Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06643.t1 | XP_003602321.2 | 95.4 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 3.50E-94 | 354.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06643.t1 | Q9M276 | 76.2 | 63 | 15 | 0 | 29 | 91 | 21 | 83 | 8.4e-20 | 99.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06643.t1 | G7J874 | 95.4 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 2.5e-94 | 354.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06643.t1 | TF | HB-HD-ZIP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene06643 | 0.831803 | 1.36E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene06643 | 0.825893 | 3.66E-54 | -1.69E-46 |
| MS.gene04918 | MS.gene06643 | 0.823413 | 1.40E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene06643 | 0.816329 | 5.85E-52 | -1.69E-46 |
| MS.gene049254 | MS.gene06643 | 0.871571 | 6.18E-67 | -1.69E-46 |
| MS.gene049283 | MS.gene06643 | 0.850252 | 1.91E-60 | -1.69E-46 |
| MS.gene049343 | MS.gene06643 | 0.85819 | 9.76E-63 | -1.69E-46 |
| MS.gene049368 | MS.gene06643 | 0.833753 | 4.45E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene06643 | 0.819352 | 1.21E-52 | -1.69E-46 |
| MS.gene049419 | MS.gene06643 | -0.829666 | 4.53E-55 | -1.69E-46 |
| MS.gene049452 | MS.gene06643 | 0.845005 | 5.32E-59 | -1.69E-46 |
| MS.gene049499 | MS.gene06643 | 0.837357 | 5.45E-57 | -1.69E-46 |
| MS.gene049983 | MS.gene06643 | 0.854321 | 1.33E-61 | -1.69E-46 |
| MS.gene050073 | MS.gene06643 | 0.805248 | 1.46E-49 | -1.69E-46 |
| MS.gene050105 | MS.gene06643 | 0.81788 | 2.62E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene06643 | 0.855873 | 4.71E-62 | -1.69E-46 |
| MS.gene050561 | MS.gene06643 | 0.851379 | 9.22E-61 | -1.69E-46 |
| MS.gene050562 | MS.gene06643 | 0.839653 | 1.39E-57 | -1.69E-46 |
| MS.gene050646 | MS.gene06643 | 0.805653 | 1.20E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene06643 | 0.820925 | 5.30E-53 | -1.69E-46 |
| MS.gene050759 | MS.gene06643 | 0.827619 | 1.42E-54 | -1.69E-46 |
| MS.gene050905 | MS.gene06643 | -0.803295 | 3.73E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene06643 | 0.804924 | 1.71E-49 | -1.69E-46 |
| MS.gene050962 | MS.gene06643 | 0.823133 | 1.63E-53 | -1.69E-46 |
| MS.gene051181 | MS.gene06643 | 0.83944 | 1.58E-57 | -1.69E-46 |
| MS.gene051198 | MS.gene06643 | 0.815843 | 7.51E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene06643 | 0.831478 | 1.63E-55 | -1.69E-46 |
| MS.gene051332 | MS.gene06643 | 0.836945 | 6.95E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene06643 | 0.810635 | 1.05E-50 | -1.69E-46 |
| MS.gene051363 | MS.gene06643 | 0.825072 | 5.72E-54 | -1.69E-46 |
| MS.gene051365 | MS.gene06643 | 0.803231 | 3.85E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene06643 | 0.844959 | 5.47E-59 | -1.69E-46 |
| MS.gene051597 | MS.gene06643 | 0.827016 | 1.97E-54 | -1.69E-46 |
| MS.gene051676 | MS.gene06643 | 0.805441 | 1.33E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene06643 | 0.843015 | 1.82E-58 | -1.69E-46 |
| MS.gene051975 | MS.gene06643 | 0.832315 | 1.01E-55 | -1.69E-46 |
| MS.gene052108 | MS.gene06643 | 0.858177 | 9.85E-63 | -1.69E-46 |
| MS.gene052118 | MS.gene06643 | 0.805791 | 1.13E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene06643 | 0.82015 | 7.99E-53 | -1.69E-46 |
| MS.gene052500 | MS.gene06643 | 0.837835 | 4.11E-57 | -1.69E-46 |
| MS.gene052502 | MS.gene06643 | 0.829741 | 4.34E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene06643 | 0.807796 | 4.24E-50 | -1.69E-46 |
| MS.gene052518 | MS.gene06643 | 0.819781 | 9.70E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene06643 | 0.862298 | 5.59E-64 | -1.69E-46 |
| MS.gene052534 | MS.gene06643 | 0.826253 | 3.00E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene06643 | 0.833066 | 6.60E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene06643 | 0.843296 | 1.53E-58 | -1.69E-46 |
| MS.gene052674 | MS.gene06643 | 0.813116 | 3.01E-51 | -1.69E-46 |
| MS.gene052675 | MS.gene06643 | 0.818252 | 2.16E-52 | -1.69E-46 |
| MS.gene052677 | MS.gene06643 | 0.815604 | 8.49E-52 | -1.69E-46 |
| MS.gene052685 | MS.gene06643 | 0.808288 | 3.33E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene06643 | 0.832678 | 8.24E-56 | -1.69E-46 |
| MS.gene052826 | MS.gene06643 | 0.833633 | 4.77E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene06643 | 0.810112 | 1.35E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene06643 | 0.857964 | 1.14E-62 | -1.69E-46 |
| MS.gene053006 | MS.gene06643 | 0.849834 | 2.51E-60 | -1.69E-46 |
| MS.gene053008 | MS.gene06643 | 0.81321 | 2.87E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene06643 | 0.810398 | 1.18E-50 | -1.69E-46 |
| MS.gene05308 | MS.gene06643 | 0.8382 | 3.31E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene06643 | 0.849718 | 2.70E-60 | -1.69E-46 |
| MS.gene053272 | MS.gene06643 | -0.820941 | 5.26E-53 | -1.69E-46 |
| MS.gene053296 | MS.gene06643 | 0.807332 | 5.32E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene06643 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene053321 | MS.gene06643 | 0.821443 | 4.03E-53 | -1.69E-46 |
| MS.gene05350 | MS.gene06643 | 0.820378 | 7.08E-53 | -1.69E-46 |
| MS.gene05364 | MS.gene06643 | 0.840843 | 6.81E-58 | -1.69E-46 |
| MS.gene053931 | MS.gene06643 | 0.867882 | 9.86E-66 | -1.69E-46 |
| MS.gene053963 | MS.gene06643 | 0.81286 | 3.43E-51 | -1.69E-46 |
| MS.gene053995 | MS.gene06643 | 0.803869 | 2.84E-49 | -1.69E-46 |
| MS.gene054142 | MS.gene06643 | 0.826415 | 2.75E-54 | -1.69E-46 |
| MS.gene05414 | MS.gene06643 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene06643 | 0.83921 | 1.82E-57 | -1.69E-46 |
| MS.gene054236 | MS.gene06643 | 0.811733 | 6.04E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene06643 | 0.813085 | 3.06E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene06643 | 0.842577 | 2.37E-58 | -1.69E-46 |
| MS.gene054576 | MS.gene06643 | 0.806942 | 6.44E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene06643 | 0.837492 | 5.04E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene06643 | 0.867177 | 1.66E-65 | -1.69E-46 |
| MS.gene054657 | MS.gene06643 | 0.839211 | 1.81E-57 | -1.69E-46 |
| MS.gene054720 | MS.gene06643 | 0.80176 | 7.73E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene06643 | 0.819684 | 1.02E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene06643 | 0.833986 | 3.89E-56 | -1.69E-46 |
| MS.gene054893 | MS.gene06643 | 0.837121 | 6.27E-57 | -1.69E-46 |
| MS.gene054957 | MS.gene06643 | 0.814142 | 1.79E-51 | -1.69E-46 |
| MS.gene054994 | MS.gene06643 | 0.820447 | 6.83E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene06643 | 0.807232 | 5.59E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene06643 | 0.843512 | 1.34E-58 | -1.69E-46 |
| MS.gene055222 | MS.gene06643 | 0.831057 | 2.07E-55 | -1.69E-46 |
| MS.gene055228 | MS.gene06643 | 0.821425 | 4.07E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene06643 | 0.82525 | 5.19E-54 | -1.69E-46 |
| MS.gene055586 | MS.gene06643 | 0.831068 | 2.06E-55 | -1.69E-46 |
| MS.gene055589 | MS.gene06643 | 0.81527 | 1.01E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene06643 | 0.832366 | 9.85E-56 | -1.69E-46 |
| MS.gene055701 | MS.gene06643 | 0.805543 | 1.27E-49 | -1.69E-46 |
| MS.gene055724 | MS.gene06643 | 0.820725 | 5.89E-53 | -1.69E-46 |
| MS.gene055818 | MS.gene06643 | 0.846801 | 1.73E-59 | -1.69E-46 |
| MS.gene055841 | MS.gene06643 | 0.882585 | 9.21E-71 | -1.69E-46 |
| MS.gene055926 | MS.gene06643 | 0.817882 | 2.62E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene06643 | 0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene056050 | MS.gene06643 | 0.807559 | 4.76E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene06643 | 0.833298 | 5.78E-56 | -1.69E-46 |
| MS.gene056174 | MS.gene06643 | 0.834636 | 2.67E-56 | -1.69E-46 |
| MS.gene056215 | MS.gene06643 | 0.805906 | 1.06E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene06643 | 0.800857 | 1.18E-48 | -1.69E-46 |
| MS.gene056363 | MS.gene06643 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene06643 | 0.837145 | 6.18E-57 | -1.69E-46 |
| MS.gene056480 | MS.gene06643 | 0.800845 | 1.19E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene06643 | 0.821172 | 4.65E-53 | -1.69E-46 |
| MS.gene056595 | MS.gene06643 | 0.830126 | 3.50E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene06643 | 0.850857 | 1.29E-60 | -1.69E-46 |
| MS.gene056776 | MS.gene06643 | 0.841647 | 4.18E-58 | -1.69E-46 |
| MS.gene056834 | MS.gene06643 | 0.835732 | 1.41E-56 | -1.69E-46 |
| MS.gene05686 | MS.gene06643 | 0.851454 | 8.78E-61 | -1.69E-46 |
| MS.gene05690 | MS.gene06643 | 0.839188 | 1.84E-57 | -1.69E-46 |
| MS.gene056973 | MS.gene06643 | 0.818118 | 2.32E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene06643 | 0.815491 | 9.00E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene06643 | 0.802902 | 4.50E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene06643 | 0.833536 | 5.04E-56 | -1.69E-46 |
| MS.gene057060 | MS.gene06643 | 0.804344 | 2.26E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene06643 | 0.834369 | 3.12E-56 | -1.69E-46 |
| MS.gene057155 | MS.gene06643 | 0.825676 | 4.12E-54 | -1.69E-46 |
| MS.gene057208 | MS.gene06643 | 0.995894 | 4.59E-221 | -1.69E-46 |
| MS.gene057371 | MS.gene06643 | 0.832454 | 9.37E-56 | -1.69E-46 |
| MS.gene057392 | MS.gene06643 | 0.822473 | 2.32E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene06643 | 0.811329 | 7.39E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene06643 | 0.830067 | 3.62E-55 | -1.69E-46 |
| MS.gene057611 | MS.gene06643 | 0.823659 | 1.23E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene06643 | 0.835216 | 1.91E-56 | -1.69E-46 |
| MS.gene057855 | MS.gene06643 | 0.842312 | 2.79E-58 | -1.69E-46 |
| MS.gene058008 | MS.gene06643 | 0.857419 | 1.65E-62 | -1.69E-46 |
| MS.gene058009 | MS.gene06643 | 0.849126 | 3.95E-60 | -1.69E-46 |
| MS.gene058010 | MS.gene06643 | 0.821826 | 3.29E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene06643 | 0.820113 | 8.14E-53 | -1.69E-46 |
| MS.gene058159 | MS.gene06643 | 0.802362 | 5.82E-49 | -1.69E-46 |
| MS.gene058279 | MS.gene06643 | 0.821114 | 4.80E-53 | -1.69E-46 |
| MS.gene058292 | MS.gene06643 | 0.806744 | 7.09E-50 | -1.69E-46 |
| MS.gene058355 | MS.gene06643 | 0.819221 | 1.30E-52 | -1.69E-46 |
| MS.gene058427 | MS.gene06643 | 0.811554 | 6.60E-51 | -1.69E-46 |
| MS.gene05847 | MS.gene06643 | 0.802457 | 5.56E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene06643 | 0.810237 | 1.27E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene06643 | 0.823148 | 1.62E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene06643 | 0.829385 | 5.30E-55 | -1.69E-46 |
| MS.gene058769 | MS.gene06643 | 0.83564 | 1.49E-56 | -1.69E-46 |
| MS.gene058781 | MS.gene06643 | 0.850351 | 1.80E-60 | -1.69E-46 |
| MS.gene058783 | MS.gene06643 | 0.864281 | 1.36E-64 | -1.69E-46 |
| MS.gene058979 | MS.gene06643 | 0.859115 | 5.17E-63 | -1.69E-46 |
| MS.gene059146 | MS.gene06643 | 0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene059438 | MS.gene06643 | 0.805185 | 1.51E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene06643 | 0.806472 | 8.09E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene06643 | 0.818997 | 1.46E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene06643 | 0.815831 | 7.56E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene06643 | 0.826194 | 3.10E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene06643 | -0.851381 | 9.21E-61 | -1.69E-46 |
| MS.gene059935 | MS.gene06643 | 0.811285 | 7.56E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene06643 | 0.805478 | 1.31E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene06643 | 0.863719 | 2.04E-64 | -1.69E-46 |
| MS.gene060259 | MS.gene06643 | 0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene06643 | 0.819816 | 9.52E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene06643 | 0.820494 | 6.66E-53 | -1.69E-46 |
| MS.gene060365 | MS.gene06643 | 0.847779 | 9.32E-60 | -1.69E-46 |
| MS.gene060435 | MS.gene06643 | 0.804911 | 1.72E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene06643 | 0.803797 | 2.94E-49 | -1.69E-46 |
| MS.gene060527 | MS.gene06643 | 0.831868 | 1.31E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene06643 | 0.808635 | 2.81E-50 | -1.69E-46 |
| MS.gene060777 | MS.gene06643 | 0.827098 | 1.89E-54 | -1.69E-46 |
| MS.gene060932 | MS.gene06643 | 0.803153 | 3.99E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene06643 | 0.825078 | 5.70E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene06643 | 0.892357 | 1.71E-74 | -1.69E-46 |
| MS.gene060937 | MS.gene06643 | 0.884126 | 2.50E-71 | -1.69E-46 |
| MS.gene061100 | MS.gene06643 | 0.803435 | 3.49E-49 | -1.69E-46 |
| MS.gene061135 | MS.gene06643 | 0.80891 | 2.46E-50 | -1.69E-46 |
| MS.gene061188 | MS.gene06643 | 0.831065 | 2.06E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06643.t1 | MTR_3g092150 | 95.378 | 238 | 11 | 0 | 1 | 238 | 1 | 238 | 4.36e-158 | 439 |
| MS.gene06643.t1 | MTR_8g026960 | 44.865 | 185 | 94 | 4 | 42 | 222 | 38 | 218 | 6.60e-42 | 144 |
| MS.gene06643.t1 | MTR_6g007647 | 45.185 | 135 | 63 | 2 | 7 | 130 | 25 | 159 | 5.20e-30 | 114 |
| MS.gene06643.t1 | MTR_6g007647 | 57.447 | 94 | 40 | 0 | 37 | 130 | 32 | 125 | 6.13e-30 | 113 |
| MS.gene06643.t1 | MTR_4g107650 | 56.122 | 98 | 43 | 0 | 37 | 134 | 94 | 191 | 6.21e-29 | 112 |
| MS.gene06643.t1 | MTR_6g011610 | 56.383 | 94 | 41 | 0 | 37 | 130 | 76 | 169 | 1.86e-28 | 109 |
| MS.gene06643.t1 | MTR_6g011610 | 56.383 | 94 | 41 | 0 | 37 | 130 | 95 | 188 | 1.88e-28 | 109 |
| MS.gene06643.t1 | MTR_8g468210 | 54.255 | 94 | 43 | 0 | 37 | 130 | 76 | 169 | 7.11e-28 | 108 |
| MS.gene06643.t1 | MTR_1g061660 | 49.533 | 107 | 46 | 2 | 37 | 142 | 58 | 157 | 2.34e-26 | 103 |
| MS.gene06643.t1 | MTR_5g038280 | 55.435 | 92 | 41 | 0 | 39 | 130 | 88 | 179 | 2.85e-26 | 104 |
| MS.gene06643.t1 | MTR_8g089895 | 55.435 | 92 | 41 | 0 | 39 | 130 | 55 | 146 | 4.02e-26 | 104 |
| MS.gene06643.t1 | MTR_5g039000 | 54.255 | 94 | 43 | 0 | 37 | 130 | 76 | 169 | 5.11e-26 | 103 |
| MS.gene06643.t1 | MTR_3g086790 | 51.064 | 94 | 46 | 0 | 37 | 130 | 59 | 152 | 1.36e-25 | 102 |
| MS.gene06643.t1 | MTR_7g103340 | 40.690 | 145 | 58 | 4 | 37 | 160 | 62 | 199 | 4.88e-25 | 99.8 |
| MS.gene06643.t1 | MTR_8g469430 | 54.348 | 92 | 42 | 0 | 39 | 130 | 90 | 181 | 9.30e-25 | 100 |
| MS.gene06643.t1 | MTR_3g080100 | 49.474 | 95 | 48 | 0 | 36 | 130 | 18 | 112 | 1.03e-24 | 98.2 |
| MS.gene06643.t1 | MTR_3g080100 | 49.474 | 95 | 48 | 0 | 36 | 130 | 57 | 151 | 1.61e-24 | 99.0 |
| MS.gene06643.t1 | MTR_7g010020 | 47.826 | 92 | 48 | 0 | 39 | 130 | 81 | 172 | 8.24e-21 | 89.4 |
| MS.gene06643.t1 | MTR_5g019680 | 47.368 | 114 | 46 | 2 | 31 | 130 | 39 | 152 | 1.06e-20 | 87.4 |
| MS.gene06643.t1 | MTR_5g019650 | 52.577 | 97 | 38 | 2 | 31 | 120 | 39 | 134 | 2.12e-19 | 84.3 |
| MS.gene06643.t1 | MTR_4g100550 | 45.652 | 92 | 43 | 1 | 39 | 130 | 121 | 205 | 1.48e-13 | 69.3 |
| MS.gene06643.t1 | MTR_7g093430 | 42.857 | 98 | 49 | 1 | 33 | 130 | 155 | 245 | 1.47e-12 | 66.6 |
| MS.gene06643.t1 | MTR_4g126900 | 42.857 | 84 | 48 | 0 | 41 | 124 | 91 | 174 | 2.24e-12 | 65.1 |
| MS.gene06643.t1 | MTR_4g097600 | 43.158 | 95 | 47 | 1 | 39 | 133 | 128 | 215 | 4.01e-12 | 65.1 |
| MS.gene06643.t1 | MTR_5g014890 | 43.750 | 96 | 53 | 1 | 39 | 133 | 124 | 219 | 7.44e-12 | 64.3 |
| MS.gene06643.t1 | MTR_1g017090 | 43.158 | 95 | 47 | 1 | 39 | 133 | 131 | 218 | 1.25e-11 | 63.9 |
| MS.gene06643.t1 | MTR_3g103590 | 45.333 | 75 | 41 | 0 | 36 | 110 | 143 | 217 | 1.91e-11 | 63.5 |
| MS.gene06643.t1 | MTR_1g054285 | 39.423 | 104 | 56 | 1 | 33 | 136 | 149 | 245 | 2.66e-11 | 62.8 |
| MS.gene06643.t1 | MTR_7g027265 | 31.250 | 144 | 73 | 4 | 35 | 177 | 17 | 135 | 2.68e-11 | 60.5 |
| MS.gene06643.t1 | MTR_8g006705 | 43.478 | 92 | 45 | 1 | 39 | 130 | 147 | 231 | 2.95e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06643.t1 | AT2G46680 | 69.307 | 101 | 31 | 0 | 30 | 130 | 24 | 124 | 9.76e-43 | 146 |
| MS.gene06643.t1 | AT2G46680 | 70.103 | 97 | 29 | 0 | 30 | 126 | 24 | 120 | 7.47e-41 | 141 |
| MS.gene06643.t1 | AT3G61890 | 68.132 | 91 | 29 | 0 | 41 | 131 | 33 | 123 | 2.33e-38 | 134 |
| MS.gene06643.t1 | AT3G01470 | 43.382 | 136 | 77 | 0 | 37 | 172 | 67 | 202 | 1.88e-29 | 112 |
| MS.gene06643.t1 | AT2G22430 | 56.383 | 94 | 41 | 0 | 37 | 130 | 61 | 154 | 7.00e-29 | 111 |
| MS.gene06643.t1 | AT4G40060 | 50.485 | 103 | 51 | 0 | 37 | 139 | 58 | 160 | 5.08e-28 | 108 |
| MS.gene06643.t1 | AT1G69780 | 54.255 | 94 | 43 | 0 | 37 | 130 | 84 | 177 | 1.79e-27 | 107 |
| MS.gene06643.t1 | AT5G15150 | 53.191 | 94 | 44 | 0 | 37 | 130 | 114 | 207 | 6.76e-26 | 103 |
| MS.gene06643.t1 | AT2G18550 | 50.943 | 106 | 45 | 1 | 39 | 137 | 62 | 167 | 1.21e-25 | 100 |
| MS.gene06643.t1 | AT5G65310 | 51.064 | 94 | 46 | 0 | 37 | 130 | 53 | 146 | 5.38e-25 | 100 |
| MS.gene06643.t1 | AT5G65310 | 51.064 | 94 | 46 | 0 | 37 | 130 | 71 | 164 | 5.91e-25 | 101 |
| MS.gene06643.t1 | AT4G36740 | 50.962 | 104 | 44 | 1 | 39 | 135 | 57 | 160 | 1.49e-24 | 98.2 |
| MS.gene06643.t1 | AT4G36740 | 50.962 | 104 | 44 | 1 | 39 | 135 | 56 | 159 | 1.86e-24 | 97.8 |
| MS.gene06643.t1 | AT5G66700 | 51.000 | 100 | 42 | 1 | 39 | 131 | 72 | 171 | 2.32e-24 | 97.8 |
| MS.gene06643.t1 | AT3G01220 | 48.936 | 94 | 48 | 0 | 37 | 130 | 86 | 179 | 1.80e-23 | 96.7 |
| MS.gene06643.t1 | AT5G03790 | 45.045 | 111 | 50 | 2 | 20 | 130 | 63 | 162 | 2.89e-23 | 95.1 |
| MS.gene06643.t1 | AT1G26960 | 42.969 | 128 | 65 | 2 | 11 | 130 | 36 | 163 | 4.47e-22 | 92.4 |
| MS.gene06643.t1 | AT5G03790 | 46.000 | 100 | 50 | 1 | 20 | 119 | 63 | 158 | 1.03e-21 | 89.7 |
| MS.gene06643.t1 | AT1G27045 | 40.299 | 134 | 74 | 2 | 9 | 138 | 35 | 166 | 4.90e-21 | 89.4 |
| MS.gene06643.t1 | AT1G27045 | 45.361 | 97 | 53 | 0 | 34 | 130 | 21 | 117 | 5.71e-20 | 85.1 |
| MS.gene06643.t1 | AT1G27045 | 45.361 | 97 | 53 | 0 | 34 | 130 | 21 | 117 | 5.71e-20 | 85.1 |
| MS.gene06643.t1 | AT1G27045 | 39.683 | 126 | 72 | 1 | 9 | 130 | 35 | 160 | 6.16e-20 | 85.9 |
| MS.gene06643.t1 | AT1G27045 | 45.361 | 97 | 53 | 0 | 34 | 130 | 13 | 109 | 6.64e-20 | 84.7 |
| MS.gene06643.t1 | AT2G36610 | 42.308 | 104 | 45 | 2 | 39 | 134 | 72 | 168 | 3.30e-19 | 83.2 |
| MS.gene06643.t1 | AT5G53980 | 39.604 | 101 | 57 | 1 | 29 | 129 | 6 | 102 | 2.76e-15 | 71.6 |
| MS.gene06643.t1 | AT2G44910 | 42.000 | 100 | 51 | 1 | 39 | 138 | 164 | 256 | 2.19e-12 | 66.2 |
| MS.gene06643.t1 | AT3G60390 | 42.000 | 100 | 51 | 1 | 39 | 138 | 163 | 255 | 6.08e-12 | 65.1 |
| MS.gene06643.t1 | AT2G22800 | 42.105 | 95 | 48 | 1 | 39 | 133 | 114 | 201 | 1.40e-11 | 63.5 |
| MS.gene06643.t1 | AT5G06710 | 41.837 | 98 | 50 | 1 | 33 | 130 | 185 | 275 | 2.06e-11 | 63.5 |
| MS.gene06643.t1 | AT4G16780 | 42.105 | 95 | 48 | 1 | 39 | 133 | 130 | 217 | 8.95e-11 | 61.2 |
| MS.gene06643.t1 | AT4G37790 | 41.053 | 95 | 49 | 1 | 39 | 133 | 127 | 214 | 9.09e-11 | 61.2 |
Find 35 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATTCATGAAGGGTTTAA+AGG | 0.209558 | 3.3:-76937648 | MS.gene06643:CDS |
| AGCCTAGACAAGTTGCTATA+TGG | 0.329458 | 3.3:-76937443 | MS.gene06643:CDS |
| GCAAGTTGCATCTTCTTCCT+TGG | 0.339735 | 3.3:+76937483 | None:intergenic |
| TGAGGGTTTGGAGGATAAAA+TGG | 0.360194 | 3.3:-76936896 | MS.gene06643:CDS |
| AGCACAGAAGATGGTGGTTC+AGG | 0.365057 | 3.3:-76936970 | MS.gene06643:CDS |
| GGTTCAGAAGCTAAGTTATA+TGG | 0.367405 | 3.3:-76937034 | MS.gene06643:CDS |
| GAAGATGGTGGTTCAGGAAA+TGG | 0.372815 | 3.3:-76936964 | MS.gene06643:CDS |
| GAAATGGATACAACAATTGC+AGG | 0.379643 | 3.3:-76936948 | MS.gene06643:CDS |
| ATGCAACTTGCAAGAGATCT+TGG | 0.385707 | 3.3:-76937471 | MS.gene06643:CDS |
| TTCTAAGTTTCAGTGCCTTA+AGG | 0.396105 | 3.3:-76937337 | MS.gene06643:CDS |
| AAGACTCTTTCTCTTCCTTA+AGG | 0.407960 | 3.3:+76937322 | None:intergenic |
| TGATGAACAGATAAGATCAT+TGG | 0.455417 | 3.3:-76937538 | MS.gene06643:CDS |
| GTTCAAAACATGCAAGTTCA+AGG | 0.470409 | 3.3:-76936612 | MS.gene06643:CDS |
| GAAGAAGAGAATATTCATGA+AGG | 0.503417 | 3.3:-76937657 | MS.gene06643:CDS |
| CAGAATCAAAGTTGGAGCCA+AGG | 0.518559 | 3.3:-76937500 | MS.gene06643:CDS |
| ATTTGAGTCAGAATCAAAGT+TGG | 0.518777 | 3.3:-76937508 | MS.gene06643:CDS |
| AAGAAGAGAATATTCATGAA+GGG | 0.519573 | 3.3:-76937656 | MS.gene06643:CDS |
| AAGGAAAATAGCACAGAAGA+TGG | 0.540540 | 3.3:-76936979 | MS.gene06643:CDS |
| GAAAGAGTCTTTGCAATCAG+AGG | 0.541327 | 3.3:-76937310 | MS.gene06643:intron |
| AGAAGATAGAAAACAAGAGA+AGG | 0.569555 | 3.3:-76937566 | MS.gene06643:CDS |
| AAACATCGCATGATGGAGGA+AGG | 0.574577 | 3.3:-76937008 | MS.gene06643:CDS |
| AACCATATAGCAACTTGTCT+AGG | 0.580258 | 3.3:+76937441 | None:intergenic |
| TTCAGAACAGAAGAGCAAGA+TGG | 0.602218 | 3.3:-76937419 | MS.gene06643:CDS |
| TGATGGAGGAAGGGAAGCTA+AGG | 0.606332 | 3.3:-76936998 | MS.gene06643:CDS |
| TCAGAAGCTAAGTTATATGG+TGG | 0.615960 | 3.3:-76937031 | MS.gene06643:CDS |
| ATGGTGGAAACATCGCATGA+TGG | 0.617224 | 3.3:-76937015 | MS.gene06643:CDS |
| AACATCGCATGATGGAGGAA+GGG | 0.628539 | 3.3:-76937007 | MS.gene06643:CDS |
| GTGGAAACATCGCATGATGG+AGG | 0.645127 | 3.3:-76937012 | MS.gene06643:CDS |
| GGCCATATATAATATGATGG+AGG | 0.645919 | 3.3:-76937679 | None:intergenic |
| GAGCAAGATGGAAATCAAAG+AGG | 0.650346 | 3.3:-76937407 | MS.gene06643:CDS |
| GAAAATAGCACAGAAGATGG+TGG | 0.663671 | 3.3:-76936976 | MS.gene06643:CDS |
| AAAATGAAAGAAGCACAACA+TGG | 0.668449 | 3.3:-76936855 | MS.gene06643:CDS |
| ACAGAGAAAATTGAGGACAG+AGG | 0.671559 | 3.3:-76936832 | MS.gene06643:CDS |
| AACATGGACAGAGAAAATTG+AGG | 0.710156 | 3.3:-76936839 | MS.gene06643:CDS |
| TGGTACAATGTTGATCCATG+TGG | 0.723453 | 3.3:-76936748 | MS.gene06643:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGGAAAAAAAAATTCACA+GGG | + | chr3.3:76937159-76937178 | None:intergenic | 20.0% |
| !!! | TCAAAAAAATGAAGTTTTGT+AGG | - | chr3.3:76937639-76937658 | MS.gene06643:CDS | 20.0% |
| ! | AAGAAGAGAATATTCATGAA+GGG | - | chr3.3:76936559-76936578 | MS.gene06643:CDS | 25.0% |
| ! | AATATTCATGAAGGGTTTAA+AGG | - | chr3.3:76936567-76936586 | MS.gene06643:CDS | 25.0% |
| ! | GTTAGGAAAAAAAAATTCAC+AGG | + | chr3.3:76937160-76937179 | None:intergenic | 25.0% |
| !! | AAAGCAAAGATTTTCAAATG+AGG | - | chr3.3:76937301-76937320 | MS.gene06643:intron | 25.0% |
| !! | AAGCAAAGATTTTCAAATGA+GGG | - | chr3.3:76937302-76937321 | MS.gene06643:intron | 25.0% |
| !! | TTTTTCTTCTTTGAATTCTG+AGG | + | chr3.3:76936627-76936646 | None:intergenic | 25.0% |
| !!! | AAACTTCATTTTTTTGAGCT+TGG | + | chr3.3:76937636-76937655 | None:intergenic | 25.0% |
| !!! | GTGAATTTTTTTTTCCTAAC+AGG | - | chr3.3:76937160-76937179 | MS.gene06643:intron | 25.0% |
| AAGTTAATGTCGAGTCTATA+AGG | + | chr3.3:76937134-76937153 | None:intergenic | 30.0% | |
| AATCATGCAATAGTTCTCAA+TGG | - | chr3.3:76937501-76937520 | MS.gene06643:CDS | 30.0% | |
| AGAAGATAGAAAACAAGAGA+AGG | - | chr3.3:76936649-76936668 | MS.gene06643:intron | 30.0% | |
| ATTTGAGTCAGAATCAAAGT+TGG | - | chr3.3:76936707-76936726 | MS.gene06643:intron | 30.0% | |
| CTTGAAAAAGGAACAAAGAA+TGG | - | chr3.3:76937581-76937600 | MS.gene06643:CDS | 30.0% | |
| GAAGAAGAGAATATTCATGA+AGG | - | chr3.3:76936558-76936577 | MS.gene06643:CDS | 30.0% | |
| TGACAACAACACTTGAAAAA+TGG | - | chr3.3:76937447-76937466 | MS.gene06643:CDS | 30.0% | |
| TGATGAACAGATAAGATCAT+TGG | - | chr3.3:76936677-76936696 | MS.gene06643:intron | 30.0% | |
| ! | AAAATGAAAGAAGCACAACA+TGG | - | chr3.3:76937360-76937379 | MS.gene06643:CDS | 30.0% |
| ! | AAGATTTTCAAATGAGGGTT+TGG | - | chr3.3:76937307-76937326 | MS.gene06643:intron | 30.0% |
| !! | CATTCTTTGTTCCTTTTTCA+AGG | + | chr3.3:76937583-76937602 | None:intergenic | 30.0% |
| !! | TTTTGTAGGCTTGATTTGAT+AGG | - | chr3.3:76937653-76937672 | MS.gene06643:CDS | 30.0% |
| !!! | TTTTCAAGTGTTGTTGTCAA+GGG | + | chr3.3:76937446-76937465 | None:intergenic | 30.0% |
| !!! | TTTTTCAAGTGTTGTTGTCA+AGG | + | chr3.3:76937447-76937466 | None:intergenic | 30.0% |
| AAACATTGCAACATAGAGCA+TGG | + | chr3.3:76937553-76937572 | None:intergenic | 35.0% | |
| AACATGGACAGAGAAAATTG+AGG | - | chr3.3:76937376-76937395 | MS.gene06643:CDS | 35.0% | |
| AACCATATAGCAACTTGTCT+AGG | + | chr3.3:76936777-76936796 | None:intergenic | 35.0% | |
| AAGACTCTTTCTCTTCCTTA+AGG | + | chr3.3:76936896-76936915 | None:intergenic | 35.0% | |
| AAGGAAAATAGCACAGAAGA+TGG | - | chr3.3:76937236-76937255 | MS.gene06643:intron | 35.0% | |
| ACATGCTCAAGCTTAGTATT+AGG | - | chr3.3:76937079-76937098 | MS.gene06643:intron | 35.0% | |
| ATGCAATAGTTCTCAATGGT+TGG | - | chr3.3:76937505-76937524 | MS.gene06643:CDS | 35.0% | |
| ATGCTCTATGTTGCAATGTT+TGG | - | chr3.3:76937552-76937571 | MS.gene06643:CDS | 35.0% | |
| GAAATGGATACAACAATTGC+AGG | - | chr3.3:76937267-76937286 | MS.gene06643:intron | 35.0% | |
| GATTGATCTAACATACCACA+TGG | + | chr3.3:76937485-76937504 | None:intergenic | 35.0% | |
| GGTTCAGAAGCTAAGTTATA+TGG | - | chr3.3:76937181-76937200 | MS.gene06643:intron | 35.0% | |
| GTTCAAAACATGCAAGTTCA+AGG | - | chr3.3:76937603-76937622 | MS.gene06643:CDS | 35.0% | |
| TCAGAAGCTAAGTTATATGG+TGG | - | chr3.3:76937184-76937203 | MS.gene06643:intron | 35.0% | |
| TCAGAGGTAAGTTAGTAGTT+TGG | - | chr3.3:76936921-76936940 | MS.gene06643:CDS | 35.0% | |
| TTCTAAGTTTCAGTGCCTTA+AGG | - | chr3.3:76936878-76936897 | MS.gene06643:CDS | 35.0% | |
| ! | ATTTTCAAATGAGGGTTTGG+AGG | - | chr3.3:76937310-76937329 | MS.gene06643:intron | 35.0% |
| ! | GTTCTCAATGGTTGGATTTT+TGG | - | chr3.3:76937513-76937532 | MS.gene06643:CDS | 35.0% |
| !! | GTTTGGTGTTTCCTTGAAAA+AGG | - | chr3.3:76937569-76937588 | MS.gene06643:CDS | 35.0% |
| ACAGAGAAAATTGAGGACAG+AGG | - | chr3.3:76937383-76937402 | MS.gene06643:CDS | 40.0% | |
| ACTTAGCTTCTGAACCTGTT+AGG | + | chr3.3:76937177-76937196 | None:intergenic | 40.0% | |
| AGCCTAGACAAGTTGCTATA+TGG | - | chr3.3:76936772-76936791 | MS.gene06643:CDS | 40.0% | |
| ATGCAACTTGCAAGAGATCT+TGG | - | chr3.3:76936744-76936763 | MS.gene06643:intron | 40.0% | |
| GAAAATAGCACAGAAGATGG+TGG | - | chr3.3:76937239-76937258 | MS.gene06643:intron | 40.0% | |
| GAAAGAGTCTTTGCAATCAG+AGG | - | chr3.3:76936905-76936924 | MS.gene06643:CDS | 40.0% | |
| GACTCAGCTCGTTAAATACT+CGG | - | chr3.3:76937031-76937050 | MS.gene06643:CDS | 40.0% | |
| GAGCAAGATGGAAATCAAAG+AGG | - | chr3.3:76936808-76936827 | MS.gene06643:CDS | 40.0% | |
| TGAGGGTTTGGAGGATAAAA+TGG | - | chr3.3:76937319-76937338 | MS.gene06643:CDS | 40.0% | |
| TGGTACAATGTTGATCCATG+TGG | - | chr3.3:76937467-76937486 | MS.gene06643:CDS | 40.0% | |
| TTCAGAACAGAAGAGCAAGA+TGG | - | chr3.3:76936796-76936815 | MS.gene06643:CDS | 40.0% | |
| CAGAATCAAAGTTGGAGCCA+AGG | - | chr3.3:76936715-76936734 | MS.gene06643:intron | 45.0% | |
| GCAAGTTGCATCTTCTTCCT+TGG | + | chr3.3:76936735-76936754 | None:intergenic | 45.0% | |
| ! | AAACATCGCATGATGGAGGA+AGG | - | chr3.3:76937207-76937226 | MS.gene06643:intron | 45.0% |
| ! | AACATCGCATGATGGAGGAA+GGG | - | chr3.3:76937208-76937227 | MS.gene06643:intron | 45.0% |
| ! | ATGGTGGAAACATCGCATGA+TGG | - | chr3.3:76937200-76937219 | MS.gene06643:intron | 45.0% |
| ! | GAAGATGGTGGTTCAGGAAA+TGG | - | chr3.3:76937251-76937270 | MS.gene06643:intron | 45.0% |
| GTGGAAACATCGCATGATGG+AGG | - | chr3.3:76937203-76937222 | MS.gene06643:intron | 50.0% | |
| TGATGGAGGAAGGGAAGCTA+AGG | - | chr3.3:76937217-76937236 | MS.gene06643:intron | 50.0% | |
| ! | AGCACAGAAGATGGTGGTTC+AGG | - | chr3.3:76937245-76937264 | MS.gene06643:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 76936549 | 76937688 | 76936549 | ID=MS.gene06643 |
| chr3.3 | mRNA | 76936549 | 76937688 | 76936549 | ID=MS.gene06643.t1;Parent=MS.gene06643 |
| chr3.3 | exon | 76937311 | 76937688 | 76937311 | ID=MS.gene06643.t1.exon1;Parent=MS.gene06643.t1 |
| chr3.3 | CDS | 76937311 | 76937688 | 76937311 | ID=cds.MS.gene06643.t1;Parent=MS.gene06643.t1 |
| chr3.3 | exon | 76936749 | 76937055 | 76936749 | ID=MS.gene06643.t1.exon2;Parent=MS.gene06643.t1 |
| chr3.3 | CDS | 76936749 | 76937055 | 76936749 | ID=cds.MS.gene06643.t1;Parent=MS.gene06643.t1 |
| chr3.3 | exon | 76936549 | 76936646 | 76936549 | ID=MS.gene06643.t1.exon3;Parent=MS.gene06643.t1 |
| chr3.3 | CDS | 76936549 | 76936646 | 76936549 | ID=cds.MS.gene06643.t1;Parent=MS.gene06643.t1 |
| Gene Sequence |
| Protein sequence |
