Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046935.t1 | XP_003610633.1 | 96.6 | 446 | 12 | 2 | 1 | 445 | 1 | 444 | 1.60E-232 | 815.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046935.t1 | Q9LJN2 | 64.7 | 450 | 113 | 7 | 33 | 445 | 44 | 484 | 4.9e-137 | 489.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046935.t1 | G7K0Y3 | 96.6 | 446 | 12 | 2 | 1 | 445 | 1 | 444 | 1.2e-232 | 815.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40853 | MS.gene046935 | PPI |
| MS.gene067486 | MS.gene046935 | PPI |
| MS.gene054723 | MS.gene046935 | PPI |
| MS.gene063969 | MS.gene046935 | PPI |
| MS.gene83528 | MS.gene046935 | PPI |
| MS.gene046935 | MS.gene071246 | PPI |
| MS.gene90371 | MS.gene046935 | PPI |
| MS.gene98061 | MS.gene046935 | PPI |
| MS.gene046935 | MS.gene90372 | PPI |
| MS.gene046935 | MS.gene063967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046935.t1 | MTR_5g005240 | 96.637 | 446 | 12 | 2 | 1 | 445 | 1 | 444 | 0.0 | 874 |
| MS.gene046935.t1 | MTR_1g106065 | 55.944 | 429 | 159 | 9 | 26 | 445 | 12 | 419 | 3.66e-149 | 431 |
| MS.gene046935.t1 | MTR_8g094880 | 44.783 | 460 | 169 | 7 | 17 | 443 | 15 | 422 | 7.88e-120 | 356 |
| MS.gene046935.t1 | MTR_8g094905 | 44.783 | 460 | 169 | 7 | 17 | 443 | 15 | 422 | 7.88e-120 | 356 |
| MS.gene046935.t1 | MTR_2g105270 | 45.796 | 452 | 201 | 7 | 8 | 444 | 24 | 446 | 6.55e-116 | 347 |
| MS.gene046935.t1 | MTR_5g045590 | 40.000 | 435 | 207 | 9 | 14 | 444 | 19 | 403 | 3.55e-95 | 292 |
| MS.gene046935.t1 | MTR_1g040495 | 40.758 | 422 | 181 | 8 | 26 | 439 | 5 | 365 | 1.70e-94 | 290 |
| MS.gene046935.t1 | MTR_2g105270 | 48.747 | 359 | 144 | 6 | 23 | 366 | 39 | 372 | 2.00e-94 | 291 |
| MS.gene046935.t1 | MTR_8g088670 | 40.230 | 435 | 187 | 10 | 23 | 444 | 46 | 420 | 3.83e-94 | 290 |
| MS.gene046935.t1 | MTR_2g105270 | 45.961 | 359 | 154 | 6 | 8 | 351 | 24 | 357 | 7.00e-85 | 265 |
| MS.gene046935.t1 | MTR_8g088670 | 38.855 | 332 | 154 | 6 | 23 | 351 | 46 | 331 | 7.73e-64 | 210 |
| MS.gene046935.t1 | MTR_8g088670 | 38.462 | 338 | 141 | 7 | 23 | 348 | 46 | 328 | 8.30e-64 | 209 |
| MS.gene046935.t1 | MTR_1g040475 | 44.737 | 190 | 98 | 3 | 36 | 223 | 20 | 204 | 1.67e-42 | 150 |
| MS.gene046935.t1 | MTR_2g100150 | 56.522 | 161 | 35 | 7 | 34 | 190 | 15 | 144 | 8.44e-40 | 140 |
| MS.gene046935.t1 | MTR_1g076210 | 48.980 | 147 | 68 | 3 | 301 | 444 | 246 | 388 | 1.94e-34 | 132 |
| MS.gene046935.t1 | MTR_1g093280 | 48.980 | 147 | 68 | 3 | 301 | 444 | 246 | 388 | 1.94e-34 | 132 |
| MS.gene046935.t1 | MTR_7g096170 | 48.175 | 137 | 61 | 3 | 302 | 436 | 155 | 283 | 2.13e-31 | 122 |
| MS.gene046935.t1 | MTR_7g096170 | 48.175 | 137 | 61 | 3 | 302 | 436 | 252 | 380 | 1.41e-30 | 122 |
| MS.gene046935.t1 | MTR_1g093370 | 50.420 | 119 | 56 | 1 | 326 | 444 | 51 | 166 | 7.36e-30 | 114 |
| MS.gene046935.t1 | MTR_1g076220 | 50.420 | 119 | 56 | 1 | 326 | 444 | 113 | 228 | 2.18e-29 | 115 |
| MS.gene046935.t1 | MTR_1g076220 | 56.000 | 50 | 22 | 0 | 187 | 236 | 53 | 102 | 2.20e-11 | 63.9 |
| MS.gene046935.t1 | MTR_7g096170 | 57.000 | 100 | 38 | 1 | 302 | 401 | 252 | 346 | 1.72e-28 | 115 |
| MS.gene046935.t1 | MTR_1g055050 | 54.762 | 126 | 38 | 4 | 118 | 243 | 35 | 141 | 1.86e-28 | 113 |
| MS.gene046935.t1 | MTR_2g059110 | 55.000 | 80 | 36 | 0 | 26 | 105 | 8 | 87 | 7.36e-23 | 93.2 |
| MS.gene046935.t1 | MTR_2g059120 | 62.121 | 66 | 25 | 0 | 40 | 105 | 20 | 85 | 4.35e-20 | 85.1 |
| MS.gene046935.t1 | MTR_7g096170 | 65.079 | 63 | 17 | 1 | 302 | 364 | 252 | 309 | 2.32e-16 | 80.1 |
| MS.gene046935.t1 | MTR_1g040455 | 38.298 | 94 | 55 | 1 | 351 | 444 | 7 | 97 | 6.60e-15 | 70.9 |
| MS.gene046935.t1 | MTR_2g084565 | 23.301 | 412 | 219 | 13 | 40 | 444 | 123 | 444 | 4.12e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene046935.t1 | AT3G19640 | 64.000 | 450 | 110 | 7 | 36 | 445 | 47 | 484 | 0.0 | 527 |
| MS.gene046935.t1 | AT1G80900 | 45.077 | 457 | 203 | 8 | 1 | 444 | 19 | 440 | 1.86e-114 | 343 |
| MS.gene046935.t1 | AT1G80900 | 45.077 | 457 | 203 | 8 | 1 | 444 | 19 | 440 | 1.86e-114 | 343 |
| MS.gene046935.t1 | AT1G16010 | 46.591 | 440 | 178 | 10 | 23 | 444 | 40 | 440 | 5.15e-114 | 342 |
| MS.gene046935.t1 | AT1G16010 | 46.591 | 440 | 178 | 10 | 23 | 444 | 40 | 440 | 5.15e-114 | 342 |
| MS.gene046935.t1 | AT1G16010 | 46.591 | 440 | 178 | 10 | 23 | 444 | 40 | 440 | 5.15e-114 | 342 |
| MS.gene046935.t1 | AT5G09690 | 43.721 | 430 | 181 | 6 | 19 | 444 | 12 | 384 | 8.70e-104 | 314 |
| MS.gene046935.t1 | AT5G09690 | 43.721 | 430 | 181 | 6 | 19 | 444 | 23 | 395 | 1.23e-103 | 314 |
| MS.gene046935.t1 | AT5G09690 | 46.253 | 387 | 150 | 5 | 19 | 401 | 23 | 355 | 3.82e-100 | 305 |
| MS.gene046935.t1 | AT3G58970 | 41.055 | 436 | 202 | 7 | 17 | 444 | 46 | 434 | 1.27e-99 | 305 |
| MS.gene046935.t1 | AT2G03620 | 40.952 | 420 | 208 | 8 | 25 | 444 | 40 | 419 | 1.14e-93 | 289 |
| MS.gene046935.t1 | AT2G03620 | 40.952 | 420 | 208 | 8 | 25 | 444 | 40 | 419 | 1.14e-93 | 289 |
| MS.gene046935.t1 | AT5G09690 | 45.355 | 366 | 136 | 5 | 19 | 377 | 12 | 320 | 1.66e-89 | 275 |
| MS.gene046935.t1 | AT5G09690 | 45.961 | 359 | 140 | 4 | 19 | 375 | 12 | 318 | 3.52e-89 | 274 |
| MS.gene046935.t1 | AT5G09690 | 45.961 | 359 | 140 | 4 | 19 | 375 | 12 | 318 | 3.95e-89 | 274 |
| MS.gene046935.t1 | AT5G09690 | 45.152 | 361 | 144 | 4 | 19 | 377 | 23 | 331 | 1.09e-85 | 266 |
| MS.gene046935.t1 | AT5G09690 | 45.152 | 361 | 144 | 4 | 19 | 377 | 23 | 331 | 1.09e-85 | 266 |
| MS.gene046935.t1 | AT5G09690 | 45.378 | 357 | 145 | 3 | 19 | 375 | 23 | 329 | 2.17e-85 | 265 |
| MS.gene046935.t1 | AT5G09690 | 38.785 | 428 | 190 | 8 | 19 | 444 | 12 | 369 | 1.69e-73 | 235 |
| MS.gene046935.t1 | AT4G28580 | 33.487 | 433 | 204 | 11 | 27 | 445 | 46 | 408 | 8.80e-67 | 219 |
| MS.gene046935.t1 | AT5G09690 | 53.881 | 219 | 93 | 2 | 19 | 235 | 23 | 235 | 1.05e-66 | 215 |
| MS.gene046935.t1 | AT5G09690 | 53.881 | 219 | 93 | 2 | 19 | 235 | 23 | 235 | 1.05e-66 | 215 |
| MS.gene046935.t1 | AT5G09690 | 53.881 | 219 | 93 | 2 | 19 | 235 | 23 | 235 | 1.05e-66 | 215 |
| MS.gene046935.t1 | AT5G09690 | 53.917 | 217 | 96 | 1 | 19 | 235 | 12 | 224 | 1.15e-66 | 215 |
| MS.gene046935.t1 | AT5G09720 | 48.837 | 215 | 102 | 2 | 23 | 235 | 8 | 216 | 1.16e-57 | 192 |
| MS.gene046935.t1 | AT5G09720 | 48.837 | 215 | 102 | 2 | 23 | 235 | 8 | 216 | 1.16e-57 | 192 |
| MS.gene046935.t1 | AT5G64560 | 47.794 | 136 | 67 | 2 | 309 | 444 | 261 | 392 | 7.91e-32 | 125 |
| MS.gene046935.t1 | AT5G64560 | 50.806 | 124 | 44 | 3 | 309 | 432 | 261 | 367 | 3.45e-29 | 118 |
| MS.gene046935.t1 | AT5G22830 | 29.016 | 193 | 118 | 4 | 39 | 227 | 135 | 312 | 2.66e-11 | 65.9 |
| MS.gene046935.t1 | AT5G22830 | 29.016 | 193 | 118 | 4 | 39 | 227 | 135 | 312 | 2.66e-11 | 65.9 |
Find 122 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGGTGCTTCGAATTTA+AGG | 0.165870 | 5.4:-689115 | MS.gene046935:CDS |
| ACGCATGATGGCGTGCTTTC+CGG | 0.208340 | 5.4:+689865 | None:intergenic |
| AGCCGTTTGGTTGCGATTAC+TGG | 0.222757 | 5.4:-689413 | MS.gene046935:CDS |
| GAAGATTAGTACTCTCAATT+TGG | 0.225739 | 5.4:-689456 | MS.gene046935:CDS |
| ACTGTTGGCGGCGGCACTGC+TGG | 0.245438 | 5.4:-687764 | MS.gene046935:CDS |
| TGAAGCAGCTTGTAGTGTTT+TGG | 0.284919 | 5.4:-689537 | MS.gene046935:CDS |
| ATCGCTACCGTTGGCGTTAC+CGG | 0.300032 | 5.4:+689997 | None:intergenic |
| ATATCGTTGGAAGCGGGTTT+AGG | 0.335773 | 5.4:-689197 | MS.gene046935:CDS |
| GTGCAAGCACAAACGCTTGC+TGG | 0.343936 | 5.4:-687708 | MS.gene046935:CDS |
| GTACCTTTCTTCCGAATTGC+CGG | 0.346470 | 5.4:+689944 | None:intergenic |
| TCCTACCCTTCCACCGTTCT+CGG | 0.346952 | 5.4:-689794 | MS.gene046935:CDS |
| AGTGCCTTCGTTGTTGTTGC+TGG | 0.353794 | 5.4:-687857 | MS.gene046935:CDS |
| CTGTTGGCGGCGGCACTGCT+GGG | 0.366005 | 5.4:-687763 | MS.gene046935:CDS |
| TGAGAATCTTCCTGATTATC+AGG | 0.379240 | 5.4:+689611 | None:intergenic |
| TACTCCTCGTCCTGATAATC+AGG | 0.381579 | 5.4:-689621 | MS.gene046935:CDS |
| GTTTGGTGCTTCGAATTTAA+GGG | 0.389449 | 5.4:-689114 | MS.gene046935:CDS |
| CTGTTTGATGATAAATTGTA+TGG | 0.401637 | 5.4:-687806 | MS.gene046935:CDS |
| CAAGCGTTTGTGCTTGCACC+AGG | 0.405920 | 5.4:+687712 | None:intergenic |
| TGCTCTTTCTCTTCCGAGAA+CGG | 0.416716 | 5.4:+689781 | None:intergenic |
| TGCACGTGACCTTCGAATCC+TGG | 0.419970 | 5.4:-689828 | MS.gene046935:CDS |
| GATGTTGATGTTAATCAAAC+TGG | 0.433420 | 5.4:-689233 | MS.gene046935:CDS |
| GAAGTCACTTCAACAGCAAT+TGG | 0.436400 | 5.4:-689312 | MS.gene046935:CDS |
| AGCAACCACATACAAGAATA+TGG | 0.438257 | 5.4:+687739 | None:intergenic |
| ACAGAACCATCTTCTCCAAA+TGG | 0.439397 | 5.4:-687912 | MS.gene046935:CDS |
| CCGCCGCCGTACCGGCAATT+CGG | 0.439847 | 5.4:-689955 | MS.gene046935:CDS |
| CTCGATTACCTGTGCTTCGC+CGG | 0.441216 | 5.4:+689889 | None:intergenic |
| CTCCTCAACATCAAGCTTAG+TGG | 0.445396 | 5.4:+689049 | None:intergenic |
| TGTATGTGGTTGCTATTGCC+TGG | 0.445914 | 5.4:-687730 | MS.gene046935:CDS |
| AATTCTAGAGAGCAAATGTT+TGG | 0.448954 | 5.4:-689131 | MS.gene046935:CDS |
| TGACTCCCATTTGGAGAAGA+TGG | 0.450914 | 5.4:+687906 | None:intergenic |
| GCTTGATGATGATGAAGATA+TGG | 0.464583 | 5.4:-689354 | MS.gene046935:CDS |
| AACAGCTGCCGCCGCCGTAC+CGG | 0.467572 | 5.4:-689963 | MS.gene046935:CDS |
| TGAGGAGCTTGAGATGCTCT+TGG | 0.467583 | 5.4:-689033 | MS.gene046935:CDS |
| AGGAGGAGAGGTGAATTATG+AGG | 0.467721 | 5.4:-689171 | MS.gene046935:CDS |
| TCCGTTTGAATTCGTTGCGC+TGG | 0.471296 | 5.4:-689570 | MS.gene046935:CDS |
| CATGTTGACCACGGCAACTC+TGG | 0.474836 | 5.4:-687885 | MS.gene046935:CDS |
| GAGAAGAAGAACTTCGTTTG+CGG | 0.477402 | 5.4:+689721 | None:intergenic |
| GCCGTTTGGTTGCGATTACT+GGG | 0.478784 | 5.4:-689412 | MS.gene046935:CDS |
| GGTGAATTATGAGGAGGATG+AGG | 0.479462 | 5.4:-689162 | MS.gene046935:CDS |
| TTCGTGATGACGAAGAATCC+TGG | 0.480391 | 5.4:+689652 | None:intergenic |
| GGTAGGAGAGGAGAGGGTCC+AGG | 0.480489 | 5.4:+689810 | None:intergenic |
| GAGTTTATGTGGACTGTTGG+CGG | 0.482690 | 5.4:-687776 | MS.gene046935:CDS |
| GAAGCGGGTTTAGGAGGAGG+AGG | 0.484156 | 5.4:-689188 | MS.gene046935:CDS |
| CCGAATTGCCGGTACGGCGG+CGG | 0.484334 | 5.4:+689955 | None:intergenic |
| CGTCAATGGCTGGTTGTTGA+CGG | 0.484415 | 5.4:-689914 | MS.gene046935:CDS |
| CACGCCATCATGCGTCGTAC+CGG | 0.485557 | 5.4:-689857 | MS.gene046935:CDS |
| TTGGAAGCGGGTTTAGGAGG+AGG | 0.490530 | 5.4:-689191 | MS.gene046935:CDS |
| GGGTTTAGGAGGAGGAGGAG+AGG | 0.493637 | 5.4:-689183 | MS.gene046935:CDS |
| TGGTCAACATGACTCCCATT+TGG | 0.493890 | 5.4:+687897 | None:intergenic |
| AAGGTACAAGCGTTCGTCAA+TGG | 0.506236 | 5.4:-689928 | MS.gene046935:CDS |
| TTATCATGAACATCATGATC+AGG | 0.508556 | 5.4:+689257 | None:intergenic |
| AGGATTCGAAGGTCACGTGC+AGG | 0.509325 | 5.4:+689830 | None:intergenic |
| TGGGACCATATTCTTGTATG+TGG | 0.512820 | 5.4:-687744 | MS.gene046935:CDS |
| CAGAACCATCTTCTCCAAAT+GGG | 0.517721 | 5.4:-687911 | MS.gene046935:CDS |
| TTTGGTTGCGATTACTGGGA+GGG | 0.518348 | 5.4:-689408 | MS.gene046935:CDS |
| AAGGTCACGTGCAGGGAGGC+CGG | 0.519707 | 5.4:+689838 | None:intergenic |
| TCGTCAGATTAAGAGCCGTT+TGG | 0.523284 | 5.4:-689426 | MS.gene046935:CDS |
| TCGTTCAAGAGCTTCAAGCC+AGG | 0.526920 | 5.4:-689670 | MS.gene046935:CDS |
| TACAAGCGTTCGTCAATGGC+TGG | 0.527925 | 5.4:-689924 | MS.gene046935:CDS |
| TGCTGAGATATCGTTGGAAG+CGG | 0.529462 | 5.4:-689204 | MS.gene046935:CDS |
| TGGCTGGTTGTTGACGGCAC+CGG | 0.538585 | 5.4:-689908 | MS.gene046935:CDS |
| ACGCCAACGGTAGCGATGAC+CGG | 0.540694 | 5.4:-689991 | MS.gene046935:CDS |
| TGACGGCACCGGCGAAGCAC+AGG | 0.542644 | 5.4:-689897 | MS.gene046935:CDS |
| TCCCAGTAATCGCAACCAAA+CGG | 0.543100 | 5.4:+689411 | None:intergenic |
| TCTCTTCCGAGAACGGTGGA+AGG | 0.543564 | 5.4:+689788 | None:intergenic |
| TTCAACAGTGTCTTCATCAG+AGG | 0.545221 | 5.4:+689283 | None:intergenic |
| GAAGTCAATTTATCAAGCGC+AGG | 0.545824 | 5.4:+689479 | None:intergenic |
| GCTGAGATATCGTTGGAAGC+GGG | 0.545841 | 5.4:-689203 | MS.gene046935:CDS |
| CACCACTAAGCTTGATGTTG+AGG | 0.552846 | 5.4:-689051 | MS.gene046935:CDS |
| TCCAGCGCAACGAATTCAAA+CGG | 0.553760 | 5.4:+689569 | None:intergenic |
| GGAGAGGGTCCAGGATTCGA+AGG | 0.557929 | 5.4:+689819 | None:intergenic |
| TTTCTTCCGAATTGCCGGTA+CGG | 0.558235 | 5.4:+689949 | None:intergenic |
| AAGATGCGAGGAAACGTCAC+CGG | 0.560599 | 5.4:-690016 | MS.gene046935:CDS |
| ATGGGATGAGAGAGTTTATG+TGG | 0.562365 | 5.4:-687787 | MS.gene046935:CDS |
| CCACCGGTCATCGCTACCGT+TGG | 0.563218 | 5.4:+689988 | None:intergenic |
| CTCTTGAACGAAAGGAGTAA+CGG | 0.563746 | 5.4:+689682 | None:intergenic |
| TCGTTGGAAGCGGGTTTAGG+AGG | 0.564325 | 5.4:-689194 | MS.gene046935:CDS |
| GAAGCACAGGTAATCGAGGC+CGG | 0.564508 | 5.4:-689884 | MS.gene046935:CDS |
| GCTTACTTTGTTCAGATCGA+CGG | 0.566014 | 5.4:-689008 | MS.gene046935:CDS |
| GCTTGAAGCTCTTGAACGAA+AGG | 0.572210 | 5.4:+689674 | None:intergenic |
| CTCTTCCGAGAACGGTGGAA+GGG | 0.575974 | 5.4:+689789 | None:intergenic |
| GTACCGGCAATTCGGAAGAA+AGG | 0.580132 | 5.4:-689947 | MS.gene046935:CDS |
| TGGAAGGGTAGGAGAGGAGA+GGG | 0.581421 | 5.4:+689804 | None:intergenic |
| ACCAGGTGCTGAGATATCGT+TGG | 0.584563 | 5.4:-689210 | MS.gene046935:CDS |
| AGGAGAGGTGAATTATGAGG+AGG | 0.586365 | 5.4:-689168 | MS.gene046935:CDS |
| GAGGCCGGTACGACGCATGA+TGG | 0.587077 | 5.4:+689853 | None:intergenic |
| CGGCGGCAGCTGTTCCCCAC+CGG | 0.591719 | 5.4:+689972 | None:intergenic |
| AGAGAGTTTATGTGGACTGT+TGG | 0.592926 | 5.4:-687779 | MS.gene046935:CDS |
| CAACGGTAGCGATGACCGGT+GGG | 0.594792 | 5.4:-689987 | MS.gene046935:CDS |
| GGAGAGTGAAGCAAAGACGC+TGG | 0.597867 | 5.4:-689516 | MS.gene046935:CDS |
| TTTATGTGGACTGTTGGCGG+CGG | 0.601940 | 5.4:-687773 | MS.gene046935:CDS |
| AGCAAAGACGCTGGAACAAG+AGG | 0.602892 | 5.4:-689507 | MS.gene046935:CDS |
| CTTCCGAATTGCCGGTACGG+CGG | 0.605828 | 5.4:+689952 | None:intergenic |
| CACTCTCAATAAGCTCTCAA+CGG | 0.611809 | 5.4:-688985 | MS.gene046935:intron |
| GGATTCGAAGGTCACGTGCA+GGG | 0.614484 | 5.4:+689831 | None:intergenic |
| ATTATCAGGACGAGGAGTAG+TGG | 0.614768 | 5.4:+689625 | None:intergenic |
| TCCAACGATATCTCAGCACC+TGG | 0.620597 | 5.4:+689209 | None:intergenic |
| AACGTCACCGGTAACGCCAA+CGG | 0.620696 | 5.4:-690004 | MS.gene046935:CDS |
| TCCGAGAACGGTGGAAGGGT+AGG | 0.621308 | 5.4:+689793 | None:intergenic |
| TGTTTGATGATAAATTGTAT+GGG | 0.621429 | 5.4:-687805 | MS.gene046935:CDS |
| GAACGGTGGAAGGGTAGGAG+AGG | 0.622247 | 5.4:+689798 | None:intergenic |
| CCAACGGTAGCGATGACCGG+TGG | 0.624688 | 5.4:-689988 | MS.gene046935:CDS |
| GTTGACCACGGCAACTCTGG+TGG | 0.627812 | 5.4:-687882 | MS.gene046935:CDS |
| CTCAACATCAAGCTTAGTGG+TGG | 0.628847 | 5.4:+689052 | None:intergenic |
| TCTTCCTGATTATCAGGACG+AGG | 0.628896 | 5.4:+689617 | None:intergenic |
| TAGTGCTTGCACGTGTTCCG+CGG | 0.631370 | 5.4:+689087 | None:intergenic |
| GTTTGGTTGCGATTACTGGG+AGG | 0.636774 | 5.4:-689409 | MS.gene046935:CDS |
| CGGCGAAGCACAGGTAATCG+AGG | 0.643846 | 5.4:-689888 | MS.gene046935:CDS |
| GTGGAAGGGTAGGAGAGGAG+AGG | 0.646101 | 5.4:+689803 | None:intergenic |
| TGAACGAAAGGAGTAACGGA+AGG | 0.650529 | 5.4:+689686 | None:intergenic |
| ACTTACCACCAGAGTTGCCG+TGG | 0.664332 | 5.4:+687877 | None:intergenic |
| GATGTTAATCAAACTGGACC+AGG | 0.673948 | 5.4:-689227 | MS.gene046935:CDS |
| AATACCAGCAACAACAACGA+AGG | 0.674729 | 5.4:+687853 | None:intergenic |
| AACGGTAGCGATGACCGGTG+GGG | 0.675836 | 5.4:-689986 | MS.gene046935:CDS |
| GATAATCAGGAAGATTCTCA+CGG | 0.676638 | 5.4:-689608 | MS.gene046935:CDS |
| TCTTTCTCTTCCGAGAACGG+TGG | 0.682175 | 5.4:+689784 | None:intergenic |
| AATGGGAGTCATGTTGACCA+CGG | 0.693986 | 5.4:-687894 | MS.gene046935:CDS |
| TTCGAAGGTCACGTGCAGGG+AGG | 0.702733 | 5.4:+689834 | None:intergenic |
| TCGAATTTAAGGGATAGCCG+CGG | 0.713074 | 5.4:-689104 | MS.gene046935:CDS |
| TGATGATGATGAAGATATGG+CGG | 0.716447 | 5.4:-689351 | MS.gene046935:CDS |
| GGAGTATGTTGATGACACAG+AGG | 0.741575 | 5.4:-687963 | MS.gene046935:CDS |
| AATCAGGAAGATTCTCACGG+CGG | 0.760544 | 5.4:-689605 | MS.gene046935:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATGAGTATATATTA+TGG | - | chr5.4:689573-689592 | MS.gene046935:CDS | 10.0% |
| !! | AAATCAAGGAAATGTTAAAT+AGG | + | chr5.4:688764-688783 | None:intergenic | 20.0% |
| !! | AGATAATTATAATCAATCCA+AGG | + | chr5.4:689270-689289 | None:intergenic | 20.0% |
| !! | GATAAATTATAATCAATCCA+AGG | + | chr5.4:689541-689560 | None:intergenic | 20.0% |
| !! | TAATAGCAATTATATAAACC+AGG | + | chr5.4:689606-689625 | None:intergenic | 20.0% |
| !! | TATGAAAATTGTATCTTCAT+AGG | + | chr5.4:689299-689318 | None:intergenic | 20.0% |
| !!! | TGATTTTTCATAAACTAACT+TGG | - | chr5.4:689356-689375 | MS.gene046935:CDS | 20.0% |
| !!! | TGTTTGATGATAAATTGTAT+GGG | - | chr5.4:689911-689930 | MS.gene046935:CDS | 20.0% |
| !!! | TTTAACATTTCCTTGATTTT+AGG | - | chr5.4:688765-688784 | MS.gene046935:intron | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+AGG | + | chr5.4:689099-689118 | None:intergenic | 25.0% |
| ! | AAAAATAAGCCAATCCAAAA+GGG | + | chr5.4:689098-689117 | None:intergenic | 25.0% |
| ! | ATATATTATGGTACAATACC+TGG | - | chr5.4:689585-689604 | MS.gene046935:CDS | 25.0% |
| ! | GTTATAGAAACCTAAAATCA+AGG | + | chr5.4:688778-688797 | None:intergenic | 25.0% |
| ! | TATGTGATATGATGTTACTA+TGG | - | chr5.4:689632-689651 | MS.gene046935:CDS | 25.0% |
| !! | CTGTTTGATGATAAATTGTA+TGG | - | chr5.4:689910-689929 | MS.gene046935:CDS | 25.0% |
| !!! | CATTAGTGTTTTTAACTTGT+TGG | + | chr5.4:688824-688843 | None:intergenic | 25.0% |
| AAATCAGCTTATGAAGTAGT+AGG | - | chr5.4:689195-689214 | MS.gene046935:CDS | 30.0% | |
| ATGTCACTAGATAAGTTCAA+GGG | - | chr5.4:689072-689091 | MS.gene046935:CDS | 30.0% | |
| CAAGGAAATGTTAAATAGGA+AGG | + | chr5.4:688760-688779 | None:intergenic | 30.0% | |
| GAAGATTAGTACTCTCAATT+TGG | - | chr5.4:688260-688279 | MS.gene046935:intron | 30.0% | |
| GATGTTGATGTTAATCAAAC+TGG | - | chr5.4:688483-688502 | MS.gene046935:intron | 30.0% | |
| TATGTCACTAGATAAGTTCA+AGG | - | chr5.4:689071-689090 | MS.gene046935:CDS | 30.0% | |
| TCAAAAAGTGAGAGATGAAT+TGG | - | chr5.4:688332-688351 | MS.gene046935:intron | 30.0% | |
| TTATCATGAACATCATGATC+AGG | + | chr5.4:688462-688481 | None:intergenic | 30.0% | |
| ! | AATTCTAGAGAGCAAATGTT+TGG | - | chr5.4:688585-688604 | MS.gene046935:intron | 30.0% |
| ! | CTCTTTGGATTGACTTATTT+GGG | + | chr5.4:689466-689485 | None:intergenic | 30.0% |
| ! | TCTCTTTGGATTGACTTATT+TGG | + | chr5.4:689467-689486 | None:intergenic | 30.0% |
| ! | TTTTTGCTTTCTGATCTAGT+TGG | - | chr5.4:688863-688882 | MS.gene046935:intron | 30.0% |
| !! | GCTGATACTTTGTTATTTGT+TGG | - | chr5.4:689711-689730 | MS.gene046935:CDS | 30.0% |
| AAAAATAAGCCGATCCAAAC+GGG | - | chr5.4:689438-689457 | MS.gene046935:CDS | 35.0% | |
| AGCAACCACATACAAGAATA+TGG | + | chr5.4:689980-689999 | None:intergenic | 35.0% | |
| CAAAAATAAGCCGATCCAAA+CGG | - | chr5.4:689437-689456 | MS.gene046935:CDS | 35.0% | |
| CTTATTTCCACAAACTCACT+AGG | + | chr5.4:688983-689002 | None:intergenic | 35.0% | |
| GATAATCAGGAAGATTCTCA+CGG | - | chr5.4:688108-688127 | MS.gene046935:intron | 35.0% | |
| TGAGAATCTTCCTGATTATC+AGG | + | chr5.4:688108-688127 | None:intergenic | 35.0% | |
| ! | CAAAGTATCAGCAACAAAGA+AGG | + | chr5.4:689703-689722 | None:intergenic | 35.0% |
| ! | CACTTTATGGTTTGTACTTG+AGG | - | chr5.4:689244-689263 | MS.gene046935:CDS | 35.0% |
| ! | TGATGATGATGAAGATATGG+CGG | - | chr5.4:688365-688384 | MS.gene046935:intron | 35.0% |
| !! | GCTTGATGATGATGAAGATA+TGG | - | chr5.4:688362-688381 | MS.gene046935:intron | 35.0% |
| !! | GTTGTTGTTGCTGGTATTTT+TGG | - | chr5.4:689868-689887 | MS.gene046935:CDS | 35.0% |
| !! | GTTTGGTGCTTCGAATTTAA+GGG | - | chr5.4:688602-688621 | MS.gene046935:intron | 35.0% |
| !! | TGTTTGGTGCTTCGAATTTA+AGG | - | chr5.4:688601-688620 | MS.gene046935:intron | 35.0% |
| !!! | GTGTTTTTAACTTGTTGGAC+TGG | + | chr5.4:688819-688838 | None:intergenic | 35.0% |
| AATACCAGCAACAACAACGA+AGG | + | chr5.4:689866-689885 | None:intergenic | 40.0% | |
| ACAGAACCATCTTCTCCAAA+TGG | - | chr5.4:689804-689823 | MS.gene046935:CDS | 40.0% | |
| ATCGGTACTAAGAGTCTCTT+TGG | + | chr5.4:689481-689500 | None:intergenic | 40.0% | |
| ATGCTATCCTAGTGAGTTTG+TGG | - | chr5.4:688973-688992 | MS.gene046935:intron | 40.0% | |
| ATGGGATGAGAGAGTTTATG+TGG | - | chr5.4:689929-689948 | MS.gene046935:CDS | 40.0% | |
| CACTCTCAATAAGCTCTCAA+CGG | - | chr5.4:688731-688750 | MS.gene046935:intron | 40.0% | |
| CAGAACCATCTTCTCCAAAT+GGG | - | chr5.4:689805-689824 | MS.gene046935:CDS | 40.0% | |
| CTCTTGAACGAAAGGAGTAA+CGG | + | chr5.4:688037-688056 | None:intergenic | 40.0% | |
| GAAGTCAATTTATCAAGCGC+AGG | + | chr5.4:688240-688259 | None:intergenic | 40.0% | |
| GAAGTCACTTCAACAGCAAT+TGG | - | chr5.4:688404-688423 | MS.gene046935:intron | 40.0% | |
| GAGAAGAAGAACTTCGTTTG+CGG | + | chr5.4:687998-688017 | None:intergenic | 40.0% | |
| GATGTTAATCAAACTGGACC+AGG | - | chr5.4:688489-688508 | MS.gene046935:intron | 40.0% | |
| GCTTACTTTGTTCAGATCGA+CGG | - | chr5.4:688708-688727 | MS.gene046935:intron | 40.0% | |
| TGGGACCATATTCTTGTATG+TGG | - | chr5.4:689972-689991 | MS.gene046935:CDS | 40.0% | |
| TTCAACAGTGTCTTCATCAG+AGG | + | chr5.4:688436-688455 | None:intergenic | 40.0% | |
| ! | AGAGAGTTTATGTGGACTGT+TGG | - | chr5.4:689937-689956 | MS.gene046935:CDS | 40.0% |
| ! | TGAAGCAGCTTGTAGTGTTT+TGG | - | chr5.4:688179-688198 | MS.gene046935:intron | 40.0% |
| AAGGTACAAGCGTTCGTCAA+TGG | - | chr5.4:687788-687807 | MS.gene046935:CDS | 45.0% | |
| AATCAGGAAGATTCTCACGG+CGG | - | chr5.4:688111-688130 | MS.gene046935:intron | 45.0% | |
| AATGGGAGTCATGTTGACCA+CGG | - | chr5.4:689822-689841 | MS.gene046935:CDS | 45.0% | |
| AGGAGAGGTGAATTATGAGG+AGG | - | chr5.4:688548-688567 | MS.gene046935:intron | 45.0% | |
| AGGAGGAGAGGTGAATTATG+AGG | - | chr5.4:688545-688564 | MS.gene046935:intron | 45.0% | |
| AGTCTTCTCCTCGTGGTAAT+CGG | + | chr5.4:689499-689518 | None:intergenic | 45.0% | |
| ATTATCAGGACGAGGAGTAG+TGG | + | chr5.4:688094-688113 | None:intergenic | 45.0% | |
| CACCACTAAGCTTGATGTTG+AGG | - | chr5.4:688665-688684 | MS.gene046935:intron | 45.0% | |
| CTCAACATCAAGCTTAGTGG+TGG | + | chr5.4:688667-688686 | None:intergenic | 45.0% | |
| CTCCTCAACATCAAGCTTAG+TGG | + | chr5.4:688670-688689 | None:intergenic | 45.0% | |
| GCTTGAAGCTCTTGAACGAA+AGG | + | chr5.4:688045-688064 | None:intergenic | 45.0% | |
| GGTGAATTATGAGGAGGATG+AGG | - | chr5.4:688554-688573 | MS.gene046935:intron | 45.0% | |
| GTACCTTTCTTCCGAATTGC+CGG | + | chr5.4:687775-687794 | None:intergenic | 45.0% | |
| TACTCCTCGTCCTGATAATC+AGG | - | chr5.4:688095-688114 | MS.gene046935:intron | 45.0% | |
| TCCAGCGCAACGAATTCAAA+CGG | + | chr5.4:688150-688169 | None:intergenic | 45.0% | |
| TCCCAGTAATCGCAACCAAA+CGG | + | chr5.4:688308-688327 | None:intergenic | 45.0% | |
| TCGAATTTAAGGGATAGCCG+CGG | - | chr5.4:688612-688631 | MS.gene046935:intron | 45.0% | |
| TCGTCAGATTAAGAGCCGTT+TGG | - | chr5.4:688290-688309 | MS.gene046935:intron | 45.0% | |
| TCTTCCTGATTATCAGGACG+AGG | + | chr5.4:688102-688121 | None:intergenic | 45.0% | |
| TGACTCCCATTTGGAGAAGA+TGG | + | chr5.4:689813-689832 | None:intergenic | 45.0% | |
| TGCTCTTTCTCTTCCGAGAA+CGG | + | chr5.4:687938-687957 | None:intergenic | 45.0% | |
| TGCTGAGATATCGTTGGAAG+CGG | - | chr5.4:688512-688531 | MS.gene046935:intron | 45.0% | |
| TGGTCAACATGACTCCCATT+TGG | + | chr5.4:689822-689841 | None:intergenic | 45.0% | |
| TTTCTTCCGAATTGCCGGTA+CGG | + | chr5.4:687770-687789 | None:intergenic | 45.0% | |
| TTTGGTTGCGATTACTGGGA+GGG | - | chr5.4:688308-688327 | MS.gene046935:intron | 45.0% | |
| ! | ATATCGTTGGAAGCGGGTTT+AGG | - | chr5.4:688519-688538 | MS.gene046935:intron | 45.0% |
| ! | ATGGTTTGTACTTGAGGCCT+TGG | - | chr5.4:689250-689269 | MS.gene046935:CDS | 45.0% |
| ! | ATTTGGGATCCCGTTTGGAT+CGG | + | chr5.4:689450-689469 | None:intergenic | 45.0% |
| ! | GACTTATTTGGGATCCCGTT+TGG | + | chr5.4:689455-689474 | None:intergenic | 45.0% |
| ! | GACTTGATGGTCTGTACTTG+AGG | - | chr5.4:689515-689534 | MS.gene046935:CDS | 45.0% |
| ! | GAGTTTATGTGGACTGTTGG+CGG | - | chr5.4:689940-689959 | MS.gene046935:CDS | 45.0% |
| ! | GATAAGTTCAAGGGCCCTTT+TGG | - | chr5.4:689081-689100 | MS.gene046935:CDS | 45.0% |
| ! | GGTTGTCTTGTTGAAGCTGA+GGG | - | chr5.4:689732-689751 | MS.gene046935:CDS | 45.0% |
| ! | TGAACGAAAGGAGTAACGGA+AGG | + | chr5.4:688033-688052 | None:intergenic | 45.0% |
| ! | TGGTTGTCTTGTTGAAGCTG+AGG | - | chr5.4:689731-689750 | MS.gene046935:CDS | 45.0% |
| ! | TGTATGTGGTTGCTATTGCC+TGG | - | chr5.4:689986-690005 | MS.gene046935:CDS | 45.0% |
| ! | TTCGTGATGACGAAGAATCC+TGG | + | chr5.4:688067-688086 | None:intergenic | 45.0% |
| !! | GGAGTATGTTGATGACACAG+AGG | - | chr5.4:689753-689772 | MS.gene046935:CDS | 45.0% |
| !! | TCTTAGTACCGATTACCACG+AGG | - | chr5.4:689488-689507 | MS.gene046935:CDS | 45.0% |
| ACCACGAGGAGAAGACTTGA+TGG | - | chr5.4:689502-689521 | MS.gene046935:CDS | 50.0% | |
| ACCATCAAGTCTTCTCCTCG+TGG | + | chr5.4:689506-689525 | None:intergenic | 50.0% | |
| AGCAAAGACGCTGGAACAAG+AGG | - | chr5.4:688209-688228 | MS.gene046935:intron | 50.0% | |
| AGCCGTTTGGTTGCGATTAC+TGG | - | chr5.4:688303-688322 | MS.gene046935:intron | 50.0% | |
| ATGGTCTGTACTTGAGGCCT+TGG | - | chr5.4:689521-689540 | MS.gene046935:CDS | 50.0% | |
| GCCGTTTGGTTGCGATTACT+GGG | - | chr5.4:688304-688323 | MS.gene046935:intron | 50.0% | |
| GCTGAGATATCGTTGGAAGC+GGG | - | chr5.4:688513-688532 | MS.gene046935:intron | 50.0% | |
| GTTTGGTTGCGATTACTGGG+AGG | - | chr5.4:688307-688326 | MS.gene046935:intron | 50.0% | |
| TACAAGCGTTCGTCAATGGC+TGG | - | chr5.4:687792-687811 | MS.gene046935:CDS | 50.0% | |
| TCCAACGATATCTCAGCACC+TGG | + | chr5.4:688510-688529 | None:intergenic | 50.0% | |
| TCCGTTTGAATTCGTTGCGC+TGG | - | chr5.4:688146-688165 | MS.gene046935:intron | 50.0% | |
| TCGTTCAAGAGCTTCAAGCC+AGG | - | chr5.4:688046-688065 | MS.gene046935:intron | 50.0% | |
| TCTTTCTCTTCCGAGAACGG+TGG | + | chr5.4:687935-687954 | None:intergenic | 50.0% | |
| TGAGGAGCTTGAGATGCTCT+TGG | - | chr5.4:688683-688702 | MS.gene046935:intron | 50.0% | |
| ! | ACCATAAAGTGCTCTCCGCT+CGG | + | chr5.4:689235-689254 | None:intergenic | 50.0% |
| ! | AGTGCCTTCGTTGTTGTTGC+TGG | - | chr5.4:689859-689878 | MS.gene046935:CDS | 50.0% |
| ! | CGTCAATGGCTGGTTGTTGA+CGG | - | chr5.4:687802-687821 | MS.gene046935:CDS | 50.0% |
| ! | GTACCGGCAATTCGGAAGAA+AGG | - | chr5.4:687769-687788 | MS.gene046935:CDS | 50.0% |
| ! | GTTCAAGGGCCCTTTTGGAT+TGG | - | chr5.4:689086-689105 | MS.gene046935:CDS | 50.0% |
| ! | TTTATGTGGACTGTTGGCGG+CGG | - | chr5.4:689943-689962 | MS.gene046935:CDS | 50.0% |
| !! | ACCAGGTGCTGAGATATCGT+TGG | - | chr5.4:688506-688525 | MS.gene046935:intron | 50.0% |
| AACGTCACCGGTAACGCCAA+CGG | - | chr5.4:687712-687731 | MS.gene046935:CDS | 55.0% | |
| ACTTACCACCAGAGTTGCCG+TGG | + | chr5.4:689842-689861 | None:intergenic | 55.0% | |
| AGGATTCGAAGGTCACGTGC+AGG | + | chr5.4:687889-687908 | None:intergenic | 55.0% | |
| ATCGCTACCGTTGGCGTTAC+CGG | + | chr5.4:687722-687741 | None:intergenic | 55.0% | |
| CAAGCGTTTGTGCTTGCACC+AGG | + | chr5.4:690007-690026 | None:intergenic | 55.0% | |
| CATGTTGACCACGGCAACTC+TGG | - | chr5.4:689831-689850 | MS.gene046935:CDS | 55.0% | |
| CTCGATTACCTGTGCTTCGC+CGG | + | chr5.4:687830-687849 | None:intergenic | 55.0% | |
| CTCTTCCGAGAACGGTGGAA+GGG | + | chr5.4:687930-687949 | None:intergenic | 55.0% | |
| GAAGCACAGGTAATCGAGGC+CGG | - | chr5.4:687832-687851 | MS.gene046935:CDS | 55.0% | |
| GGAGAGTGAAGCAAAGACGC+TGG | - | chr5.4:688200-688219 | MS.gene046935:intron | 55.0% | |
| GGATTCGAAGGTCACGTGCA+GGG | + | chr5.4:687888-687907 | None:intergenic | 55.0% | |
| GTGCAAGCACAAACGCTTGC+TGG | - | chr5.4:690008-690027 | MS.gene046935:CDS | 55.0% | |
| TAGTGCTTGCACGTGTTCCG+CGG | + | chr5.4:688632-688651 | None:intergenic | 55.0% | |
| TCCTACCCTTCCACCGTTCT+CGG | - | chr5.4:687922-687941 | MS.gene046935:CDS | 55.0% | |
| TCTCTTCCGAGAACGGTGGA+AGG | + | chr5.4:687931-687950 | None:intergenic | 55.0% | |
| TGCACGTGACCTTCGAATCC+TGG | - | chr5.4:687888-687907 | MS.gene046935:CDS | 55.0% | |
| TGGAAGGGTAGGAGAGGAGA+GGG | + | chr5.4:687915-687934 | None:intergenic | 55.0% | |
| ! | ACGCATGATGGCGTGCTTTC+CGG | + | chr5.4:687854-687873 | None:intergenic | 55.0% |
| ! | TCGTTGGAAGCGGGTTTAGG+AGG | - | chr5.4:688522-688541 | MS.gene046935:intron | 55.0% |
| ! | TTGGAAGCGGGTTTAGGAGG+AGG | - | chr5.4:688525-688544 | MS.gene046935:intron | 55.0% |
| !! | ACCGAGCGGAGAGCACTTTA+TGG | - | chr5.4:689231-689250 | MS.gene046935:CDS | 55.0% |
| AACGGTAGCGATGACCGGTG+GGG | - | chr5.4:687730-687749 | MS.gene046935:CDS | 60.0% | |
| ACGCCAACGGTAGCGATGAC+CGG | - | chr5.4:687725-687744 | MS.gene046935:CDS | 60.0% | |
| AGTGCTCTCCGCTCGGTAGT+CGG | + | chr5.4:689228-689247 | None:intergenic | 60.0% | |
| CAACGGTAGCGATGACCGGT+GGG | - | chr5.4:687729-687748 | MS.gene046935:CDS | 60.0% | |
| CACGCCATCATGCGTCGTAC+CGG | - | chr5.4:687859-687878 | MS.gene046935:CDS | 60.0% | |
| CGGCGAAGCACAGGTAATCG+AGG | - | chr5.4:687828-687847 | MS.gene046935:CDS | 60.0% | |
| CTTCCGAATTGCCGGTACGG+CGG | + | chr5.4:687767-687786 | None:intergenic | 60.0% | |
| GAACGGTGGAAGGGTAGGAG+AGG | + | chr5.4:687921-687940 | None:intergenic | 60.0% | |
| GGAGAGGGTCCAGGATTCGA+AGG | + | chr5.4:687900-687919 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGAGGAGGAG+AGG | - | chr5.4:688533-688552 | MS.gene046935:intron | 60.0% | |
| GTGGAAGGGTAGGAGAGGAG+AGG | + | chr5.4:687916-687935 | None:intergenic | 60.0% | |
| GTTGACCACGGCAACTCTGG+TGG | - | chr5.4:689834-689853 | MS.gene046935:CDS | 60.0% | |
| TCCGAGAACGGTGGAAGGGT+AGG | + | chr5.4:687926-687945 | None:intergenic | 60.0% | |
| TTCGAAGGTCACGTGCAGGG+AGG | + | chr5.4:687885-687904 | None:intergenic | 60.0% | |
| ! | GAAGCGGGTTTAGGAGGAGG+AGG | - | chr5.4:688528-688547 | MS.gene046935:intron | 60.0% |
| ! | TGGCTGGTTGTTGACGGCAC+CGG | - | chr5.4:687808-687827 | MS.gene046935:CDS | 60.0% |
| !! | GACGAGTACCGACTACCGAG+CGG | - | chr5.4:689217-689236 | MS.gene046935:CDS | 60.0% |
| AAGGTCACGTGCAGGGAGGC+CGG | + | chr5.4:687881-687900 | None:intergenic | 65.0% | |
| CCAACGGTAGCGATGACCGG+TGG | - | chr5.4:687728-687747 | MS.gene046935:CDS | 65.0% | |
| CCACCGGTCATCGCTACCGT+TGG | + | chr5.4:687731-687750 | None:intergenic | 65.0% | |
| GAGGCCGGTACGACGCATGA+TGG | + | chr5.4:687866-687885 | None:intergenic | 65.0% | |
| GGTAGGAGAGGAGAGGGTCC+AGG | + | chr5.4:687909-687928 | None:intergenic | 65.0% | |
| AACAGCTGCCGCCGCCGTAC+CGG | - | chr5.4:687753-687772 | MS.gene046935:CDS | 70.0% | |
| ACTGTTGGCGGCGGCACTGC+TGG | - | chr5.4:689952-689971 | MS.gene046935:CDS | 70.0% | |
| CCGAATTGCCGGTACGGCGG+CGG | + | chr5.4:687764-687783 | None:intergenic | 70.0% | |
| CTGTTGGCGGCGGCACTGCT+GGG | - | chr5.4:689953-689972 | MS.gene046935:CDS | 70.0% | |
| ! | CCGCCGCCGTACCGGCAATT+CGG | - | chr5.4:687761-687780 | MS.gene046935:CDS | 70.0% |
| !! | TGACGGCACCGGCGAAGCAC+AGG | - | chr5.4:687819-687838 | MS.gene046935:CDS | 70.0% |
| CGGCGGCAGCTGTTCCCCAC+CGG | + | chr5.4:687747-687766 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 687703 | 690035 | 687703 | ID=MS.gene046935 |
| chr5.4 | mRNA | 687703 | 690035 | 687703 | ID=MS.gene046935.t1;Parent=MS.gene046935 |
| chr5.4 | exon | 688986 | 690035 | 688986 | ID=MS.gene046935.t1.exon1;Parent=MS.gene046935.t1 |
| chr5.4 | CDS | 688986 | 690035 | 688986 | ID=cds.MS.gene046935.t1;Parent=MS.gene046935.t1 |
| chr5.4 | exon | 687703 | 687990 | 687703 | ID=MS.gene046935.t1.exon2;Parent=MS.gene046935.t1 |
| chr5.4 | CDS | 687703 | 687990 | 687703 | ID=cds.MS.gene046935.t1;Parent=MS.gene046935.t1 |
| Gene Sequence |
| Protein sequence |
