Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72257.t1 | XP_024631267.1 | 97.2 | 464 | 13 | 0 | 1 | 464 | 1 | 464 | 7.60E-241 | 842.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72257.t1 | Q8S9J0 | 69.6 | 461 | 128 | 4 | 5 | 464 | 9 | 458 | 1.6e-170 | 600.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72257.t1 | A0A396JMY1 | 97.2 | 464 | 13 | 0 | 1 | 464 | 1 | 464 | 5.5e-241 | 842.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene72257 | 0.80686 | 6.70E-50 | -1.69E-46 |
| MS.gene049396 | MS.gene72257 | 0.821 | 5.09E-53 | -1.69E-46 |
| MS.gene049552 | MS.gene72257 | 0.825551 | 4.41E-54 | -1.69E-46 |
| MS.gene049656 | MS.gene72257 | 0.801832 | 7.47E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene72257 | -0.809581 | 1.76E-50 | -1.69E-46 |
| MS.gene050499 | MS.gene72257 | 0.805598 | 1.24E-49 | -1.69E-46 |
| MS.gene050502 | MS.gene72257 | 0.834117 | 3.61E-56 | -1.69E-46 |
| MS.gene050747 | MS.gene72257 | 0.814239 | 1.70E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene72257 | 0.816526 | 5.28E-52 | -1.69E-46 |
| MS.gene050871 | MS.gene72257 | 0.821101 | 4.83E-53 | -1.69E-46 |
| MS.gene051509 | MS.gene72257 | 0.800926 | 1.15E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene72257 | 0.817085 | 3.96E-52 | -1.69E-46 |
| MS.gene052503 | MS.gene72257 | 0.811276 | 7.59E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene72257 | 0.814801 | 1.28E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene72257 | 0.810018 | 1.42E-50 | -1.69E-46 |
| MS.gene053018 | MS.gene72257 | 0.802364 | 5.81E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene72257 | 0.80817 | 3.53E-50 | -1.69E-46 |
| MS.gene053318 | MS.gene72257 | 0.825783 | 3.88E-54 | -1.69E-46 |
| MS.gene053436 | MS.gene72257 | 0.840135 | 1.04E-57 | -1.69E-46 |
| MS.gene053505 | MS.gene72257 | 0.829261 | 5.68E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene72257 | 0.826219 | 3.06E-54 | -1.69E-46 |
| MS.gene053626 | MS.gene72257 | 0.877242 | 7.36E-69 | -1.69E-46 |
| MS.gene054003 | MS.gene72257 | 0.860948 | 1.45E-63 | -1.69E-46 |
| MS.gene054486 | MS.gene72257 | 0.828859 | 7.11E-55 | -1.69E-46 |
| MS.gene054595 | MS.gene72257 | 0.834703 | 2.57E-56 | -1.69E-46 |
| MS.gene055486 | MS.gene72257 | 0.812262 | 4.63E-51 | -1.69E-46 |
| MS.gene055519 | MS.gene72257 | 0.824109 | 9.65E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene72257 | 0.851775 | 7.13E-61 | -1.69E-46 |
| MS.gene055911 | MS.gene72257 | 0.852284 | 5.11E-61 | -1.69E-46 |
| MS.gene05601 | MS.gene72257 | 0.842321 | 2.78E-58 | -1.69E-46 |
| MS.gene056040 | MS.gene72257 | 0.819355 | 1.21E-52 | -1.69E-46 |
| MS.gene056166 | MS.gene72257 | 0.848447 | 6.09E-60 | -1.69E-46 |
| MS.gene056310 | MS.gene72257 | -0.804701 | 1.90E-49 | -1.69E-46 |
| MS.gene056313 | MS.gene72257 | -0.805165 | 1.52E-49 | -1.69E-46 |
| MS.gene056346 | MS.gene72257 | 0.835645 | 1.49E-56 | -1.69E-46 |
| MS.gene056422 | MS.gene72257 | 0.810211 | 1.29E-50 | -1.69E-46 |
| MS.gene056448 | MS.gene72257 | 0.846281 | 2.40E-59 | -1.69E-46 |
| MS.gene056878 | MS.gene72257 | 0.815015 | 1.15E-51 | -1.69E-46 |
| MS.gene057086 | MS.gene72257 | 0.841547 | 4.45E-58 | -1.69E-46 |
| MS.gene057506 | MS.gene72257 | -0.802456 | 5.56E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene72257 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene05787 | MS.gene72257 | 0.823194 | 1.58E-53 | -1.69E-46 |
| MS.gene058157 | MS.gene72257 | 0.836905 | 7.12E-57 | -1.69E-46 |
| MS.gene058183 | MS.gene72257 | 0.810982 | 8.79E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene72257 | 0.834309 | 3.23E-56 | -1.69E-46 |
| MS.gene058726 | MS.gene72257 | -0.817338 | 3.47E-52 | -1.69E-46 |
| MS.gene059367 | MS.gene72257 | 0.859729 | 3.38E-63 | -1.69E-46 |
| MS.gene059368 | MS.gene72257 | 0.852304 | 5.04E-61 | -1.69E-46 |
| MS.gene059517 | MS.gene72257 | 0.832164 | 1.11E-55 | -1.69E-46 |
| MS.gene059680 | MS.gene72257 | 0.807244 | 5.56E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene72257 | 0.878714 | 2.25E-69 | -1.69E-46 |
| MS.gene060778 | MS.gene72257 | 0.832928 | 7.15E-56 | -1.69E-46 |
| MS.gene060837 | MS.gene72257 | 0.827628 | 1.41E-54 | -1.69E-46 |
| MS.gene06097 | MS.gene72257 | 0.81349 | 2.49E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72257.t1 | MTR_1g061710 | 96.379 | 359 | 13 | 0 | 1 | 359 | 1 | 359 | 0.0 | 703 |
| MS.gene72257.t1 | MTR_1g061710 | 100.000 | 104 | 0 | 0 | 361 | 464 | 427 | 530 | 9.76e-60 | 204 |
| MS.gene72257.t1 | MTR_7g103300 | 74.194 | 465 | 115 | 3 | 1 | 464 | 1 | 461 | 0.0 | 621 |
| MS.gene72257.t1 | MTR_7g103300 | 72.907 | 454 | 113 | 4 | 1 | 453 | 1 | 445 | 0.0 | 582 |
| MS.gene72257.t1 | MTR_7g103300 | 77.506 | 409 | 88 | 2 | 57 | 464 | 8 | 413 | 0.0 | 577 |
| MS.gene72257.t1 | MTR_7g103300 | 77.540 | 374 | 80 | 2 | 92 | 464 | 1 | 371 | 0.0 | 548 |
| MS.gene72257.t1 | MTR_7g103300 | 72.222 | 396 | 105 | 3 | 1 | 395 | 1 | 392 | 1.14e-178 | 506 |
| MS.gene72257.t1 | MTR_7g103300 | 71.547 | 362 | 98 | 3 | 1 | 361 | 1 | 358 | 8.91e-158 | 451 |
| MS.gene72257.t1 | MTR_3g109950 | 51.147 | 436 | 198 | 6 | 31 | 463 | 44 | 467 | 1.71e-130 | 386 |
| MS.gene72257.t1 | MTR_8g077830 | 48.276 | 435 | 216 | 3 | 29 | 462 | 39 | 465 | 8.28e-123 | 366 |
| MS.gene72257.t1 | MTR_3g109950 | 51.699 | 412 | 184 | 6 | 31 | 439 | 44 | 443 | 3.59e-122 | 364 |
| MS.gene72257.t1 | MTR_5g019950 | 51.566 | 415 | 189 | 3 | 49 | 463 | 67 | 469 | 5.12e-116 | 349 |
| MS.gene72257.t1 | MTR_3g109950 | 51.648 | 364 | 161 | 6 | 31 | 391 | 44 | 395 | 7.02e-104 | 316 |
| MS.gene72257.t1 | MTR_8g088080 | 47.596 | 416 | 201 | 3 | 55 | 463 | 69 | 474 | 1.31e-103 | 317 |
| MS.gene72257.t1 | MTR_1g026910 | 43.839 | 422 | 219 | 5 | 49 | 462 | 44 | 455 | 1.13e-102 | 314 |
| MS.gene72257.t1 | MTR_8g088070 | 46.860 | 414 | 207 | 5 | 55 | 463 | 64 | 469 | 1.14e-99 | 307 |
| MS.gene72257.t1 | MTR_1g026910 | 43.609 | 399 | 207 | 5 | 49 | 439 | 44 | 432 | 6.47e-94 | 291 |
| MS.gene72257.t1 | MTR_2g010740 | 31.294 | 425 | 252 | 10 | 57 | 458 | 55 | 462 | 6.95e-40 | 149 |
| MS.gene72257.t1 | MTR_5g019970 | 56.731 | 104 | 45 | 0 | 360 | 463 | 6 | 109 | 8.88e-29 | 109 |
| MS.gene72257.t1 | MTR_2g010740 | 30.746 | 335 | 192 | 10 | 57 | 368 | 55 | 372 | 2.06e-26 | 110 |
| MS.gene72257.t1 | MTR_3g110012 | 51.163 | 86 | 20 | 1 | 330 | 393 | 60 | 145 | 4.21e-11 | 61.6 |
| MS.gene72257.t1 | MTR_3g109980 | 51.163 | 86 | 20 | 1 | 330 | 393 | 60 | 145 | 4.21e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72257.t1 | AT2G36630 | 70.282 | 461 | 125 | 4 | 5 | 464 | 9 | 458 | 0.0 | 583 |
| MS.gene72257.t1 | AT2G25737 | 52.844 | 422 | 177 | 5 | 50 | 463 | 66 | 473 | 6.43e-130 | 385 |
| MS.gene72257.t1 | AT2G25737 | 51.875 | 320 | 132 | 5 | 50 | 361 | 66 | 371 | 1.01e-86 | 270 |
| MS.gene72257.t1 | AT1G11540 | 27.876 | 452 | 301 | 7 | 18 | 458 | 9 | 446 | 7.48e-37 | 141 |
| MS.gene72257.t1 | AT1G11540 | 27.851 | 377 | 247 | 7 | 93 | 458 | 1 | 363 | 2.98e-35 | 135 |
| MS.gene72257.t1 | AT4G21250 | 30.645 | 434 | 247 | 8 | 26 | 442 | 33 | 429 | 1.01e-33 | 132 |
| MS.gene72257.t1 | AT1G61740 | 26.549 | 452 | 290 | 11 | 30 | 458 | 22 | 454 | 3.91e-33 | 130 |
| MS.gene72257.t1 | AT4G21260 | 27.400 | 427 | 235 | 11 | 24 | 442 | 14 | 373 | 5.37e-25 | 106 |
Find 93 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGGAGGTGGATTTATTT+TGG | 0.132041 | 1.4:-50916533 | MS.gene72257:CDS |
| CCTATGCTTAATCTTCTTCT+TGG | 0.184547 | 1.4:-50918353 | MS.gene72257:CDS |
| CCATGAGTTCATGGGATTCT+TGG | 0.257074 | 1.4:-50915493 | MS.gene72257:CDS |
| GCTACTTTGGTTAATTCTAA+TGG | 0.257433 | 1.4:-50917412 | MS.gene72257:CDS |
| GTTCTGGAACAGATAGAATT+TGG | 0.259719 | 1.4:-50918577 | MS.gene72257:CDS |
| ATGCCTCACATATGTATTCT+AGG | 0.262467 | 1.4:+50916635 | None:intergenic |
| TTACCTTGATGATTTGAATA+AGG | 0.268202 | 1.4:+50917068 | None:intergenic |
| GTTGGAGGCTTACTTGGTTC+TGG | 0.271593 | 1.4:-50916550 | MS.gene72257:CDS |
| TTCTCTGTTTCAACCTTAGA+TGG | 0.285945 | 1.4:-50917132 | MS.gene72257:CDS |
| AGAAAATTAGTTGCATTTCT+TGG | 0.286067 | 1.4:-50915711 | MS.gene72257:CDS |
| TTGGGTGCTCTTCGGCTTGC+AGG | 0.288226 | 1.4:-50916929 | MS.gene72257:intron |
| AGAAAGAGCAGCAGCAGATT+TGG | 0.288931 | 1.4:+50918322 | None:intergenic |
| AACTCTAACCGTTATGGTTC+TGG | 0.290533 | 1.4:-50918593 | MS.gene72257:CDS |
| CTAAAATCCTCTTCCATCTA+AGG | 0.311247 | 1.4:+50917119 | None:intergenic |
| GGGCCTCTTCTCCTTGAGAT+AGG | 0.312567 | 1.4:-50916511 | MS.gene72257:CDS |
| AGGACAGTGATAAGCCAAAA+AGG | 0.314523 | 1.4:+50917765 | None:intergenic |
| CCTCATCACAGTGTCTGTTT+TGG | 0.316799 | 1.4:-50915760 | MS.gene72257:CDS |
| ATTTAGTTGGAAACTTGTTT+TGG | 0.323990 | 1.4:-50918447 | MS.gene72257:CDS |
| CATGAGTTCATGGGATTCTT+GGG | 0.327579 | 1.4:-50915492 | MS.gene72257:CDS |
| CTCATTATCATTCTCTTCAT+AGG | 0.331159 | 1.4:-50917744 | MS.gene72257:intron |
| GCCAAATCATAGTCTAATAT+TGG | 0.339930 | 1.4:+50917852 | None:intergenic |
| GCCAATATTAGACTATGATT+TGG | 0.343903 | 1.4:-50917853 | MS.gene72257:CDS |
| GGCTTACTTGGTTCTGGAGG+TGG | 0.346407 | 1.4:-50916544 | MS.gene72257:CDS |
| TGCAGGAATTGGAATTTAGT+TGG | 0.363273 | 1.4:-50918460 | MS.gene72257:intron |
| GGAATTGTTGGAGGCTTACT+TGG | 0.374041 | 1.4:-50916556 | MS.gene72257:CDS |
| TTTGTGCAGGAACTTCTTTA+AGG | 0.376797 | 1.4:-50917630 | MS.gene72257:intron |
| GAAAATTAGTTGCATTTCTT+GGG | 0.377774 | 1.4:-50915710 | MS.gene72257:CDS |
| AAGAGGTTCCCTATGCCTTA+TGG | 0.397338 | 1.4:-50915899 | MS.gene72257:intron |
| AACTGCTAAGCAAGCTACTT+TGG | 0.413957 | 1.4:-50917425 | MS.gene72257:CDS |
| AGGCCTGCAGTGTATGGTAT+TGG | 0.427218 | 1.4:-50916948 | MS.gene72257:CDS |
| TAAAGAAAAGAAGTCAACTA+TGG | 0.432207 | 1.4:-50917241 | MS.gene72257:intron |
| GTCATTGTATTCATCCTCTC+TGG | 0.433319 | 1.4:-50915678 | MS.gene72257:CDS |
| GATACACAACCATGAGTTCA+TGG | 0.435806 | 1.4:-50915502 | MS.gene72257:CDS |
| TGTGCAATGAGTGGTATTGT+AGG | 0.441307 | 1.4:-50916580 | MS.gene72257:CDS |
| GTATGGTATTGGGTGCTCTT+CGG | 0.446576 | 1.4:-50916937 | MS.gene72257:CDS |
| ACCGTTGGTGGTGTTGGTGG+TGG | 0.448909 | 1.4:-50918389 | MS.gene72257:CDS |
| GTTGGTGGTGTTGGTGGTGG+TGG | 0.454327 | 1.4:-50918386 | MS.gene72257:CDS |
| TCATCAAACTCTAACCGTTA+TGG | 0.454959 | 1.4:-50918599 | MS.gene72257:CDS |
| GGGCATCAGCATCATCAGTT+TGG | 0.457173 | 1.4:-50917911 | MS.gene72257:CDS |
| CCTCCTTATTCAAATCATCA+AGG | 0.464837 | 1.4:-50917071 | MS.gene72257:intron |
| GTTTCAACCTTAGATGGAAG+AGG | 0.471805 | 1.4:-50917126 | MS.gene72257:CDS |
| CGCAGAGAGAGTAGCAAGAC+AGG | 0.482761 | 1.4:+50918673 | None:intergenic |
| CACAGAATGAGGATGGGCAC+AGG | 0.484366 | 1.4:-50916661 | MS.gene72257:CDS |
| GGCCTGCAGTGTATGGTATT+GGG | 0.487342 | 1.4:-50916947 | MS.gene72257:CDS |
| GGTATTGTAGGTGGAATTGT+TGG | 0.495520 | 1.4:-50916568 | MS.gene72257:CDS |
| TTTCAGCCAATGCTTATGCT+AGG | 0.504558 | 1.4:-50917822 | MS.gene72257:CDS |
| TTTGCCAGTGCTCTCACCAT+GGG | 0.516548 | 1.4:-50915648 | MS.gene72257:intron |
| ATTGTAGGTGGAATTGTTGG+AGG | 0.521718 | 1.4:-50916565 | MS.gene72257:CDS |
| TGTGGAACCGTTGGTGGTGT+TGG | 0.524570 | 1.4:-50918395 | MS.gene72257:CDS |
| TCTTTAAGGTCATTCTTCAA+AGG | 0.527965 | 1.4:-50917616 | MS.gene72257:CDS |
| CACTCATTGCACAAAATGCA+AGG | 0.529460 | 1.4:+50916590 | None:intergenic |
| TCAAAGGAATTGAAATGTGG+AGG | 0.529502 | 1.4:-50917600 | MS.gene72257:CDS |
| CAAAGATCACAGAATGAGGA+TGG | 0.531696 | 1.4:-50916668 | MS.gene72257:CDS |
| TATGTGAGGCATCAATAGAA+TGG | 0.532905 | 1.4:-50916624 | MS.gene72257:CDS |
| ATGTAGAGGCCTGCAGTGTA+TGG | 0.533143 | 1.4:-50916954 | MS.gene72257:CDS |
| TGAGATAGGTGTCATCCCTC+AGG | 0.534173 | 1.4:-50916497 | MS.gene72257:intron |
| TCTAATGGAGAATTTAAAGC+AGG | 0.535837 | 1.4:-50917397 | MS.gene72257:intron |
| CCTTGATGATTTGAATAAGG+AGG | 0.539252 | 1.4:+50917071 | None:intergenic |
| GGAACCGTTGGTGGTGTTGG+TGG | 0.539356 | 1.4:-50918392 | MS.gene72257:CDS |
| TTGAATTCTACATTCTCAAG+AGG | 0.545752 | 1.4:-50915916 | MS.gene72257:CDS |
| TGAAGATTACCATAAGGCAT+AGG | 0.546602 | 1.4:+50915890 | None:intergenic |
| ACCACCACCAACACCACCAA+CGG | 0.547510 | 1.4:+50918388 | None:intergenic |
| CCAAGAATCCCATGAACTCA+TGG | 0.548829 | 1.4:+50915493 | None:intergenic |
| ATTACCCATGGTGAGAGCAC+TGG | 0.549613 | 1.4:+50915644 | None:intergenic |
| GGAGGCTTACTTGGTTCTGG+AGG | 0.552125 | 1.4:-50916547 | MS.gene72257:CDS |
| TATCTGTTCCAGAACCATAA+CGG | 0.554023 | 1.4:+50918585 | None:intergenic |
| AATTAGTTGCATTTCTTGGG+AGG | 0.558277 | 1.4:-50915707 | MS.gene72257:CDS |
| GAAGATTACCATAAGGCATA+GGG | 0.560541 | 1.4:+50915891 | None:intergenic |
| ATTAGTTGCATTTCTTGGGA+GGG | 0.561323 | 1.4:-50915706 | MS.gene72257:CDS |
| GGATCAGCATGTGGAACCGT+TGG | 0.569477 | 1.4:-50918404 | MS.gene72257:CDS |
| CAAAGGAATTGAAATGTGGA+GGG | 0.569796 | 1.4:-50917599 | MS.gene72257:CDS |
| GTAATTCCTAGCATAAGCAT+TGG | 0.571681 | 1.4:+50917816 | None:intergenic |
| CTATGAAGAGAATGATAATG+AGG | 0.579843 | 1.4:+50917745 | None:intergenic |
| TGTACAAAGATCACAGAATG+AGG | 0.585072 | 1.4:-50916672 | MS.gene72257:CDS |
| GTTTGATGATGATGATAACA+AGG | 0.587310 | 1.4:+50918613 | None:intergenic |
| TCAGCATGTGGAACCGTTGG+TGG | 0.590204 | 1.4:-50918401 | MS.gene72257:CDS |
| TGGTTTGCAGACTGATGTAG+AGG | 0.594763 | 1.4:-50916968 | MS.gene72257:intron |
| GATGATAACAAGGAGAATGA+TGG | 0.600061 | 1.4:+50918623 | None:intergenic |
| TCTTCAAAGGAATTGAAATG+TGG | 0.607269 | 1.4:-50917603 | MS.gene72257:CDS |
| GAGGGTTGAGACTCTTCTCA+AGG | 0.609115 | 1.4:-50917581 | MS.gene72257:intron |
| ACACCTATCTCAAGGAGAAG+AGG | 0.611353 | 1.4:+50916508 | None:intergenic |
| CCAAGAAGAAGATTAAGCAT+AGG | 0.611625 | 1.4:+50918353 | None:intergenic |
| ATACACAACCATGAGTTCAT+GGG | 0.614070 | 1.4:-50915501 | MS.gene72257:CDS |
| CACCCAATACCATACACTGC+AGG | 0.618863 | 1.4:+50916945 | None:intergenic |
| ACAGAATGAGGATGGGCACA+GGG | 0.625351 | 1.4:-50916660 | MS.gene72257:CDS |
| AGTTTGGTATAATTTGAGAG+TGG | 0.626700 | 1.4:-50917895 | MS.gene72257:CDS |
| GAGGGATGACACCTATCTCA+AGG | 0.628407 | 1.4:+50916500 | None:intergenic |
| ACTCATTGCACAAAATGCAA+GGG | 0.642562 | 1.4:+50916591 | None:intergenic |
| CTTATGCTAGGAATTACTGT+TGG | 0.643330 | 1.4:-50917810 | MS.gene72257:CDS |
| AAAGATCACAGAATGAGGAT+GGG | 0.663631 | 1.4:-50916667 | MS.gene72257:CDS |
| GCAATGAGTGGTATTGTAGG+TGG | 0.666887 | 1.4:-50916577 | MS.gene72257:CDS |
| CCAAAACAGACACTGTGATG+AGG | 0.668862 | 1.4:+50915760 | None:intergenic |
| GAGCCTAGAATACATATGTG+AGG | 0.685813 | 1.4:-50916638 | MS.gene72257:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATGTTTATGTTTATA+TGG | - | chr1.4:50915695-50915714 | MS.gene72257:CDS | 10.0% |
| !! | AAAACAAAAATTAGAGAAAA+AGG | + | chr1.4:50916734-50916753 | None:intergenic | 15.0% |
| !! | TAAAATAAACAGTTTATTGT+TGG | - | chr1.4:50917207-50917226 | MS.gene72257:intron | 15.0% |
| !!! | AATCATTAATTCAAGTTTTT+AGG | - | chr1.4:50916693-50916712 | MS.gene72257:CDS | 15.0% |
| !!! | ATGTTATACATTTTTATTTC+AGG | - | chr1.4:50918640-50918659 | MS.gene72257:CDS | 15.0% |
| !!! | ATTTATAGAGTTTTAAGAAA+AGG | + | chr1.4:50917418-50917437 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTATTTTTGTGC+AGG | - | chr1.4:50916552-50916571 | MS.gene72257:CDS | 15.0% |
| !!! | TTTTTTTAATGTGTTATTGA+AGG | - | chr1.4:50915664-50915683 | MS.gene72257:CDS | 15.0% |
| !! | AAAGAGTAAGAAAAATTTAC+AGG | + | chr1.4:50915644-50915663 | None:intergenic | 20.0% |
| !! | AAATAAATTCATAAGGCATA+GGG | + | chr1.4:50918400-50918419 | None:intergenic | 20.0% |
| !! | ATTATTGTTGTGTAGAAAAA+TGG | + | chr1.4:50916534-50916553 | None:intergenic | 20.0% |
| !! | TGCAAACAAATAAATTCATA+AGG | + | chr1.4:50918407-50918426 | None:intergenic | 20.0% |
| !! | TGGATATATATGCTTATAAT+AGG | - | chr1.4:50916665-50916684 | MS.gene72257:CDS | 20.0% |
| !!! | ATAAACTATGAAGTTTTTTG+TGG | + | chr1.4:50915489-50915508 | None:intergenic | 20.0% |
| !!! | ATTTTTATTTCAGGTATTGT+TGG | - | chr1.4:50918649-50918668 | MS.gene72257:CDS | 20.0% |
| !!! | TATTATTGATTGAATTGTTG+CGG | - | chr1.4:50916237-50916256 | MS.gene72257:intron | 20.0% |
| ! | AAAACTCTATAAATGCAATG+TGG | - | chr1.4:50917424-50917443 | MS.gene72257:CDS | 25.0% |
| ! | ACTGCAATTCATAATATGTT+TGG | + | chr1.4:50917313-50917332 | None:intergenic | 25.0% |
| ! | AGAAAATTAGTTGCATTTCT+TGG | - | chr1.4:50918484-50918503 | MS.gene72257:intron | 25.0% |
| ! | ATGCTGATAATTTAAATTGC+AGG | - | chr1.4:50918202-50918221 | MS.gene72257:intron | 25.0% |
| ! | ATTTCTCAAAAACATCACAA+TGG | + | chr1.4:50916216-50916235 | None:intergenic | 25.0% |
| ! | CAAATAAATTCATAAGGCAT+AGG | + | chr1.4:50918401-50918420 | None:intergenic | 25.0% |
| ! | CAATTGACAATTGAAAATTC+TGG | + | chr1.4:50917974-50917993 | None:intergenic | 25.0% |
| ! | GAAAATTAGTTGCATTTCTT+GGG | - | chr1.4:50918485-50918504 | MS.gene72257:intron | 25.0% |
| ! | TAAAGAAAAGAAGTCAACTA+TGG | - | chr1.4:50916954-50916973 | MS.gene72257:CDS | 25.0% |
| ! | TATACAAATTTCCACAATAG+TGG | - | chr1.4:50916821-50916840 | MS.gene72257:intron | 25.0% |
| ! | TCATATAAATCAGCAAATTG+AGG | + | chr1.4:50918589-50918608 | None:intergenic | 25.0% |
| !! | GGATCCATTTTCAATTTAAT+TGG | - | chr1.4:50918349-50918368 | MS.gene72257:CDS | 25.0% |
| !! | TTACCTTGATGATTTGAATA+AGG | + | chr1.4:50917130-50917149 | None:intergenic | 25.0% |
| !!! | ATAGTTGACTTCTTTTCTTT+AGG | + | chr1.4:50916955-50916974 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTAGGTATGATAA+TGG | - | chr1.4:50916261-50916280 | MS.gene72257:intron | 25.0% |
| !!! | ATTTAGTTGGAAACTTGTTT+TGG | - | chr1.4:50915748-50915767 | MS.gene72257:CDS | 25.0% |
| !!! | TAGTTGACTTCTTTTCTTTA+GGG | + | chr1.4:50916954-50916973 | None:intergenic | 25.0% |
| !!! | TTGGTTTTAGGTATGATAAT+GGG | - | chr1.4:50916262-50916281 | MS.gene72257:intron | 25.0% |
| AGAATAAACTTAGATACCAC+CGG | + | chr1.4:50916187-50916206 | None:intergenic | 30.0% | |
| AGATAAGATAACCACTATTG+TGG | + | chr1.4:50916835-50916854 | None:intergenic | 30.0% | |
| AGTTTGGTATAATTTGAGAG+TGG | - | chr1.4:50916300-50916319 | MS.gene72257:intron | 30.0% | |
| ATAAATCAGCAAATTGAGGT+AGG | + | chr1.4:50918585-50918604 | None:intergenic | 30.0% | |
| CCAGTACAATATTATAACAC+TGG | - | chr1.4:50918372-50918391 | MS.gene72257:CDS | 30.0% | |
| CCAGTGTTATAATATTGTAC+TGG | + | chr1.4:50918375-50918394 | None:intergenic | 30.0% | |
| CTCATTATCATTCTCTTCAT+AGG | - | chr1.4:50916451-50916470 | MS.gene72257:intron | 30.0% | |
| CTGGCCAATTAAATTGAAAA+TGG | + | chr1.4:50918356-50918375 | None:intergenic | 30.0% | |
| GCCAAATCATAGTCTAATAT+TGG | + | chr1.4:50916346-50916365 | None:intergenic | 30.0% | |
| GCCAATATTAGACTATGATT+TGG | - | chr1.4:50916342-50916361 | MS.gene72257:intron | 30.0% | |
| GGTAAGCAAAATTGAAAAGA+GGG | + | chr1.4:50917737-50917756 | None:intergenic | 30.0% | |
| TAATCAGTAGGAATCAAACT+CGG | - | chr1.4:50916055-50916074 | MS.gene72257:intron | 30.0% | |
| TATCAGTGAGTCTAATAAGT+AGG | - | chr1.4:50915985-50916004 | MS.gene72257:intron | 30.0% | |
| TCTGGTCAACACAATTAAAA+GGG | + | chr1.4:50917956-50917975 | None:intergenic | 30.0% | |
| TCTTCAAAGGAATTGAAATG+TGG | - | chr1.4:50916592-50916611 | MS.gene72257:CDS | 30.0% | |
| TGGTAAGCAAAATTGAAAAG+AGG | + | chr1.4:50917738-50917757 | None:intergenic | 30.0% | |
| TGTTTATTATGTGCAGGAAT+TGG | - | chr1.4:50915724-50915743 | MS.gene72257:CDS | 30.0% | |
| TTATCACTAGAAATCGAACT+CGG | - | chr1.4:50915917-50915936 | MS.gene72257:CDS | 30.0% | |
| TTATCATTCTCTTCATAGGT+TGG | - | chr1.4:50916455-50916474 | MS.gene72257:intron | 30.0% | |
| TTCTGGTCAACACAATTAAA+AGG | + | chr1.4:50917957-50917976 | None:intergenic | 30.0% | |
| TTGAATTCTACATTCTCAAG+AGG | - | chr1.4:50918279-50918298 | MS.gene72257:intron | 30.0% | |
| TTGGAAACTGAAACAGAAAA+TGG | + | chr1.4:50917467-50917486 | None:intergenic | 30.0% | |
| TTTGTGTGTTTATTATGTGC+AGG | - | chr1.4:50915718-50915737 | MS.gene72257:CDS | 30.0% | |
| ! | AATATTGGCACTTCTTTTGT+TGG | + | chr1.4:50916331-50916350 | None:intergenic | 30.0% |
| ! | CATCAAAAACCTTGATTTGA+CGG | - | chr1.4:50917373-50917392 | MS.gene72257:intron | 30.0% |
| ! | CTATGAAGAGAATGATAATG+AGG | + | chr1.4:50916453-50916472 | None:intergenic | 30.0% |
| ! | GCTACTTTGGTTAATTCTAA+TGG | - | chr1.4:50916783-50916802 | MS.gene72257:intron | 30.0% |
| ! | TCAGTTTCCAATTGCATTTT+TGG | - | chr1.4:50917476-50917495 | MS.gene72257:intron | 30.0% |
| ! | TCTAATGGAGAATTTAAAGC+AGG | - | chr1.4:50916798-50916817 | MS.gene72257:intron | 30.0% |
| !! | AAACAGAGAATTTGCTGAAA+GGG | + | chr1.4:50917053-50917072 | None:intergenic | 30.0% |
| !! | AGTTGATGAAGATTACCATA+AGG | + | chr1.4:50918314-50918333 | None:intergenic | 30.0% |
| !! | GTTTGATGATGATGATAACA+AGG | + | chr1.4:50915585-50915604 | None:intergenic | 30.0% |
| !! | TCTTTAAGGTCATTCTTCAA+AGG | - | chr1.4:50916579-50916598 | MS.gene72257:CDS | 30.0% |
| !! | TTCTTTTCTTTAGGGATCAA+TGG | + | chr1.4:50916946-50916965 | None:intergenic | 30.0% |
| !!! | AGTTTTTTATTTGTCACCAC+CGG | + | chr1.4:50918170-50918189 | None:intergenic | 30.0% |
| !!! | ATGATGGTTTTTGGTTGTTA+TGG | + | chr1.4:50915559-50915578 | None:intergenic | 30.0% |
| !!! | GCTACAGTTATTGGTTTTTT+TGG | - | chr1.4:50915770-50915789 | MS.gene72257:CDS | 30.0% |
| !!! | TGGTTTTAGGTATGATAATG+GGG | - | chr1.4:50916263-50916282 | MS.gene72257:intron | 30.0% |
| AAAGATCACAGAATGAGGAT+GGG | - | chr1.4:50917528-50917547 | MS.gene72257:intron | 35.0% | |
| AAAGGTTTATGACCACAGTT+TGG | + | chr1.4:50917400-50917419 | None:intergenic | 35.0% | |
| AAATCGAACTCGGTATTTCA+GGG | - | chr1.4:50915927-50915946 | MS.gene72257:CDS | 35.0% | |
| AATTAGTTGCATTTCTTGGG+AGG | - | chr1.4:50918488-50918507 | MS.gene72257:intron | 35.0% | |
| ACTCATTGCACAAAATGCAA+GGG | + | chr1.4:50917607-50917626 | None:intergenic | 35.0% | |
| AGAATTGAACTTCGTACTCT+AGG | - | chr1.4:50916137-50916156 | MS.gene72257:intron | 35.0% | |
| ATACACAACCATGAGTTCAT+GGG | - | chr1.4:50918694-50918713 | MS.gene72257:CDS | 35.0% | |
| ATCACAATGTAGCTATAGTG+TGG | + | chr1.4:50918046-50918065 | None:intergenic | 35.0% | |
| ATGCCTCACATATGTATTCT+AGG | + | chr1.4:50917563-50917582 | None:intergenic | 35.0% | |
| ATTAGTTGCATTTCTTGGGA+GGG | - | chr1.4:50918489-50918508 | MS.gene72257:intron | 35.0% | |
| CAAAGGAATTGAAATGTGGA+GGG | - | chr1.4:50916596-50916615 | MS.gene72257:CDS | 35.0% | |
| CCAAACACCAAAAATGCAAT+TGG | + | chr1.4:50917486-50917505 | None:intergenic | 35.0% | |
| CCAAGAAGAAGATTAAGCAT+AGG | + | chr1.4:50915845-50915864 | None:intergenic | 35.0% | |
| CCTATGCTTAATCTTCTTCT+TGG | - | chr1.4:50915842-50915861 | MS.gene72257:intron | 35.0% | |
| CCTCCTTATTCAAATCATCA+AGG | - | chr1.4:50917124-50917143 | MS.gene72257:CDS | 35.0% | |
| CGATTTAGTGTGTAGTGTAA+TGG | + | chr1.4:50917803-50917822 | None:intergenic | 35.0% | |
| CTAAAATCCTCTTCCATCTA+AGG | + | chr1.4:50917079-50917098 | None:intergenic | 35.0% | |
| CTTATGCTAGGAATTACTGT+TGG | - | chr1.4:50916385-50916404 | MS.gene72257:intron | 35.0% | |
| GAAGATTACCATAAGGCATA+GGG | + | chr1.4:50918307-50918326 | None:intergenic | 35.0% | |
| GAATTGAACTTCGTACTCTA+GGG | - | chr1.4:50916138-50916157 | MS.gene72257:intron | 35.0% | |
| GATGATAACAAGGAGAATGA+TGG | + | chr1.4:50915575-50915594 | None:intergenic | 35.0% | |
| GTAATTCCTAGCATAAGCAT+TGG | + | chr1.4:50916382-50916401 | None:intergenic | 35.0% | |
| TAGAAACATTGATACCATCG+AGG | + | chr1.4:50916114-50916133 | None:intergenic | 35.0% | |
| TAGGTTTCCATTATTACCCA+TGG | + | chr1.4:50918566-50918585 | None:intergenic | 35.0% | |
| TATCTGTTCCAGAACCATAA+CGG | + | chr1.4:50915613-50915632 | None:intergenic | 35.0% | |
| TCAAAGGAATTGAAATGTGG+AGG | - | chr1.4:50916595-50916614 | MS.gene72257:CDS | 35.0% | |
| TCAACTCTTCAAAGCTTAAC+TGG | - | chr1.4:50918328-50918347 | MS.gene72257:CDS | 35.0% | |
| TCATCAAACTCTAACCGTTA+TGG | - | chr1.4:50915596-50915615 | MS.gene72257:intron | 35.0% | |
| TGAAGATTACCATAAGGCAT+AGG | + | chr1.4:50918308-50918327 | None:intergenic | 35.0% | |
| TGATTGAATTGTTGCGGAAT+TGG | - | chr1.4:50916243-50916262 | MS.gene72257:intron | 35.0% | |
| TGCAGGAATTGGAATTTAGT+TGG | - | chr1.4:50915735-50915754 | MS.gene72257:CDS | 35.0% | |
| TGCTTACCAATGTTGTTGAT+CGG | - | chr1.4:50917749-50917768 | MS.gene72257:CDS | 35.0% | |
| TGTACAAAGATCACAGAATG+AGG | - | chr1.4:50917523-50917542 | MS.gene72257:intron | 35.0% | |
| TTCTCTGTTTCAACCTTAGA+TGG | - | chr1.4:50917063-50917082 | MS.gene72257:intron | 35.0% | |
| TTTGTGCAGGAACTTCTTTA+AGG | - | chr1.4:50916565-50916584 | MS.gene72257:CDS | 35.0% | |
| ! | ACAAGGAGAATGATGGTTTT+TGG | + | chr1.4:50915568-50915587 | None:intergenic | 35.0% |
| ! | CCTTGATGATTTGAATAAGG+AGG | + | chr1.4:50917127-50917146 | None:intergenic | 35.0% |
| ! | CGATTCACAATTGATAACAC+TGG | + | chr1.4:50917850-50917869 | None:intergenic | 35.0% |
| ! | GAGTTTGATTCCTACTGATT+AGG | + | chr1.4:50916056-50916075 | None:intergenic | 35.0% |
| ! | TATGTGAGGCATCAATAGAA+TGG | - | chr1.4:50917571-50917590 | MS.gene72257:intron | 35.0% |
| !! | GAAACAGAGAATTTGCTGAA+AGG | + | chr1.4:50917054-50917073 | None:intergenic | 35.0% |
| !! | GAAGAGGATTTTAGTGCTTT+TGG | - | chr1.4:50917085-50917104 | MS.gene72257:CDS | 35.0% |
| !! | GTTCTGGAACAGATAGAATT+TGG | - | chr1.4:50915618-50915637 | MS.gene72257:intron | 35.0% |
| !! | TCTGGAGGTGGATTTATTTT+GGG | - | chr1.4:50917663-50917682 | MS.gene72257:intron | 35.0% |
| !! | TCTTGACTTGAGTTGACTAA+TGG | - | chr1.4:50916645-50916664 | MS.gene72257:CDS | 35.0% |
| !! | TTCTGGAGGTGGATTTATTT+TGG | - | chr1.4:50917662-50917681 | MS.gene72257:intron | 35.0% |
| !!! | ATTGTTGCGGAATTGGTTTT+AGG | - | chr1.4:50916250-50916269 | MS.gene72257:intron | 35.0% |
| !!! | CCAATTGCATTTTTGGTGTT+TGG | - | chr1.4:50917483-50917502 | MS.gene72257:intron | 35.0% |
| !!! | CTTGTTTTGGCTACAGTTAT+TGG | - | chr1.4:50915761-50915780 | MS.gene72257:CDS | 35.0% |
| !!! | GGTTTTAGGTATGATAATGG+GGG | - | chr1.4:50916264-50916283 | MS.gene72257:intron | 35.0% |
| !!! | TCAGTGTTGTTTTCCCTTTT+TGG | - | chr1.4:50916416-50916435 | MS.gene72257:intron | 35.0% |
| AACACTGGTCAACACAATTG+CGG | + | chr1.4:50917835-50917854 | None:intergenic | 40.0% | |
| AACAGAGCTCTTATAGTGAG+AGG | + | chr1.4:50917158-50917177 | None:intergenic | 40.0% | |
| AACTCTAACCGTTATGGTTC+TGG | - | chr1.4:50915602-50915621 | MS.gene72257:intron | 40.0% | |
| AACTGCTAAGCAAGCTACTT+TGG | - | chr1.4:50916770-50916789 | MS.gene72257:intron | 40.0% | |
| ACAATGTAGCTATAGTGTGG+CGG | + | chr1.4:50918043-50918062 | None:intergenic | 40.0% | |
| ACAGAGCTCTTATAGTGAGA+GGG | + | chr1.4:50917157-50917176 | None:intergenic | 40.0% | |
| AGGACAGTGATAAGCCAAAA+AGG | + | chr1.4:50916433-50916452 | None:intergenic | 40.0% | |
| ATTGTAGGTGGAATTGTTGG+AGG | - | chr1.4:50917630-50917649 | MS.gene72257:intron | 40.0% | |
| CAAAGATCACAGAATGAGGA+TGG | - | chr1.4:50917527-50917546 | MS.gene72257:intron | 40.0% | |
| CACAAACTGACCTAATCAGT+AGG | - | chr1.4:50916043-50916062 | MS.gene72257:intron | 40.0% | |
| CACTCATTGCACAAAATGCA+AGG | + | chr1.4:50917608-50917627 | None:intergenic | 40.0% | |
| CAGCTTCTATTTGACAACAC+CGG | - | chr1.4:50918148-50918167 | MS.gene72257:intron | 40.0% | |
| CATGAGTTCATGGGATTCTT+GGG | - | chr1.4:50918703-50918722 | MS.gene72257:CDS | 40.0% | |
| GAAATCGAACTCGGTATTTC+AGG | - | chr1.4:50915926-50915945 | MS.gene72257:CDS | 40.0% | |
| GAGCCTAGAATACATATGTG+AGG | - | chr1.4:50917557-50917576 | MS.gene72257:intron | 40.0% | |
| GATACACAACCATGAGTTCA+TGG | - | chr1.4:50918693-50918712 | MS.gene72257:CDS | 40.0% | |
| GGAACATATAGTGTACCTGA+GGG | + | chr1.4:50917716-50917735 | None:intergenic | 40.0% | |
| GGAATCAAACTCGGTATTCT+AGG | - | chr1.4:50916064-50916083 | MS.gene72257:intron | 40.0% | |
| GGACAGTGATAAGCCAAAAA+GGG | + | chr1.4:50916432-50916451 | None:intergenic | 40.0% | |
| GGTATTGTAGGTGGAATTGT+TGG | - | chr1.4:50917627-50917646 | MS.gene72257:intron | 40.0% | |
| GTCATTGTATTCATCCTCTC+TGG | - | chr1.4:50918517-50918536 | MS.gene72257:intron | 40.0% | |
| GTTTACAACATTCACACACG+CGG | - | chr1.4:50916086-50916105 | MS.gene72257:intron | 40.0% | |
| GTTTCAACCTTAGATGGAAG+AGG | - | chr1.4:50917069-50917088 | MS.gene72257:intron | 40.0% | |
| TCACTGATACCGATGAGTAT+CGG | + | chr1.4:50915974-50915993 | None:intergenic | 40.0% | |
| TGATCGGATAGCAACAATAG+TGG | - | chr1.4:50917765-50917784 | MS.gene72257:CDS | 40.0% | |
| TGCTATCCGATCAACAACAT+TGG | + | chr1.4:50917758-50917777 | None:intergenic | 40.0% | |
| TGGCAAAAATAACACCAGAG+AGG | + | chr1.4:50918534-50918553 | None:intergenic | 40.0% | |
| TGTGCAATGAGTGGTATTGT+AGG | - | chr1.4:50917615-50917634 | MS.gene72257:CDS | 40.0% | |
| TTTCAGCCAATGCTTATGCT+AGG | - | chr1.4:50916373-50916392 | MS.gene72257:intron | 40.0% | |
| ! | CTTGCATTTTGTGCAATGAG+TGG | - | chr1.4:50917606-50917625 | MS.gene72257:CDS | 40.0% |
| !! | TTTTAGTGCTTTTGGCTGTG+TGG | - | chr1.4:50917093-50917112 | MS.gene72257:CDS | 40.0% |
| !!! | CTGGAGGTGGATTTATTTTG+GGG | - | chr1.4:50917664-50917683 | MS.gene72257:intron | 40.0% |
| !!! | GGTTTTTTTGGATCAGCATG+TGG | - | chr1.4:50915782-50915801 | MS.gene72257:intron | 40.0% |
| AAGAGGTTCCCTATGCCTTA+TGG | - | chr1.4:50918296-50918315 | MS.gene72257:intron | 45.0% | |
| ACACACACACCGATACTCAT+CGG | - | chr1.4:50915962-50915981 | MS.gene72257:CDS | 45.0% | |
| ACACCTATCTCAAGGAGAAG+AGG | + | chr1.4:50917690-50917709 | None:intergenic | 45.0% | |
| AGAAAGAGCAGCAGCAGATT+TGG | + | chr1.4:50915876-50915895 | None:intergenic | 45.0% | |
| CAGTTTGGACCGTCAAATCA+AGG | + | chr1.4:50917385-50917404 | None:intergenic | 45.0% | |
| CCAAAACAGACACTGTGATG+AGG | + | chr1.4:50918438-50918457 | None:intergenic | 45.0% | |
| CCAAGAATCCCATGAACTCA+TGG | + | chr1.4:50918705-50918724 | None:intergenic | 45.0% | |
| CCATGAGTTCATGGGATTCT+TGG | - | chr1.4:50918702-50918721 | MS.gene72257:CDS | 45.0% | |
| CGACTAGAACTGCAAATCTC+AGG | + | chr1.4:50916909-50916928 | None:intergenic | 45.0% | |
| CTTCTATTTGACAACACCGG+TGG | - | chr1.4:50918151-50918170 | MS.gene72257:intron | 45.0% | |
| GCAATGAGTGGTATTGTAGG+TGG | - | chr1.4:50917618-50917637 | MS.gene72257:CDS | 45.0% | |
| GCTCTCACCATGGGTAATAA+TGG | - | chr1.4:50918556-50918575 | MS.gene72257:intron | 45.0% | |
| GGAATTGTTGGAGGCTTACT+TGG | - | chr1.4:50917639-50917658 | MS.gene72257:intron | 45.0% | |
| GGGAACATATAGTGTACCTG+AGG | + | chr1.4:50917717-50917736 | None:intergenic | 45.0% | |
| TGATTTGACGGTCCAAACTG+TGG | - | chr1.4:50917385-50917404 | MS.gene72257:intron | 45.0% | |
| ! | CCTCATCACAGTGTCTGTTT+TGG | - | chr1.4:50918435-50918454 | MS.gene72257:CDS | 45.0% |
| ! | GTATGGTATTGGGTGCTCTT+CGG | - | chr1.4:50917258-50917277 | MS.gene72257:CDS | 45.0% |
| ! | TGGTTTGCAGACTGATGTAG+AGG | - | chr1.4:50917227-50917246 | MS.gene72257:intron | 45.0% |
| !!! | ATCACAGTGTCTGTTTTGGC+TGG | - | chr1.4:50918439-50918458 | MS.gene72257:CDS | 45.0% |
| ACAGAATGAGGATGGGCACA+GGG | - | chr1.4:50917535-50917554 | MS.gene72257:intron | 50.0% | |
| AGGCCTGCAGTGTATGGTAT+TGG | - | chr1.4:50917247-50917266 | MS.gene72257:CDS | 50.0% | |
| ATGTAGAGGCCTGCAGTGTA+TGG | - | chr1.4:50917241-50917260 | MS.gene72257:intron | 50.0% | |
| CACCCAATACCATACACTGC+AGG | + | chr1.4:50917253-50917272 | None:intergenic | 50.0% | |
| GAGGGATGACACCTATCTCA+AGG | + | chr1.4:50917698-50917717 | None:intergenic | 50.0% | |
| GAGGGTTGAGACTCTTCTCA+AGG | - | chr1.4:50916614-50916633 | MS.gene72257:CDS | 50.0% | |
| GGCCTGCAGTGTATGGTATT+GGG | - | chr1.4:50917248-50917267 | MS.gene72257:CDS | 50.0% | |
| GGGCATCAGCATCATCAGTT+TGG | - | chr1.4:50916284-50916303 | MS.gene72257:intron | 50.0% | |
| GTTGGAGGCTTACTTGGTTC+TGG | - | chr1.4:50917645-50917664 | MS.gene72257:intron | 50.0% | |
| TTTGCCAGTGCTCTCACCAT+GGG | - | chr1.4:50918547-50918566 | MS.gene72257:intron | 50.0% | |
| ! | ATTACCCATGGTGAGAGCAC+TGG | + | chr1.4:50918554-50918573 | None:intergenic | 50.0% |
| ! | TGAGATAGGTGTCATCCCTC+AGG | - | chr1.4:50917698-50917717 | MS.gene72257:intron | 50.0% |
| ! | TTTTGCCAGTGCTCTCACCA+TGG | - | chr1.4:50918546-50918565 | MS.gene72257:intron | 50.0% |
| !!! | GTCTGTTTTGGCTGGCTTCT+GGG | - | chr1.4:50918447-50918466 | MS.gene72257:CDS | 50.0% |
| !!! | TCTGTTTTGGCTGGCTTCTG+GGG | - | chr1.4:50918448-50918467 | MS.gene72257:CDS | 50.0% |
| !!! | TGTCTGTTTTGGCTGGCTTC+TGG | - | chr1.4:50918446-50918465 | MS.gene72257:CDS | 50.0% |
| ACCACCACCAACACCACCAA+CGG | + | chr1.4:50915810-50915829 | None:intergenic | 55.0% | |
| CAACACTCGCACACTGACAC+CGG | - | chr1.4:50916165-50916184 | MS.gene72257:intron | 55.0% | |
| CACAGAATGAGGATGGGCAC+AGG | - | chr1.4:50917534-50917553 | MS.gene72257:intron | 55.0% | |
| CGCAGAGAGAGTAGCAAGAC+AGG | + | chr1.4:50915525-50915544 | None:intergenic | 55.0% | |
| GCAATAGCGTCACAGCGCAA+TGG | + | chr1.4:50918121-50918140 | None:intergenic | 55.0% | |
| GGATCAGCATGTGGAACCGT+TGG | - | chr1.4:50915791-50915810 | MS.gene72257:intron | 55.0% | |
| GGGCCTCTTCTCCTTGAGAT+AGG | - | chr1.4:50917684-50917703 | MS.gene72257:intron | 55.0% | |
| TCAGCATGTGGAACCGTTGG+TGG | - | chr1.4:50915794-50915813 | MS.gene72257:intron | 55.0% | |
| !! | GGAGGCTTACTTGGTTCTGG+AGG | - | chr1.4:50917648-50917667 | MS.gene72257:intron | 55.0% |
| !! | GGCTTACTTGGTTCTGGAGG+TGG | - | chr1.4:50917651-50917670 | MS.gene72257:intron | 55.0% |
| !! | TGTGGAACCGTTGGTGGTGT+TGG | - | chr1.4:50915800-50915819 | MS.gene72257:intron | 55.0% |
| TCACACACGCGGATCCTCGA+TGG | - | chr1.4:50916097-50916116 | MS.gene72257:intron | 60.0% | |
| ! | TTGGGTGCTCTTCGGCTTGC+AGG | - | chr1.4:50917266-50917285 | MS.gene72257:CDS | 60.0% |
| !! | ACCGTTGGTGGTGTTGGTGG+TGG | - | chr1.4:50915806-50915825 | MS.gene72257:intron | 60.0% |
| !! | GGAACCGTTGGTGGTGTTGG+TGG | - | chr1.4:50915803-50915822 | MS.gene72257:intron | 60.0% |
| !! | GTTGGTGGTGTTGGTGGTGG+TGG | - | chr1.4:50915809-50915828 | MS.gene72257:intron | 60.0% |
| CACTCGCACACTGACACCGG+TGG | - | chr1.4:50916168-50916187 | MS.gene72257:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50915476 | 50918741 | 50915476 | ID=MS.gene72257 |
| chr1.4 | mRNA | 50915476 | 50918741 | 50915476 | ID=MS.gene72257.t1;Parent=MS.gene72257 |
| chr1.4 | exon | 50918574 | 50918741 | 50918574 | ID=MS.gene72257.t1.exon1;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50918574 | 50918741 | 50918574 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50918318 | 50918477 | 50918318 | ID=MS.gene72257.t1.exon2;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50918318 | 50918477 | 50918318 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50917745 | 50917945 | 50917745 | ID=MS.gene72257.t1.exon3;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50917745 | 50917945 | 50917745 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50917582 | 50917643 | 50917582 | ID=MS.gene72257.t1.exon4;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50917582 | 50917643 | 50917582 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50917398 | 50917452 | 50917398 | ID=MS.gene72257.t1.exon5;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50917398 | 50917452 | 50917398 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50917242 | 50917297 | 50917242 | ID=MS.gene72257.t1.exon6;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50917242 | 50917297 | 50917242 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50917072 | 50917158 | 50917072 | ID=MS.gene72257.t1.exon7;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50917072 | 50917158 | 50917072 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50916930 | 50916980 | 50916930 | ID=MS.gene72257.t1.exon8;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50916930 | 50916980 | 50916930 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50916498 | 50916737 | 50916498 | ID=MS.gene72257.t1.exon9;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50916498 | 50916737 | 50916498 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50915900 | 50915993 | 50915900 | ID=MS.gene72257.t1.exon10;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50915900 | 50915993 | 50915900 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50915649 | 50915789 | 50915649 | ID=MS.gene72257.t1.exon11;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50915649 | 50915789 | 50915649 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| chr1.4 | exon | 50915476 | 50915555 | 50915476 | ID=MS.gene72257.t1.exon12;Parent=MS.gene72257.t1 |
| chr1.4 | CDS | 50915476 | 50915555 | 50915476 | ID=cds.MS.gene72257.t1;Parent=MS.gene72257.t1 |
| Gene Sequence |
| Protein sequence |
