Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054723.t1 | XP_003614161.1 | 99.8 | 405 | 1 | 0 | 1 | 405 | 1 | 405 | 4.50E-221 | 776.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054723.t1 | Q9ZPR4 | 64.6 | 396 | 130 | 4 | 17 | 404 | 27 | 420 | 3.2e-127 | 456.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054723.t1 | G7JZ40 | 99.8 | 405 | 1 | 0 | 1 | 405 | 1 | 405 | 3.2e-221 | 776.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054723 | MS.gene067486 | PPI |
| MS.gene92350 | MS.gene054723 | PPI |
| MS.gene90371 | MS.gene054723 | PPI |
| MS.gene054723 | MS.gene024949 | PPI |
| MS.gene054723 | MS.gene90372 | PPI |
| MS.gene054723 | MS.gene046935 | PPI |
| MS.gene054723 | MS.gene40181 | PPI |
| MS.gene054723 | MS.gene83528 | PPI |
| MS.gene054723 | MS.gene071246 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054723.t1 | MTR_5g045590 | 99.753 | 405 | 1 | 0 | 1 | 405 | 1 | 405 | 0.0 | 830 |
| MS.gene054723.t1 | MTR_2g105270 | 52.941 | 425 | 152 | 5 | 20 | 404 | 31 | 447 | 4.69e-143 | 415 |
| MS.gene054723.t1 | MTR_2g105270 | 53.714 | 350 | 114 | 5 | 20 | 329 | 31 | 372 | 1.67e-108 | 325 |
| MS.gene054723.t1 | MTR_2g105270 | 51.940 | 335 | 113 | 5 | 20 | 314 | 31 | 357 | 6.73e-98 | 296 |
| MS.gene054723.t1 | MTR_5g005240 | 40.092 | 434 | 207 | 8 | 19 | 403 | 14 | 443 | 4.30e-96 | 295 |
| MS.gene054723.t1 | MTR_8g088670 | 39.900 | 401 | 182 | 9 | 32 | 403 | 50 | 420 | 2.50e-83 | 261 |
| MS.gene054723.t1 | MTR_1g040495 | 39.370 | 381 | 181 | 7 | 40 | 400 | 15 | 365 | 1.10e-79 | 250 |
| MS.gene054723.t1 | MTR_1g076210 | 40.806 | 397 | 187 | 6 | 31 | 403 | 16 | 388 | 7.43e-75 | 238 |
| MS.gene054723.t1 | MTR_1g093280 | 40.806 | 397 | 187 | 6 | 31 | 403 | 16 | 388 | 7.43e-75 | 238 |
| MS.gene054723.t1 | MTR_8g094880 | 36.952 | 433 | 198 | 10 | 22 | 405 | 18 | 424 | 9.11e-75 | 239 |
| MS.gene054723.t1 | MTR_8g094905 | 36.952 | 433 | 198 | 10 | 22 | 405 | 18 | 424 | 9.11e-75 | 239 |
| MS.gene054723.t1 | MTR_1g106065 | 34.988 | 423 | 227 | 8 | 22 | 403 | 3 | 418 | 1.25e-74 | 238 |
| MS.gene054723.t1 | MTR_7g096170 | 38.619 | 391 | 194 | 6 | 32 | 400 | 17 | 383 | 9.24e-71 | 228 |
| MS.gene054723.t1 | MTR_7g096170 | 40.395 | 354 | 166 | 5 | 32 | 364 | 17 | 346 | 9.47e-66 | 214 |
| MS.gene054723.t1 | MTR_8g088670 | 39.490 | 314 | 135 | 7 | 32 | 318 | 50 | 335 | 9.14e-60 | 197 |
| MS.gene054723.t1 | MTR_8g088670 | 40.323 | 310 | 130 | 7 | 32 | 314 | 50 | 331 | 1.12e-59 | 197 |
| MS.gene054723.t1 | MTR_7g096170 | 40.252 | 318 | 145 | 5 | 32 | 328 | 17 | 310 | 7.17e-54 | 181 |
| MS.gene054723.t1 | MTR_7g096170 | 39.850 | 266 | 135 | 4 | 136 | 400 | 45 | 286 | 8.83e-45 | 157 |
| MS.gene054723.t1 | MTR_1g040475 | 40.796 | 201 | 103 | 3 | 27 | 211 | 4 | 204 | 1.13e-33 | 125 |
| MS.gene054723.t1 | MTR_1g076220 | 34.052 | 232 | 91 | 5 | 176 | 403 | 54 | 227 | 3.49e-30 | 116 |
| MS.gene054723.t1 | MTR_1g093370 | 42.105 | 133 | 69 | 3 | 275 | 403 | 37 | 165 | 5.13e-24 | 98.2 |
| MS.gene054723.t1 | MTR_2g059110 | 46.753 | 77 | 41 | 0 | 31 | 107 | 8 | 84 | 3.98e-17 | 76.6 |
| MS.gene054723.t1 | MTR_2g059120 | 53.968 | 63 | 29 | 0 | 45 | 107 | 20 | 82 | 2.36e-14 | 68.9 |
| MS.gene054723.t1 | MTR_2g100150 | 36.667 | 150 | 77 | 5 | 36 | 181 | 12 | 147 | 4.58e-14 | 70.1 |
| MS.gene054723.t1 | MTR_1g040455 | 36.264 | 91 | 57 | 1 | 314 | 403 | 7 | 97 | 8.35e-14 | 67.4 |
| MS.gene054723.t1 | MTR_1g055050 | 42.991 | 107 | 58 | 2 | 121 | 225 | 33 | 138 | 2.82e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054723.t1 | AT2G03620 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 5.69e-165 | 469 |
| MS.gene054723.t1 | AT2G03620 | 64.394 | 396 | 131 | 4 | 17 | 404 | 27 | 420 | 5.69e-165 | 469 |
| MS.gene054723.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 5.32e-148 | 427 |
| MS.gene054723.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 5.32e-148 | 427 |
| MS.gene054723.t1 | AT1G16010 | 55.802 | 405 | 148 | 4 | 28 | 404 | 40 | 441 | 5.32e-148 | 427 |
| MS.gene054723.t1 | AT1G80900 | 52.955 | 423 | 149 | 4 | 20 | 404 | 32 | 442 | 6.00e-148 | 427 |
| MS.gene054723.t1 | AT1G80900 | 52.955 | 423 | 149 | 4 | 20 | 404 | 32 | 442 | 6.00e-148 | 427 |
| MS.gene054723.t1 | AT5G09690 | 40.657 | 396 | 192 | 4 | 26 | 403 | 25 | 395 | 2.44e-89 | 276 |
| MS.gene054723.t1 | AT5G09690 | 40.657 | 396 | 192 | 4 | 26 | 403 | 14 | 384 | 2.72e-89 | 275 |
| MS.gene054723.t1 | AT3G19640 | 41.096 | 438 | 184 | 11 | 40 | 403 | 46 | 483 | 2.77e-89 | 278 |
| MS.gene054723.t1 | AT5G09690 | 41.144 | 367 | 173 | 4 | 26 | 375 | 25 | 365 | 1.88e-83 | 260 |
| MS.gene054723.t1 | AT3G58970 | 37.750 | 400 | 200 | 7 | 32 | 403 | 56 | 434 | 3.90e-78 | 248 |
| MS.gene054723.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 1.34e-72 | 230 |
| MS.gene054723.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.43e-72 | 231 |
| MS.gene054723.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 1.43e-72 | 231 |
| MS.gene054723.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 2.40e-72 | 229 |
| MS.gene054723.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 25 | 329 | 2.80e-72 | 230 |
| MS.gene054723.t1 | AT5G09690 | 42.424 | 330 | 148 | 3 | 26 | 338 | 14 | 318 | 2.80e-72 | 229 |
| MS.gene054723.t1 | AT5G64560 | 39.440 | 393 | 183 | 6 | 40 | 403 | 26 | 392 | 6.07e-68 | 220 |
| MS.gene054723.t1 | AT5G09690 | 36.111 | 396 | 195 | 6 | 26 | 403 | 14 | 369 | 1.91e-67 | 218 |
| MS.gene054723.t1 | AT5G64560 | 40.111 | 359 | 161 | 5 | 40 | 370 | 26 | 358 | 1.64e-61 | 203 |
| MS.gene054723.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 14 | 224 | 2.89e-53 | 179 |
| MS.gene054723.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 4.14e-53 | 179 |
| MS.gene054723.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 4.14e-53 | 179 |
| MS.gene054723.t1 | AT5G09690 | 46.047 | 215 | 95 | 2 | 26 | 223 | 25 | 235 | 4.14e-53 | 179 |
| MS.gene054723.t1 | AT4G28580 | 31.579 | 399 | 214 | 6 | 29 | 403 | 44 | 407 | 1.98e-51 | 177 |
| MS.gene054723.t1 | AT5G09720 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 6.50e-47 | 162 |
| MS.gene054723.t1 | AT5G09720 | 39.427 | 279 | 138 | 8 | 36 | 301 | 16 | 276 | 6.50e-47 | 162 |
Find 91 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATCTTCCCTTTGAATTT+AGG | 0.088653 | 5.3:+33006088 | MS.gene054723:CDS |
| TGATCTTCCCTTTGAATTTA+GGG | 0.214507 | 5.3:+33006089 | MS.gene054723:CDS |
| GCCGCCGTGGCAGGAGTATT+TGG | 0.234108 | 5.3:+33007632 | MS.gene054723:CDS |
| TTCTGGATTCAATTTGGTTT+TGG | 0.248178 | 5.3:+33007688 | MS.gene054723:CDS |
| CTACTCTTCTGGATTCAATT+TGG | 0.249380 | 5.3:+33007682 | MS.gene054723:CDS |
| ATTTATCCTTCTTCCATATT+AGG | 0.249449 | 5.3:+33005599 | MS.gene054723:CDS |
| AGCCATCTCCCTTCCTAATA+TGG | 0.295338 | 5.3:-33005612 | None:intergenic |
| TTCTAGAGATCTTCGACTAT+TGG | 0.307849 | 5.3:+33005565 | MS.gene054723:CDS |
| TCCCTTTGAATTTAGGGCTC+TGG | 0.324784 | 5.3:+33006095 | MS.gene054723:CDS |
| GAACGTGTTCGAAGATTTAA+AGG | 0.326254 | 5.3:+33006835 | MS.gene054723:CDS |
| TTCCATGACCTCTCTGCTTC+AGG | 0.330823 | 5.3:-33005454 | None:intergenic |
| AATCGCAGGGCTGGTATAAA+AGG | 0.334220 | 5.3:+33005431 | MS.gene054723:CDS |
| GAAGCATCTCAAACTTTATC+AGG | 0.362455 | 5.3:-33007577 | None:intergenic |
| ATTGGAAATTCAAGTAAATA+TGG | 0.367253 | 5.3:+33007198 | MS.gene054723:CDS |
| GAAGAAGGATAAATGAATTT+CGG | 0.372060 | 5.3:-33005590 | None:intergenic |
| ATCTATCAGTACTCTCCTTC+TGG | 0.372524 | 5.3:+33006813 | MS.gene054723:CDS |
| AGTAAATATGGTAGTTCAAC+GGG | 0.377045 | 5.3:+33007210 | MS.gene054723:CDS |
| CCAAGGACTTTCAGCGGCAT+TGG | 0.377986 | 5.3:+33007180 | MS.gene054723:CDS |
| GCAATATTTGCCGCCGTGGC+AGG | 0.398522 | 5.3:+33007623 | MS.gene054723:CDS |
| ATGCACATCTTTAGATTCTC+AGG | 0.428704 | 5.3:+33006137 | MS.gene054723:CDS |
| ATATCCCGTGCTAGATGAAC+TGG | 0.441183 | 5.3:+33006786 | MS.gene054723:CDS |
| ATTTGAAAACAATCATTTGA+AGG | 0.441921 | 5.3:-33007078 | None:intergenic |
| TTTCAAATTCGTTCACCATC+AGG | 0.446404 | 5.3:+33007093 | MS.gene054723:CDS |
| GAGGTCATGGAAGTCGGTCT+TGG | 0.450393 | 5.3:+33005465 | MS.gene054723:CDS |
| TTGTCAACCTTGAACAAATC+CGG | 0.460150 | 5.3:+33005639 | MS.gene054723:CDS |
| GATTTGACAGGTAAATGAAC+TGG | 0.464980 | 5.3:+33006753 | MS.gene054723:intron |
| CCAATGCCGCTGAAAGTCCT+TGG | 0.466774 | 5.3:-33007180 | None:intergenic |
| TAGGGCTCTGGAGTTAGCTC+TGG | 0.466890 | 5.3:+33006107 | MS.gene054723:CDS |
| GTATCTAAAATAGAATAGTA+AGG | 0.476408 | 5.3:-33007747 | None:intergenic |
| TTTGACTCAGCGAGTTCAAA+AGG | 0.483080 | 5.3:+33006870 | MS.gene054723:CDS |
| TTAACAGGCAAGCGAATCGC+AGG | 0.485254 | 5.3:+33005417 | MS.gene054723:CDS |
| TCACCAGAGCGGTCACTTAG+TGG | 0.486329 | 5.3:+33007144 | MS.gene054723:CDS |
| CTCCAGAGCCCTAAATTCAA+AGG | 0.486570 | 5.3:-33006097 | None:intergenic |
| GGCCTGAAGCAGAGAGGTCA+TGG | 0.488760 | 5.3:+33005452 | MS.gene054723:CDS |
| ATGGTACTGTTGGTCGGTAC+AGG | 0.489528 | 5.3:+33005705 | MS.gene054723:CDS |
| TCCAGAGCCCTAAATTCAAA+GGG | 0.491102 | 5.3:-33006096 | None:intergenic |
| TTATACACCGGATTTGTTCA+AGG | 0.499716 | 5.3:-33005646 | None:intergenic |
| TCCCTTCCTAATATGGAAGA+AGG | 0.500264 | 5.3:-33005605 | None:intergenic |
| AATAGTCGAAGATCTCTAGA+AGG | 0.505041 | 5.3:-33005563 | None:intergenic |
| AGTGACCGCTCTGGTGAAGT+AGG | 0.509078 | 5.3:-33007138 | None:intergenic |
| GTGACCGCTCTGGTGAAGTA+GGG | 0.510030 | 5.3:-33007137 | None:intergenic |
| ACAGGACAATATTATGCAAT+CGG | 0.514813 | 5.3:+33005723 | MS.gene054723:CDS |
| TCCTTCTTCCATATTAGGAA+GGG | 0.517517 | 5.3:+33005604 | MS.gene054723:CDS |
| ATCCTTCTTCCATATTAGGA+AGG | 0.519036 | 5.3:+33005603 | MS.gene054723:CDS |
| ACAGGTAAATGAACTGGAGA+TGG | 0.521690 | 5.3:+33006759 | MS.gene054723:intron |
| TGATGAAATAGAACATCTCA+TGG | 0.526083 | 5.3:+33006993 | MS.gene054723:CDS |
| AGGCAAGCGAATCGCAGGGC+TGG | 0.527115 | 5.3:+33005422 | MS.gene054723:CDS |
| CTTGTCAAGTGTCACAATCT+CGG | 0.527722 | 5.3:-33005513 | None:intergenic |
| AAAATCAGACTCATGTAGAC+TGG | 0.529022 | 5.3:-33005396 | None:intergenic |
| AGATGTGTCTGACTGAGAAA+AGG | 0.536746 | 5.3:+33007037 | MS.gene054723:CDS |
| TCAGCCGCTAGAAATGTTGC+TGG | 0.537626 | 5.3:+33007257 | MS.gene054723:CDS |
| AAGTAAATATGGTAGTTCAA+CGG | 0.547346 | 5.3:+33007209 | MS.gene054723:CDS |
| TCTTACAGCAGCCACATTGG+TGG | 0.559109 | 5.3:+33007598 | MS.gene054723:CDS |
| GGCCGCAATATTTGCCGCCG+TGG | 0.566381 | 5.3:+33007619 | MS.gene054723:CDS |
| AGCCCACTAAGTGACCGCTC+TGG | 0.568756 | 5.3:-33007147 | None:intergenic |
| CACCAGAGCGGTCACTTAGT+GGG | 0.569271 | 5.3:+33007145 | MS.gene054723:CDS |
| GCATCTCAAACTTTATCAGG+AGG | 0.575972 | 5.3:-33007574 | None:intergenic |
| TTCCATATTAGGAAGGGAGA+TGG | 0.579126 | 5.3:+33005610 | MS.gene054723:CDS |
| GTGGGCTTCAGATGTTGCCA+AGG | 0.580454 | 5.3:+33007163 | MS.gene054723:CDS |
| TGCCACGGCGGCAAATATTG+CGG | 0.584897 | 5.3:-33007621 | None:intergenic |
| CGAGATTGTGACACTTGACA+AGG | 0.585644 | 5.3:+33005514 | MS.gene054723:CDS |
| GCTTCTTACAGCAGCCACAT+TGG | 0.587792 | 5.3:+33007595 | MS.gene054723:CDS |
| TACTCTCAACACATTATCGT+CGG | 0.589716 | 5.3:+33007305 | MS.gene054723:CDS |
| TGAGGCCAGTTCATCTAGCA+CGG | 0.589991 | 5.3:-33006791 | None:intergenic |
| AGCAGAGAGGTCATGGAAGT+CGG | 0.592681 | 5.3:+33005459 | MS.gene054723:CDS |
| AATTCACTCGATGGTACTGT+TGG | 0.598242 | 5.3:+33005695 | MS.gene054723:CDS |
| GAGGCCAGTTCATCTAGCAC+GGG | 0.606072 | 5.3:-33006790 | None:intergenic |
| CATGGATGACGATGGTGACA+TGG | 0.607118 | 5.3:+33007011 | MS.gene054723:CDS |
| ATCTTCGAACACGTTCCAGA+AGG | 0.609844 | 5.3:-33006828 | None:intergenic |
| ATTCATGAGGATGACTTCAT+CGG | 0.612801 | 5.3:-33005675 | None:intergenic |
| CATTCCAAATACTCCTGCCA+CGG | 0.614342 | 5.3:-33007636 | None:intergenic |
| GAACTCGCTGAGTCAAAGCA+AGG | 0.614782 | 5.3:-33006864 | None:intergenic |
| TGACCGCTCTGGTGAAGTAG+GGG | 0.617312 | 5.3:-33007136 | None:intergenic |
| CACTCGATGGTACTGTTGGT+CGG | 0.617891 | 5.3:+33005699 | MS.gene054723:CDS |
| GTTCATCTGATAACACAGAA+AGG | 0.620976 | 5.3:+33007232 | MS.gene054723:CDS |
| TTTGAAATCACTCTACCTGA+TGG | 0.628200 | 5.3:-33007108 | None:intergenic |
| TAACAGGCAAGCGAATCGCA+GGG | 0.633785 | 5.3:+33005418 | MS.gene054723:CDS |
| TACCATCGAGTGAATTCATG+AGG | 0.638527 | 5.3:-33005688 | None:intergenic |
| TGAGATGTTCTATTTCATCA+CGG | 0.640698 | 5.3:-33006990 | None:intergenic |
| ATCCTCATGAATTCACTCGA+TGG | 0.641599 | 5.3:+33005686 | MS.gene054723:CDS |
| AAGGAGAGTACTGATAGATG+AGG | 0.645637 | 5.3:-33006809 | None:intergenic |
| CAAAGAATATATTGACGACA+CGG | 0.646192 | 5.3:+33007417 | MS.gene054723:CDS |
| AAATATTGCGGCCACCAATG+TGG | 0.649069 | 5.3:-33007609 | None:intergenic |
| TCCAAATACTCCTGCCACGG+CGG | 0.649365 | 5.3:-33007633 | None:intergenic |
| ATGTTGCCAAGGACTTTCAG+CGG | 0.651077 | 5.3:+33007174 | MS.gene054723:CDS |
| GCTTCCAGCAACATTTCTAG+CGG | 0.661159 | 5.3:-33007261 | None:intergenic |
| CATCGGCAGTGATTATACAC+CGG | 0.664675 | 5.3:-33005658 | None:intergenic |
| GAACATCTCATGGATGACGA+TGG | 0.697862 | 5.3:+33007003 | MS.gene054723:CDS |
| AATGCAATGGAAGAAACACA+AGG | 0.739174 | 5.3:+33005359 | None:intergenic |
| ATAAAAGGCCTGAAGCAGAG+AGG | 0.740166 | 5.3:+33005446 | MS.gene054723:CDS |
| CAGCCCCTACTTCACCAGAG+CGG | 0.766346 | 5.3:+33007133 | MS.gene054723:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATATGTTATATTAATA+AGG | + | chr5.3:33006725-33006744 | MS.gene054723:intron | 10.0% |
| !! | AAGAAAGAGAATTATAATTA+AGG | - | chr5.3:33006918-33006937 | None:intergenic | 15.0% |
| !! | AGCATACATAATATTTATAT+CGG | + | chr5.3:33005803-33005822 | MS.gene054723:intron | 15.0% |
| !! | CATTATGTTTACATTAAAAT+TGG | + | chr5.3:33006237-33006256 | MS.gene054723:intron | 15.0% |
| !! | TTATAATATATAGTGACAAA+AGG | - | chr5.3:33007494-33007513 | None:intergenic | 15.0% |
| !!! | AATTTTATTAAAAAGACATC+AGG | - | chr5.3:33006560-33006579 | None:intergenic | 15.0% |
| !! | ATTGGAAATTCAAGTAAATA+TGG | + | chr5.3:33007198-33007217 | MS.gene054723:CDS | 20.0% |
| !! | ATTTGAAAACAATCATTTGA+AGG | - | chr5.3:33007081-33007100 | None:intergenic | 20.0% |
| !! | CTAAATACATAATAAGTCAT+TGG | + | chr5.3:33006663-33006682 | MS.gene054723:intron | 20.0% |
| !! | GTAACTTATATTTAGTTATC+AGG | + | chr5.3:33006966-33006985 | MS.gene054723:intron | 20.0% |
| !! | TGAAAAATTTACAAGATTTC+AGG | - | chr5.3:33006398-33006417 | None:intergenic | 20.0% |
| !!! | AGATTTTCTCAACATAAAAT+TGG | + | chr5.3:33007441-33007460 | MS.gene054723:CDS | 20.0% |
| !!! | GTATCTAAAATAGAATAGTA+AGG | - | chr5.3:33007750-33007769 | None:intergenic | 20.0% |
| ! | AAATATAAGTTACTAGTTGC+AGG | - | chr5.3:33006959-33006978 | None:intergenic | 25.0% |
| ! | AAGTAAATATGGTAGTTCAA+CGG | + | chr5.3:33007209-33007228 | MS.gene054723:CDS | 25.0% |
| ! | ATTGATGTCTTGTGAAAATA+TGG | - | chr5.3:33006701-33006720 | None:intergenic | 25.0% |
| ! | ATTTATCCTTCTTCCATATT+AGG | + | chr5.3:33005599-33005618 | MS.gene054723:CDS | 25.0% |
| ! | CAGATAGATTGAAAAGTTTA+TGG | - | chr5.3:33007534-33007553 | None:intergenic | 25.0% |
| ! | GAAGAAGGATAAATGAATTT+CGG | - | chr5.3:33005593-33005612 | None:intergenic | 25.0% |
| ! | TTCACTTTGATGAAAATAGA+AGG | + | chr5.3:33006414-33006433 | MS.gene054723:intron | 25.0% |
| !! | CATTTTCATTAAACATCCTA+TGG | + | chr5.3:33006318-33006337 | MS.gene054723:intron | 25.0% |
| !! | TGATATCAGTGTTTGAATTT+TGG | + | chr5.3:33006595-33006614 | MS.gene054723:intron | 25.0% |
| !! | TTTTCAATCTATCTGTTACA+GGG | + | chr5.3:33007539-33007558 | MS.gene054723:intron | 25.0% |
| AAAACAGTGTTTAGGCTTAA+CGG | + | chr5.3:33006368-33006387 | MS.gene054723:intron | 30.0% | |
| ACAGATTCAATGCAAAAATG+TGG | - | chr5.3:33006201-33006220 | None:intergenic | 30.0% | |
| ACAGGACAATATTATGCAAT+CGG | + | chr5.3:33005723-33005742 | MS.gene054723:CDS | 30.0% | |
| AGGGAGAGAATATAATGTTT+AGG | + | chr5.3:33006481-33006500 | MS.gene054723:intron | 30.0% | |
| AGTAAATATGGTAGTTCAAC+GGG | + | chr5.3:33007210-33007229 | MS.gene054723:CDS | 30.0% | |
| ATCAATGAAGATAAGCAATG+TGG | - | chr5.3:33007376-33007395 | None:intergenic | 30.0% | |
| ATGATCTTCCCTTTGAATTT+AGG | + | chr5.3:33006088-33006107 | MS.gene054723:CDS | 30.0% | |
| ATTGAAAAGTTTATGGTTCG+TGG | - | chr5.3:33007527-33007546 | None:intergenic | 30.0% | |
| CAAAGAATATATTGACGACA+CGG | + | chr5.3:33007417-33007436 | MS.gene054723:CDS | 30.0% | |
| GAAATCAGTAAGCAATTCTA+TGG | - | chr5.3:33006055-33006074 | None:intergenic | 30.0% | |
| GGATAAAAATTGATCAGGAT+GGG | + | chr5.3:33005486-33005505 | MS.gene054723:CDS | 30.0% | |
| GTCTTGGATAAAAATTGATC+AGG | + | chr5.3:33005481-33005500 | MS.gene054723:CDS | 30.0% | |
| TCAAACACTGATATCAAGTT+TGG | - | chr5.3:33006591-33006610 | None:intergenic | 30.0% | |
| TCAATGAAGATAAGCAATGT+GGG | - | chr5.3:33007375-33007394 | None:intergenic | 30.0% | |
| TGAGATGTTCTATTTCATCA+CGG | - | chr5.3:33006993-33007012 | None:intergenic | 30.0% | |
| TGATCTTCCCTTTGAATTTA+GGG | + | chr5.3:33006089-33006108 | MS.gene054723:CDS | 30.0% | |
| TGATGAAATAGAACATCTCA+TGG | + | chr5.3:33006993-33007012 | MS.gene054723:CDS | 30.0% | |
| TGGATAAAAATTGATCAGGA+TGG | + | chr5.3:33005485-33005504 | MS.gene054723:CDS | 30.0% | |
| ! | AATAAGGATCTTGATTTGAC+AGG | + | chr5.3:33006741-33006760 | MS.gene054723:intron | 30.0% |
| ! | ATAGTAGTGGAAGAATTATG+AGG | + | chr5.3:33005846-33005865 | MS.gene054723:intron | 30.0% |
| ! | CTTTTCAATCTATCTGTTAC+AGG | + | chr5.3:33007538-33007557 | MS.gene054723:intron | 30.0% |
| ! | TAGTAGTGGAAGAATTATGA+GGG | + | chr5.3:33005847-33005866 | MS.gene054723:intron | 30.0% |
| ! | TGAAATAGGATGTCTTTTGT+TGG | + | chr5.3:33005887-33005906 | MS.gene054723:intron | 30.0% |
| !! | TACATGAGTCTGATTTTAAC+AGG | + | chr5.3:33005402-33005421 | MS.gene054723:CDS | 30.0% |
| !! | TGACCAGAAACTTTACTTTT+TGG | + | chr5.3:33006167-33006186 | MS.gene054723:intron | 30.0% |
| !! | TTCTAGTTTACAGCAAAAAG+AGG | - | chr5.3:33005780-33005799 | None:intergenic | 30.0% |
| !! | TTCTGGATTCAATTTGGTTT+TGG | + | chr5.3:33007688-33007707 | MS.gene054723:CDS | 30.0% |
| !!! | AATTTGGTTTTGGTAGTTAC+TGG | + | chr5.3:33007698-33007717 | MS.gene054723:CDS | 30.0% |
| !!! | ACCAGAAACTTTACTTTTTG+GGG | + | chr5.3:33006169-33006188 | MS.gene054723:intron | 30.0% |
| !!! | GACCAGAAACTTTACTTTTT+GGG | + | chr5.3:33006168-33006187 | MS.gene054723:intron | 30.0% |
| AAAATCAGACTCATGTAGAC+TGG | - | chr5.3:33005399-33005418 | None:intergenic | 35.0% | |
| AATAGTCGAAGATCTCTAGA+AGG | - | chr5.3:33005566-33005585 | None:intergenic | 35.0% | |
| ACATTATCGTCGGTATGTAA+AGG | + | chr5.3:33007315-33007334 | MS.gene054723:intron | 35.0% | |
| AGAAGAGTAGTCAAAAACTG+AGG | - | chr5.3:33007672-33007691 | None:intergenic | 35.0% | |
| ATCCTTCTTCCATATTAGGA+AGG | + | chr5.3:33005603-33005622 | MS.gene054723:CDS | 35.0% | |
| ATCGGAATTGTAGCACTATT+AGG | + | chr5.3:33005821-33005840 | MS.gene054723:intron | 35.0% | |
| ATCTTCATTGATACTCTTGC+TGG | + | chr5.3:33007384-33007403 | MS.gene054723:intron | 35.0% | |
| ATGCACATCTTTAGATTCTC+AGG | + | chr5.3:33006137-33006156 | MS.gene054723:CDS | 35.0% | |
| ATTCATGAGGATGACTTCAT+CGG | - | chr5.3:33005678-33005697 | None:intergenic | 35.0% | |
| CAACTCACAAAACAGTGTTT+AGG | + | chr5.3:33006360-33006379 | MS.gene054723:intron | 35.0% | |
| CAGAGAGAAAAATCTGGTAA+GGG | + | chr5.3:33005749-33005768 | MS.gene054723:intron | 35.0% | |
| CTACTCTTCTGGATTCAATT+TGG | + | chr5.3:33007682-33007701 | MS.gene054723:CDS | 35.0% | |
| GAAATTGCAGGAAAAACCAT+AGG | - | chr5.3:33006337-33006356 | None:intergenic | 35.0% | |
| GAACGTGTTCGAAGATTTAA+AGG | + | chr5.3:33006835-33006854 | MS.gene054723:CDS | 35.0% | |
| GATTCAATGCAAAAATGTGG+AGG | - | chr5.3:33006198-33006217 | None:intergenic | 35.0% | |
| GATTTGACAGGTAAATGAAC+TGG | + | chr5.3:33006753-33006772 | MS.gene054723:intron | 35.0% | |
| GCACTATTAGGAAATAGTAG+TGG | + | chr5.3:33005833-33005852 | MS.gene054723:intron | 35.0% | |
| GTTCATCTGATAACACAGAA+AGG | + | chr5.3:33007232-33007251 | MS.gene054723:CDS | 35.0% | |
| TACTCTCAACACATTATCGT+CGG | + | chr5.3:33007305-33007324 | MS.gene054723:CDS | 35.0% | |
| TCCCCAAAAAGTAAAGTTTC+TGG | - | chr5.3:33006173-33006192 | None:intergenic | 35.0% | |
| TCCTTCTTCCATATTAGGAA+GGG | + | chr5.3:33005604-33005623 | MS.gene054723:CDS | 35.0% | |
| TGTAGCACTCAAGATATGTA+GGG | + | chr5.3:33006462-33006481 | MS.gene054723:intron | 35.0% | |
| TTGTAGCACTCAAGATATGT+AGG | + | chr5.3:33006461-33006480 | MS.gene054723:intron | 35.0% | |
| TTGTCAACCTTGAACAAATC+CGG | + | chr5.3:33005639-33005658 | MS.gene054723:CDS | 35.0% | |
| TTTCAAATTCGTTCACCATC+AGG | + | chr5.3:33007093-33007112 | MS.gene054723:CDS | 35.0% | |
| ! | GAAGCATCTCAAACTTTATC+AGG | - | chr5.3:33007580-33007599 | None:intergenic | 35.0% |
| ! | TTATACACCGGATTTGTTCA+AGG | - | chr5.3:33005649-33005668 | None:intergenic | 35.0% |
| ! | TTCTAGAGATCTTCGACTAT+TGG | + | chr5.3:33005565-33005584 | MS.gene054723:CDS | 35.0% |
| ! | TTTGAAATCACTCTACCTGA+TGG | - | chr5.3:33007111-33007130 | None:intergenic | 35.0% |
| !! | GTTTTGGTAGTTACTGGAAT+TGG | + | chr5.3:33007704-33007723 | MS.gene054723:CDS | 35.0% |
| !! | TCAGTTTTTGACTACTCTTC+TGG | + | chr5.3:33007671-33007690 | MS.gene054723:CDS | 35.0% |
| AATTCACTCGATGGTACTGT+TGG | + | chr5.3:33005695-33005714 | MS.gene054723:CDS | 40.0% | |
| ACAGGTAAATGAACTGGAGA+TGG | + | chr5.3:33006759-33006778 | MS.gene054723:intron | 40.0% | |
| AGAAGGCTGCTAAAATCTCT+AGG | + | chr5.3:33006431-33006450 | MS.gene054723:intron | 40.0% | |
| AGATGTGTCTGACTGAGAAA+AGG | + | chr5.3:33007037-33007056 | MS.gene054723:CDS | 40.0% | |
| ATCCTCATGAATTCACTCGA+TGG | + | chr5.3:33005686-33005705 | MS.gene054723:CDS | 40.0% | |
| ATCTATCAGTACTCTCCTTC+TGG | + | chr5.3:33006813-33006832 | MS.gene054723:CDS | 40.0% | |
| CCAGAGAGAAAAATCTGGTA+AGG | + | chr5.3:33005748-33005767 | MS.gene054723:intron | 40.0% | |
| CTTGTCAAGTGTCACAATCT+CGG | - | chr5.3:33005516-33005535 | None:intergenic | 40.0% | |
| GCATCTCAAACTTTATCAGG+AGG | - | chr5.3:33007577-33007596 | None:intergenic | 40.0% | |
| GTGGAAGAATTATGAGGGTA+CGG | + | chr5.3:33005852-33005871 | MS.gene054723:intron | 40.0% | |
| TACCATCGAGTGAATTCATG+AGG | - | chr5.3:33005691-33005710 | None:intergenic | 40.0% | |
| TCCAGAGCCCTAAATTCAAA+GGG | - | chr5.3:33006099-33006118 | None:intergenic | 40.0% | |
| TCCCTTCCTAATATGGAAGA+AGG | - | chr5.3:33005608-33005627 | None:intergenic | 40.0% | |
| TTCCATATTAGGAAGGGAGA+TGG | + | chr5.3:33005610-33005629 | MS.gene054723:CDS | 40.0% | |
| TTTGACTCAGCGAGTTCAAA+AGG | + | chr5.3:33006870-33006889 | MS.gene054723:CDS | 40.0% | |
| ! | CCTTACCAGATTTTTCTCTC+TGG | - | chr5.3:33005751-33005770 | None:intergenic | 40.0% |
| ! | GTTCAAAAGGTTGATCAACG+TGG | + | chr5.3:33006883-33006902 | MS.gene054723:intron | 40.0% |
| ! | TGTGAGTTGTCTGAAATTGC+AGG | - | chr5.3:33006349-33006368 | None:intergenic | 40.0% |
| !! | AAGGAGAGTACTGATAGATG+AGG | - | chr5.3:33006812-33006831 | None:intergenic | 40.0% |
| AAATATTGCGGCCACCAATG+TGG | - | chr5.3:33007612-33007631 | None:intergenic | 45.0% | |
| AGCCATCTCCCTTCCTAATA+TGG | - | chr5.3:33005615-33005634 | None:intergenic | 45.0% | |
| ATAAAAGGCCTGAAGCAGAG+AGG | + | chr5.3:33005446-33005465 | MS.gene054723:CDS | 45.0% | |
| ATATCCCGTGCTAGATGAAC+TGG | + | chr5.3:33006786-33006805 | MS.gene054723:CDS | 45.0% | |
| ATCTTCGAACACGTTCCAGA+AGG | - | chr5.3:33006831-33006850 | None:intergenic | 45.0% | |
| ATGTTGCCAAGGACTTTCAG+CGG | + | chr5.3:33007174-33007193 | MS.gene054723:CDS | 45.0% | |
| CATCGGCAGTGATTATACAC+CGG | - | chr5.3:33005661-33005680 | None:intergenic | 45.0% | |
| CATTCCAAATACTCCTGCCA+CGG | - | chr5.3:33007639-33007658 | None:intergenic | 45.0% | |
| CGAGATTGTGACACTTGACA+AGG | + | chr5.3:33005514-33005533 | MS.gene054723:CDS | 45.0% | |
| CTCCAGAGCCCTAAATTCAA+AGG | - | chr5.3:33006100-33006119 | None:intergenic | 45.0% | |
| GAACATCTCATGGATGACGA+TGG | + | chr5.3:33007003-33007022 | MS.gene054723:CDS | 45.0% | |
| ! | AATCGCAGGGCTGGTATAAA+AGG | + | chr5.3:33005431-33005450 | MS.gene054723:CDS | 45.0% |
| ! | GCTTCCAGCAACATTTCTAG+CGG | - | chr5.3:33007264-33007283 | None:intergenic | 45.0% |
| ! | GGCATTGAGTGGTGTGAAAT+AGG | + | chr5.3:33005873-33005892 | MS.gene054723:intron | 45.0% |
| ! | TCCCTTTGAATTTAGGGCTC+TGG | + | chr5.3:33006095-33006114 | MS.gene054723:CDS | 45.0% |
| AGCAGAGAGGTCATGGAAGT+CGG | + | chr5.3:33005459-33005478 | MS.gene054723:CDS | 50.0% | |
| ATGGTACTGTTGGTCGGTAC+AGG | + | chr5.3:33005705-33005724 | MS.gene054723:CDS | 50.0% | |
| CACTCGATGGTACTGTTGGT+CGG | + | chr5.3:33005699-33005718 | MS.gene054723:CDS | 50.0% | |
| CATGGATGACGATGGTGACA+TGG | + | chr5.3:33007011-33007030 | MS.gene054723:CDS | 50.0% | |
| CGGCTCCAGAGAGAAAAATC+TGG | + | chr5.3:33005743-33005762 | MS.gene054723:CDS | 50.0% | |
| GAACTCGCTGAGTCAAAGCA+AGG | - | chr5.3:33006867-33006886 | None:intergenic | 50.0% | |
| GCTTCTTACAGCAGCCACAT+TGG | + | chr5.3:33007595-33007614 | MS.gene054723:CDS | 50.0% | |
| TAACAGGCAAGCGAATCGCA+GGG | + | chr5.3:33005418-33005437 | MS.gene054723:CDS | 50.0% | |
| TCAGCCGCTAGAAATGTTGC+TGG | + | chr5.3:33007257-33007276 | MS.gene054723:CDS | 50.0% | |
| TCTTACAGCAGCCACATTGG+TGG | + | chr5.3:33007598-33007617 | MS.gene054723:CDS | 50.0% | |
| TGAGGCCAGTTCATCTAGCA+CGG | - | chr5.3:33006794-33006813 | None:intergenic | 50.0% | |
| TTAACAGGCAAGCGAATCGC+AGG | + | chr5.3:33005417-33005436 | MS.gene054723:CDS | 50.0% | |
| TTCCATGACCTCTCTGCTTC+AGG | - | chr5.3:33005457-33005476 | None:intergenic | 50.0% | |
| ! | TATGAGGGTACGGCATTGAG+TGG | + | chr5.3:33005862-33005881 | MS.gene054723:intron | 50.0% |
| AGTGACCGCTCTGGTGAAGT+AGG | - | chr5.3:33007141-33007160 | None:intergenic | 55.0% | |
| CACCAGAGCGGTCACTTAGT+GGG | + | chr5.3:33007145-33007164 | MS.gene054723:CDS | 55.0% | |
| CCAAGGACTTTCAGCGGCAT+TGG | + | chr5.3:33007180-33007199 | MS.gene054723:CDS | 55.0% | |
| CCAATGCCGCTGAAAGTCCT+TGG | - | chr5.3:33007183-33007202 | None:intergenic | 55.0% | |
| GAGGCCAGTTCATCTAGCAC+GGG | - | chr5.3:33006793-33006812 | None:intergenic | 55.0% | |
| GAGGTCATGGAAGTCGGTCT+TGG | + | chr5.3:33005465-33005484 | MS.gene054723:CDS | 55.0% | |
| GTGACCGCTCTGGTGAAGTA+GGG | - | chr5.3:33007140-33007159 | None:intergenic | 55.0% | |
| GTGGGCTTCAGATGTTGCCA+AGG | + | chr5.3:33007163-33007182 | MS.gene054723:CDS | 55.0% | |
| TCACCAGAGCGGTCACTTAG+TGG | + | chr5.3:33007144-33007163 | MS.gene054723:CDS | 55.0% | |
| TCCAAATACTCCTGCCACGG+CGG | - | chr5.3:33007636-33007655 | None:intergenic | 55.0% | |
| TGACCGCTCTGGTGAAGTAG+GGG | - | chr5.3:33007139-33007158 | None:intergenic | 55.0% | |
| TGCCACGGCGGCAAATATTG+CGG | - | chr5.3:33007624-33007643 | None:intergenic | 55.0% | |
| !! | TAGGGCTCTGGAGTTAGCTC+TGG | + | chr5.3:33006107-33006126 | MS.gene054723:CDS | 55.0% |
| AGCCCACTAAGTGACCGCTC+TGG | - | chr5.3:33007150-33007169 | None:intergenic | 60.0% | |
| CAGCCCCTACTTCACCAGAG+CGG | + | chr5.3:33007133-33007152 | MS.gene054723:CDS | 60.0% | |
| GCAATATTTGCCGCCGTGGC+AGG | + | chr5.3:33007623-33007642 | MS.gene054723:CDS | 60.0% | |
| GGCCTGAAGCAGAGAGGTCA+TGG | + | chr5.3:33005452-33005471 | MS.gene054723:CDS | 60.0% | |
| AGGCAAGCGAATCGCAGGGC+TGG | + | chr5.3:33005422-33005441 | MS.gene054723:CDS | 65.0% | |
| GGCCGCAATATTTGCCGCCG+TGG | + | chr5.3:33007619-33007638 | MS.gene054723:CDS | 65.0% | |
| !! | GCCGCCGTGGCAGGAGTATT+TGG | + | chr5.3:33007632-33007651 | MS.gene054723:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 33005365 | 33007790 | 33005365 | ID=MS.gene054723 |
| chr5.3 | mRNA | 33005365 | 33007790 | 33005365 | ID=MS.gene054723.t1;Parent=MS.gene054723 |
| chr5.3 | exon | 33005365 | 33005764 | 33005365 | ID=MS.gene054723.t1.exon1;Parent=MS.gene054723.t1 |
| chr5.3 | CDS | 33005365 | 33005764 | 33005365 | ID=cds.MS.gene054723.t1;Parent=MS.gene054723.t1 |
| chr5.3 | exon | 33006088 | 33006158 | 33006088 | ID=MS.gene054723.t1.exon2;Parent=MS.gene054723.t1 |
| chr5.3 | CDS | 33006088 | 33006158 | 33006088 | ID=cds.MS.gene054723.t1;Parent=MS.gene054723.t1 |
| chr5.3 | exon | 33006763 | 33006891 | 33006763 | ID=MS.gene054723.t1.exon3;Parent=MS.gene054723.t1 |
| chr5.3 | CDS | 33006763 | 33006891 | 33006763 | ID=cds.MS.gene054723.t1;Parent=MS.gene054723.t1 |
| chr5.3 | exon | 33006988 | 33007326 | 33006988 | ID=MS.gene054723.t1.exon4;Parent=MS.gene054723.t1 |
| chr5.3 | CDS | 33006988 | 33007326 | 33006988 | ID=cds.MS.gene054723.t1;Parent=MS.gene054723.t1 |
| chr5.3 | exon | 33007415 | 33007462 | 33007415 | ID=MS.gene054723.t1.exon5;Parent=MS.gene054723.t1 |
| chr5.3 | CDS | 33007415 | 33007462 | 33007415 | ID=cds.MS.gene054723.t1;Parent=MS.gene054723.t1 |
| chr5.3 | exon | 33007560 | 33007790 | 33007560 | ID=MS.gene054723.t1.exon6;Parent=MS.gene054723.t1 |
| chr5.3 | CDS | 33007560 | 33007790 | 33007560 | ID=cds.MS.gene054723.t1;Parent=MS.gene054723.t1 |
| Gene Sequence |
| Protein sequence |
