGCTGAACAAAAGCTATCAGATGAACCCGGCAAACTACAGAGAGGCTTTGACTGAAATGAGGGAAGATGAATCAGAAGGAGCTGATATTCTATTGGTTGGTTTAGTTTTCTTATGTATACGATCATAGTTAGGAATGGAACTCATCTTATGCTCATTTTTGTACTGACTTTAGAAAATTTGCATGTGCAGGTGAAGCCTGGGCTTCCTTATTTGGATATCATAAGGCTACTCAGAGATAATTCTCCGCTGCCAATTGCAGCATACCAGGTTCTTCTCTGGCCCATTCTAGTTCTTGGCATAAACAAAAGTGATGCTTATATTTTTATATCGAGCTGGGGCACAGGTTTTATGGTTGCTTCAACAGTTATTGTTCGTATGCTATTCTGCTATTACGTGTCATCAAATTTTAATCCGATTCTTTCCAAAAATGGTTAATCGGGAATTTGTTTGTGTAGTGATCATATATCTGTTGTCTCATGTGAATCTTCCAGTTTGGGAATATGAACTGCTGCATATGCTGTTTATAGCATTGAATAAAAAAAAGTTGTTTCAAACATTTTTAACTGTCAAGACAATGAAGATTTTAAGTACAAAGTTGTTCAAGTTGAAGAAGAAGCTTGTTTGATGATTTAATTTAATAGTTTCTTTGAAACGCTTTATTGTAATAAACTTTGGCTGTCTGTGTTCTAGAAAGATTGATCAACTTTTTCTCTTCCTTTTCCCTTACCCGTCTGTAAGGTCTGGAACATCATTTAGACAGTGGAAAATACATGATAAGAAGATAAGATACAAAAACAGTTGGTAAAGAATGTGAACAAGTATACAACATACAAATGTTGTTCATCATAGATATTATGGATGCCATGATGCTTGACACCCTACCCTTAAGATTAAAGCAGTCAATTAGAGAAAACCTTTGGTTTTATGTTAATGATGATAAGATATATTTCACGTTTGCTTTGCTTTATTAATTTGACCCCCTTTATTCACAACAGGTTTCTGGTGAGTACTCGATGATTAAGGCTGGTGGGGCTCTTAAAATGATTGATGAAGAAAAGGTGATGATGGAGTCATTACTGTGCCTTAGACGTGCCGGTGCTGACATCATCCTAACATATTTTGCTCTACAAGCTGCGAGATTTTTGTGTGGAGAAAAAAGGTGA

Protein sequence

>MS.gene73783.t1

MPGCYRLGWRHGLLQEVAKARDVGVNSVVLFPKIPDALKTPTGDEAYNENGLVPRTIRLLKDKYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVGAMRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYSMIKAGGALKMIDEEKVMMESLLCLRRAGADIILTYFALQAARFLCGEKR