AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98064


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98064.t1 MTR_5g045520 98.010 402 8 0 1 402 27 428 0.0 806
MS.gene98064.t1 MTR_5g045520 98.010 402 8 0 1 402 1 402 0.0 804
MS.gene98064.t1 MTR_5g044710 81.481 405 63 4 1 401 1 397 0.0 639
MS.gene98064.t1 MTR_5g045530 78.960 404 79 3 1 401 1 401 0.0 599
MS.gene98064.t1 MTR_5g044710 81.957 327 50 3 79 401 2 323 0.0 509
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98064.t1 AT2G03530 79.551 401 79 2 1 401 1 398 0.0 623
MS.gene98064.t1 AT2G03530 79.551 401 79 2 1 401 1 398 0.0 623
MS.gene98064.t1 AT2G03530 79.420 379 75 2 1 379 1 376 0.0 591
MS.gene98064.t1 AT2G03590 74.065 401 93 3 1 401 1 390 0.0 579
MS.gene98064.t1 AT2G03590 74.065 401 93 3 1 401 1 390 0.0 579
MS.gene98064.t1 AT2G03520 70.574 401 118 0 1 401 1 401 0.0 557
MS.gene98064.t1 AT1G26440 68.238 403 124 2 1 401 9 409 0.0 535
MS.gene98064.t1 AT1G26440 68.238 403 124 2 1 401 9 409 0.0 535
MS.gene98064.t1 AT2G03530 77.215 316 69 2 86 401 1 313 7.07e-166 468
MS.gene98064.t1 AT2G03530 77.215 316 69 2 86 401 1 313 7.07e-166 468
MS.gene98064.t1 AT1G26440 62.283 403 112 3 1 401 9 373 1.16e-165 469
MS.gene98064.t1 AT1G26440 61.787 403 115 3 1 401 9 374 2.54e-165 469
MS.gene98064.t1 AT1G26440 67.492 323 103 1 79 401 16 336 1.43e-152 435
MS.gene98064.t1 AT1G26440 67.492 323 103 1 79 401 16 336 1.43e-152 435
MS.gene98064.t1 AT2G03600 62.391 343 105 5 1 337 1 325 1.18e-146 420
MS.gene98064.t1 AT2G03600 61.357 339 107 4 1 337 1 317 1.08e-144 414
MS.gene98064.t1 AT2G03600 67.159 271 74 2 1 271 1 256 6.96e-129 371
MS.gene98064.t1 AT2G03600 67.159 271 74 2 1 271 1 256 6.96e-129 371
MS.gene98064.t1 AT1G26440 59.443 323 94 2 79 401 16 301 4.39e-127 369
MS.gene98064.t1 AT2G03600 62.199 291 72 3 1 268 1 276 5.05e-123 357
MS.gene98064.t1 AT1G26440 62.030 266 99 1 136 401 84 347 5.28e-108 322
MS.gene98064.t1 AT1G26440 73.626 91 22 1 1 89 9 99 8.15e-34 129
MS.gene98064.t1 AT2G03600 64.516 186 54 1 86 271 1 174 4.16e-77 236

Find 94 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATCATTAACAAATTATT+TGG 0.088095 5.4:-36091149 MS.gene98064:CDS
TGGGAATGGCCTTCAGTTTA+TGG 0.150076 5.4:-36091074 MS.gene98064:CDS
GCTGGTTTCCTTTGTGGATT+TGG 0.163759 5.4:-36091094 MS.gene98064:CDS
GCAAGTTGAGTTAAGAAATT+TGG 0.189492 5.4:+36093019 None:intergenic
TGGAAGAGGCTGGGCCTTGC+TGG 0.226976 5.4:-36091116 MS.gene98064:CDS
TTACTCAATCACCAATTTCT+TGG 0.259869 5.4:-36093098 MS.gene98064:CDS
CTGGTTTCCTTTGTGGATTT+GGG 0.265773 5.4:-36091093 MS.gene98064:CDS
TGAGAACAGAAGAGCTATTA+AGG 0.268133 5.4:-36091511 MS.gene98064:intron
ATTGTTACTTGCAGGATAAT+TGG 0.271037 5.4:-36092756 MS.gene98064:intron
CTTGAGCTTAGCTTGATTAT+CGG 0.289315 5.4:+36092328 None:intergenic
TGTTGAGTTGAAAATGTATT+TGG 0.308041 5.4:-36093242 None:intergenic
GCAAGCATAACCGTTGTTAT+AGG 0.323418 5.4:-36092625 MS.gene98064:intron
TTGCTGGCTGGTTTCCTTTG+TGG 0.325240 5.4:-36091100 MS.gene98064:CDS
GATAATAGCAGCCAAGAAAT+TGG 0.327869 5.4:+36093087 None:intergenic
GGGAATGGCCTTCAGTTTAT+GGG 0.352549 5.4:-36091073 MS.gene98064:CDS
ACATTTGGTCAGATAGGAAA+TGG 0.356798 5.4:-36093055 MS.gene98064:CDS
AGAGGCTGGGCCTTGCTGGC+TGG 0.370965 5.4:-36091112 MS.gene98064:CDS
AGGAAGAACATATATCTTAC+TGG 0.373403 5.4:-36090727 MS.gene98064:CDS
TAACAAATTATTTGGGAGAC+TGG 0.387851 5.4:-36091141 MS.gene98064:CDS
CAGTATGCATTTGCTCTAGT+TGG 0.397774 5.4:-36092673 MS.gene98064:CDS
GGTGTGCTCATGGCATCATC+AGG 0.399673 5.4:-36090672 MS.gene98064:CDS
TCATCATTAACAAATTATTT+GGG 0.400043 5.4:-36091148 MS.gene98064:CDS
GGTGGTGTGGTCCTTAGCCT+TGG 0.422864 5.4:-36092709 MS.gene98064:CDS
TTTCTTAACTCAACTTGCTC+AGG 0.423669 5.4:-36093014 MS.gene98064:intron
TTCCTTTGTGGATTTGGGAA+TGG 0.434124 5.4:-36091088 MS.gene98064:CDS
TTCGGGAAAAGACCTTTGAT+TGG 0.438040 5.4:-36091382 MS.gene98064:CDS
TTTATGTTTATTGTGGCTGT+TGG 0.443744 5.4:-36090693 MS.gene98064:CDS
GCCAGGGACTCTTTGAAAGA+AGG 0.444967 5.4:-36091712 MS.gene98064:intron
GAGAGCAAGGGAGGTGCCAT+AGG 0.456449 5.4:-36093217 MS.gene98064:CDS
TCGGGAAAAGACCTTTGATT+GGG 0.462181 5.4:-36091381 MS.gene98064:CDS
TGTGGCTGTTGGTGTGCTCA+TGG 0.472927 5.4:-36090682 MS.gene98064:CDS
GATTCCAGCGAAGAAAACTA+TGG 0.475490 5.4:+36091354 None:intergenic
GGAGAATATAGGAAATCATC+AGG 0.478060 5.4:-36090747 MS.gene98064:CDS
AATGTATTTGGTGGAGAGCA+AGG 0.480973 5.4:-36093230 MS.gene98064:CDS
GTGGTGTGGTCCTTAGCCTT+GGG 0.483800 5.4:-36092708 MS.gene98064:CDS
AGTATGCATTTGCTCTAGTT+GGG 0.489967 5.4:-36092672 MS.gene98064:CDS
AGTTCAAGACAGGGTGGTAA+AGG 0.491004 5.4:+36091179 None:intergenic
CATTTGGTCAGATAGGAAAT+GGG 0.496722 5.4:-36093054 MS.gene98064:CDS
AATTGGTGATTGAGTAATCA+AGG 0.498411 5.4:+36093104 None:intergenic
GACTTGGGTAAGTTCAAGAC+AGG 0.501949 5.4:+36091169 None:intergenic
TGCAGCAGCTGATGCTGTCC+AGG 0.503952 5.4:-36091032 MS.gene98064:intron
TGCCATAGGGTGCATGCTGT+TGG 0.512313 5.4:-36093203 MS.gene98064:CDS
AGCCAACAGCATGCACCCTA+TGG 0.513094 5.4:+36093201 None:intergenic
ATAATTTGTTAATGATGACT+TGG 0.514376 5.4:+36091153 None:intergenic
AATTATTTGGGAGACTGGAA+TGG 0.515033 5.4:-36091136 MS.gene98064:CDS
TATGTTGTTTATGTTTATTG+TGG 0.518587 5.4:-36090700 MS.gene98064:CDS
TTTGTTGCTAAGTTGAATGC+TGG 0.524858 5.4:+36091313 None:intergenic
GAGACTGGAATGGAAGAGGC+TGG 0.524923 5.4:-36091126 MS.gene98064:CDS
CTGTATTGACTCTGTTAGAA+AGG 0.527795 5.4:-36093153 MS.gene98064:CDS
TTGGGAGACTGGAATGGAAG+AGG 0.530432 5.4:-36091130 MS.gene98064:CDS
TGAGTTGAAAATGTATTTGG+TGG 0.530800 5.4:-36093239 None:intergenic
TAATTTGTTAATGATGACTT+GGG 0.531222 5.4:+36091154 None:intergenic
GGTAGGTATGCTGTGGAAGA+CGG 0.545700 5.4:+36093125 None:intergenic
GGAAGAACATATATCTTACT+GGG 0.545902 5.4:-36090726 MS.gene98064:CDS
GGCGGTGTAAACATTCAGAT+GGG 0.548193 5.4:+36091258 None:intergenic
TTTATGGGAGGTCAAGCTGC+TGG 0.548399 5.4:-36091058 MS.gene98064:CDS
ATTTGCTCTAGTTGGGCTGT+CGG 0.550748 5.4:-36092665 MS.gene98064:CDS
ACAAAGGAAACCAGCCAGCA+AGG 0.557066 5.4:+36091102 None:intergenic
CGGTGAGATACCTATAACAA+CGG 0.557886 5.4:+36092615 None:intergenic
AGGCGGTGTAAACATTCAGA+TGG 0.559268 5.4:+36091257 None:intergenic
TTAAATAATAGTTAAATCGA+AGG 0.562637 5.4:-36091601 MS.gene98064:intron
ATGTATTTGGTGGAGAGCAA+GGG 0.570462 5.4:-36093229 MS.gene98064:CDS
TGGACAGATTCCCAAGGCTA+AGG 0.573485 5.4:+36092698 None:intergenic
GCCCTCAGTAATGTTTGCAA+TGG 0.573654 5.4:-36092734 MS.gene98064:CDS
AAATCGAAGGATCTTGAAAG+TGG 0.573772 5.4:-36091588 MS.gene98064:CDS
TCTAACAGAGTCAATACAGC+AGG 0.576923 5.4:+36093157 None:intergenic
GGTGATTGAGTAATCAAGGT+AGG 0.578529 5.4:+36093108 None:intergenic
AGACTGGAATGGAAGAGGCT+GGG 0.582182 5.4:-36091125 MS.gene98064:CDS
TCAGTAATGTTTGCAATGGT+AGG 0.586531 5.4:-36092730 MS.gene98064:CDS
TCATGGCATCATCAGGGCAC+AGG 0.595088 5.4:-36090665 MS.gene98064:CDS
TCTTTGAAAGAAGGAAACAT+AGG 0.600384 5.4:-36091703 MS.gene98064:intron
ACTATGGTTAACCCAATCAA+AGG 0.601160 5.4:+36091370 None:intergenic
GTGTGCTCATGGCATCATCA+GGG 0.603350 5.4:-36090671 MS.gene98064:CDS
TATGCTTGCTGTAATCACTT+CGG 0.607518 5.4:+36092639 None:intergenic
AGAGCAAGGGAGGTGCCATA+GGG 0.611608 5.4:-36093216 MS.gene98064:CDS
CTTGACCTCCCATAAACTGA+AGG 0.611748 5.4:+36091065 None:intergenic
CGATAATCAAGCTAAGCTCA+AGG 0.612303 5.4:-36092327 MS.gene98064:CDS
TAATCAAGGTAGGTATGCTG+TGG 0.617217 5.4:+36093118 None:intergenic
GTTTGCAATGGTAGGTGGTG+TGG 0.619213 5.4:-36092722 MS.gene98064:CDS
ACCATTGCAAACATTACTGA+GGG 0.627278 5.4:+36092733 None:intergenic
AATGGCCTTCAGTTTATGGG+AGG 0.649540 5.4:-36091070 MS.gene98064:CDS
TATTTGGTGGAGAGCAAGGG+AGG 0.652359 5.4:-36093226 MS.gene98064:CDS
TACCATTGCAAACATTACTG+AGG 0.658504 5.4:+36092732 None:intergenic
GGCCATTCCCAAATCCACAA+AGG 0.662272 5.4:+36091086 None:intergenic
TTGACTCTGTTAGAAAGGCG+AGG 0.664406 5.4:-36093148 MS.gene98064:CDS
GTAATGTTTGCAATGGTAGG+TGG 0.672338 5.4:-36092727 MS.gene98064:CDS
TGAAAGTGGAAGCAATTCTG+CGG 0.679325 5.4:-36091574 MS.gene98064:CDS
GCGGTGTAAACATTCAGATG+GGG 0.700637 5.4:+36091259 None:intergenic
TAGAGCAAATGCATACTGTG+TGG 0.706616 5.4:+36092678 None:intergenic
GAAGAACATATATCTTACTG+GGG 0.713784 5.4:-36090725 MS.gene98064:CDS
ACTTAGCAACAAATGACCAG+TGG 0.727226 5.4:-36091303 MS.gene98064:CDS
ACTGTGTGGACAGATTCCCA+AGG 0.729854 5.4:+36092692 None:intergenic
ACTTGGGTAAGTTCAAGACA+GGG 0.732443 5.4:+36091170 None:intergenic
TGGGTAAGTTCAAGACAGGG+TGG 0.743598 5.4:+36091173 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTGATTTTGAAATAT+TGG - chr5.4:36091000-36091019 MS.gene98064:intron 10.0%
!!! TAAATTGATTTTGAAATATT+GGG - chr5.4:36091001-36091020 MS.gene98064:intron 10.0%
!! AATTGAAACTATAAATTACA+AGG + chr5.4:36092082-36092101 None:intergenic 15.0%
!! CTATTATTTAAACATTGAAA+AGG + chr5.4:36092275-36092294 None:intergenic 15.0%
!! TCATCATTAACAAATTATTT+GGG - chr5.4:36092737-36092756 MS.gene98064:CDS 15.0%
!! TTAAATAATAGTTAAATCGA+AGG - chr5.4:36092284-36092303 MS.gene98064:intron 15.0%
!! TTAGATATATTGAGAAAATT+AGG + chr5.4:36093009-36093028 None:intergenic 15.0%
!!! AAATTGATTTTGAAATATTG+GGG - chr5.4:36091002-36091021 MS.gene98064:intron 15.0%
!!! TAATTTTCTATTGATTATGT+CGG + chr5.4:36091293-36091312 None:intergenic 15.0%
!!! TTTTCTTTCTCTTTTTTAAA+AGG + chr5.4:36091726-36091745 None:intergenic 15.0%
!! GTCATCATTAACAAATTATT+TGG - chr5.4:36092736-36092755 MS.gene98064:CDS 20.0%
!! GTGTAAATAATTCTTTCTAA+AGG - chr5.4:36091818-36091837 MS.gene98064:intron 20.0%
!! TATTTAAACATTGAAAAGGT+AGG + chr5.4:36092271-36092290 None:intergenic 20.0%
!!! ATAATTTGTTAATGATGACT+TGG + chr5.4:36092735-36092754 None:intergenic 20.0%
!!! ATTATCATTGCTTTTACATT+TGG - chr5.4:36090815-36090834 MS.gene98064:intron 20.0%
!!! CTTCTTTTGTTATATAAATC+TGG - chr5.4:36092117-36092136 MS.gene98064:intron 20.0%
!!! TAATTTGTTAATGATGACTT+GGG + chr5.4:36092734-36092753 None:intergenic 20.0%
!!! TATGTTGTTTATGTTTATTG+TGG - chr5.4:36093185-36093204 MS.gene98064:CDS 20.0%
!!! TTCTCTTTTTTAAAAGGAAA+AGG + chr5.4:36091720-36091739 None:intergenic 20.0%
!!! TTTGTTATATAAATCTGGTA+GGG - chr5.4:36092122-36092141 MS.gene98064:intron 20.0%
!!! TTTTGTTATATAAATCTGGT+AGG - chr5.4:36092121-36092140 MS.gene98064:intron 20.0%
! AATACAGTAGAATTCAATAC+TGG + chr5.4:36091395-36091414 None:intergenic 25.0%
! AGATACTGAAAAATAGAAGA+AGG + chr5.4:36092651-36092670 None:intergenic 25.0%
! ATCAGTGTTAATATCATTTC+AGG + chr5.4:36090963-36090982 None:intergenic 25.0%
! GAAAATTGTGATTACAAAGT+TGG + chr5.4:36092960-36092979 None:intergenic 25.0%
! GTCATCCAAAAAGTAATTTA+AGG + chr5.4:36091446-36091465 None:intergenic 25.0%
! GTTAATGAGTTATGATTCAT+TGG + chr5.4:36091953-36091972 None:intergenic 25.0%
!!! CACAACCTTAAATTACTTTT+TGG - chr5.4:36091438-36091457 MS.gene98064:intron 25.0%
!!! TAAAAGAGTTCCCTTTATTT+TGG + chr5.4:36091909-36091928 None:intergenic 25.0%
!!! TCAGTATCTTGTTTTGTTAT+CGG - chr5.4:36092662-36092681 MS.gene98064:CDS 25.0%
!!! TTGTTTTGTTTGGAGAATAT+AGG - chr5.4:36093127-36093146 MS.gene98064:CDS 25.0%
AAAATCTTGTTAAACTCACC+TGG + chr5.4:36092874-36092893 None:intergenic 30.0%
AACTTAAAGGATTGCTTCAT+TGG - chr5.4:36092226-36092245 MS.gene98064:intron 30.0%
AACTTTGTTCAATTTGTCAC+AGG - chr5.4:36091415-36091434 MS.gene98064:intron 30.0%
AAGTAGTACCTCCAAAATAA+AGG - chr5.4:36091895-36091914 MS.gene98064:intron 30.0%
ACTTATAAAAGTGATTGAGC+TGG + chr5.4:36091879-36091898 None:intergenic 30.0%
AGGAAGAACATATATCTTAC+TGG - chr5.4:36093158-36093177 MS.gene98064:CDS 30.0%
AGTAGTACCTCCAAAATAAA+GGG - chr5.4:36091896-36091915 MS.gene98064:intron 30.0%
AGTGGCACAGTTTAAAAAAA+GGG - chr5.4:36092600-36092619 MS.gene98064:intron 30.0%
ATTCTCTATGAGAAAAACTG+CGG + chr5.4:36092355-36092374 None:intergenic 30.0%
CAATACTGGATTATGTTGAA+GGG + chr5.4:36091381-36091400 None:intergenic 30.0%
CACTGTTTAGAAACAGAAAT+AGG - chr5.4:36091760-36091779 MS.gene98064:intron 30.0%
GAAATATTGGGGAAATTTGA+AGG - chr5.4:36091013-36091032 MS.gene98064:intron 30.0%
GAAGAACATATATCTTACTG+GGG - chr5.4:36093160-36093179 MS.gene98064:CDS 30.0%
GACGAGTTCTCATTAAATAT+CGG + chr5.4:36092924-36092943 None:intergenic 30.0%
GGAAGAACATATATCTTACT+GGG - chr5.4:36093159-36093178 MS.gene98064:CDS 30.0%
TAACAAATTATTTGGGAGAC+TGG - chr5.4:36092744-36092763 MS.gene98064:CDS 30.0%
TACTGAAAAATAGAAGAAGG+CGG + chr5.4:36092648-36092667 None:intergenic 30.0%
TCAATACTGGATTATGTTGA+AGG + chr5.4:36091382-36091401 None:intergenic 30.0%
TTACTCAATCACCAATTTCT+TGG - chr5.4:36090787-36090806 MS.gene98064:CDS 30.0%
TTTATGTTTATTGTGGCTGT+TGG - chr5.4:36093192-36093211 MS.gene98064:CDS 30.0%
! AATTGGTGATTGAGTAATCA+AGG + chr5.4:36090784-36090803 None:intergenic 30.0%
! ATTGTTACTTGCAGGATAAT+TGG - chr5.4:36091129-36091148 MS.gene98064:CDS 30.0%
! CTTCATAAATTGTTACTTGC+AGG - chr5.4:36091121-36091140 MS.gene98064:CDS 30.0%
! GCAAGTTGAGTTAAGAAATT+TGG + chr5.4:36090869-36090888 None:intergenic 30.0%
! TCTTTGAAAGAAGGAAACAT+AGG - chr5.4:36092182-36092201 MS.gene98064:intron 30.0%
! TTTGAATGCATTGATGAAAC+AGG - chr5.4:36093074-36093093 MS.gene98064:CDS 30.0%
!! CAAGTTGATAATCATACGAA+GGG + chr5.4:36091663-36091682 None:intergenic 30.0%
!! TTTTGGGGAATTGTTTTGTT+TGG - chr5.4:36093117-36093136 MS.gene98064:CDS 30.0%
AAATCGAAGGATCTTGAAAG+TGG - chr5.4:36092297-36092316 MS.gene98064:CDS 35.0%
AATTATTTGGGAGACTGGAA+TGG - chr5.4:36092749-36092768 MS.gene98064:intron 35.0%
ACATTTGGTCAGATAGGAAA+TGG - chr5.4:36090830-36090849 MS.gene98064:intron 35.0%
ACCATTGCAAACATTACTGA+GGG + chr5.4:36091155-36091174 None:intergenic 35.0%
ACTATGGTTAACCCAATCAA+AGG + chr5.4:36092518-36092537 None:intergenic 35.0%
AGTATGCATTTGCTCTAGTT+GGG - chr5.4:36091213-36091232 MS.gene98064:CDS 35.0%
CAGTGGCACAGTTTAAAAAA+AGG - chr5.4:36092599-36092618 MS.gene98064:intron 35.0%
CATTTGGTCAGATAGGAAAT+GGG - chr5.4:36090831-36090850 MS.gene98064:intron 35.0%
CTTCACTTGTTTCATCGTAA+TGG - chr5.4:36090913-36090932 MS.gene98064:intron 35.0%
GATAATAGCAGCCAAGAAAT+TGG + chr5.4:36090801-36090820 None:intergenic 35.0%
GATTCATTGGAGAAGAGAAA+AGG + chr5.4:36091940-36091959 None:intergenic 35.0%
GATTGTTACTGCTGATAAAG+AGG - chr5.4:36091977-36091996 MS.gene98064:intron 35.0%
GGAGAATATAGGAAATCATC+AGG - chr5.4:36093138-36093157 MS.gene98064:CDS 35.0%
GGTTCAAATCCTTCAAAACA+CGG - chr5.4:36090934-36090953 MS.gene98064:intron 35.0%
GTAAGCACACAATACATACA+AGG + chr5.4:36091611-36091630 None:intergenic 35.0%
TACCATTGCAAACATTACTG+AGG + chr5.4:36091156-36091175 None:intergenic 35.0%
TAGTGTCAAACGAAGTCAAA+CGG - chr5.4:36092981-36093000 MS.gene98064:intron 35.0%
TCAGTAATGTTTGCAATGGT+AGG - chr5.4:36091155-36091174 MS.gene98064:CDS 35.0%
TCCAACAAGGTTCAACTTAA+AGG - chr5.4:36092213-36092232 MS.gene98064:intron 35.0%
TGAGAACAGAAGAGCTATTA+AGG - chr5.4:36092374-36092393 MS.gene98064:CDS 35.0%
! AGAAATAGGAATTGCCACTT+TGG - chr5.4:36091774-36091793 MS.gene98064:intron 35.0%
! CTTGAGCTTAGCTTGATTAT+CGG + chr5.4:36091560-36091579 None:intergenic 35.0%
! GATTACAAAGTTGGCCTATA+TGG + chr5.4:36092951-36092970 None:intergenic 35.0%
! GCTTTTACATTTGGTCAGAT+AGG - chr5.4:36090824-36090843 MS.gene98064:intron 35.0%
! TATCAGAAACTGTTTTGCCA+GGG - chr5.4:36092157-36092176 MS.gene98064:intron 35.0%
! TTAACCATAGTTTTCTTCGC+TGG - chr5.4:36092527-36092546 MS.gene98064:intron 35.0%
! TTTCTTAACTCAACTTGCTC+AGG - chr5.4:36090871-36090890 MS.gene98064:intron 35.0%
! TTTGTTGCTAAGTTGAATGC+TGG + chr5.4:36092575-36092594 None:intergenic 35.0%
!! CTGTATTGACTCTGTTAGAA+AGG - chr5.4:36090732-36090751 MS.gene98064:CDS 35.0%
!! GAAATAGGAATTGCCACTTT+GGG - chr5.4:36091775-36091794 MS.gene98064:intron 35.0%
!! GCAAGTTGATAATCATACGA+AGG + chr5.4:36091664-36091683 None:intergenic 35.0%
!! TATGCTTGCTGTAATCACTT+CGG + chr5.4:36091249-36091268 None:intergenic 35.0%
!! TCCTTTAAGTTGAACCTTGT+TGG + chr5.4:36092217-36092236 None:intergenic 35.0%
!! TTTAAGTTGAACCTTGTTGG+AGG + chr5.4:36092214-36092233 None:intergenic 35.0%
!!! AAGAGTTCCCTTTATTTTGG+AGG + chr5.4:36091906-36091925 None:intergenic 35.0%
!!! AGTTGGTTGTTTTTTGGTTG+CGG - chr5.4:36091498-36091517 MS.gene98064:intron 35.0%
!!! CTTTTTTTAAACTGTGCCAC+TGG + chr5.4:36092601-36092620 None:intergenic 35.0%
!!! TGTTGGCTCTTTTCTTCTTA+GGG - chr5.4:36090699-36090718 MS.gene98064:CDS 35.0%
ACCAAAAAACAACCAACTCC+AGG + chr5.4:36091496-36091515 None:intergenic 40.0%
ACTTAGCAACAAATGACCAG+TGG - chr5.4:36092582-36092601 MS.gene98064:intron 40.0%
ACTTGGGTAAGTTCAAGACA+GGG + chr5.4:36092718-36092737 None:intergenic 40.0%
AGAACTCGTCATTGCCATAT+AGG - chr5.4:36092934-36092953 MS.gene98064:intron 40.0%
AGCTATGATAGTTCCCAAAG+TGG + chr5.4:36091791-36091810 None:intergenic 40.0%
ATAGGTAAGAACCTCCAACA+AGG - chr5.4:36092200-36092219 MS.gene98064:intron 40.0%
CAGTATGCATTTGCTCTAGT+TGG - chr5.4:36091212-36091231 MS.gene98064:CDS 40.0%
CCAAAAAACAACCAACTCCA+GGG + chr5.4:36091495-36091514 None:intergenic 40.0%
CGATAATCAAGCTAAGCTCA+AGG - chr5.4:36091558-36091577 MS.gene98064:CDS 40.0%
CGGTGAGATACCTATAACAA+CGG + chr5.4:36091273-36091292 None:intergenic 40.0%
CTGGTTTCCTTTGTGGATTT+GGG - chr5.4:36092792-36092811 MS.gene98064:intron 40.0%
GAGTGCGGAATTTGTGTTTA+TGG - chr5.4:36092040-36092059 MS.gene98064:intron 40.0%
GATTCCAGCGAAGAAAACTA+TGG + chr5.4:36092534-36092553 None:intergenic 40.0%
GCAAGCATAACCGTTGTTAT+AGG - chr5.4:36091260-36091279 MS.gene98064:CDS 40.0%
GGTGATTGAGTAATCAAGGT+AGG + chr5.4:36090780-36090799 None:intergenic 40.0%
GTAATGTTTGCAATGGTAGG+TGG - chr5.4:36091158-36091177 MS.gene98064:CDS 40.0%
TAATCAAGGTAGGTATGCTG+TGG + chr5.4:36090770-36090789 None:intergenic 40.0%
TAGAGCAAATGCATACTGTG+TGG + chr5.4:36091210-36091229 None:intergenic 40.0%
TCGGGAAAAGACCTTTGATT+GGG - chr5.4:36092504-36092523 MS.gene98064:intron 40.0%
TCTAACAGAGTCAATACAGC+AGG + chr5.4:36090731-36090750 None:intergenic 40.0%
TCTGCGGAAAAATTGAAAGC+AGG - chr5.4:36092327-36092346 MS.gene98064:CDS 40.0%
TGAAAGTGGAAGCAATTCTG+CGG - chr5.4:36092311-36092330 MS.gene98064:CDS 40.0%
TGAATTTCAGTTGCTGAGTG+CGG - chr5.4:36092025-36092044 MS.gene98064:intron 40.0%
TGATAATCATACGAAGGGAC+CGG + chr5.4:36091658-36091677 None:intergenic 40.0%
TGGAGAAGAGAAAAGGAGTT+TGG + chr5.4:36091933-36091952 None:intergenic 40.0%
TTCCTTTGTGGATTTGGGAA+TGG - chr5.4:36092797-36092816 MS.gene98064:intron 40.0%
TTCGGGAAAAGACCTTTGAT+TGG - chr5.4:36092503-36092522 MS.gene98064:intron 40.0%
! AAAGCTGAGATTCTTTTCCC+TGG - chr5.4:36091475-36091494 MS.gene98064:intron 40.0%
! ATGTATTTGGTGGAGAGCAA+GGG - chr5.4:36090656-36090675 MS.gene98064:CDS 40.0%
! CTATCAGAAACTGTTTTGCC+AGG - chr5.4:36092156-36092175 MS.gene98064:intron 40.0%
! CTCTTTTCTTCTTAGGGACA+TGG - chr5.4:36090705-36090724 MS.gene98064:CDS 40.0%
! TAACTCAACTTGCTCAGGTT+CGG - chr5.4:36090876-36090895 MS.gene98064:intron 40.0%
! TTCCACTTGTGAGCACTTTT+TGG - chr5.4:36093100-36093119 MS.gene98064:CDS 40.0%
!! TCCACTTGTGAGCACTTTTT+GGG - chr5.4:36093101-36093120 MS.gene98064:CDS 40.0%
!!! CTGTTGGCTCTTTTCTTCTT+AGG - chr5.4:36090698-36090717 MS.gene98064:CDS 40.0%
!!! TTTTTGGTTGCGGTTTGTCT+AGG - chr5.4:36091508-36091527 MS.gene98064:intron 40.0%
AATGGCCTTCAGTTTATGGG+AGG - chr5.4:36092815-36092834 MS.gene98064:intron 45.0%
AGGCGGTGTAAACATTCAGA+TGG + chr5.4:36092631-36092650 None:intergenic 45.0%
AGTTCAAGACAGGGTGGTAA+AGG + chr5.4:36092709-36092728 None:intergenic 45.0%
ATTTGCTCTAGTTGGGCTGT+CGG - chr5.4:36091220-36091239 MS.gene98064:CDS 45.0%
CTTGACCTCCCATAAACTGA+AGG + chr5.4:36092823-36092842 None:intergenic 45.0%
GACTTGGGTAAGTTCAAGAC+AGG + chr5.4:36092719-36092738 None:intergenic 45.0%
GCCCTCAGTAATGTTTGCAA+TGG - chr5.4:36091151-36091170 MS.gene98064:CDS 45.0%
GCGGTGTAAACATTCAGATG+GGG + chr5.4:36092629-36092648 None:intergenic 45.0%
GGCGGTGTAAACATTCAGAT+GGG + chr5.4:36092630-36092649 None:intergenic 45.0%
GGGAATGGCCTTCAGTTTAT+GGG - chr5.4:36092812-36092831 MS.gene98064:intron 45.0%
GTCTATTTAACTCCCCTTGC+CGG - chr5.4:36091636-36091655 MS.gene98064:intron 45.0%
TACTCTTAAAGTTCTGCCGC+AGG - chr5.4:36092478-36092497 MS.gene98064:intron 45.0%
TCCTTCTTTCAAAGAGTCCC+TGG + chr5.4:36092177-36092196 None:intergenic 45.0%
TGGGAATGGCCTTCAGTTTA+TGG - chr5.4:36092811-36092830 MS.gene98064:intron 45.0%
TTGACTCTGTTAGAAAGGCG+AGG - chr5.4:36090737-36090756 MS.gene98064:CDS 45.0%
! AAAGTTCTGCCGCAGGTTTT+CGG - chr5.4:36092485-36092504 MS.gene98064:intron 45.0%
! GAGATTCTTTTCCCTGGAGT+TGG - chr5.4:36091481-36091500 MS.gene98064:intron 45.0%
! GCTGGTTTCCTTTGTGGATT+TGG - chr5.4:36092791-36092810 MS.gene98064:intron 45.0%
!! CCACTTGTGAGCACTTTTTG+GGG - chr5.4:36093102-36093121 MS.gene98064:CDS 45.0%
!! TTCAGGTGTCCGTGTTTTGA+AGG + chr5.4:36090946-36090965 None:intergenic 45.0%
!!! CCCTGGAGTTGGTTGTTTTT+TGG - chr5.4:36091492-36091511 MS.gene98064:intron 45.0%
ACAAAGGAAACCAGCCAGCA+AGG + chr5.4:36092786-36092805 None:intergenic 50.0%
ACTGTGTGGACAGATTCCCA+AGG + chr5.4:36091196-36091215 None:intergenic 50.0%
AGACTGGAATGGAAGAGGCT+GGG - chr5.4:36092760-36092779 MS.gene98064:intron 50.0%
GGCCATTCCCAAATCCACAA+AGG + chr5.4:36092802-36092821 None:intergenic 50.0%
GGTAGGTATGCTGTGGAAGA+CGG + chr5.4:36090763-36090782 None:intergenic 50.0%
GTGTGCTCATGGCATCATCA+GGG - chr5.4:36093214-36093233 MS.gene98064:CDS 50.0%
GTTTGCAATGGTAGGTGGTG+TGG - chr5.4:36091163-36091182 MS.gene98064:CDS 50.0%
TGGACAGATTCCCAAGGCTA+AGG + chr5.4:36091190-36091209 None:intergenic 50.0%
TGGGTAAGTTCAAGACAGGG+TGG + chr5.4:36092715-36092734 None:intergenic 50.0%
TTGGGAGACTGGAATGGAAG+AGG - chr5.4:36092755-36092774 MS.gene98064:intron 50.0%
TTTATGGGAGGTCAAGCTGC+TGG - chr5.4:36092827-36092846 MS.gene98064:intron 50.0%
! AAGTTCTGCCGCAGGTTTTC+GGG - chr5.4:36092486-36092505 MS.gene98064:intron 50.0%
! GCCAGGGACTCTTTGAAAGA+AGG - chr5.4:36092173-36092192 MS.gene98064:intron 50.0%
! GGTCTTTTCCCGAAAACCTG+CGG + chr5.4:36092497-36092516 None:intergenic 50.0%
! TATTTGGTGGAGAGCAAGGG+AGG - chr5.4:36090659-36090678 MS.gene98064:CDS 50.0%
!! CCCCAAAAAGTGCTCACAAG+TGG + chr5.4:36093105-36093124 None:intergenic 50.0%
!! TTGCTGGCTGGTTTCCTTTG+TGG - chr5.4:36092785-36092804 MS.gene98064:intron 50.0%
AGCCAACAGCATGCACCCTA+TGG + chr5.4:36090687-36090706 None:intergenic 55.0%
ATCATACGAAGGGACCGGCA+AGG + chr5.4:36091653-36091672 None:intergenic 55.0%
GAGACTGGAATGGAAGAGGC+TGG - chr5.4:36092759-36092778 MS.gene98064:intron 55.0%
GGTGTGCTCATGGCATCATC+AGG - chr5.4:36093213-36093232 MS.gene98064:CDS 55.0%
TCATACGAAGGGACCGGCAA+GGG + chr5.4:36091652-36091671 None:intergenic 55.0%
TCATGGCATCATCAGGGCAC+AGG - chr5.4:36093220-36093239 MS.gene98064:CDS 55.0%
TGCCATAGGGTGCATGCTGT+TGG - chr5.4:36090682-36090701 MS.gene98064:CDS 55.0%
TGTGGCTGTTGGTGTGCTCA+TGG - chr5.4:36093203-36093222 MS.gene98064:CDS 55.0%
! GTGGTGTGGTCCTTAGCCTT+GGG - chr5.4:36091177-36091196 MS.gene98064:CDS 55.0%
!! AGAGCAAGGGAGGTGCCATA+GGG - chr5.4:36090669-36090688 MS.gene98064:CDS 55.0%
CATACGAAGGGACCGGCAAG+GGG + chr5.4:36091651-36091670 None:intergenic 60.0%
GGTGGTGTGGTCCTTAGCCT+TGG - chr5.4:36091176-36091195 MS.gene98064:CDS 60.0%
TGCAGCAGCTGATGCTGTCC+AGG - chr5.4:36092853-36092872 MS.gene98064:intron 60.0%
!! GAGAGCAAGGGAGGTGCCAT+AGG - chr5.4:36090668-36090687 MS.gene98064:CDS 60.0%
TGGAAGAGGCTGGGCCTTGC+TGG - chr5.4:36092769-36092788 MS.gene98064:intron 65.0%
AGAGGCTGGGCCTTGCTGGC+TGG - chr5.4:36092773-36092792 MS.gene98064:intron 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 36090656 36093251 36090656 ID=MS.gene98064
chr5.4 mRNA 36090656 36093251 36090656 ID=MS.gene98064.t1;Parent=MS.gene98064
chr5.4 exon 36093015 36093251 36093015 ID=MS.gene98064.t1.exon1;Parent=MS.gene98064.t1
chr5.4 CDS 36093015 36093251 36093015 ID=cds.MS.gene98064.t1;Parent=MS.gene98064.t1
chr5.4 exon 36092626 36092764 36092626 ID=MS.gene98064.t1.exon2;Parent=MS.gene98064.t1
chr5.4 CDS 36092626 36092764 36092626 ID=cds.MS.gene98064.t1;Parent=MS.gene98064.t1
chr5.4 exon 36092296 36092470 36092296 ID=MS.gene98064.t1.exon3;Parent=MS.gene98064.t1
chr5.4 CDS 36092296 36092470 36092296 ID=cds.MS.gene98064.t1;Parent=MS.gene98064.t1
chr5.4 exon 36091704 36091729 36091704 ID=MS.gene98064.t1.exon4;Parent=MS.gene98064.t1
chr5.4 CDS 36091704 36091729 36091704 ID=cds.MS.gene98064.t1;Parent=MS.gene98064.t1
chr5.4 exon 36091512 36091612 36091512 ID=MS.gene98064.t1.exon5;Parent=MS.gene98064.t1
chr5.4 CDS 36091512 36091612 36091512 ID=cds.MS.gene98064.t1;Parent=MS.gene98064.t1
chr5.4 exon 36091033 36091407 36091033 ID=MS.gene98064.t1.exon6;Parent=MS.gene98064.t1
chr5.4 CDS 36091033 36091407 36091033 ID=cds.MS.gene98064.t1;Parent=MS.gene98064.t1
chr5.4 exon 36090656 36090811 36090656 ID=MS.gene98064.t1.exon7;Parent=MS.gene98064.t1
chr5.4 CDS 36090656 36090811 36090656 ID=cds.MS.gene98064.t1;Parent=MS.gene98064.t1
Gene Sequence

>MS.gene98064

ATGTATTTGGTGGAGAGCAAGGGAGGTGCCATAGGGTGCATGCTGTTGGCTCTTTTCTTCTTAGGGACATGGCCTGCTGTATTGACTCTGTTAGAAAGGCGAGGCCGTCTTCCACAGCATACCTACCTTGATTACTCAATCACCAATTTCTTGGCTGCTATTATCATTGCTTTTACATTTGGTCAGATAGGAAATGGGACAGTTGATGAGCCAAATTTCTTAACTCAACTTGCTCAGGTTCGGCTATTCATTCTATTCTTCACTTGTTTCATCGTAATGGTTCAAATCCTTCAAAACACGGACACCTGAAATGATATTAACACTGATACGCAGACGTACTGAGAATAAATTGATTTTGAAATATTGGGGAAATTTGAAGGTTTGAGTATTTTATTCAATATCTAACTATAGACATATCATTTGTGCTGAGTTTAATTATTATTATCTTTGAACTAATTTAACAATCTTCATAAATTGTTACTTGCAGGATAATTGGCCCTCAGTAATGTTTGCAATGGTAGGTGGTGTGGTCCTTAGCCTTGGGAATCTGTCCACACAGTATGCATTTGCTCTAGTTGGGCTGTCGGTTACCGAAGTGATTACAGCAAGCATAACCGTTGTTATAGGTATCTCACCGACATAATCAATAGAAAATTATTAAATTACTAAACAAGTTATACAACAATTTAGTTATATATAGAATGAATACTAAATAAAATGTGCCCTTCAACATAATCCAGTATTGAATTCTACTGTATTAACTTTGTTCAATTTGTCACAGGCACAACCTTAAATTACTTTTTGGATGACAAAATCAATAAAGCTGAGATTCTTTTCCCTGGAGTTGGTTGTTTTTTGGTTGCGGTTTGTCTAGGCTCTGCTGTTCATGCATCTAATACTGCCGATAATCAAGCTAAGCTCAAGGATTTTTCAAGTCATCATAATGATGCATCCTTGTATGTATTGTGTGCTTACATTTTGTCTATTTAACTCCCCTTGCCGGTCCCTTCGTATGATTATCAACTTGCTTTGAACACTGTATACTAACTTTCTACGTTATGCCTTTTCCTTTTAAAAAAGAGAAAGAAAAGTCGCTTATTTACACACTGTTTAGAAACAGAAATAGGAATTGCCACTTTGGGAACTATCATAGCTAGCTACTGTGTAAATAATTCTTTCTAAAGGTGATTCTCAGAGAAGAATAAGCAACGAGCATACGACCAGCTCAATCACTTTTATAAGTAGTACCTCCAAAATAAAGGGAACTCTTTTATCCAAACTCCTTTTCTCTTCTCCAATGAATCATAACTCATTAACATTTGATTGTTACTGCTGATAAAGAGGTGTGCAAAAGTACTTCATCTAGTTCTGAATTTCAGTTGCTGAGTGCGGAATTTGTGTTTATGGTTGTTTATGTTCTCTGCCTTGTAATTTATAGTTTCAATTTGATTGTAGTTTTGTCTTCTTTTGTTATATAAATCTGGTAGGGTATTGCTAATTCTATCAGAAACTGTTTTGCCAGGGACTCTTTGAAAGAAGGAAACATAGGTAAGAACCTCCAACAAGGTTCAACTTAAAGGATTGCTTCATTGGACTATATGCTAATTTGTTTCCTACCTTTTCAATGTTTAAATAATAGTTAAATCGAAGGATCTTGAAAGTGGAAGCAATTCTGCGGAAAAATTGAAAGCAGGAACCGCAGTTTTTCTCATAGAGAATGAGAACAGAAGAGCTATTAAGGTATGTGACAATAATTTGTCATACATGTATTGTGTTATTGAATGATACTTCAAACAAGAATTATGTAGTGTGTCACATGTCTTACTCTTAAAGTTCTGCCGCAGGTTTTCGGGAAAAGACCTTTGATTGGGTTAACCATAGTTTTCTTCGCTGGAATCTGCTTTTCTTTGTTTTCACCAGCATTCAACTTAGCAACAAATGACCAGTGGCACAGTTTAAAAAAAGGGATTCCCCATCTGAATGTTTACACCGCCTTCTTCTATTTTTCAGTATCTTGTTTTGTTATCGGAATAATTCTAAACATCATTTTCCTTTACCACCCTGTCTTGAACTTACCCAAGTCATCATTAACAAATTATTTGGGAGACTGGAATGGAAGAGGCTGGGCCTTGCTGGCTGGTTTCCTTTGTGGATTTGGGAATGGCCTTCAGTTTATGGGAGGTCAAGCTGCTGGATATGCAGCAGCTGATGCTGTCCAGGTGAGTTTAACAAGATTTTGCATTATCTGCGTAAATTAGTTTTACGCCGATATTTAATGAGAACTCGTCATTGCCATATAGGCCAACTTTGTAATCACAATTTTCATAGTGTCAAACGAAGTCAAACGGCACCTAATTTTCTCAATATATCTAACATATGTGTGTTCAGATTTCAATGAATTATTGAATAATTTCTTCATTTGAATGCATTGATGAAACAGGCACTTCCACTTGTGAGCACTTTTTGGGGAATTGTTTTGTTTGGAGAATATAGGAAATCATCAGGAAGAACATATATCTTACTGGGGAGTATGTTGTTTATGTTTATTGTGGCTGTTGGTGTGCTCATGGCATCATCAGGGCACAGGAAACATTGA

Protein sequence

>MS.gene98064.t1

MYLVESKGGAIGCMLLALFFLGTWPAVLTLLERRGRLPQHTYLDYSITNFLAAIIIAFTFGQIGNGTVDEPNFLTQLAQDNWPSVMFAMVGGVVLSLGNLSTQYAFALVGLSVTEVITASITVVIGTTLNYFLDDKINKAEILFPGVGCFLVAVCLGSAVHASNTADNQAKLKDFSSHHNDASLDSLKEGNIVKSKDLESGSNSAEKLKAGTAVFLIENENRRAIKVFGKRPLIGLTIVFFAGICFSLFSPAFNLATNDQWHSLKKGIPHLNVYTAFFYFSVSCFVIGIILNIIFLYHPVLNLPKSSLTNYLGDWNGRGWALLAGFLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGIVLFGEYRKSSGRTYILLGSMLFMFIVAVGVLMASSGHRKH