Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06857.t1 | XP_003602321.2 | 98 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 9.30E-105 | 389.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06857.t1 | Q9M276 | 76.2 | 63 | 15 | 0 | 29 | 91 | 21 | 83 | 7.9e-20 | 99.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06857.t1 | G7J874 | 98.0 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 6.7e-105 | 389.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06857.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene06857 | 0.843428 | 1.41E-58 | -1.69E-46 |
| MS.gene049159 | MS.gene06857 | 0.82159 | 3.72E-53 | -1.69E-46 |
| MS.gene04918 | MS.gene06857 | 0.814362 | 1.60E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene06857 | 0.806023 | 1.01E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene06857 | 0.866796 | 2.19E-65 | -1.69E-46 |
| MS.gene049283 | MS.gene06857 | 0.859201 | 4.87E-63 | -1.69E-46 |
| MS.gene049343 | MS.gene06857 | 0.83549 | 1.63E-56 | -1.69E-46 |
| MS.gene049368 | MS.gene06857 | 0.836351 | 9.85E-57 | -1.69E-46 |
| MS.gene049419 | MS.gene06857 | -0.837688 | 4.48E-57 | -1.69E-46 |
| MS.gene049452 | MS.gene06857 | 0.83887 | 2.22E-57 | -1.69E-46 |
| MS.gene049499 | MS.gene06857 | 0.830238 | 3.29E-55 | -1.69E-46 |
| MS.gene049669 | MS.gene06857 | 0.807809 | 4.22E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene06857 | 0.85395 | 1.70E-61 | -1.69E-46 |
| MS.gene050073 | MS.gene06857 | 0.805648 | 1.21E-49 | -1.69E-46 |
| MS.gene050105 | MS.gene06857 | 0.840549 | 8.13E-58 | -1.69E-46 |
| MS.gene050355 | MS.gene06857 | 0.802386 | 5.75E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene06857 | 0.820202 | 7.77E-53 | -1.69E-46 |
| MS.gene050559 | MS.gene06857 | 0.858707 | 6.85E-63 | -1.69E-46 |
| MS.gene050561 | MS.gene06857 | 0.854395 | 1.27E-61 | -1.69E-46 |
| MS.gene050562 | MS.gene06857 | 0.844343 | 8.02E-59 | -1.69E-46 |
| MS.gene050646 | MS.gene06857 | 0.813804 | 2.13E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene06857 | 0.840793 | 7.02E-58 | -1.69E-46 |
| MS.gene050737 | MS.gene06857 | 0.802971 | 4.36E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene06857 | 0.83069 | 2.55E-55 | -1.69E-46 |
| MS.gene050941 | MS.gene06857 | 0.818606 | 1.80E-52 | -1.69E-46 |
| MS.gene050962 | MS.gene06857 | 0.827631 | 1.41E-54 | -1.69E-46 |
| MS.gene051122 | MS.gene06857 | 0.80295 | 4.40E-49 | -1.69E-46 |
| MS.gene051181 | MS.gene06857 | 0.822829 | 1.92E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene06857 | 0.806009 | 1.01E-49 | -1.69E-46 |
| MS.gene051275 | MS.gene06857 | 0.802222 | 6.22E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene06857 | 0.837297 | 5.65E-57 | -1.69E-46 |
| MS.gene051332 | MS.gene06857 | 0.840465 | 8.55E-58 | -1.69E-46 |
| MS.gene051343 | MS.gene06857 | 0.810857 | 9.36E-51 | -1.69E-46 |
| MS.gene051363 | MS.gene06857 | 0.82799 | 1.15E-54 | -1.69E-46 |
| MS.gene051365 | MS.gene06857 | 0.811192 | 7.92E-51 | -1.69E-46 |
| MS.gene051368 | MS.gene06857 | 0.849052 | 4.14E-60 | -1.69E-46 |
| MS.gene051574 | MS.gene06857 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene051597 | MS.gene06857 | 0.817494 | 3.20E-52 | -1.69E-46 |
| MS.gene051676 | MS.gene06857 | 0.813123 | 3.00E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene06857 | 0.842468 | 2.54E-58 | -1.69E-46 |
| MS.gene051800 | MS.gene06857 | 0.804653 | 1.95E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene06857 | 0.835972 | 1.23E-56 | -1.69E-46 |
| MS.gene052016 | MS.gene06857 | 0.802992 | 4.31E-49 | -1.69E-46 |
| MS.gene052108 | MS.gene06857 | 0.859306 | 4.53E-63 | -1.69E-46 |
| MS.gene052333 | MS.gene06857 | 0.801361 | 9.34E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene06857 | 0.820527 | 6.55E-53 | -1.69E-46 |
| MS.gene052500 | MS.gene06857 | 0.834647 | 2.66E-56 | -1.69E-46 |
| MS.gene052502 | MS.gene06857 | 0.830482 | 2.86E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene06857 | 0.81064 | 1.04E-50 | -1.69E-46 |
| MS.gene052518 | MS.gene06857 | 0.82085 | 5.51E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene06857 | 0.848719 | 5.12E-60 | -1.69E-46 |
| MS.gene052533 | MS.gene06857 | 0.801017 | 1.10E-48 | -1.69E-46 |
| MS.gene052534 | MS.gene06857 | 0.823411 | 1.41E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene06857 | 0.842525 | 2.45E-58 | -1.69E-46 |
| MS.gene052584 | MS.gene06857 | 0.845483 | 3.95E-59 | -1.69E-46 |
| MS.gene052674 | MS.gene06857 | 0.824877 | 6.36E-54 | -1.69E-46 |
| MS.gene052675 | MS.gene06857 | 0.826969 | 2.03E-54 | -1.69E-46 |
| MS.gene052677 | MS.gene06857 | 0.828202 | 1.02E-54 | -1.69E-46 |
| MS.gene052685 | MS.gene06857 | 0.805685 | 1.18E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene06857 | 0.824562 | 7.55E-54 | -1.69E-46 |
| MS.gene052826 | MS.gene06857 | 0.83153 | 1.58E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene06857 | 0.807718 | 4.41E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene06857 | 0.857057 | 2.12E-62 | -1.69E-46 |
| MS.gene053006 | MS.gene06857 | 0.839037 | 2.01E-57 | -1.69E-46 |
| MS.gene053008 | MS.gene06857 | 0.802133 | 6.48E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene06857 | 0.805624 | 1.22E-49 | -1.69E-46 |
| MS.gene05308 | MS.gene06857 | 0.840431 | 8.73E-58 | -1.69E-46 |
| MS.gene053166 | MS.gene06857 | 0.805259 | 1.46E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene06857 | 0.85348 | 2.32E-61 | -1.69E-46 |
| MS.gene053272 | MS.gene06857 | -0.806163 | 9.40E-50 | -1.69E-46 |
| MS.gene053296 | MS.gene06857 | 0.808618 | 2.83E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene06857 | 0.819044 | 1.43E-52 | -1.69E-46 |
| MS.gene053321 | MS.gene06857 | 0.81123 | 7.77E-51 | -1.69E-46 |
| MS.gene05350 | MS.gene06857 | 0.838955 | 2.11E-57 | -1.69E-46 |
| MS.gene05364 | MS.gene06857 | 0.8476 | 1.04E-59 | -1.69E-46 |
| MS.gene053931 | MS.gene06857 | 0.86763 | 1.19E-65 | -1.69E-46 |
| MS.gene053963 | MS.gene06857 | 0.817212 | 3.71E-52 | -1.69E-46 |
| MS.gene05410 | MS.gene06857 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene06857 | 0.805796 | 1.12E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene06857 | 0.836361 | 9.79E-57 | -1.69E-46 |
| MS.gene054236 | MS.gene06857 | 0.809224 | 2.10E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene06857 | 0.856194 | 3.79E-62 | -1.69E-46 |
| MS.gene054576 | MS.gene06857 | 0.823363 | 1.44E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene06857 | 0.825338 | 4.95E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene06857 | 0.860597 | 1.85E-63 | -1.69E-46 |
| MS.gene054657 | MS.gene06857 | 0.84104 | 6.05E-58 | -1.69E-46 |
| MS.gene054720 | MS.gene06857 | 0.800595 | 1.34E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene06857 | 0.80675 | 7.07E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene06857 | 0.853927 | 1.73E-61 | -1.69E-46 |
| MS.gene054893 | MS.gene06857 | 0.859647 | 3.58E-63 | -1.69E-46 |
| MS.gene054957 | MS.gene06857 | 0.803813 | 2.91E-49 | -1.69E-46 |
| MS.gene054994 | MS.gene06857 | 0.830681 | 2.56E-55 | -1.69E-46 |
| MS.gene055166 | MS.gene06857 | 0.801703 | 7.94E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene06857 | 0.842705 | 2.20E-58 | -1.69E-46 |
| MS.gene055222 | MS.gene06857 | 0.82576 | 3.93E-54 | -1.69E-46 |
| MS.gene055227 | MS.gene06857 | 0.807735 | 4.37E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene06857 | 0.818198 | 2.22E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene06857 | 0.828165 | 1.05E-54 | -1.69E-46 |
| MS.gene055586 | MS.gene06857 | 0.830056 | 3.64E-55 | -1.69E-46 |
| MS.gene055589 | MS.gene06857 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene06857 | 0.828331 | 9.54E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene06857 | 0.81302 | 3.16E-51 | -1.69E-46 |
| MS.gene055724 | MS.gene06857 | 0.829316 | 5.51E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene06857 | 0.833997 | 3.87E-56 | -1.69E-46 |
| MS.gene055841 | MS.gene06857 | 0.867841 | 1.02E-65 | -1.69E-46 |
| MS.gene055926 | MS.gene06857 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene056045 | MS.gene06857 | 0.820673 | 6.06E-53 | -1.69E-46 |
| MS.gene056064 | MS.gene06857 | 0.809425 | 1.90E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene06857 | 0.830422 | 2.96E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene06857 | 0.84496 | 5.47E-59 | -1.69E-46 |
| MS.gene056366 | MS.gene06857 | 0.810102 | 1.36E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene06857 | 0.82476 | 6.78E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene06857 | 0.814886 | 1.23E-51 | -1.69E-46 |
| MS.gene056509 | MS.gene06857 | 0.814738 | 1.32E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene06857 | 0.816709 | 4.81E-52 | -1.69E-46 |
| MS.gene05659 | MS.gene06857 | 0.80586 | 1.09E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene06857 | 0.84858 | 5.60E-60 | -1.69E-46 |
| MS.gene056776 | MS.gene06857 | 0.845312 | 4.39E-59 | -1.69E-46 |
| MS.gene056779 | MS.gene06857 | 0.802122 | 6.52E-49 | -1.69E-46 |
| MS.gene056834 | MS.gene06857 | 0.845317 | 4.38E-59 | -1.69E-46 |
| MS.gene05686 | MS.gene06857 | 0.857307 | 1.78E-62 | -1.69E-46 |
| MS.gene05690 | MS.gene06857 | 0.835138 | 2.00E-56 | -1.69E-46 |
| MS.gene056973 | MS.gene06857 | 0.834918 | 2.27E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene06857 | 0.815316 | 9.84E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene06857 | 0.815839 | 7.53E-52 | -1.69E-46 |
| MS.gene057034 | MS.gene06857 | 0.837494 | 5.03E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene06857 | 0.834676 | 2.61E-56 | -1.69E-46 |
| MS.gene057155 | MS.gene06857 | 0.844427 | 7.61E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene06857 | 0.971687 | 1.48E-133 | -1.69E-46 |
| MS.gene057371 | MS.gene06857 | 0.847639 | 1.02E-59 | -1.69E-46 |
| MS.gene057392 | MS.gene06857 | 0.804136 | 2.50E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene06857 | 0.8034 | 3.55E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene06857 | 0.821988 | 3.01E-53 | -1.69E-46 |
| MS.gene057611 | MS.gene06857 | 0.814748 | 1.32E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene06857 | 0.844786 | 6.09E-59 | -1.69E-46 |
| MS.gene057855 | MS.gene06857 | 0.831038 | 2.09E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene06857 | 0.812708 | 3.70E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene06857 | 0.817201 | 3.73E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene06857 | 0.839886 | 1.21E-57 | -1.69E-46 |
| MS.gene058009 | MS.gene06857 | 0.831175 | 1.94E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene06857 | 0.820547 | 6.47E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene06857 | 0.810443 | 1.15E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene06857 | 0.828818 | 7.27E-55 | -1.69E-46 |
| MS.gene058159 | MS.gene06857 | 0.803018 | 4.26E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene06857 | -0.807551 | 4.78E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene06857 | 0.82564 | 4.20E-54 | -1.69E-46 |
| MS.gene058292 | MS.gene06857 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene058355 | MS.gene06857 | 0.828575 | 8.33E-55 | -1.69E-46 |
| MS.gene058427 | MS.gene06857 | 0.818391 | 2.01E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene06857 | 0.803909 | 2.78E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene06857 | 0.812647 | 3.82E-51 | -1.69E-46 |
| MS.gene058595 | MS.gene06857 | 0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene06857 | 0.821425 | 4.07E-53 | -1.69E-46 |
| MS.gene058769 | MS.gene06857 | 0.826246 | 3.01E-54 | -1.69E-46 |
| MS.gene058781 | MS.gene06857 | 0.837141 | 6.19E-57 | -1.69E-46 |
| MS.gene058783 | MS.gene06857 | 0.852575 | 4.22E-61 | -1.69E-46 |
| MS.gene058979 | MS.gene06857 | 0.851759 | 7.20E-61 | -1.69E-46 |
| MS.gene05897 | MS.gene06857 | 0.817532 | 3.14E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene06857 | 0.806593 | 7.63E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene06857 | 0.810247 | 1.27E-50 | -1.69E-46 |
| MS.gene059438 | MS.gene06857 | 0.827794 | 1.29E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene06857 | 0.826254 | 3.00E-54 | -1.69E-46 |
| MS.gene05952 | MS.gene06857 | 0.81677 | 4.66E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene06857 | 0.80598 | 1.03E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene06857 | 0.814253 | 1.69E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene06857 | -0.848783 | 4.92E-60 | -1.69E-46 |
| MS.gene059935 | MS.gene06857 | 0.805796 | 1.12E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene06857 | 0.809976 | 1.45E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene06857 | 0.800588 | 1.34E-48 | -1.69E-46 |
| MS.gene060244 | MS.gene06857 | 0.848261 | 6.86E-60 | -1.69E-46 |
| MS.gene060259 | MS.gene06857 | 0.819918 | 9.02E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene06857 | 0.818024 | 2.43E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene06857 | 0.824445 | 8.04E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene06857 | 0.846715 | 1.83E-59 | -1.69E-46 |
| MS.gene060373 | MS.gene06857 | 0.802411 | 5.68E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene06857 | 0.810204 | 1.29E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene06857 | 0.83723 | 5.88E-57 | -1.69E-46 |
| MS.gene06052 | MS.gene06857 | 0.82609 | 3.28E-54 | -1.69E-46 |
| MS.gene060716 | MS.gene06857 | 0.803395 | 3.56E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene06857 | 0.833869 | 4.16E-56 | -1.69E-46 |
| MS.gene060840 | MS.gene06857 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene060850 | MS.gene06857 | 0.805127 | 1.55E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene06857 | 0.815321 | 9.81E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene06857 | 0.811813 | 5.80E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene06857 | 0.822701 | 2.06E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene06857 | 0.840113 | 1.06E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene06857 | 0.881195 | 2.94E-70 | -1.69E-46 |
| MS.gene060937 | MS.gene06857 | 0.877191 | 7.66E-69 | -1.69E-46 |
| MS.gene061100 | MS.gene06857 | 0.804703 | 1.90E-49 | -1.69E-46 |
| MS.gene061135 | MS.gene06857 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene06857 | 0.831322 | 1.78E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06857.t1 | MTR_3g092150 | 97.959 | 245 | 5 | 0 | 1 | 245 | 1 | 245 | 1.27e-180 | 495 |
| MS.gene06857.t1 | MTR_8g026960 | 43.269 | 208 | 110 | 4 | 42 | 245 | 38 | 241 | 2.42e-47 | 157 |
| MS.gene06857.t1 | MTR_6g007647 | 45.185 | 135 | 63 | 2 | 7 | 130 | 25 | 159 | 3.64e-30 | 114 |
| MS.gene06857.t1 | MTR_6g007647 | 57.447 | 94 | 40 | 0 | 37 | 130 | 32 | 125 | 4.78e-30 | 112 |
| MS.gene06857.t1 | MTR_4g107650 | 56.122 | 98 | 43 | 0 | 37 | 134 | 94 | 191 | 4.98e-29 | 112 |
| MS.gene06857.t1 | MTR_6g011610 | 56.383 | 94 | 41 | 0 | 37 | 130 | 95 | 188 | 8.10e-29 | 110 |
| MS.gene06857.t1 | MTR_6g011610 | 56.383 | 94 | 41 | 0 | 37 | 130 | 76 | 169 | 8.20e-29 | 109 |
| MS.gene06857.t1 | MTR_8g468210 | 54.255 | 94 | 43 | 0 | 37 | 130 | 76 | 169 | 4.31e-28 | 108 |
| MS.gene06857.t1 | MTR_1g061660 | 49.533 | 107 | 46 | 2 | 37 | 142 | 58 | 157 | 1.32e-26 | 103 |
| MS.gene06857.t1 | MTR_5g038280 | 55.435 | 92 | 41 | 0 | 39 | 130 | 88 | 179 | 1.92e-26 | 105 |
| MS.gene06857.t1 | MTR_8g089895 | 55.435 | 92 | 41 | 0 | 39 | 130 | 55 | 146 | 2.55e-26 | 104 |
| MS.gene06857.t1 | MTR_5g039000 | 54.255 | 94 | 43 | 0 | 37 | 130 | 76 | 169 | 3.05e-26 | 103 |
| MS.gene06857.t1 | MTR_3g086790 | 51.064 | 94 | 46 | 0 | 37 | 130 | 59 | 152 | 6.48e-26 | 103 |
| MS.gene06857.t1 | MTR_7g103340 | 41.304 | 138 | 67 | 3 | 37 | 160 | 62 | 199 | 4.07e-25 | 99.4 |
| MS.gene06857.t1 | MTR_8g469430 | 54.348 | 92 | 42 | 0 | 39 | 130 | 90 | 181 | 5.54e-25 | 100 |
| MS.gene06857.t1 | MTR_3g080100 | 49.474 | 95 | 48 | 0 | 36 | 130 | 18 | 112 | 6.29e-25 | 98.6 |
| MS.gene06857.t1 | MTR_3g080100 | 49.474 | 95 | 48 | 0 | 36 | 130 | 57 | 151 | 1.04e-24 | 99.0 |
| MS.gene06857.t1 | MTR_7g010020 | 47.826 | 92 | 48 | 0 | 39 | 130 | 81 | 172 | 3.15e-21 | 90.1 |
| MS.gene06857.t1 | MTR_5g019680 | 47.368 | 114 | 46 | 2 | 31 | 130 | 39 | 152 | 5.08e-21 | 87.8 |
| MS.gene06857.t1 | MTR_5g019650 | 52.577 | 97 | 38 | 2 | 31 | 120 | 39 | 134 | 2.00e-19 | 84.0 |
| MS.gene06857.t1 | MTR_4g100550 | 44.211 | 95 | 46 | 1 | 39 | 133 | 121 | 208 | 9.94e-14 | 69.3 |
| MS.gene06857.t1 | MTR_7g093430 | 41.346 | 104 | 48 | 2 | 33 | 133 | 155 | 248 | 1.03e-12 | 66.6 |
| MS.gene06857.t1 | MTR_4g126900 | 42.857 | 84 | 48 | 0 | 41 | 124 | 91 | 174 | 1.90e-12 | 65.1 |
| MS.gene06857.t1 | MTR_4g097600 | 43.158 | 95 | 47 | 1 | 39 | 133 | 128 | 215 | 2.94e-12 | 65.1 |
| MS.gene06857.t1 | MTR_5g014890 | 43.750 | 96 | 53 | 1 | 39 | 133 | 124 | 219 | 5.38e-12 | 64.3 |
| MS.gene06857.t1 | MTR_1g017090 | 43.158 | 95 | 47 | 1 | 39 | 133 | 131 | 218 | 8.48e-12 | 63.9 |
| MS.gene06857.t1 | MTR_1g054285 | 39.423 | 104 | 56 | 1 | 33 | 136 | 149 | 245 | 1.51e-11 | 63.2 |
| MS.gene06857.t1 | MTR_3g103590 | 45.333 | 75 | 41 | 0 | 36 | 110 | 143 | 217 | 1.69e-11 | 63.2 |
| MS.gene06857.t1 | MTR_8g006705 | 42.105 | 95 | 48 | 1 | 39 | 133 | 147 | 234 | 2.10e-11 | 63.2 |
| MS.gene06857.t1 | MTR_7g027265 | 31.250 | 144 | 73 | 4 | 35 | 177 | 17 | 135 | 2.42e-11 | 60.5 |
| MS.gene06857.t1 | MTR_2g061030 | 40.000 | 95 | 50 | 1 | 39 | 133 | 201 | 288 | 7.96e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06857.t1 | AT2G46680 | 41.909 | 241 | 119 | 5 | 25 | 245 | 19 | 258 | 1.13e-44 | 150 |
| MS.gene06857.t1 | AT2G46680 | 42.259 | 239 | 119 | 5 | 25 | 245 | 19 | 256 | 1.43e-43 | 148 |
| MS.gene06857.t1 | AT3G61890 | 68.132 | 91 | 29 | 0 | 41 | 131 | 33 | 123 | 2.11e-38 | 134 |
| MS.gene06857.t1 | AT3G01470 | 40.972 | 144 | 85 | 0 | 37 | 180 | 67 | 210 | 7.27e-30 | 112 |
| MS.gene06857.t1 | AT2G22430 | 56.383 | 94 | 41 | 0 | 37 | 130 | 61 | 154 | 4.62e-29 | 111 |
| MS.gene06857.t1 | AT4G40060 | 52.041 | 98 | 47 | 0 | 37 | 134 | 58 | 155 | 2.16e-28 | 109 |
| MS.gene06857.t1 | AT1G69780 | 54.255 | 94 | 43 | 0 | 37 | 130 | 84 | 177 | 9.39e-28 | 107 |
| MS.gene06857.t1 | AT5G15150 | 53.191 | 94 | 44 | 0 | 37 | 130 | 114 | 207 | 3.82e-26 | 103 |
| MS.gene06857.t1 | AT2G18550 | 50.943 | 106 | 45 | 1 | 39 | 137 | 62 | 167 | 7.28e-26 | 101 |
| MS.gene06857.t1 | AT5G65310 | 51.064 | 94 | 46 | 0 | 37 | 130 | 53 | 146 | 2.98e-25 | 101 |
| MS.gene06857.t1 | AT5G65310 | 51.064 | 94 | 46 | 0 | 37 | 130 | 71 | 164 | 3.89e-25 | 101 |
| MS.gene06857.t1 | AT4G36740 | 42.647 | 136 | 61 | 2 | 17 | 135 | 25 | 160 | 8.86e-25 | 98.2 |
| MS.gene06857.t1 | AT4G36740 | 50.962 | 104 | 44 | 1 | 39 | 135 | 56 | 159 | 1.18e-24 | 97.8 |
| MS.gene06857.t1 | AT5G66700 | 51.000 | 100 | 42 | 1 | 39 | 131 | 72 | 171 | 1.28e-24 | 98.2 |
| MS.gene06857.t1 | AT3G01220 | 48.936 | 94 | 48 | 0 | 37 | 130 | 86 | 179 | 7.79e-24 | 97.4 |
| MS.gene06857.t1 | AT5G03790 | 43.478 | 115 | 54 | 2 | 20 | 134 | 63 | 166 | 1.66e-23 | 95.1 |
| MS.gene06857.t1 | AT1G26960 | 42.969 | 128 | 65 | 2 | 11 | 130 | 36 | 163 | 1.81e-22 | 92.8 |
| MS.gene06857.t1 | AT5G03790 | 46.000 | 100 | 50 | 1 | 20 | 119 | 63 | 158 | 6.99e-22 | 90.1 |
| MS.gene06857.t1 | AT1G27045 | 40.299 | 134 | 74 | 2 | 9 | 138 | 35 | 166 | 4.44e-21 | 89.4 |
| MS.gene06857.t1 | AT1G27045 | 45.361 | 97 | 53 | 0 | 34 | 130 | 21 | 117 | 6.31e-20 | 84.7 |
| MS.gene06857.t1 | AT1G27045 | 45.361 | 97 | 53 | 0 | 34 | 130 | 21 | 117 | 6.31e-20 | 84.7 |
| MS.gene06857.t1 | AT1G27045 | 39.683 | 126 | 72 | 1 | 9 | 130 | 35 | 160 | 7.33e-20 | 85.5 |
| MS.gene06857.t1 | AT1G27045 | 45.361 | 97 | 53 | 0 | 34 | 130 | 13 | 109 | 8.17e-20 | 84.0 |
| MS.gene06857.t1 | AT2G36610 | 42.308 | 104 | 45 | 2 | 39 | 134 | 72 | 168 | 2.55e-19 | 82.8 |
| MS.gene06857.t1 | AT5G53980 | 39.604 | 101 | 57 | 1 | 29 | 129 | 6 | 102 | 1.36e-15 | 72.4 |
| MS.gene06857.t1 | AT2G44910 | 42.000 | 100 | 51 | 1 | 39 | 138 | 164 | 256 | 1.49e-12 | 66.6 |
| MS.gene06857.t1 | AT3G60390 | 42.000 | 100 | 51 | 1 | 39 | 138 | 163 | 255 | 3.81e-12 | 65.1 |
| MS.gene06857.t1 | AT2G22800 | 42.105 | 95 | 48 | 1 | 39 | 133 | 114 | 201 | 1.17e-11 | 63.5 |
| MS.gene06857.t1 | AT5G06710 | 41.837 | 98 | 50 | 1 | 33 | 130 | 185 | 275 | 1.41e-11 | 63.9 |
| MS.gene06857.t1 | AT4G16780 | 42.105 | 95 | 48 | 1 | 39 | 133 | 130 | 217 | 6.08e-11 | 61.6 |
| MS.gene06857.t1 | AT2G01430 | 42.105 | 95 | 48 | 1 | 39 | 133 | 140 | 227 | 8.14e-11 | 61.2 |
| MS.gene06857.t1 | AT4G37790 | 41.053 | 95 | 49 | 1 | 39 | 133 | 127 | 214 | 8.81e-11 | 60.8 |
Find 36 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTAGACAAGTTGCTATA+TGG | 0.329458 | 3.1:-74160849 | MS.gene06857:CDS |
| GCAAGTTGCATCTTCTTCCT+TGG | 0.339735 | 3.1:+74160889 | None:intergenic |
| AGCACAGAAGATGGTGGTTC+AGG | 0.365057 | 3.1:-74160377 | MS.gene06857:CDS |
| GGTTCAGAAGCTAAGTTATA+TGG | 0.367405 | 3.1:-74160441 | MS.gene06857:CDS |
| GAAGATGGTGGTTCAGGAAA+TGG | 0.372815 | 3.1:-74160371 | MS.gene06857:CDS |
| GAAATGGATACAACAATTGC+AGG | 0.379643 | 3.1:-74160355 | MS.gene06857:CDS |
| ATGCAACTTGCAAGAGATCT+TGG | 0.385707 | 3.1:-74160877 | MS.gene06857:CDS |
| TTCTAAGTTTCAGTGCCTTA+AGG | 0.396105 | 3.1:-74160743 | MS.gene06857:CDS |
| AAGACTCTTTCTCTTCCTTA+AGG | 0.407960 | 3.1:+74160728 | None:intergenic |
| TGATGAACAGATAAGATCAT+TGG | 0.455417 | 3.1:-74160944 | MS.gene06857:CDS |
| ATGCAATAGTTCTCAATGGT+TGG | 0.475551 | 3.1:-74160117 | MS.gene06857:CDS |
| AATATTCATGAAGGGTTCAA+AGG | 0.493550 | 3.1:-74161054 | MS.gene06857:CDS |
| GAAGAAGAGAATATTCATGA+AGG | 0.503417 | 3.1:-74161063 | MS.gene06857:CDS |
| CAGAATCAAAGTTGGAGCCA+AGG | 0.518559 | 3.1:-74160906 | MS.gene06857:CDS |
| ATTTGAGTCAGAATCAAAGT+TGG | 0.518777 | 3.1:-74160914 | MS.gene06857:CDS |
| AAGGAAAATAGCACAGAAGA+TGG | 0.540540 | 3.1:-74160386 | MS.gene06857:CDS |
| GAAAGAGTCTTTGCAATCAG+AGG | 0.541327 | 3.1:-74160716 | MS.gene06857:intron |
| AATCATGCAATAGTTCTCAA+TGG | 0.553811 | 3.1:-74160121 | MS.gene06857:CDS |
| AGAAGATAGAAAACAAGAGA+AGG | 0.569555 | 3.1:-74160972 | MS.gene06857:CDS |
| AAACATCGCATGATGGAGGA+AGG | 0.574577 | 3.1:-74160415 | MS.gene06857:CDS |
| AACCATATAGCAACTTGTCT+AGG | 0.580258 | 3.1:+74160847 | None:intergenic |
| AAGAAGAGAATATTCATGAA+GGG | 0.590509 | 3.1:-74161062 | MS.gene06857:CDS |
| TTCAGAACAGAAGAGCAAGA+TGG | 0.602218 | 3.1:-74160825 | MS.gene06857:CDS |
| TGATGGAGGAAGGGAAGCTA+AGG | 0.606332 | 3.1:-74160405 | MS.gene06857:CDS |
| TCAGAAGCTAAGTTATATGG+TGG | 0.615960 | 3.1:-74160438 | MS.gene06857:CDS |
| ATGGTGGAAACATCGCATGA+TGG | 0.617224 | 3.1:-74160422 | MS.gene06857:CDS |
| AACATCGCATGATGGAGGAA+GGG | 0.628539 | 3.1:-74160414 | MS.gene06857:CDS |
| GTGGAAACATCGCATGATGG+AGG | 0.645127 | 3.1:-74160419 | MS.gene06857:CDS |
| GGCCATATATAATATGATGG+AGG | 0.645919 | 3.1:-74161085 | None:intergenic |
| GAGCAAGATGGAAATCAAAG+AGG | 0.650346 | 3.1:-74160813 | MS.gene06857:CDS |
| GATTGATCTAACATACCACA+TGG | 0.663576 | 3.1:+74160140 | None:intergenic |
| GAAAATAGCACAGAAGATGG+TGG | 0.663671 | 3.1:-74160383 | MS.gene06857:CDS |
| AAAATGAAAGAAGCACAACA+TGG | 0.668449 | 3.1:-74160262 | MS.gene06857:CDS |
| ACAGAGAAAATTGAGGACAG+AGG | 0.671559 | 3.1:-74160239 | MS.gene06857:CDS |
| AACATGGACAGAGAAAATTG+AGG | 0.710156 | 3.1:-74160246 | MS.gene06857:CDS |
| TGGTACAATGTTGATCCATG+TGG | 0.723453 | 3.1:-74160155 | MS.gene06857:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGAAGAGAATATTCATGAA+GGG | - | chr3.1:74160113-74160132 | MS.gene06857:CDS | 25.0% |
| !! | AAAGCAAAGATTTTCAAATG+AGG | - | chr3.1:74160854-74160873 | MS.gene06857:CDS | 25.0% |
| !! | AAGCAAAGATTTTCAAATGA+GGG | - | chr3.1:74160855-74160874 | MS.gene06857:CDS | 25.0% |
| !! | TTTTTCTTCTTTGAATTCTG+AGG | + | chr3.1:74160181-74160200 | None:intergenic | 25.0% |
| AAGTTAATGTCGAGTCTATA+AGG | + | chr3.1:74160689-74160708 | None:intergenic | 30.0% | |
| AATATTCATGAAGGGTTCAA+AGG | - | chr3.1:74160121-74160140 | MS.gene06857:CDS | 30.0% | |
| AATCATGCAATAGTTCTCAA+TGG | - | chr3.1:74161054-74161073 | MS.gene06857:CDS | 30.0% | |
| ACATACTCAAGCTTAGTATT+AGG | - | chr3.1:74160634-74160653 | MS.gene06857:intron | 30.0% | |
| AGAAGATAGAAAACAAGAGA+AGG | - | chr3.1:74160203-74160222 | MS.gene06857:CDS | 30.0% | |
| ATTTGAGTCAGAATCAAAGT+TGG | - | chr3.1:74160261-74160280 | MS.gene06857:CDS | 30.0% | |
| GAAGAAGAGAATATTCATGA+AGG | - | chr3.1:74160112-74160131 | MS.gene06857:CDS | 30.0% | |
| TGACAACAACACTTGAAAAA+TGG | - | chr3.1:74161000-74161019 | MS.gene06857:CDS | 30.0% | |
| TGATGAACAGATAAGATCAT+TGG | - | chr3.1:74160231-74160250 | MS.gene06857:CDS | 30.0% | |
| TGTTAGGAAACAAATTCACA+CGG | + | chr3.1:74160714-74160733 | None:intergenic | 30.0% | |
| ! | AAAATGAAAGAAGCACAACA+TGG | - | chr3.1:74160913-74160932 | MS.gene06857:CDS | 30.0% |
| ! | AAGATTTTCAAATGAGGGTT+TGG | - | chr3.1:74160860-74160879 | MS.gene06857:CDS | 30.0% |
| !!! | TTTTCAAGTGTTGTTGTCAA+GGG | + | chr3.1:74160999-74161018 | None:intergenic | 30.0% |
| !!! | TTTTTCAAGTGTTGTTGTCA+AGG | + | chr3.1:74161000-74161019 | None:intergenic | 30.0% |
| AACATGGACAGAGAAAATTG+AGG | - | chr3.1:74160929-74160948 | MS.gene06857:CDS | 35.0% | |
| AACCATATAGCAACTTGTCT+AGG | + | chr3.1:74160331-74160350 | None:intergenic | 35.0% | |
| AAGACTCTTTCTCTTCCTTA+AGG | + | chr3.1:74160450-74160469 | None:intergenic | 35.0% | |
| AAGGAAAATAGCACAGAAGA+TGG | - | chr3.1:74160789-74160808 | MS.gene06857:CDS | 35.0% | |
| ATGCAATAGTTCTCAATGGT+TGG | - | chr3.1:74161058-74161077 | MS.gene06857:CDS | 35.0% | |
| GAAATGGATACAACAATTGC+AGG | - | chr3.1:74160820-74160839 | MS.gene06857:CDS | 35.0% | |
| GATTGATCTAACATACCACA+TGG | + | chr3.1:74161038-74161057 | None:intergenic | 35.0% | |
| GGCTCGATTAATTAAATGAG+TGG | - | chr3.1:74160655-74160674 | MS.gene06857:intron | 35.0% | |
| GGTTCAGAAGCTAAGTTATA+TGG | - | chr3.1:74160734-74160753 | MS.gene06857:CDS | 35.0% | |
| TCAGAAGCTAAGTTATATGG+TGG | - | chr3.1:74160737-74160756 | MS.gene06857:CDS | 35.0% | |
| TCAGAGGTAAGTTAGTAGTT+TGG | - | chr3.1:74160475-74160494 | MS.gene06857:intron | 35.0% | |
| TTCTAAGTTTCAGTGCCTTA+AGG | - | chr3.1:74160432-74160451 | MS.gene06857:CDS | 35.0% | |
| ! | ATTTTCAAATGAGGGTTTGG+AGG | - | chr3.1:74160863-74160882 | MS.gene06857:CDS | 35.0% |
| ! | GTGTGAATTTGTTTCCTAAC+AGG | - | chr3.1:74160713-74160732 | MS.gene06857:intron | 35.0% |
| ! | GTTCTCAATGGTTGGATTTT+TGG | - | chr3.1:74161066-74161085 | MS.gene06857:CDS | 35.0% |
| ACAGAGAAAATTGAGGACAG+AGG | - | chr3.1:74160936-74160955 | MS.gene06857:CDS | 40.0% | |
| ACTTAGCTTCTGAACCTGTT+AGG | + | chr3.1:74160730-74160749 | None:intergenic | 40.0% | |
| AGCCTAGACAAGTTGCTATA+TGG | - | chr3.1:74160326-74160345 | MS.gene06857:CDS | 40.0% | |
| ATGCAACTTGCAAGAGATCT+TGG | - | chr3.1:74160298-74160317 | MS.gene06857:CDS | 40.0% | |
| GAAAATAGCACAGAAGATGG+TGG | - | chr3.1:74160792-74160811 | MS.gene06857:CDS | 40.0% | |
| GAAAGAGTCTTTGCAATCAG+AGG | - | chr3.1:74160459-74160478 | MS.gene06857:intron | 40.0% | |
| GACTCAGCTCGTTAAATACT+CGG | - | chr3.1:74160585-74160604 | MS.gene06857:intron | 40.0% | |
| GAGCAAGATGGAAATCAAAG+AGG | - | chr3.1:74160362-74160381 | MS.gene06857:CDS | 40.0% | |
| TGGTACAATGTTGATCCATG+TGG | - | chr3.1:74161020-74161039 | MS.gene06857:CDS | 40.0% | |
| TTCAGAACAGAAGAGCAAGA+TGG | - | chr3.1:74160350-74160369 | MS.gene06857:CDS | 40.0% | |
| CAGAATCAAAGTTGGAGCCA+AGG | - | chr3.1:74160269-74160288 | MS.gene06857:CDS | 45.0% | |
| GCAAGTTGCATCTTCTTCCT+TGG | + | chr3.1:74160289-74160308 | None:intergenic | 45.0% | |
| ! | AAACATCGCATGATGGAGGA+AGG | - | chr3.1:74160760-74160779 | MS.gene06857:CDS | 45.0% |
| ! | AACATCGCATGATGGAGGAA+GGG | - | chr3.1:74160761-74160780 | MS.gene06857:CDS | 45.0% |
| ! | ATGGTGGAAACATCGCATGA+TGG | - | chr3.1:74160753-74160772 | MS.gene06857:CDS | 45.0% |
| ! | GAAGATGGTGGTTCAGGAAA+TGG | - | chr3.1:74160804-74160823 | MS.gene06857:CDS | 45.0% |
| GTGGAAACATCGCATGATGG+AGG | - | chr3.1:74160756-74160775 | MS.gene06857:CDS | 50.0% | |
| TGATGGAGGAAGGGAAGCTA+AGG | - | chr3.1:74160770-74160789 | MS.gene06857:CDS | 50.0% | |
| ! | AGCACAGAAGATGGTGGTTC+AGG | - | chr3.1:74160798-74160817 | MS.gene06857:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 74160103 | 74161094 | 74160103 | ID=MS.gene06857 |
| chr3.1 | mRNA | 74160103 | 74161094 | 74160103 | ID=MS.gene06857.t1;Parent=MS.gene06857 |
| chr3.1 | exon | 74160717 | 74161094 | 74160717 | ID=MS.gene06857.t1.exon1;Parent=MS.gene06857.t1 |
| chr3.1 | CDS | 74160717 | 74161094 | 74160717 | ID=cds.MS.gene06857.t1;Parent=MS.gene06857.t1 |
| chr3.1 | exon | 74160103 | 74160462 | 74160103 | ID=MS.gene06857.t1.exon2;Parent=MS.gene06857.t1 |
| chr3.1 | CDS | 74160103 | 74160462 | 74160103 | ID=cds.MS.gene06857.t1;Parent=MS.gene06857.t1 |
| Gene Sequence |
| Protein sequence |
