Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40181.t1 | XP_003610633.1 | 79.2 | 385 | 2 | 2 | 1 | 307 | 1 | 385 | 9.70E-152 | 546.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40181.t1 | Q9LJN2 | 60.5 | 382 | 46 | 3 | 31 | 307 | 44 | 425 | 7.6e-105 | 381.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40181.t1 | G7K0Y3 | 79.2 | 385 | 2 | 2 | 1 | 307 | 1 | 385 | 7.0e-152 | 546.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40181 | MS.gene83528 | PPI |
| MS.gene40181 | MS.gene071246 | PPI |
| MS.gene40181 | MS.gene40853 | PPI |
| MS.gene40181 | MS.gene067486 | PPI |
| MS.gene054723 | MS.gene40181 | PPI |
| MS.gene40181 | MS.gene90372 | PPI |
| MS.gene40181 | MS.gene063967 | PPI |
| MS.gene90371 | MS.gene40181 | PPI |
| MS.gene40181 | MS.gene063969 | PPI |
| MS.gene40181 | MS.gene98061 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40181.t1 | MTR_5g005240 | 98.261 | 230 | 2 | 1 | 1 | 228 | 1 | 230 | 1.28e-162 | 460 |
| MS.gene40181.t1 | MTR_5g005240 | 100.000 | 79 | 0 | 0 | 229 | 307 | 307 | 385 | 1.64e-45 | 160 |
| MS.gene40181.t1 | MTR_8g094880 | 48.732 | 355 | 119 | 4 | 15 | 307 | 15 | 368 | 1.31e-104 | 312 |
| MS.gene40181.t1 | MTR_8g094905 | 48.732 | 355 | 119 | 4 | 15 | 307 | 15 | 368 | 1.31e-104 | 312 |
| MS.gene40181.t1 | MTR_2g105270 | 47.175 | 354 | 120 | 4 | 21 | 307 | 39 | 392 | 1.13e-96 | 292 |
| MS.gene40181.t1 | MTR_1g106065 | 67.143 | 210 | 63 | 3 | 24 | 228 | 12 | 220 | 3.86e-89 | 272 |
| MS.gene40181.t1 | MTR_1g106065 | 56.322 | 87 | 35 | 1 | 221 | 307 | 279 | 362 | 7.44e-22 | 95.1 |
| MS.gene40181.t1 | MTR_2g105270 | 47.006 | 334 | 110 | 4 | 21 | 287 | 39 | 372 | 5.52e-89 | 272 |
| MS.gene40181.t1 | MTR_1g040495 | 45.513 | 312 | 137 | 4 | 24 | 306 | 5 | 312 | 7.30e-88 | 267 |
| MS.gene40181.t1 | MTR_1g076210 | 51.064 | 329 | 120 | 6 | 18 | 306 | 5 | 332 | 2.61e-87 | 266 |
| MS.gene40181.t1 | MTR_1g093280 | 51.064 | 329 | 120 | 6 | 18 | 306 | 5 | 332 | 2.61e-87 | 266 |
| MS.gene40181.t1 | MTR_2g105270 | 44.648 | 327 | 114 | 4 | 13 | 272 | 31 | 357 | 2.81e-79 | 245 |
| MS.gene40181.t1 | MTR_5g045590 | 40.805 | 348 | 137 | 4 | 12 | 307 | 19 | 349 | 3.56e-79 | 246 |
| MS.gene40181.t1 | MTR_8g088670 | 41.642 | 341 | 149 | 7 | 5 | 306 | 36 | 365 | 5.79e-79 | 246 |
| MS.gene40181.t1 | MTR_7g096170 | 45.141 | 319 | 142 | 5 | 21 | 306 | 12 | 330 | 1.48e-78 | 243 |
| MS.gene40181.t1 | MTR_7g096170 | 45.141 | 319 | 142 | 5 | 21 | 306 | 12 | 330 | 2.01e-78 | 244 |
| MS.gene40181.t1 | MTR_7g096170 | 45.973 | 298 | 128 | 5 | 21 | 285 | 12 | 309 | 7.74e-73 | 227 |
| MS.gene40181.t1 | MTR_8g088670 | 40.391 | 307 | 133 | 7 | 5 | 272 | 36 | 331 | 3.09e-63 | 204 |
| MS.gene40181.t1 | MTR_8g088670 | 40.468 | 299 | 138 | 7 | 5 | 269 | 36 | 328 | 8.06e-63 | 202 |
| MS.gene40181.t1 | MTR_1g040475 | 44.737 | 190 | 98 | 3 | 34 | 221 | 20 | 204 | 5.17e-44 | 150 |
| MS.gene40181.t1 | MTR_7g096170 | 43.348 | 233 | 100 | 4 | 107 | 307 | 2 | 234 | 7.53e-42 | 146 |
| MS.gene40181.t1 | MTR_2g100150 | 55.901 | 161 | 36 | 7 | 32 | 188 | 15 | 144 | 1.55e-40 | 139 |
| MS.gene40181.t1 | MTR_1g076220 | 53.600 | 125 | 50 | 2 | 185 | 306 | 53 | 172 | 3.38e-35 | 127 |
| MS.gene40181.t1 | MTR_1g055050 | 46.316 | 190 | 85 | 4 | 116 | 304 | 35 | 208 | 3.77e-32 | 120 |
| MS.gene40181.t1 | MTR_1g093370 | 54.000 | 100 | 38 | 2 | 210 | 306 | 16 | 110 | 2.48e-25 | 100 |
| MS.gene40181.t1 | MTR_2g059110 | 55.000 | 80 | 36 | 0 | 24 | 103 | 8 | 87 | 1.46e-23 | 92.8 |
| MS.gene40181.t1 | MTR_2g059120 | 62.121 | 66 | 25 | 0 | 38 | 103 | 20 | 85 | 2.28e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40181.t1 | AT3G19640 | 67.811 | 233 | 34 | 2 | 34 | 228 | 47 | 276 | 9.50e-99 | 299 |
| MS.gene40181.t1 | AT3G19640 | 73.529 | 102 | 26 | 1 | 206 | 307 | 325 | 425 | 5.51e-39 | 143 |
| MS.gene40181.t1 | AT1G16010 | 48.442 | 353 | 110 | 5 | 21 | 307 | 40 | 386 | 2.80e-98 | 296 |
| MS.gene40181.t1 | AT1G16010 | 48.442 | 353 | 110 | 5 | 21 | 307 | 40 | 386 | 2.80e-98 | 296 |
| MS.gene40181.t1 | AT1G16010 | 48.442 | 353 | 110 | 5 | 21 | 307 | 40 | 386 | 2.80e-98 | 296 |
| MS.gene40181.t1 | AT1G80900 | 48.138 | 349 | 118 | 4 | 21 | 307 | 40 | 387 | 5.26e-97 | 293 |
| MS.gene40181.t1 | AT1G80900 | 48.138 | 349 | 118 | 4 | 21 | 307 | 40 | 387 | 5.26e-97 | 293 |
| MS.gene40181.t1 | AT5G09690 | 49.845 | 323 | 123 | 3 | 17 | 306 | 23 | 339 | 1.51e-93 | 282 |
| MS.gene40181.t1 | AT5G09690 | 49.845 | 323 | 123 | 3 | 17 | 306 | 23 | 339 | 2.04e-93 | 283 |
| MS.gene40181.t1 | AT5G09690 | 49.845 | 323 | 123 | 3 | 17 | 306 | 12 | 328 | 2.30e-93 | 282 |
| MS.gene40181.t1 | AT5G09690 | 50.160 | 313 | 121 | 2 | 17 | 298 | 12 | 320 | 6.35e-92 | 276 |
| MS.gene40181.t1 | AT5G09690 | 50.159 | 315 | 118 | 3 | 17 | 298 | 23 | 331 | 6.49e-92 | 277 |
| MS.gene40181.t1 | AT5G09690 | 50.159 | 315 | 118 | 3 | 17 | 298 | 23 | 331 | 6.49e-92 | 277 |
| MS.gene40181.t1 | AT5G09690 | 50.482 | 311 | 119 | 2 | 17 | 296 | 12 | 318 | 1.02e-91 | 276 |
| MS.gene40181.t1 | AT5G09690 | 50.482 | 311 | 119 | 2 | 17 | 296 | 23 | 329 | 1.29e-91 | 276 |
| MS.gene40181.t1 | AT5G09690 | 50.479 | 313 | 116 | 3 | 17 | 296 | 12 | 318 | 1.30e-91 | 275 |
| MS.gene40181.t1 | AT3G58970 | 43.713 | 334 | 146 | 4 | 15 | 306 | 46 | 379 | 1.07e-83 | 259 |
| MS.gene40181.t1 | AT5G64560 | 46.177 | 327 | 136 | 4 | 19 | 307 | 13 | 337 | 1.15e-80 | 249 |
| MS.gene40181.t1 | AT5G64560 | 46.177 | 327 | 136 | 4 | 19 | 307 | 13 | 337 | 2.27e-80 | 249 |
| MS.gene40181.t1 | AT2G03620 | 42.773 | 339 | 127 | 5 | 23 | 307 | 40 | 365 | 2.21e-76 | 239 |
| MS.gene40181.t1 | AT2G03620 | 42.773 | 339 | 127 | 5 | 23 | 307 | 40 | 365 | 2.21e-76 | 239 |
| MS.gene40181.t1 | AT5G09690 | 45.312 | 320 | 127 | 4 | 17 | 306 | 12 | 313 | 2.36e-71 | 225 |
| MS.gene40181.t1 | AT5G09690 | 46.931 | 277 | 108 | 3 | 17 | 260 | 12 | 282 | 8.46e-68 | 213 |
| MS.gene40181.t1 | AT5G09690 | 46.931 | 277 | 108 | 3 | 17 | 260 | 23 | 293 | 9.90e-68 | 213 |
| MS.gene40181.t1 | AT5G09690 | 46.931 | 277 | 108 | 3 | 17 | 260 | 23 | 293 | 9.90e-68 | 213 |
| MS.gene40181.t1 | AT5G09690 | 46.931 | 277 | 108 | 3 | 17 | 260 | 23 | 293 | 9.90e-68 | 213 |
| MS.gene40181.t1 | AT5G09720 | 42.545 | 275 | 116 | 4 | 21 | 259 | 8 | 276 | 7.76e-59 | 191 |
| MS.gene40181.t1 | AT5G09720 | 42.545 | 275 | 116 | 4 | 21 | 259 | 8 | 276 | 7.76e-59 | 191 |
| MS.gene40181.t1 | AT4G28580 | 36.306 | 314 | 151 | 7 | 25 | 301 | 46 | 347 | 2.12e-54 | 182 |
| MS.gene40181.t1 | AT5G22830 | 29.016 | 193 | 118 | 4 | 37 | 225 | 135 | 312 | 2.65e-11 | 64.3 |
| MS.gene40181.t1 | AT5G22830 | 29.016 | 193 | 118 | 4 | 37 | 225 | 135 | 312 | 2.65e-11 | 64.3 |
Find 87 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCATGATGGCGTGCTTTC+CGG | 0.208340 | 5.4:+585933 | None:intergenic |
| AGCCGTTTGGTTGCGATTAC+TGG | 0.222757 | 5.4:-585481 | MS.gene40181:CDS |
| GAAGATTAGTACTCTCAATT+TGG | 0.225739 | 5.4:-585524 | MS.gene40181:CDS |
| CCGGTCATCGTTGGCGTTAC+CGG | 0.262650 | 5.4:+586059 | None:intergenic |
| TGAAGCAGCTTGTAGTGTTT+TGG | 0.284919 | 5.4:-585605 | MS.gene40181:CDS |
| GTACCTTTCTTCCGAATTGC+CGG | 0.346470 | 5.4:+586012 | None:intergenic |
| TCCTACCCTTCCACCGTTCT+CGG | 0.346952 | 5.4:-585862 | MS.gene40181:CDS |
| TGCTCCTCGTCCTGATAATC+AGG | 0.376856 | 5.4:-585689 | MS.gene40181:CDS |
| TGAGAATCTTCCTGATTATC+AGG | 0.379240 | 5.4:+585679 | None:intergenic |
| TGCTCTTTCTCTTCCGAGAA+CGG | 0.416716 | 5.4:+585849 | None:intergenic |
| TGCACGTGACCTTCGAATCC+TGG | 0.419970 | 5.4:-585896 | MS.gene40181:CDS |
| ACAGAACCATCTTCTCCAAA+TGG | 0.439397 | 5.4:-583980 | MS.gene40181:CDS |
| CCGCCGCCGTACCGGCAATT+CGG | 0.439847 | 5.4:-586023 | MS.gene40181:CDS |
| CTCGATTACCTGTGCTTCGC+CGG | 0.441216 | 5.4:+585957 | None:intergenic |
| CTCCTCAACATCAAGCTTAG+TGG | 0.445396 | 5.4:+585117 | None:intergenic |
| AACAGCCGCCGCCGCCGTAC+CGG | 0.447305 | 5.4:-586031 | MS.gene40181:CDS |
| TGACTCCCATTTGGAGAAGA+TGG | 0.450914 | 5.4:+583974 | None:intergenic |
| GCTTGATGATGATGAAGATA+TGG | 0.464583 | 5.4:-585422 | MS.gene40181:CDS |
| AATTGCCGGTACGGCGGCGG+CGG | 0.465378 | 5.4:+586026 | None:intergenic |
| TGAGGAGCTTGAGATGCTCT+TGG | 0.467583 | 5.4:-585101 | MS.gene40181:CDS |
| TCCGTTTGAATTCGTTGCGC+TGG | 0.471296 | 5.4:-585638 | MS.gene40181:CDS |
| CCGAATTGCCGGTACGGCGG+CGG | 0.474107 | 5.4:+586023 | None:intergenic |
| CATGTTGACCACGGCAACTC+TGG | 0.474836 | 5.4:-583953 | MS.gene40181:CDS |
| GAGAAGAAGAACTTCGTTTG+CGG | 0.477402 | 5.4:+585789 | None:intergenic |
| GCCGTTTGGTTGCGATTACT+GGG | 0.478784 | 5.4:-585480 | MS.gene40181:CDS |
| TTCGTGATGACGAAGAATCC+TGG | 0.480391 | 5.4:+585720 | None:intergenic |
| GGTAGGAGAGGAGAGGGTCC+AGG | 0.480489 | 5.4:+585878 | None:intergenic |
| CGTCAATGGCTGGTTGTTGA+CGG | 0.484415 | 5.4:-585982 | MS.gene40181:CDS |
| CACGCCATCATGCGTCGTAC+CGG | 0.485557 | 5.4:-585925 | MS.gene40181:CDS |
| CCGGTAACGCCAACGATGAC+CGG | 0.485628 | 5.4:-586059 | MS.gene40181:CDS |
| TGGTCAACATGACTCCCATT+TGG | 0.493890 | 5.4:+583965 | None:intergenic |
| AAGGTACAAGCGTTCGTCAA+TGG | 0.506236 | 5.4:-585996 | MS.gene40181:CDS |
| AGGATTCGAAGGTCACGTGC+AGG | 0.509325 | 5.4:+585898 | None:intergenic |
| CAGAACCATCTTCTCCAAAT+GGG | 0.517721 | 5.4:-583979 | MS.gene40181:CDS |
| TTTGGTTGCGATTACTGGGA+GGG | 0.518348 | 5.4:-585476 | MS.gene40181:CDS |
| AAGGTCACGTGCAGGGAGGC+CGG | 0.519707 | 5.4:+585906 | None:intergenic |
| TCGTCAGATTAAGAGCCGTT+TGG | 0.523284 | 5.4:-585494 | MS.gene40181:CDS |
| TCGTTCAAGAGCTTCAAGCC+AGG | 0.526920 | 5.4:-585738 | MS.gene40181:CDS |
| TACAAGCGTTCGTCAATGGC+TGG | 0.527925 | 5.4:-585992 | MS.gene40181:CDS |
| TGTTCCCCACCGGTCATCGT+TGG | 0.533388 | 5.4:+586050 | None:intergenic |
| TGGCTGGTTGTTGACGGCAC+CGG | 0.538585 | 5.4:-585976 | MS.gene40181:CDS |
| CGGCGGCGGCTGTTCCCCAC+CGG | 0.539900 | 5.4:+586040 | None:intergenic |
| TGACGGCACCGGCGAAGCAC+AGG | 0.542644 | 5.4:-585965 | MS.gene40181:CDS |
| TCCCAGTAATCGCAACCAAA+CGG | 0.543100 | 5.4:+585479 | None:intergenic |
| TCTCTTCCGAGAACGGTGGA+AGG | 0.543564 | 5.4:+585856 | None:intergenic |
| GAAGTCAATTTATCAAGCGC+AGG | 0.545824 | 5.4:+585547 | None:intergenic |
| CACCACTAAGCTTGATGTTG+AGG | 0.552846 | 5.4:-585119 | MS.gene40181:CDS |
| TCCAGCGCAACGAATTCAAA+CGG | 0.553760 | 5.4:+585637 | None:intergenic |
| GGAGAGGGTCCAGGATTCGA+AGG | 0.557929 | 5.4:+585887 | None:intergenic |
| TTTCTTCCGAATTGCCGGTA+CGG | 0.558235 | 5.4:+586017 | None:intergenic |
| AAGATGCGAGGAAACGTCAC+CGG | 0.560599 | 5.4:-586078 | MS.gene40181:CDS |
| CTCTTGAACGAAAGGAGTAA+CGG | 0.563746 | 5.4:+585750 | None:intergenic |
| GAAGCACAGGTAATCGAGGC+CGG | 0.564508 | 5.4:-585952 | MS.gene40181:CDS |
| GCTTACTTTGTTCAGATCGA+CGG | 0.566014 | 5.4:-585076 | MS.gene40181:CDS |
| GCTTGAAGCTCTTGAACGAA+AGG | 0.572210 | 5.4:+585742 | None:intergenic |
| CTCTTCCGAGAACGGTGGAA+GGG | 0.575974 | 5.4:+585857 | None:intergenic |
| GTACCGGCAATTCGGAAGAA+AGG | 0.580132 | 5.4:-586015 | MS.gene40181:CDS |
| TGGAAGGGTAGGAGAGGAGA+GGG | 0.581421 | 5.4:+585872 | None:intergenic |
| GAGGCCGGTACGACGCATGA+TGG | 0.587077 | 5.4:+585921 | None:intergenic |
| GGAGAGTGAAGCAAAGACGC+TGG | 0.597867 | 5.4:-585584 | MS.gene40181:CDS |
| TAACGCCAACGATGACCGGT+GGG | 0.598695 | 5.4:-586055 | MS.gene40181:CDS |
| AGCAAAGACGCTGGAACAAG+AGG | 0.602892 | 5.4:-585575 | MS.gene40181:CDS |
| CTTCCGAATTGCCGGTACGG+CGG | 0.605828 | 5.4:+586020 | None:intergenic |
| CACTCTCAATAAGCTCTCAA+CGG | 0.611809 | 5.4:-585053 | MS.gene40181:intron |
| GGATTCGAAGGTCACGTGCA+GGG | 0.614484 | 5.4:+585899 | None:intergenic |
| TCCGAGAACGGTGGAAGGGT+AGG | 0.621308 | 5.4:+585861 | None:intergenic |
| GAACGGTGGAAGGGTAGGAG+AGG | 0.622247 | 5.4:+585866 | None:intergenic |
| GTTGACCACGGCAACTCTGG+TGG | 0.627812 | 5.4:-583950 | None:intergenic |
| CTCAACATCAAGCTTAGTGG+TGG | 0.628847 | 5.4:+585120 | None:intergenic |
| TAGTGCTTGCACGTGTTCCG+CGG | 0.631370 | 5.4:+585155 | None:intergenic |
| GTTTGGTTGCGATTACTGGG+AGG | 0.636774 | 5.4:-585477 | MS.gene40181:CDS |
| GTAACGCCAACGATGACCGG+TGG | 0.639069 | 5.4:-586056 | MS.gene40181:CDS |
| ATTATCAGGACGAGGAGCAG+TGG | 0.639109 | 5.4:+585693 | None:intergenic |
| TCTTCCTGATTATCAGGACG+AGG | 0.641967 | 5.4:+585685 | None:intergenic |
| CGGCGAAGCACAGGTAATCG+AGG | 0.643846 | 5.4:-585956 | MS.gene40181:CDS |
| GTGGAAGGGTAGGAGAGGAG+AGG | 0.646101 | 5.4:+585871 | None:intergenic |
| TGAACGAAAGGAGTAACGGA+AGG | 0.650529 | 5.4:+585754 | None:intergenic |
| ACTTACCACCAGAGTTGCCG+TGG | 0.664332 | 5.4:+583945 | None:intergenic |
| AACGCCAACGATGACCGGTG+GGG | 0.664464 | 5.4:-586054 | MS.gene40181:CDS |
| GATAATCAGGAAGATTCTCA+CGG | 0.676638 | 5.4:-585676 | MS.gene40181:CDS |
| TCTTTCTCTTCCGAGAACGG+TGG | 0.682175 | 5.4:+585852 | None:intergenic |
| AATGGGAGTCATGTTGACCA+CGG | 0.693986 | 5.4:-583962 | MS.gene40181:CDS |
| TTCGAAGGTCACGTGCAGGG+AGG | 0.702733 | 5.4:+585902 | None:intergenic |
| TCGAATTTAAGGGATAGCCG+CGG | 0.713074 | 5.4:-585172 | MS.gene40181:intron |
| TGATGATGATGAAGATATGG+CGG | 0.716447 | 5.4:-585419 | MS.gene40181:CDS |
| GGAGTATGTTGATGACACAG+AGG | 0.741575 | 5.4:-584031 | MS.gene40181:CDS |
| AATCAGGAAGATTCTCACGG+CGG | 0.760544 | 5.4:-585673 | MS.gene40181:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATGAGTATATATTA+TGG | - | chr5.4:585815-585834 | MS.gene40181:CDS | 10.0% |
| !! | AAATCAAGGAAATGTTAAAT+AGG | + | chr5.4:585006-585025 | None:intergenic | 20.0% |
| !! | AGATAATTATAATCAATCCA+AGG | + | chr5.4:585512-585531 | None:intergenic | 20.0% |
| !! | GATAAATTATAATCAATCCA+AGG | + | chr5.4:585783-585802 | None:intergenic | 20.0% |
| !! | TAATAGCAATTATATAAACC+AGG | + | chr5.4:585848-585867 | None:intergenic | 20.0% |
| !! | TATGAAAATTGTATCTTCAT+AGG | + | chr5.4:585541-585560 | None:intergenic | 20.0% |
| !!! | TGATTTTTCATAAACTAACT+TGG | - | chr5.4:585598-585617 | MS.gene40181:CDS | 20.0% |
| !!! | TTTAACATTTCCTTGATTTT+AGG | - | chr5.4:585007-585026 | MS.gene40181:intron | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+AGG | + | chr5.4:585341-585360 | None:intergenic | 25.0% |
| ! | AAAAATAAGCCAATCCAAAA+GGG | + | chr5.4:585340-585359 | None:intergenic | 25.0% |
| ! | ATATATTATGGTACAATACC+TGG | - | chr5.4:585827-585846 | MS.gene40181:CDS | 25.0% |
| ! | GTTATAGAAACCTAAAATCA+AGG | + | chr5.4:585020-585039 | None:intergenic | 25.0% |
| ! | TATGTGATATGATGTTACTA+TGG | - | chr5.4:585874-585893 | MS.gene40181:CDS | 25.0% |
| !!! | CATTAGTGTTTTTAACTTGT+TGG | + | chr5.4:585066-585085 | None:intergenic | 25.0% |
| AAATCAGCTTATGAAGTAGT+AGG | - | chr5.4:585437-585456 | MS.gene40181:CDS | 30.0% | |
| ATGTCACTAGATAAGTTCAA+GGG | - | chr5.4:585314-585333 | MS.gene40181:intron | 30.0% | |
| CAAGGAAATGTTAAATAGGA+AGG | + | chr5.4:585002-585021 | None:intergenic | 30.0% | |
| GAAGATTAGTACTCTCAATT+TGG | - | chr5.4:584502-584521 | MS.gene40181:intron | 30.0% | |
| GATCATGATGTTCATGATAA+TGG | - | chr5.4:584704-584723 | MS.gene40181:intron | 30.0% | |
| TATGTCACTAGATAAGTTCA+AGG | - | chr5.4:585313-585332 | MS.gene40181:intron | 30.0% | |
| TCAAAAAGTGAGAGATGAAT+TGG | - | chr5.4:584574-584593 | MS.gene40181:intron | 30.0% | |
| TTATCATGAACATCATGATC+AGG | + | chr5.4:584704-584723 | None:intergenic | 30.0% | |
| ! | AATTCTAGAGAGCAAATGTT+TGG | - | chr5.4:584827-584846 | MS.gene40181:intron | 30.0% |
| ! | CTCTTTGGATTGACTTATTT+GGG | + | chr5.4:585708-585727 | None:intergenic | 30.0% |
| ! | TCTCTTTGGATTGACTTATT+TGG | + | chr5.4:585709-585728 | None:intergenic | 30.0% |
| ! | TCTTTGGATTGACTTATTTG+GGG | + | chr5.4:585707-585726 | None:intergenic | 30.0% |
| ! | TTTTTGCTTTCTGATCTAGT+TGG | - | chr5.4:585105-585124 | MS.gene40181:CDS | 30.0% |
| !! | GCTGATACTTTGTTATTTGT+TGG | - | chr5.4:585953-585972 | MS.gene40181:CDS | 30.0% |
| AAAAATAAGCCGATCCAAAC+GGG | - | chr5.4:585680-585699 | MS.gene40181:CDS | 35.0% | |
| CAAAAATAAGCCGATCCAAA+CGG | - | chr5.4:585679-585698 | MS.gene40181:CDS | 35.0% | |
| CTTATTTCCACAAACTCACT+AGG | + | chr5.4:585225-585244 | None:intergenic | 35.0% | |
| GATAATCAGGAAGATTCTCA+CGG | - | chr5.4:584350-584369 | MS.gene40181:intron | 35.0% | |
| TGAGAATCTTCCTGATTATC+AGG | + | chr5.4:584350-584369 | None:intergenic | 35.0% | |
| ! | CAAAGTATCAGCAACAAAGA+AGG | + | chr5.4:585945-585964 | None:intergenic | 35.0% |
| ! | CACTTTATGGTTTGTACTTG+AGG | - | chr5.4:585486-585505 | MS.gene40181:CDS | 35.0% |
| ! | TGATGATGATGAAGATATGG+CGG | - | chr5.4:584607-584626 | MS.gene40181:intron | 35.0% |
| !! | GCTTGATGATGATGAAGATA+TGG | - | chr5.4:584604-584623 | MS.gene40181:intron | 35.0% |
| !! | GGTGTTGATGTTAATCAAAC+TGG | - | chr5.4:584725-584744 | MS.gene40181:intron | 35.0% |
| !! | GTTTGGTGCTTCGAATTTAA+GGG | - | chr5.4:584844-584863 | MS.gene40181:intron | 35.0% |
| !! | TGTTTGGTGCTTCGAATTTA+AGG | - | chr5.4:584843-584862 | MS.gene40181:intron | 35.0% |
| !!! | GTGTTTTTAACTTGTTGGAC+TGG | + | chr5.4:585061-585080 | None:intergenic | 35.0% |
| ACAGAACCATCTTCTCCAAA+TGG | - | chr5.4:586046-586065 | MS.gene40181:CDS | 40.0% | |
| ATCGGTACTAAGAGTCTCTT+TGG | + | chr5.4:585723-585742 | None:intergenic | 40.0% | |
| ATGCTATCCTAGTGAGTTTG+TGG | - | chr5.4:585215-585234 | MS.gene40181:intron | 40.0% | |
| CACTCTCAATAAGCTCTCAA+CGG | - | chr5.4:584973-584992 | MS.gene40181:intron | 40.0% | |
| CAGAACCATCTTCTCCAAAT+GGG | - | chr5.4:586047-586066 | MS.gene40181:CDS | 40.0% | |
| CTCTTGAACGAAAGGAGTAA+CGG | + | chr5.4:584279-584298 | None:intergenic | 40.0% | |
| GAAGTCAATTTATCAAGCGC+AGG | + | chr5.4:584482-584501 | None:intergenic | 40.0% | |
| GAAGTCACTTCAACAGCAAT+TGG | - | chr5.4:584646-584665 | MS.gene40181:intron | 40.0% | |
| GAGAAGAAGAACTTCGTTTG+CGG | + | chr5.4:584240-584259 | None:intergenic | 40.0% | |
| GATGTTAATCAAACTGGACC+AGG | - | chr5.4:584731-584750 | MS.gene40181:intron | 40.0% | |
| GCTTACTTTGTTCAGATCGA+CGG | - | chr5.4:584950-584969 | MS.gene40181:intron | 40.0% | |
| TTCAACAGTGTCTTCATCAG+AGG | + | chr5.4:584678-584697 | None:intergenic | 40.0% | |
| ! | GACTTGATGATCTGTACTTG+AGG | - | chr5.4:585757-585776 | MS.gene40181:CDS | 40.0% |
| ! | TGAAGCAGCTTGTAGTGTTT+TGG | - | chr5.4:584421-584440 | MS.gene40181:intron | 40.0% |
| AAGGTACAAGCGTTCGTCAA+TGG | - | chr5.4:584030-584049 | MS.gene40181:CDS | 45.0% | |
| AATCAGGAAGATTCTCACGG+CGG | - | chr5.4:584353-584372 | MS.gene40181:intron | 45.0% | |
| AATGGGAGTCATGTTGACCA+CGG | - | chr5.4:586064-586083 | MS.gene40181:CDS | 45.0% | |
| AGGAGAGGTGAATTATGAGG+AGG | - | chr5.4:584790-584809 | MS.gene40181:intron | 45.0% | |
| AGGAGGAGAGGTGAATTATG+AGG | - | chr5.4:584787-584806 | MS.gene40181:intron | 45.0% | |
| AGTCTTCTCCTCGTGGTAAT+CGG | + | chr5.4:585741-585760 | None:intergenic | 45.0% | |
| ATCATCAAGTCTTCTCCTCG+TGG | + | chr5.4:585748-585767 | None:intergenic | 45.0% | |
| ATGATCTGTACTTGAGGCCT+TGG | - | chr5.4:585763-585782 | MS.gene40181:CDS | 45.0% | |
| CACCACTAAGCTTGATGTTG+AGG | - | chr5.4:584907-584926 | MS.gene40181:intron | 45.0% | |
| CTCAACATCAAGCTTAGTGG+TGG | + | chr5.4:584909-584928 | None:intergenic | 45.0% | |
| CTCCTCAACATCAAGCTTAG+TGG | + | chr5.4:584912-584931 | None:intergenic | 45.0% | |
| GCTTGAAGCTCTTGAACGAA+AGG | + | chr5.4:584287-584306 | None:intergenic | 45.0% | |
| GGTGAATTATGAGGAGGATG+AGG | - | chr5.4:584796-584815 | MS.gene40181:intron | 45.0% | |
| GTACCTTTCTTCCGAATTGC+CGG | + | chr5.4:584017-584036 | None:intergenic | 45.0% | |
| TCCAGCGCAACGAATTCAAA+CGG | + | chr5.4:584392-584411 | None:intergenic | 45.0% | |
| TCCCAGTAATCGCAACCAAA+CGG | + | chr5.4:584550-584569 | None:intergenic | 45.0% | |
| TCGAATTTAAGGGATAGCCG+CGG | - | chr5.4:584854-584873 | MS.gene40181:intron | 45.0% | |
| TCGTCAGATTAAGAGCCGTT+TGG | - | chr5.4:584532-584551 | MS.gene40181:intron | 45.0% | |
| TCTTCCTGATTATCAGGACG+AGG | + | chr5.4:584344-584363 | None:intergenic | 45.0% | |
| TGACTCCCATTTGGAGAAGA+TGG | + | chr5.4:586055-586074 | None:intergenic | 45.0% | |
| TGCTCTTTCTCTTCCGAGAA+CGG | + | chr5.4:584180-584199 | None:intergenic | 45.0% | |
| TGCTGAGATATCGTTGGAAG+CGG | - | chr5.4:584754-584773 | MS.gene40181:intron | 45.0% | |
| TGGTCAACATGACTCCCATT+TGG | + | chr5.4:586064-586083 | None:intergenic | 45.0% | |
| TTTCTTCCGAATTGCCGGTA+CGG | + | chr5.4:584012-584031 | None:intergenic | 45.0% | |
| TTTGGTTGCGATTACTGGGA+GGG | - | chr5.4:584550-584569 | MS.gene40181:intron | 45.0% | |
| ! | ATATCGTTGGAAGCGGGTTT+AGG | - | chr5.4:584761-584780 | MS.gene40181:intron | 45.0% |
| ! | ATGGTTTGTACTTGAGGCCT+TGG | - | chr5.4:585492-585511 | MS.gene40181:CDS | 45.0% |
| ! | GATAAGTTCAAGGGCCCTTT+TGG | - | chr5.4:585323-585342 | MS.gene40181:intron | 45.0% |
| ! | GGTTGTCTTGTTGAAGCTGA+GGG | - | chr5.4:585974-585993 | MS.gene40181:CDS | 45.0% |
| ! | TGAACGAAAGGAGTAACGGA+AGG | + | chr5.4:584275-584294 | None:intergenic | 45.0% |
| ! | TGGTTGTCTTGTTGAAGCTG+AGG | - | chr5.4:585973-585992 | MS.gene40181:CDS | 45.0% |
| ! | TTCGTGATGACGAAGAATCC+TGG | + | chr5.4:584309-584328 | None:intergenic | 45.0% |
| !! | GGAGTATGTTGATGACACAG+AGG | - | chr5.4:585995-586014 | MS.gene40181:CDS | 45.0% |
| !! | TCTTAGTACCGATTACCACG+AGG | - | chr5.4:585730-585749 | MS.gene40181:CDS | 45.0% |
| AGCAAAGACGCTGGAACAAG+AGG | - | chr5.4:584451-584470 | MS.gene40181:intron | 50.0% | |
| AGCCGTTTGGTTGCGATTAC+TGG | - | chr5.4:584545-584564 | MS.gene40181:intron | 50.0% | |
| ATTATCAGGACGAGGAGCAG+TGG | + | chr5.4:584336-584355 | None:intergenic | 50.0% | |
| GCCGTTTGGTTGCGATTACT+GGG | - | chr5.4:584546-584565 | MS.gene40181:intron | 50.0% | |
| GCTGAGATATCGTTGGAAGC+GGG | - | chr5.4:584755-584774 | MS.gene40181:intron | 50.0% | |
| GTTTGGTTGCGATTACTGGG+AGG | - | chr5.4:584549-584568 | MS.gene40181:intron | 50.0% | |
| TACAAGCGTTCGTCAATGGC+TGG | - | chr5.4:584034-584053 | MS.gene40181:CDS | 50.0% | |
| TCCAACGATATCTCAGCACC+TGG | + | chr5.4:584752-584771 | None:intergenic | 50.0% | |
| TCCGTTTGAATTCGTTGCGC+TGG | - | chr5.4:584388-584407 | MS.gene40181:intron | 50.0% | |
| TCGTTCAAGAGCTTCAAGCC+AGG | - | chr5.4:584288-584307 | MS.gene40181:intron | 50.0% | |
| TCTTTCTCTTCCGAGAACGG+TGG | + | chr5.4:584177-584196 | None:intergenic | 50.0% | |
| TGAGGAGCTTGAGATGCTCT+TGG | - | chr5.4:584925-584944 | MS.gene40181:intron | 50.0% | |
| TGCTCCTCGTCCTGATAATC+AGG | - | chr5.4:584337-584356 | MS.gene40181:intron | 50.0% | |
| ! | ATTTGGGGTCCCGTTTGGAT+CGG | + | chr5.4:585692-585711 | None:intergenic | 50.0% |
| ! | CGTCAATGGCTGGTTGTTGA+CGG | - | chr5.4:584044-584063 | MS.gene40181:intron | 50.0% |
| ! | GACTTATTTGGGGTCCCGTT+TGG | + | chr5.4:585697-585716 | None:intergenic | 50.0% |
| ! | GTACCGGCAATTCGGAAGAA+AGG | - | chr5.4:584011-584030 | MS.gene40181:CDS | 50.0% |
| ! | GTTCAAGGGCCCTTTTGGAT+TGG | - | chr5.4:585328-585347 | MS.gene40181:intron | 50.0% |
| !! | ACCAGGTGCTGAGATATCGT+TGG | - | chr5.4:584748-584767 | MS.gene40181:intron | 50.0% |
| !! | ACCATAAAGTGCTGTCCGCT+CGG | + | chr5.4:585477-585496 | None:intergenic | 50.0% |
| ACCGAGCGGACAGCACTTTA+TGG | - | chr5.4:585473-585492 | MS.gene40181:CDS | 55.0% | |
| AGGATTCGAAGGTCACGTGC+AGG | + | chr5.4:584131-584150 | None:intergenic | 55.0% | |
| CATGTTGACCACGGCAACTC+TGG | - | chr5.4:586073-586092 | MS.gene40181:CDS | 55.0% | |
| CTCGATTACCTGTGCTTCGC+CGG | + | chr5.4:584072-584091 | None:intergenic | 55.0% | |
| CTCTTCCGAGAACGGTGGAA+GGG | + | chr5.4:584172-584191 | None:intergenic | 55.0% | |
| GAAGCACAGGTAATCGAGGC+CGG | - | chr5.4:584074-584093 | MS.gene40181:intron | 55.0% | |
| GGAGAGTGAAGCAAAGACGC+TGG | - | chr5.4:584442-584461 | MS.gene40181:intron | 55.0% | |
| GGATTCGAAGGTCACGTGCA+GGG | + | chr5.4:584130-584149 | None:intergenic | 55.0% | |
| TAACGCCAACGATGACCGGT+GGG | - | chr5.4:583971-583990 | MS.gene40181:CDS | 55.0% | |
| TAGTGCTTGCACGTGTTCCG+CGG | + | chr5.4:584874-584893 | None:intergenic | 55.0% | |
| TCCTACCCTTCCACCGTTCT+CGG | - | chr5.4:584164-584183 | MS.gene40181:intron | 55.0% | |
| TCTCTTCCGAGAACGGTGGA+AGG | + | chr5.4:584173-584192 | None:intergenic | 55.0% | |
| TGCACGTGACCTTCGAATCC+TGG | - | chr5.4:584130-584149 | MS.gene40181:intron | 55.0% | |
| TGGAAGGGTAGGAGAGGAGA+GGG | + | chr5.4:584157-584176 | None:intergenic | 55.0% | |
| ! | ACGCATGATGGCGTGCTTTC+CGG | + | chr5.4:584096-584115 | None:intergenic | 55.0% |
| ! | TCGTTGGAAGCGGGTTTAGG+AGG | - | chr5.4:584764-584783 | MS.gene40181:intron | 55.0% |
| ! | TTGGAAGCGGGTTTAGGAGG+AGG | - | chr5.4:584767-584786 | MS.gene40181:intron | 55.0% |
| AACGCCAACGATGACCGGTG+GGG | - | chr5.4:583972-583991 | MS.gene40181:CDS | 60.0% | |
| AGTGCTGTCCGCTCGGTAGT+CGG | + | chr5.4:585470-585489 | None:intergenic | 60.0% | |
| CACGCCATCATGCGTCGTAC+CGG | - | chr5.4:584101-584120 | MS.gene40181:intron | 60.0% | |
| CCGGTAACGCCAACGATGAC+CGG | - | chr5.4:583967-583986 | MS.gene40181:CDS | 60.0% | |
| CCGGTCATCGTTGGCGTTAC+CGG | + | chr5.4:583970-583989 | None:intergenic | 60.0% | |
| CGGCGAAGCACAGGTAATCG+AGG | - | chr5.4:584070-584089 | MS.gene40181:intron | 60.0% | |
| CTTCCGAATTGCCGGTACGG+CGG | + | chr5.4:584009-584028 | None:intergenic | 60.0% | |
| GAACGGTGGAAGGGTAGGAG+AGG | + | chr5.4:584163-584182 | None:intergenic | 60.0% | |
| GGAGAGGGTCCAGGATTCGA+AGG | + | chr5.4:584142-584161 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGAGGAGGAG+AGG | - | chr5.4:584775-584794 | MS.gene40181:intron | 60.0% | |
| GTAACGCCAACGATGACCGG+TGG | - | chr5.4:583970-583989 | MS.gene40181:CDS | 60.0% | |
| GTGGAAGGGTAGGAGAGGAG+AGG | + | chr5.4:584158-584177 | None:intergenic | 60.0% | |
| TCCGAGAACGGTGGAAGGGT+AGG | + | chr5.4:584168-584187 | None:intergenic | 60.0% | |
| TGTTCCCCACCGGTCATCGT+TGG | + | chr5.4:583979-583998 | None:intergenic | 60.0% | |
| TTCGAAGGTCACGTGCAGGG+AGG | + | chr5.4:584127-584146 | None:intergenic | 60.0% | |
| ! | GAAGCGGGTTTAGGAGGAGG+AGG | - | chr5.4:584770-584789 | MS.gene40181:intron | 60.0% |
| ! | TGGCTGGTTGTTGACGGCAC+CGG | - | chr5.4:584050-584069 | MS.gene40181:intron | 60.0% |
| !! | GACGAGTACCGACTACCGAG+CGG | - | chr5.4:585459-585478 | MS.gene40181:CDS | 60.0% |
| AAGGTCACGTGCAGGGAGGC+CGG | + | chr5.4:584123-584142 | None:intergenic | 65.0% | |
| GAGGCCGGTACGACGCATGA+TGG | + | chr5.4:584108-584127 | None:intergenic | 65.0% | |
| GGTAGGAGAGGAGAGGGTCC+AGG | + | chr5.4:584151-584170 | None:intergenic | 65.0% | |
| AATTGCCGGTACGGCGGCGG+CGG | + | chr5.4:584003-584022 | None:intergenic | 70.0% | |
| CCGAATTGCCGGTACGGCGG+CGG | + | chr5.4:584006-584025 | None:intergenic | 70.0% | |
| ! | CCGCCGCCGTACCGGCAATT+CGG | - | chr5.4:584003-584022 | MS.gene40181:CDS | 70.0% |
| !! | TGACGGCACCGGCGAAGCAC+AGG | - | chr5.4:584061-584080 | MS.gene40181:intron | 70.0% |
| AACAGCCGCCGCCGCCGTAC+CGG | - | chr5.4:583995-584014 | MS.gene40181:CDS | 75.0% | |
| ! | CGGCGGCGGCTGTTCCCCAC+CGG | + | chr5.4:583989-584008 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 583951 | 586097 | 583951 | ID=MS.gene40181 |
| chr5.4 | mRNA | 583951 | 586097 | 583951 | ID=MS.gene40181.t1;Parent=MS.gene40181 |
| chr5.4 | exon | 585415 | 586097 | 585415 | ID=MS.gene40181.t1.exon1;Parent=MS.gene40181.t1 |
| chr5.4 | CDS | 585415 | 586097 | 585415 | ID=cds.MS.gene40181.t1;Parent=MS.gene40181.t1 |
| chr5.4 | exon | 585054 | 585183 | 585054 | ID=MS.gene40181.t1.exon2;Parent=MS.gene40181.t1 |
| chr5.4 | CDS | 585054 | 585183 | 585054 | ID=cds.MS.gene40181.t1;Parent=MS.gene40181.t1 |
| chr5.4 | exon | 583951 | 584058 | 583951 | ID=MS.gene40181.t1.exon3;Parent=MS.gene40181.t1 |
| chr5.4 | CDS | 583951 | 584058 | 583951 | ID=cds.MS.gene40181.t1;Parent=MS.gene40181.t1 |
| Gene Sequence |
| Protein sequence |
