Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024949.t1 | XP_003610633.1 | 96.2 | 446 | 12 | 3 | 1 | 443 | 1 | 444 | 1.20E-230 | 808.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024949.t1 | Q9LJN2 | 64.7 | 450 | 113 | 7 | 31 | 443 | 44 | 484 | 4.9e-137 | 489.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024949.t1 | G7K0Y3 | 96.2 | 446 | 12 | 3 | 1 | 443 | 1 | 444 | 8.4e-231 | 808.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024949 | MS.gene063967 | PPI |
| MS.gene90371 | MS.gene024949 | PPI |
| MS.gene054723 | MS.gene024949 | PPI |
| MS.gene063969 | MS.gene024949 | PPI |
| MS.gene024949 | MS.gene90372 | PPI |
| MS.gene98061 | MS.gene024949 | PPI |
| MS.gene024949 | MS.gene83528 | PPI |
| MS.gene024949 | MS.gene071246 | PPI |
| MS.gene40853 | MS.gene024949 | PPI |
| MS.gene024949 | MS.gene067486 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024949.t1 | MTR_5g005240 | 96.188 | 446 | 12 | 3 | 1 | 443 | 1 | 444 | 0.0 | 866 |
| MS.gene024949.t1 | MTR_1g106065 | 55.944 | 429 | 159 | 9 | 24 | 443 | 12 | 419 | 5.44e-149 | 430 |
| MS.gene024949.t1 | MTR_8g094880 | 44.565 | 460 | 170 | 7 | 15 | 441 | 15 | 422 | 7.27e-119 | 353 |
| MS.gene024949.t1 | MTR_8g094905 | 44.565 | 460 | 170 | 7 | 15 | 441 | 15 | 422 | 7.27e-119 | 353 |
| MS.gene024949.t1 | MTR_2g105270 | 47.356 | 435 | 183 | 9 | 24 | 442 | 42 | 446 | 8.21e-116 | 347 |
| MS.gene024949.t1 | MTR_5g045590 | 40.000 | 435 | 207 | 9 | 12 | 442 | 19 | 403 | 2.49e-95 | 293 |
| MS.gene024949.t1 | MTR_8g088670 | 39.468 | 451 | 194 | 11 | 5 | 442 | 36 | 420 | 6.34e-95 | 292 |
| MS.gene024949.t1 | MTR_2g105270 | 48.747 | 359 | 144 | 6 | 21 | 364 | 39 | 372 | 2.05e-94 | 291 |
| MS.gene024949.t1 | MTR_1g040495 | 40.521 | 422 | 182 | 8 | 24 | 437 | 5 | 365 | 5.29e-94 | 288 |
| MS.gene024949.t1 | MTR_2g105270 | 46.591 | 352 | 148 | 6 | 13 | 349 | 31 | 357 | 8.82e-85 | 264 |
| MS.gene024949.t1 | MTR_7g096170 | 43.128 | 422 | 179 | 10 | 21 | 434 | 12 | 380 | 6.52e-83 | 260 |
| MS.gene024949.t1 | MTR_7g096170 | 44.560 | 386 | 156 | 8 | 21 | 399 | 12 | 346 | 2.23e-80 | 253 |
| MS.gene024949.t1 | MTR_7g096170 | 44.699 | 349 | 135 | 8 | 21 | 362 | 12 | 309 | 2.37e-67 | 218 |
| MS.gene024949.t1 | MTR_8g088670 | 37.535 | 357 | 150 | 8 | 5 | 349 | 36 | 331 | 1.35e-64 | 212 |
| MS.gene024949.t1 | MTR_8g088670 | 37.571 | 354 | 148 | 8 | 5 | 346 | 36 | 328 | 2.24e-64 | 211 |
| MS.gene024949.t1 | MTR_7g096170 | 39.403 | 335 | 143 | 9 | 107 | 434 | 2 | 283 | 1.09e-47 | 166 |
| MS.gene024949.t1 | MTR_1g040475 | 44.737 | 190 | 98 | 3 | 34 | 221 | 20 | 204 | 2.22e-42 | 150 |
| MS.gene024949.t1 | MTR_2g100150 | 55.901 | 161 | 36 | 7 | 32 | 188 | 15 | 144 | 3.67e-39 | 139 |
| MS.gene024949.t1 | MTR_1g076210 | 48.980 | 147 | 68 | 3 | 299 | 442 | 246 | 388 | 2.08e-34 | 132 |
| MS.gene024949.t1 | MTR_1g093280 | 48.980 | 147 | 68 | 3 | 299 | 442 | 246 | 388 | 2.08e-34 | 132 |
| MS.gene024949.t1 | MTR_1g093370 | 50.420 | 119 | 56 | 1 | 324 | 442 | 51 | 166 | 7.86e-30 | 114 |
| MS.gene024949.t1 | MTR_1g076220 | 50.420 | 119 | 56 | 1 | 324 | 442 | 113 | 228 | 1.84e-29 | 115 |
| MS.gene024949.t1 | MTR_1g076220 | 56.000 | 50 | 22 | 0 | 185 | 234 | 53 | 102 | 2.05e-11 | 64.3 |
| MS.gene024949.t1 | MTR_1g055050 | 53.968 | 126 | 39 | 4 | 116 | 241 | 35 | 141 | 8.54e-28 | 111 |
| MS.gene024949.t1 | MTR_2g059110 | 55.000 | 80 | 36 | 0 | 24 | 103 | 8 | 87 | 6.50e-23 | 93.2 |
| MS.gene024949.t1 | MTR_2g059120 | 62.121 | 66 | 25 | 0 | 38 | 103 | 20 | 85 | 3.74e-20 | 85.5 |
| MS.gene024949.t1 | MTR_1g040455 | 38.298 | 94 | 55 | 1 | 349 | 442 | 7 | 97 | 6.56e-15 | 70.9 |
| MS.gene024949.t1 | MTR_2g084565 | 23.301 | 412 | 219 | 13 | 38 | 442 | 123 | 444 | 4.19e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene024949.t1 | AT3G19640 | 64.000 | 450 | 110 | 7 | 34 | 443 | 47 | 484 | 0.0 | 526 |
| MS.gene024949.t1 | AT1G16010 | 45.415 | 458 | 193 | 10 | 3 | 442 | 22 | 440 | 3.16e-114 | 342 |
| MS.gene024949.t1 | AT1G16010 | 45.415 | 458 | 193 | 10 | 3 | 442 | 22 | 440 | 3.16e-114 | 342 |
| MS.gene024949.t1 | AT1G16010 | 45.415 | 458 | 193 | 10 | 3 | 442 | 22 | 440 | 3.16e-114 | 342 |
| MS.gene024949.t1 | AT1G80900 | 46.437 | 435 | 186 | 7 | 21 | 442 | 40 | 440 | 3.22e-114 | 342 |
| MS.gene024949.t1 | AT1G80900 | 46.437 | 435 | 186 | 7 | 21 | 442 | 40 | 440 | 3.22e-114 | 342 |
| MS.gene024949.t1 | AT5G09690 | 43.721 | 430 | 181 | 6 | 17 | 442 | 12 | 384 | 9.48e-104 | 314 |
| MS.gene024949.t1 | AT5G09690 | 43.721 | 430 | 181 | 6 | 17 | 442 | 23 | 395 | 1.07e-103 | 314 |
| MS.gene024949.t1 | AT5G09690 | 46.253 | 387 | 150 | 5 | 17 | 399 | 23 | 355 | 4.69e-100 | 304 |
| MS.gene024949.t1 | AT3G58970 | 41.055 | 436 | 202 | 7 | 15 | 442 | 46 | 434 | 1.65e-99 | 305 |
| MS.gene024949.t1 | AT2G03620 | 41.190 | 420 | 207 | 8 | 23 | 442 | 40 | 419 | 6.88e-95 | 292 |
| MS.gene024949.t1 | AT2G03620 | 41.190 | 420 | 207 | 8 | 23 | 442 | 40 | 419 | 6.88e-95 | 292 |
| MS.gene024949.t1 | AT5G09690 | 45.355 | 366 | 136 | 5 | 17 | 375 | 12 | 320 | 1.30e-89 | 275 |
| MS.gene024949.t1 | AT5G09690 | 45.961 | 359 | 140 | 4 | 17 | 373 | 12 | 318 | 2.17e-89 | 275 |
| MS.gene024949.t1 | AT5G09690 | 45.152 | 361 | 144 | 4 | 17 | 375 | 23 | 331 | 9.08e-86 | 266 |
| MS.gene024949.t1 | AT5G09690 | 45.152 | 361 | 144 | 4 | 17 | 375 | 23 | 331 | 9.08e-86 | 266 |
| MS.gene024949.t1 | AT5G09690 | 45.378 | 357 | 145 | 3 | 17 | 373 | 12 | 318 | 1.39e-85 | 265 |
| MS.gene024949.t1 | AT5G09690 | 45.378 | 357 | 145 | 3 | 17 | 373 | 23 | 329 | 2.33e-85 | 265 |
| MS.gene024949.t1 | AT5G09690 | 38.785 | 428 | 190 | 8 | 17 | 442 | 12 | 369 | 2.18e-73 | 235 |
| MS.gene024949.t1 | AT5G09690 | 53.917 | 217 | 96 | 1 | 17 | 233 | 12 | 224 | 9.21e-67 | 215 |
| MS.gene024949.t1 | AT5G09690 | 53.881 | 219 | 93 | 2 | 17 | 233 | 23 | 235 | 1.28e-66 | 215 |
| MS.gene024949.t1 | AT5G09690 | 53.881 | 219 | 93 | 2 | 17 | 233 | 23 | 235 | 1.28e-66 | 215 |
| MS.gene024949.t1 | AT5G09690 | 53.881 | 219 | 93 | 2 | 17 | 233 | 23 | 235 | 1.28e-66 | 215 |
| MS.gene024949.t1 | AT4G28580 | 33.487 | 433 | 204 | 11 | 25 | 443 | 46 | 408 | 1.39e-66 | 219 |
| MS.gene024949.t1 | AT5G09720 | 48.837 | 215 | 102 | 2 | 21 | 233 | 8 | 216 | 5.26e-58 | 192 |
| MS.gene024949.t1 | AT5G09720 | 48.837 | 215 | 102 | 2 | 21 | 233 | 8 | 216 | 5.26e-58 | 192 |
| MS.gene024949.t1 | AT5G64560 | 47.794 | 136 | 67 | 2 | 307 | 442 | 261 | 392 | 8.23e-32 | 125 |
| MS.gene024949.t1 | AT5G64560 | 50.806 | 124 | 44 | 3 | 307 | 430 | 261 | 367 | 2.89e-29 | 118 |
| MS.gene024949.t1 | AT5G22830 | 29.016 | 193 | 118 | 4 | 37 | 225 | 135 | 312 | 2.93e-11 | 65.5 |
| MS.gene024949.t1 | AT5G22830 | 29.016 | 193 | 118 | 4 | 37 | 225 | 135 | 312 | 2.93e-11 | 65.5 |
Find 123 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTGGTGCTTCGAATTTA+AGG | 0.165870 | 5.4:-574639 | MS.gene024949:CDS |
| ACGCATGATGGCGTGCTTTC+CGG | 0.208340 | 5.4:+575389 | None:intergenic |
| AGCCGTTTGGTTGCGATTAC+TGG | 0.222757 | 5.4:-574937 | MS.gene024949:CDS |
| GAAGATTAGTACTCTCAATT+TGG | 0.225739 | 5.4:-574980 | MS.gene024949:CDS |
| ACTGTTGGCGGCGGCACTGC+TGG | 0.245438 | 5.4:-573288 | MS.gene024949:CDS |
| CCGGTCATCGTTGGCGTTAC+CGG | 0.262650 | 5.4:+575515 | None:intergenic |
| TGAAGCAGCTTGTAGTGTTT+TGG | 0.284919 | 5.4:-575061 | MS.gene024949:CDS |
| ATATCGTTGGAAGCGGGTTT+AGG | 0.335773 | 5.4:-574721 | MS.gene024949:CDS |
| GTGCAAGCACAAACGCTTGC+TGG | 0.343936 | 5.4:-573232 | MS.gene024949:CDS |
| GTACCTTTCTTCCGAATTGC+CGG | 0.346470 | 5.4:+575468 | None:intergenic |
| TCCTACCCTTCCACCGTTCT+CGG | 0.346952 | 5.4:-575318 | MS.gene024949:CDS |
| AGTGCCTTCGTTGTTGTTGC+TGG | 0.353794 | 5.4:-573381 | MS.gene024949:CDS |
| CTGTTGGCGGCGGCACTGCT+GGG | 0.366005 | 5.4:-573287 | MS.gene024949:CDS |
| TGCTCCTCGTCCTGATAATC+AGG | 0.376856 | 5.4:-575145 | MS.gene024949:CDS |
| TGAGAATCTTCCTGATTATC+AGG | 0.379240 | 5.4:+575135 | None:intergenic |
| GTTTGGTGCTTCGAATTTAA+GGG | 0.389449 | 5.4:-574638 | MS.gene024949:CDS |
| GGTGTTGATGTTAATCAAAC+TGG | 0.400482 | 5.4:-574757 | MS.gene024949:CDS |
| CTGTTTGATGATAAATTGTA+TGG | 0.401637 | 5.4:-573330 | MS.gene024949:CDS |
| CAAGCGTTTGTGCTTGCACC+AGG | 0.405920 | 5.4:+573236 | None:intergenic |
| TGCTCTTTCTCTTCCGAGAA+CGG | 0.416716 | 5.4:+575305 | None:intergenic |
| TGCACGTGACCTTCGAATCC+TGG | 0.419970 | 5.4:-575352 | MS.gene024949:CDS |
| GATCATGATGTTCATGATAA+TGG | 0.430175 | 5.4:-574778 | MS.gene024949:CDS |
| GAAGTCACTTCAACAGCAAT+TGG | 0.436400 | 5.4:-574836 | MS.gene024949:CDS |
| AGCAACCACATACAAGAATA+TGG | 0.438257 | 5.4:+573263 | None:intergenic |
| ACAGAACCATCTTCTCCAAA+TGG | 0.439397 | 5.4:-573436 | MS.gene024949:CDS |
| CCGCCGCCGTACCGGCAATT+CGG | 0.439847 | 5.4:-575479 | MS.gene024949:CDS |
| CTCGATTACCTGTGCTTCGC+CGG | 0.441216 | 5.4:+575413 | None:intergenic |
| CTCCTCAACATCAAGCTTAG+TGG | 0.445396 | 5.4:+574573 | None:intergenic |
| TGTATGTGGTTGCTATTGCC+TGG | 0.445914 | 5.4:-573254 | MS.gene024949:CDS |
| AACAGCCGCCGCCGCCGTAC+CGG | 0.447305 | 5.4:-575487 | MS.gene024949:CDS |
| AATTCTAGAGAGCAAATGTT+TGG | 0.448954 | 5.4:-574655 | MS.gene024949:CDS |
| TGACTCCCATTTGGAGAAGA+TGG | 0.450914 | 5.4:+573430 | None:intergenic |
| GCTTGATGATGATGAAGATA+TGG | 0.464583 | 5.4:-574878 | MS.gene024949:CDS |
| AATTGCCGGTACGGCGGCGG+CGG | 0.465378 | 5.4:+575482 | None:intergenic |
| TGAGGAGCTTGAGATGCTCT+TGG | 0.467583 | 5.4:-574557 | MS.gene024949:CDS |
| AGGAGGAGAGGTGAATTATG+AGG | 0.467721 | 5.4:-574695 | MS.gene024949:CDS |
| TCCGTTTGAATTCGTTGCGC+TGG | 0.471296 | 5.4:-575094 | MS.gene024949:CDS |
| CCGAATTGCCGGTACGGCGG+CGG | 0.474107 | 5.4:+575479 | None:intergenic |
| CATGTTGACCACGGCAACTC+TGG | 0.474836 | 5.4:-573409 | MS.gene024949:CDS |
| GAGAAGAAGAACTTCGTTTG+CGG | 0.477402 | 5.4:+575245 | None:intergenic |
| GCCGTTTGGTTGCGATTACT+GGG | 0.478784 | 5.4:-574936 | MS.gene024949:CDS |
| GGTGAATTATGAGGAGGATG+AGG | 0.479462 | 5.4:-574686 | MS.gene024949:CDS |
| TTCGTGATGACGAAGAATCC+TGG | 0.480391 | 5.4:+575176 | None:intergenic |
| GGTAGGAGAGGAGAGGGTCC+AGG | 0.480489 | 5.4:+575334 | None:intergenic |
| GAGTTTATGTGGACTGTTGG+CGG | 0.482690 | 5.4:-573300 | MS.gene024949:CDS |
| GAAGCGGGTTTAGGAGGAGG+AGG | 0.484156 | 5.4:-574712 | MS.gene024949:CDS |
| CGTCAATGGCTGGTTGTTGA+CGG | 0.484415 | 5.4:-575438 | MS.gene024949:CDS |
| CACGCCATCATGCGTCGTAC+CGG | 0.485557 | 5.4:-575381 | MS.gene024949:CDS |
| CCGGTAACGCCAACGATGAC+CGG | 0.485628 | 5.4:-575515 | MS.gene024949:CDS |
| TTGGAAGCGGGTTTAGGAGG+AGG | 0.490530 | 5.4:-574715 | MS.gene024949:CDS |
| GGGTTTAGGAGGAGGAGGAG+AGG | 0.493637 | 5.4:-574707 | MS.gene024949:CDS |
| TGGTCAACATGACTCCCATT+TGG | 0.493890 | 5.4:+573421 | None:intergenic |
| AAGGTACAAGCGTTCGTCAA+TGG | 0.506236 | 5.4:-575452 | MS.gene024949:CDS |
| AGGATTCGAAGGTCACGTGC+AGG | 0.509325 | 5.4:+575354 | None:intergenic |
| TGGGACCATATTCTTGTATG+TGG | 0.512820 | 5.4:-573268 | MS.gene024949:CDS |
| TTATCATGAACATCATGATC+AGG | 0.515588 | 5.4:+574781 | None:intergenic |
| CAGAACCATCTTCTCCAAAT+GGG | 0.517721 | 5.4:-573435 | MS.gene024949:CDS |
| TTTGGTTGCGATTACTGGGA+GGG | 0.518348 | 5.4:-574932 | MS.gene024949:CDS |
| AAGGTCACGTGCAGGGAGGC+CGG | 0.519707 | 5.4:+575362 | None:intergenic |
| TCGTCAGATTAAGAGCCGTT+TGG | 0.523284 | 5.4:-574950 | MS.gene024949:CDS |
| TCGTTCAAGAGCTTCAAGCC+AGG | 0.526920 | 5.4:-575194 | MS.gene024949:CDS |
| TACAAGCGTTCGTCAATGGC+TGG | 0.527925 | 5.4:-575448 | MS.gene024949:CDS |
| TGCTGAGATATCGTTGGAAG+CGG | 0.529462 | 5.4:-574728 | MS.gene024949:CDS |
| TGTTCCCCACCGGTCATCGT+TGG | 0.533388 | 5.4:+575506 | None:intergenic |
| TGGCTGGTTGTTGACGGCAC+CGG | 0.538585 | 5.4:-575432 | MS.gene024949:CDS |
| CGGCGGCGGCTGTTCCCCAC+CGG | 0.539900 | 5.4:+575496 | None:intergenic |
| TGACGGCACCGGCGAAGCAC+AGG | 0.542644 | 5.4:-575421 | MS.gene024949:CDS |
| TCCCAGTAATCGCAACCAAA+CGG | 0.543100 | 5.4:+574935 | None:intergenic |
| TCTCTTCCGAGAACGGTGGA+AGG | 0.543564 | 5.4:+575312 | None:intergenic |
| TTCAACAGTGTCTTCATCAG+AGG | 0.545221 | 5.4:+574807 | None:intergenic |
| GAAGTCAATTTATCAAGCGC+AGG | 0.545824 | 5.4:+575003 | None:intergenic |
| GCTGAGATATCGTTGGAAGC+GGG | 0.545841 | 5.4:-574727 | MS.gene024949:CDS |
| CACCACTAAGCTTGATGTTG+AGG | 0.552846 | 5.4:-574575 | MS.gene024949:CDS |
| TCCAGCGCAACGAATTCAAA+CGG | 0.553760 | 5.4:+575093 | None:intergenic |
| GGAGAGGGTCCAGGATTCGA+AGG | 0.557929 | 5.4:+575343 | None:intergenic |
| TTTCTTCCGAATTGCCGGTA+CGG | 0.558235 | 5.4:+575473 | None:intergenic |
| AAGATGCGAGGAAACGTCAC+CGG | 0.560599 | 5.4:-575534 | MS.gene024949:CDS |
| ATGGGATGAGAGAGTTTATG+TGG | 0.562365 | 5.4:-573311 | MS.gene024949:CDS |
| CTCTTGAACGAAAGGAGTAA+CGG | 0.563746 | 5.4:+575206 | None:intergenic |
| TCGTTGGAAGCGGGTTTAGG+AGG | 0.564325 | 5.4:-574718 | MS.gene024949:CDS |
| GAAGCACAGGTAATCGAGGC+CGG | 0.564508 | 5.4:-575408 | MS.gene024949:CDS |
| GCTTACTTTGTTCAGATCGA+CGG | 0.566014 | 5.4:-574532 | MS.gene024949:CDS |
| GCTTGAAGCTCTTGAACGAA+AGG | 0.572210 | 5.4:+575198 | None:intergenic |
| CTCTTCCGAGAACGGTGGAA+GGG | 0.575974 | 5.4:+575313 | None:intergenic |
| GTACCGGCAATTCGGAAGAA+AGG | 0.580132 | 5.4:-575471 | MS.gene024949:CDS |
| TGGAAGGGTAGGAGAGGAGA+GGG | 0.581421 | 5.4:+575328 | None:intergenic |
| ACCAGGTGCTGAGATATCGT+TGG | 0.584563 | 5.4:-574734 | MS.gene024949:CDS |
| AGGAGAGGTGAATTATGAGG+AGG | 0.586365 | 5.4:-574692 | MS.gene024949:CDS |
| GAGGCCGGTACGACGCATGA+TGG | 0.587077 | 5.4:+575377 | None:intergenic |
| AGAGAGTTTATGTGGACTGT+TGG | 0.592926 | 5.4:-573303 | MS.gene024949:CDS |
| GGAGAGTGAAGCAAAGACGC+TGG | 0.597867 | 5.4:-575040 | MS.gene024949:CDS |
| TAACGCCAACGATGACCGGT+GGG | 0.598695 | 5.4:-575511 | MS.gene024949:CDS |
| TTTATGTGGACTGTTGGCGG+CGG | 0.601940 | 5.4:-573297 | MS.gene024949:CDS |
| AGCAAAGACGCTGGAACAAG+AGG | 0.602892 | 5.4:-575031 | MS.gene024949:CDS |
| CTTCCGAATTGCCGGTACGG+CGG | 0.605828 | 5.4:+575476 | None:intergenic |
| CACTCTCAATAAGCTCTCAA+CGG | 0.611809 | 5.4:-574509 | MS.gene024949:intron |
| GGATTCGAAGGTCACGTGCA+GGG | 0.614484 | 5.4:+575355 | None:intergenic |
| TCCAACGATATCTCAGCACC+TGG | 0.620597 | 5.4:+574733 | None:intergenic |
| TCCGAGAACGGTGGAAGGGT+AGG | 0.621308 | 5.4:+575317 | None:intergenic |
| TGTTTGATGATAAATTGTAT+GGG | 0.621429 | 5.4:-573329 | MS.gene024949:CDS |
| GAACGGTGGAAGGGTAGGAG+AGG | 0.622247 | 5.4:+575322 | None:intergenic |
| GTTGACCACGGCAACTCTGG+TGG | 0.627812 | 5.4:-573406 | MS.gene024949:CDS |
| CTCAACATCAAGCTTAGTGG+TGG | 0.628847 | 5.4:+574576 | None:intergenic |
| TAGTGCTTGCACGTGTTCCG+CGG | 0.631370 | 5.4:+574611 | None:intergenic |
| GTTTGGTTGCGATTACTGGG+AGG | 0.636774 | 5.4:-574933 | MS.gene024949:CDS |
| GTAACGCCAACGATGACCGG+TGG | 0.639069 | 5.4:-575512 | MS.gene024949:CDS |
| ATTATCAGGACGAGGAGCAG+TGG | 0.639109 | 5.4:+575149 | None:intergenic |
| TCTTCCTGATTATCAGGACG+AGG | 0.641967 | 5.4:+575141 | None:intergenic |
| CGGCGAAGCACAGGTAATCG+AGG | 0.643846 | 5.4:-575412 | MS.gene024949:CDS |
| GTGGAAGGGTAGGAGAGGAG+AGG | 0.646101 | 5.4:+575327 | None:intergenic |
| TGAACGAAAGGAGTAACGGA+AGG | 0.650529 | 5.4:+575210 | None:intergenic |
| ACTTACCACCAGAGTTGCCG+TGG | 0.664332 | 5.4:+573401 | None:intergenic |
| AACGCCAACGATGACCGGTG+GGG | 0.664464 | 5.4:-575510 | MS.gene024949:CDS |
| GATGTTAATCAAACTGGACC+AGG | 0.673948 | 5.4:-574751 | MS.gene024949:CDS |
| AATACCAGCAACAACAACGA+AGG | 0.674729 | 5.4:+573377 | None:intergenic |
| GATAATCAGGAAGATTCTCA+CGG | 0.676638 | 5.4:-575132 | MS.gene024949:CDS |
| TCTTTCTCTTCCGAGAACGG+TGG | 0.682175 | 5.4:+575308 | None:intergenic |
| AATGGGAGTCATGTTGACCA+CGG | 0.693986 | 5.4:-573418 | MS.gene024949:CDS |
| TTCGAAGGTCACGTGCAGGG+AGG | 0.702733 | 5.4:+575358 | None:intergenic |
| TCGAATTTAAGGGATAGCCG+CGG | 0.713074 | 5.4:-574628 | MS.gene024949:CDS |
| TGATGATGATGAAGATATGG+CGG | 0.716447 | 5.4:-574875 | MS.gene024949:CDS |
| GGAGTATGTTGATGACACAG+AGG | 0.741575 | 5.4:-573487 | MS.gene024949:CDS |
| AATCAGGAAGATTCTCACGG+CGG | 0.760544 | 5.4:-575129 | MS.gene024949:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATGAGTATATATTA+TGG | - | chr5.4:575091-575110 | MS.gene024949:CDS | 10.0% |
| !! | AAATCAAGGAAATGTTAAAT+AGG | + | chr5.4:574282-574301 | None:intergenic | 20.0% |
| !! | AGATAATTATAATCAATCCA+AGG | + | chr5.4:574788-574807 | None:intergenic | 20.0% |
| !! | GATAAATTATAATCAATCCA+AGG | + | chr5.4:575059-575078 | None:intergenic | 20.0% |
| !! | TAATAGCAATTATATAAACC+AGG | + | chr5.4:575124-575143 | None:intergenic | 20.0% |
| !! | TATGAAAATTGTATCTTCAT+AGG | + | chr5.4:574817-574836 | None:intergenic | 20.0% |
| !!! | TGATTTTTCATAAACTAACT+TGG | - | chr5.4:574874-574893 | MS.gene024949:CDS | 20.0% |
| !!! | TGTTTGATGATAAATTGTAT+GGG | - | chr5.4:575429-575448 | MS.gene024949:CDS | 20.0% |
| !!! | TTTAACATTTCCTTGATTTT+AGG | - | chr5.4:574283-574302 | MS.gene024949:intron | 20.0% |
| ! | AAAAAATAAGCCAATCCAAA+AGG | + | chr5.4:574617-574636 | None:intergenic | 25.0% |
| ! | AAAAATAAGCCAATCCAAAA+GGG | + | chr5.4:574616-574635 | None:intergenic | 25.0% |
| ! | ATATATTATGGTACAATACC+TGG | - | chr5.4:575103-575122 | MS.gene024949:CDS | 25.0% |
| ! | GTTATAGAAACCTAAAATCA+AGG | + | chr5.4:574296-574315 | None:intergenic | 25.0% |
| ! | TATGTGATATGATGTTACTA+TGG | - | chr5.4:575150-575169 | MS.gene024949:CDS | 25.0% |
| !! | CTGTTTGATGATAAATTGTA+TGG | - | chr5.4:575428-575447 | MS.gene024949:CDS | 25.0% |
| !!! | CATTAGTGTTTTTAACTTGT+TGG | + | chr5.4:574342-574361 | None:intergenic | 25.0% |
| AAATCAGCTTATGAAGTAGT+AGG | - | chr5.4:574713-574732 | MS.gene024949:CDS | 30.0% | |
| ATGTCACTAGATAAGTTCAA+GGG | - | chr5.4:574590-574609 | MS.gene024949:CDS | 30.0% | |
| CAAGGAAATGTTAAATAGGA+AGG | + | chr5.4:574278-574297 | None:intergenic | 30.0% | |
| GAAGATTAGTACTCTCAATT+TGG | - | chr5.4:573778-573797 | MS.gene024949:intron | 30.0% | |
| GATCATGATGTTCATGATAA+TGG | - | chr5.4:573980-573999 | MS.gene024949:intron | 30.0% | |
| TATGTCACTAGATAAGTTCA+AGG | - | chr5.4:574589-574608 | MS.gene024949:CDS | 30.0% | |
| TCAAAAAGTGAGAGATGAAT+TGG | - | chr5.4:573850-573869 | MS.gene024949:intron | 30.0% | |
| TTATCATGAACATCATGATC+AGG | + | chr5.4:573980-573999 | None:intergenic | 30.0% | |
| ! | AATTCTAGAGAGCAAATGTT+TGG | - | chr5.4:574103-574122 | MS.gene024949:intron | 30.0% |
| ! | CTCTTTGGATTGACTTATTT+GGG | + | chr5.4:574984-575003 | None:intergenic | 30.0% |
| ! | TCTCTTTGGATTGACTTATT+TGG | + | chr5.4:574985-575004 | None:intergenic | 30.0% |
| ! | TCTTTGGATTGACTTATTTG+GGG | + | chr5.4:574983-575002 | None:intergenic | 30.0% |
| ! | TTTTTGCTTTCTGATCTAGT+TGG | - | chr5.4:574381-574400 | MS.gene024949:intron | 30.0% |
| !! | GCTGATACTTTGTTATTTGT+TGG | - | chr5.4:575229-575248 | MS.gene024949:CDS | 30.0% |
| AAAAATAAGCCGATCCAAAC+GGG | - | chr5.4:574956-574975 | MS.gene024949:CDS | 35.0% | |
| AGCAACCACATACAAGAATA+TGG | + | chr5.4:575498-575517 | None:intergenic | 35.0% | |
| CAAAAATAAGCCGATCCAAA+CGG | - | chr5.4:574955-574974 | MS.gene024949:CDS | 35.0% | |
| CTTATTTCCACAAACTCACT+AGG | + | chr5.4:574501-574520 | None:intergenic | 35.0% | |
| GATAATCAGGAAGATTCTCA+CGG | - | chr5.4:573626-573645 | MS.gene024949:intron | 35.0% | |
| TGAGAATCTTCCTGATTATC+AGG | + | chr5.4:573626-573645 | None:intergenic | 35.0% | |
| ! | CAAAGTATCAGCAACAAAGA+AGG | + | chr5.4:575221-575240 | None:intergenic | 35.0% |
| ! | CACTTTATGGTTTGTACTTG+AGG | - | chr5.4:574762-574781 | MS.gene024949:CDS | 35.0% |
| ! | TGATGATGATGAAGATATGG+CGG | - | chr5.4:573883-573902 | MS.gene024949:intron | 35.0% |
| !! | GCTTGATGATGATGAAGATA+TGG | - | chr5.4:573880-573899 | MS.gene024949:intron | 35.0% |
| !! | GGTGTTGATGTTAATCAAAC+TGG | - | chr5.4:574001-574020 | MS.gene024949:intron | 35.0% |
| !! | GTTGTTGTTGCTGGTATTTT+TGG | - | chr5.4:575386-575405 | MS.gene024949:CDS | 35.0% |
| !! | GTTTGGTGCTTCGAATTTAA+GGG | - | chr5.4:574120-574139 | MS.gene024949:intron | 35.0% |
| !! | TGTTTGGTGCTTCGAATTTA+AGG | - | chr5.4:574119-574138 | MS.gene024949:intron | 35.0% |
| !!! | GTGTTTTTAACTTGTTGGAC+TGG | + | chr5.4:574337-574356 | None:intergenic | 35.0% |
| AATACCAGCAACAACAACGA+AGG | + | chr5.4:575384-575403 | None:intergenic | 40.0% | |
| ACAGAACCATCTTCTCCAAA+TGG | - | chr5.4:575322-575341 | MS.gene024949:CDS | 40.0% | |
| ATCGGTACTAAGAGTCTCTT+TGG | + | chr5.4:574999-575018 | None:intergenic | 40.0% | |
| ATGCTATCCTAGTGAGTTTG+TGG | - | chr5.4:574491-574510 | MS.gene024949:intron | 40.0% | |
| ATGGGATGAGAGAGTTTATG+TGG | - | chr5.4:575447-575466 | MS.gene024949:CDS | 40.0% | |
| CACTCTCAATAAGCTCTCAA+CGG | - | chr5.4:574249-574268 | MS.gene024949:intron | 40.0% | |
| CAGAACCATCTTCTCCAAAT+GGG | - | chr5.4:575323-575342 | MS.gene024949:CDS | 40.0% | |
| CTCTTGAACGAAAGGAGTAA+CGG | + | chr5.4:573555-573574 | None:intergenic | 40.0% | |
| GAAGTCAATTTATCAAGCGC+AGG | + | chr5.4:573758-573777 | None:intergenic | 40.0% | |
| GAAGTCACTTCAACAGCAAT+TGG | - | chr5.4:573922-573941 | MS.gene024949:intron | 40.0% | |
| GAGAAGAAGAACTTCGTTTG+CGG | + | chr5.4:573516-573535 | None:intergenic | 40.0% | |
| GATGTTAATCAAACTGGACC+AGG | - | chr5.4:574007-574026 | MS.gene024949:intron | 40.0% | |
| GCTTACTTTGTTCAGATCGA+CGG | - | chr5.4:574226-574245 | MS.gene024949:intron | 40.0% | |
| TGGGACCATATTCTTGTATG+TGG | - | chr5.4:575490-575509 | MS.gene024949:CDS | 40.0% | |
| TTCAACAGTGTCTTCATCAG+AGG | + | chr5.4:573954-573973 | None:intergenic | 40.0% | |
| ! | AGAGAGTTTATGTGGACTGT+TGG | - | chr5.4:575455-575474 | MS.gene024949:CDS | 40.0% |
| ! | GACTTGATGATCTGTACTTG+AGG | - | chr5.4:575033-575052 | MS.gene024949:CDS | 40.0% |
| ! | TGAAGCAGCTTGTAGTGTTT+TGG | - | chr5.4:573697-573716 | MS.gene024949:intron | 40.0% |
| AAGGTACAAGCGTTCGTCAA+TGG | - | chr5.4:573306-573325 | MS.gene024949:CDS | 45.0% | |
| AATCAGGAAGATTCTCACGG+CGG | - | chr5.4:573629-573648 | MS.gene024949:intron | 45.0% | |
| AATGGGAGTCATGTTGACCA+CGG | - | chr5.4:575340-575359 | MS.gene024949:CDS | 45.0% | |
| AGGAGAGGTGAATTATGAGG+AGG | - | chr5.4:574066-574085 | MS.gene024949:intron | 45.0% | |
| AGGAGGAGAGGTGAATTATG+AGG | - | chr5.4:574063-574082 | MS.gene024949:intron | 45.0% | |
| AGTCTTCTCCTCGTGGTAAT+CGG | + | chr5.4:575017-575036 | None:intergenic | 45.0% | |
| ATCATCAAGTCTTCTCCTCG+TGG | + | chr5.4:575024-575043 | None:intergenic | 45.0% | |
| ATGATCTGTACTTGAGGCCT+TGG | - | chr5.4:575039-575058 | MS.gene024949:CDS | 45.0% | |
| CACCACTAAGCTTGATGTTG+AGG | - | chr5.4:574183-574202 | MS.gene024949:intron | 45.0% | |
| CTCAACATCAAGCTTAGTGG+TGG | + | chr5.4:574185-574204 | None:intergenic | 45.0% | |
| CTCCTCAACATCAAGCTTAG+TGG | + | chr5.4:574188-574207 | None:intergenic | 45.0% | |
| GCTTGAAGCTCTTGAACGAA+AGG | + | chr5.4:573563-573582 | None:intergenic | 45.0% | |
| GGTGAATTATGAGGAGGATG+AGG | - | chr5.4:574072-574091 | MS.gene024949:intron | 45.0% | |
| GTACCTTTCTTCCGAATTGC+CGG | + | chr5.4:573293-573312 | None:intergenic | 45.0% | |
| TCCAGCGCAACGAATTCAAA+CGG | + | chr5.4:573668-573687 | None:intergenic | 45.0% | |
| TCCCAGTAATCGCAACCAAA+CGG | + | chr5.4:573826-573845 | None:intergenic | 45.0% | |
| TCGAATTTAAGGGATAGCCG+CGG | - | chr5.4:574130-574149 | MS.gene024949:intron | 45.0% | |
| TCGTCAGATTAAGAGCCGTT+TGG | - | chr5.4:573808-573827 | MS.gene024949:intron | 45.0% | |
| TCTTCCTGATTATCAGGACG+AGG | + | chr5.4:573620-573639 | None:intergenic | 45.0% | |
| TGACTCCCATTTGGAGAAGA+TGG | + | chr5.4:575331-575350 | None:intergenic | 45.0% | |
| TGCTCTTTCTCTTCCGAGAA+CGG | + | chr5.4:573456-573475 | None:intergenic | 45.0% | |
| TGCTGAGATATCGTTGGAAG+CGG | - | chr5.4:574030-574049 | MS.gene024949:intron | 45.0% | |
| TGGTCAACATGACTCCCATT+TGG | + | chr5.4:575340-575359 | None:intergenic | 45.0% | |
| TTTCTTCCGAATTGCCGGTA+CGG | + | chr5.4:573288-573307 | None:intergenic | 45.0% | |
| TTTGGTTGCGATTACTGGGA+GGG | - | chr5.4:573826-573845 | MS.gene024949:intron | 45.0% | |
| ! | ATATCGTTGGAAGCGGGTTT+AGG | - | chr5.4:574037-574056 | MS.gene024949:intron | 45.0% |
| ! | ATGGTTTGTACTTGAGGCCT+TGG | - | chr5.4:574768-574787 | MS.gene024949:CDS | 45.0% |
| ! | GAGTTTATGTGGACTGTTGG+CGG | - | chr5.4:575458-575477 | MS.gene024949:CDS | 45.0% |
| ! | GATAAGTTCAAGGGCCCTTT+TGG | - | chr5.4:574599-574618 | MS.gene024949:CDS | 45.0% |
| ! | GGTTGTCTTGTTGAAGCTGA+GGG | - | chr5.4:575250-575269 | MS.gene024949:CDS | 45.0% |
| ! | TGAACGAAAGGAGTAACGGA+AGG | + | chr5.4:573551-573570 | None:intergenic | 45.0% |
| ! | TGGTTGTCTTGTTGAAGCTG+AGG | - | chr5.4:575249-575268 | MS.gene024949:CDS | 45.0% |
| ! | TGTATGTGGTTGCTATTGCC+TGG | - | chr5.4:575504-575523 | MS.gene024949:CDS | 45.0% |
| ! | TTCGTGATGACGAAGAATCC+TGG | + | chr5.4:573585-573604 | None:intergenic | 45.0% |
| !! | GGAGTATGTTGATGACACAG+AGG | - | chr5.4:575271-575290 | MS.gene024949:CDS | 45.0% |
| !! | TCTTAGTACCGATTACCACG+AGG | - | chr5.4:575006-575025 | MS.gene024949:CDS | 45.0% |
| AGCAAAGACGCTGGAACAAG+AGG | - | chr5.4:573727-573746 | MS.gene024949:intron | 50.0% | |
| AGCCGTTTGGTTGCGATTAC+TGG | - | chr5.4:573821-573840 | MS.gene024949:intron | 50.0% | |
| ATTATCAGGACGAGGAGCAG+TGG | + | chr5.4:573612-573631 | None:intergenic | 50.0% | |
| GCCGTTTGGTTGCGATTACT+GGG | - | chr5.4:573822-573841 | MS.gene024949:intron | 50.0% | |
| GCTGAGATATCGTTGGAAGC+GGG | - | chr5.4:574031-574050 | MS.gene024949:intron | 50.0% | |
| GTTTGGTTGCGATTACTGGG+AGG | - | chr5.4:573825-573844 | MS.gene024949:intron | 50.0% | |
| TACAAGCGTTCGTCAATGGC+TGG | - | chr5.4:573310-573329 | MS.gene024949:CDS | 50.0% | |
| TCCAACGATATCTCAGCACC+TGG | + | chr5.4:574028-574047 | None:intergenic | 50.0% | |
| TCCGTTTGAATTCGTTGCGC+TGG | - | chr5.4:573664-573683 | MS.gene024949:intron | 50.0% | |
| TCGTTCAAGAGCTTCAAGCC+AGG | - | chr5.4:573564-573583 | MS.gene024949:intron | 50.0% | |
| TCTTTCTCTTCCGAGAACGG+TGG | + | chr5.4:573453-573472 | None:intergenic | 50.0% | |
| TGAGGAGCTTGAGATGCTCT+TGG | - | chr5.4:574201-574220 | MS.gene024949:intron | 50.0% | |
| TGCTCCTCGTCCTGATAATC+AGG | - | chr5.4:573613-573632 | MS.gene024949:intron | 50.0% | |
| ! | AGTGCCTTCGTTGTTGTTGC+TGG | - | chr5.4:575377-575396 | MS.gene024949:CDS | 50.0% |
| ! | ATTTGGGGTCCCGTTTGGAT+CGG | + | chr5.4:574968-574987 | None:intergenic | 50.0% |
| ! | CGTCAATGGCTGGTTGTTGA+CGG | - | chr5.4:573320-573339 | MS.gene024949:CDS | 50.0% |
| ! | GACTTATTTGGGGTCCCGTT+TGG | + | chr5.4:574973-574992 | None:intergenic | 50.0% |
| ! | GTACCGGCAATTCGGAAGAA+AGG | - | chr5.4:573287-573306 | MS.gene024949:CDS | 50.0% |
| ! | GTTCAAGGGCCCTTTTGGAT+TGG | - | chr5.4:574604-574623 | MS.gene024949:CDS | 50.0% |
| ! | TTTATGTGGACTGTTGGCGG+CGG | - | chr5.4:575461-575480 | MS.gene024949:CDS | 50.0% |
| !! | ACCAGGTGCTGAGATATCGT+TGG | - | chr5.4:574024-574043 | MS.gene024949:intron | 50.0% |
| !! | ACCATAAAGTGCTGTCCGCT+CGG | + | chr5.4:574753-574772 | None:intergenic | 50.0% |
| ACCGAGCGGACAGCACTTTA+TGG | - | chr5.4:574749-574768 | MS.gene024949:CDS | 55.0% | |
| ACTTACCACCAGAGTTGCCG+TGG | + | chr5.4:575360-575379 | None:intergenic | 55.0% | |
| AGGATTCGAAGGTCACGTGC+AGG | + | chr5.4:573407-573426 | None:intergenic | 55.0% | |
| CAAGCGTTTGTGCTTGCACC+AGG | + | chr5.4:575525-575544 | None:intergenic | 55.0% | |
| CATGTTGACCACGGCAACTC+TGG | - | chr5.4:575349-575368 | MS.gene024949:CDS | 55.0% | |
| CTCGATTACCTGTGCTTCGC+CGG | + | chr5.4:573348-573367 | None:intergenic | 55.0% | |
| CTCTTCCGAGAACGGTGGAA+GGG | + | chr5.4:573448-573467 | None:intergenic | 55.0% | |
| GAAGCACAGGTAATCGAGGC+CGG | - | chr5.4:573350-573369 | MS.gene024949:CDS | 55.0% | |
| GGAGAGTGAAGCAAAGACGC+TGG | - | chr5.4:573718-573737 | MS.gene024949:intron | 55.0% | |
| GGATTCGAAGGTCACGTGCA+GGG | + | chr5.4:573406-573425 | None:intergenic | 55.0% | |
| GTGCAAGCACAAACGCTTGC+TGG | - | chr5.4:575526-575545 | MS.gene024949:CDS | 55.0% | |
| TAACGCCAACGATGACCGGT+GGG | - | chr5.4:573247-573266 | MS.gene024949:CDS | 55.0% | |
| TAGTGCTTGCACGTGTTCCG+CGG | + | chr5.4:574150-574169 | None:intergenic | 55.0% | |
| TCCTACCCTTCCACCGTTCT+CGG | - | chr5.4:573440-573459 | MS.gene024949:CDS | 55.0% | |
| TCTCTTCCGAGAACGGTGGA+AGG | + | chr5.4:573449-573468 | None:intergenic | 55.0% | |
| TGCACGTGACCTTCGAATCC+TGG | - | chr5.4:573406-573425 | MS.gene024949:CDS | 55.0% | |
| TGGAAGGGTAGGAGAGGAGA+GGG | + | chr5.4:573433-573452 | None:intergenic | 55.0% | |
| ! | ACGCATGATGGCGTGCTTTC+CGG | + | chr5.4:573372-573391 | None:intergenic | 55.0% |
| ! | TCGTTGGAAGCGGGTTTAGG+AGG | - | chr5.4:574040-574059 | MS.gene024949:intron | 55.0% |
| ! | TTGGAAGCGGGTTTAGGAGG+AGG | - | chr5.4:574043-574062 | MS.gene024949:intron | 55.0% |
| AACGCCAACGATGACCGGTG+GGG | - | chr5.4:573248-573267 | MS.gene024949:CDS | 60.0% | |
| AGTGCTGTCCGCTCGGTAGT+CGG | + | chr5.4:574746-574765 | None:intergenic | 60.0% | |
| CACGCCATCATGCGTCGTAC+CGG | - | chr5.4:573377-573396 | MS.gene024949:CDS | 60.0% | |
| CCGGTAACGCCAACGATGAC+CGG | - | chr5.4:573243-573262 | MS.gene024949:CDS | 60.0% | |
| CCGGTCATCGTTGGCGTTAC+CGG | + | chr5.4:573246-573265 | None:intergenic | 60.0% | |
| CGGCGAAGCACAGGTAATCG+AGG | - | chr5.4:573346-573365 | MS.gene024949:CDS | 60.0% | |
| CTTCCGAATTGCCGGTACGG+CGG | + | chr5.4:573285-573304 | None:intergenic | 60.0% | |
| GAACGGTGGAAGGGTAGGAG+AGG | + | chr5.4:573439-573458 | None:intergenic | 60.0% | |
| GGAGAGGGTCCAGGATTCGA+AGG | + | chr5.4:573418-573437 | None:intergenic | 60.0% | |
| GGGTTTAGGAGGAGGAGGAG+AGG | - | chr5.4:574051-574070 | MS.gene024949:intron | 60.0% | |
| GTAACGCCAACGATGACCGG+TGG | - | chr5.4:573246-573265 | MS.gene024949:CDS | 60.0% | |
| GTGGAAGGGTAGGAGAGGAG+AGG | + | chr5.4:573434-573453 | None:intergenic | 60.0% | |
| GTTGACCACGGCAACTCTGG+TGG | - | chr5.4:575352-575371 | MS.gene024949:CDS | 60.0% | |
| TCCGAGAACGGTGGAAGGGT+AGG | + | chr5.4:573444-573463 | None:intergenic | 60.0% | |
| TGTTCCCCACCGGTCATCGT+TGG | + | chr5.4:573255-573274 | None:intergenic | 60.0% | |
| TTCGAAGGTCACGTGCAGGG+AGG | + | chr5.4:573403-573422 | None:intergenic | 60.0% | |
| ! | GAAGCGGGTTTAGGAGGAGG+AGG | - | chr5.4:574046-574065 | MS.gene024949:intron | 60.0% |
| ! | TGGCTGGTTGTTGACGGCAC+CGG | - | chr5.4:573326-573345 | MS.gene024949:CDS | 60.0% |
| !! | GACGAGTACCGACTACCGAG+CGG | - | chr5.4:574735-574754 | MS.gene024949:CDS | 60.0% |
| AAGGTCACGTGCAGGGAGGC+CGG | + | chr5.4:573399-573418 | None:intergenic | 65.0% | |
| GAGGCCGGTACGACGCATGA+TGG | + | chr5.4:573384-573403 | None:intergenic | 65.0% | |
| GGTAGGAGAGGAGAGGGTCC+AGG | + | chr5.4:573427-573446 | None:intergenic | 65.0% | |
| AATTGCCGGTACGGCGGCGG+CGG | + | chr5.4:573279-573298 | None:intergenic | 70.0% | |
| ACTGTTGGCGGCGGCACTGC+TGG | - | chr5.4:575470-575489 | MS.gene024949:CDS | 70.0% | |
| CCGAATTGCCGGTACGGCGG+CGG | + | chr5.4:573282-573301 | None:intergenic | 70.0% | |
| CTGTTGGCGGCGGCACTGCT+GGG | - | chr5.4:575471-575490 | MS.gene024949:CDS | 70.0% | |
| ! | CCGCCGCCGTACCGGCAATT+CGG | - | chr5.4:573279-573298 | MS.gene024949:CDS | 70.0% |
| !! | TGACGGCACCGGCGAAGCAC+AGG | - | chr5.4:573337-573356 | MS.gene024949:CDS | 70.0% |
| AACAGCCGCCGCCGCCGTAC+CGG | - | chr5.4:573271-573290 | MS.gene024949:CDS | 75.0% | |
| ! | CGGCGGCGGCTGTTCCCCAC+CGG | + | chr5.4:573265-573284 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 573227 | 575553 | 573227 | ID=MS.gene024949 |
| chr5.4 | mRNA | 573227 | 575553 | 573227 | ID=MS.gene024949.t1;Parent=MS.gene024949 |
| chr5.4 | exon | 574510 | 575553 | 574510 | ID=MS.gene024949.t1.exon1;Parent=MS.gene024949.t1 |
| chr5.4 | CDS | 574510 | 575553 | 574510 | ID=cds.MS.gene024949.t1;Parent=MS.gene024949.t1 |
| chr5.4 | exon | 573227 | 573514 | 573227 | ID=MS.gene024949.t1.exon2;Parent=MS.gene024949.t1 |
| chr5.4 | CDS | 573227 | 573514 | 573227 | ID=cds.MS.gene024949.t1;Parent=MS.gene024949.t1 |
| Gene Sequence |
| Protein sequence |
