Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47377.t1 | XP_024631267.1 | 97.2 | 464 | 13 | 0 | 1 | 464 | 1 | 464 | 7.60E-241 | 842.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47377.t1 | Q8S9J0 | 69.6 | 461 | 128 | 4 | 5 | 464 | 9 | 458 | 1.6e-170 | 600.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47377.t1 | A0A396JMY1 | 97.2 | 464 | 13 | 0 | 1 | 464 | 1 | 464 | 5.5e-241 | 842.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene47377 | 0.800486 | 1.41E-48 | -1.69E-46 |
| MS.gene049232 | MS.gene47377 | 0.824154 | 9.41E-54 | -1.69E-46 |
| MS.gene049396 | MS.gene47377 | 0.82745 | 1.55E-54 | -1.69E-46 |
| MS.gene049552 | MS.gene47377 | 0.825606 | 4.28E-54 | -1.69E-46 |
| MS.gene049656 | MS.gene47377 | 0.810925 | 9.04E-51 | -1.69E-46 |
| MS.gene050216 | MS.gene47377 | 0.800261 | 1.57E-48 | -1.69E-46 |
| MS.gene050323 | MS.gene47377 | 0.805005 | 1.64E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene47377 | -0.8211 | 4.83E-53 | -1.69E-46 |
| MS.gene050499 | MS.gene47377 | 0.818911 | 1.53E-52 | -1.69E-46 |
| MS.gene050502 | MS.gene47377 | 0.84612 | 2.65E-59 | -1.69E-46 |
| MS.gene050747 | MS.gene47377 | 0.827539 | 1.48E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene47377 | 0.829016 | 6.52E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene47377 | 0.83449 | 2.91E-56 | -1.69E-46 |
| MS.gene050950 | MS.gene47377 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene051509 | MS.gene47377 | 0.815143 | 1.07E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene47377 | 0.832385 | 9.74E-56 | -1.69E-46 |
| MS.gene052346 | MS.gene47377 | 0.806622 | 7.52E-50 | -1.69E-46 |
| MS.gene052503 | MS.gene47377 | 0.820532 | 6.53E-53 | -1.69E-46 |
| MS.gene052506 | MS.gene47377 | 0.802987 | 4.32E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene47377 | 0.825689 | 4.09E-54 | -1.69E-46 |
| MS.gene052825 | MS.gene47377 | 0.820448 | 6.82E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene47377 | 0.80972 | 1.65E-50 | -1.69E-46 |
| MS.gene053018 | MS.gene47377 | 0.809295 | 2.03E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene47377 | 0.819348 | 1.22E-52 | -1.69E-46 |
| MS.gene053318 | MS.gene47377 | 0.831866 | 1.31E-55 | -1.69E-46 |
| MS.gene053436 | MS.gene47377 | 0.850862 | 1.29E-60 | -1.69E-46 |
| MS.gene053505 | MS.gene47377 | 0.834216 | 3.41E-56 | -1.69E-46 |
| MS.gene053574 | MS.gene47377 | 0.83733 | 5.54E-57 | -1.69E-46 |
| MS.gene053626 | MS.gene47377 | 0.885913 | 5.40E-72 | -1.69E-46 |
| MS.gene053633 | MS.gene47377 | 0.809245 | 2.08E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene47377 | 0.868454 | 6.45E-66 | -1.69E-46 |
| MS.gene054486 | MS.gene47377 | 0.824273 | 8.82E-54 | -1.69E-46 |
| MS.gene054595 | MS.gene47377 | 0.845321 | 4.37E-59 | -1.69E-46 |
| MS.gene055486 | MS.gene47377 | 0.811065 | 8.44E-51 | -1.69E-46 |
| MS.gene055519 | MS.gene47377 | 0.826614 | 2.46E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene47377 | 0.805597 | 1.24E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene47377 | 0.857215 | 1.90E-62 | -1.69E-46 |
| MS.gene055911 | MS.gene47377 | 0.857788 | 1.29E-62 | -1.69E-46 |
| MS.gene05601 | MS.gene47377 | 0.84217 | 3.05E-58 | -1.69E-46 |
| MS.gene056040 | MS.gene47377 | 0.829691 | 4.47E-55 | -1.69E-46 |
| MS.gene056046 | MS.gene47377 | 0.80182 | 7.52E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene47377 | 0.860891 | 1.51E-63 | -1.69E-46 |
| MS.gene056310 | MS.gene47377 | -0.811363 | 7.27E-51 | -1.69E-46 |
| MS.gene056313 | MS.gene47377 | -0.816034 | 6.81E-52 | -1.69E-46 |
| MS.gene056346 | MS.gene47377 | 0.837887 | 3.99E-57 | -1.69E-46 |
| MS.gene056422 | MS.gene47377 | 0.821854 | 3.24E-53 | -1.69E-46 |
| MS.gene056448 | MS.gene47377 | 0.855491 | 6.09E-62 | -1.69E-46 |
| MS.gene056504 | MS.gene47377 | 0.805575 | 1.25E-49 | -1.69E-46 |
| MS.gene056647 | MS.gene47377 | -0.801357 | 9.35E-49 | -1.69E-46 |
| MS.gene056878 | MS.gene47377 | 0.82171 | 3.49E-53 | -1.69E-46 |
| MS.gene057086 | MS.gene47377 | 0.849983 | 2.28E-60 | -1.69E-46 |
| MS.gene057506 | MS.gene47377 | -0.812519 | 4.07E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene47377 | 0.815916 | 7.23E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene47377 | 0.833417 | 5.40E-56 | -1.69E-46 |
| MS.gene058157 | MS.gene47377 | 0.841905 | 3.58E-58 | -1.69E-46 |
| MS.gene058183 | MS.gene47377 | 0.820492 | 6.67E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene47377 | 0.811027 | 8.60E-51 | -1.69E-46 |
| MS.gene058420 | MS.gene47377 | 0.846882 | 1.64E-59 | -1.69E-46 |
| MS.gene058726 | MS.gene47377 | -0.810998 | 8.72E-51 | -1.69E-46 |
| MS.gene059034 | MS.gene47377 | 0.805444 | 1.33E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene47377 | 0.868513 | 6.17E-66 | -1.69E-46 |
| MS.gene059368 | MS.gene47377 | 0.857287 | 1.81E-62 | -1.69E-46 |
| MS.gene059517 | MS.gene47377 | 0.842797 | 2.08E-58 | -1.69E-46 |
| MS.gene059680 | MS.gene47377 | 0.81925 | 1.28E-52 | -1.69E-46 |
| MS.gene059718 | MS.gene47377 | 0.801494 | 8.77E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene47377 | 0.803471 | 3.43E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene47377 | 0.888528 | 5.45E-73 | -1.69E-46 |
| MS.gene060778 | MS.gene47377 | 0.845711 | 3.42E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene47377 | 0.834832 | 2.39E-56 | -1.69E-46 |
| MS.gene06097 | MS.gene47377 | 0.822362 | 2.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47377.t1 | MTR_1g061710 | 96.379 | 359 | 13 | 0 | 1 | 359 | 1 | 359 | 0.0 | 703 |
| MS.gene47377.t1 | MTR_1g061710 | 100.000 | 104 | 0 | 0 | 361 | 464 | 427 | 530 | 9.76e-60 | 204 |
| MS.gene47377.t1 | MTR_7g103300 | 74.194 | 465 | 115 | 3 | 1 | 464 | 1 | 461 | 0.0 | 621 |
| MS.gene47377.t1 | MTR_7g103300 | 72.907 | 454 | 113 | 4 | 1 | 453 | 1 | 445 | 0.0 | 582 |
| MS.gene47377.t1 | MTR_7g103300 | 77.506 | 409 | 88 | 2 | 57 | 464 | 8 | 413 | 0.0 | 577 |
| MS.gene47377.t1 | MTR_7g103300 | 77.540 | 374 | 80 | 2 | 92 | 464 | 1 | 371 | 0.0 | 548 |
| MS.gene47377.t1 | MTR_7g103300 | 72.222 | 396 | 105 | 3 | 1 | 395 | 1 | 392 | 1.14e-178 | 506 |
| MS.gene47377.t1 | MTR_7g103300 | 71.547 | 362 | 98 | 3 | 1 | 361 | 1 | 358 | 8.91e-158 | 451 |
| MS.gene47377.t1 | MTR_3g109950 | 51.147 | 436 | 198 | 6 | 31 | 463 | 44 | 467 | 1.71e-130 | 386 |
| MS.gene47377.t1 | MTR_8g077830 | 48.276 | 435 | 216 | 3 | 29 | 462 | 39 | 465 | 8.28e-123 | 366 |
| MS.gene47377.t1 | MTR_3g109950 | 51.699 | 412 | 184 | 6 | 31 | 439 | 44 | 443 | 3.59e-122 | 364 |
| MS.gene47377.t1 | MTR_5g019950 | 51.566 | 415 | 189 | 3 | 49 | 463 | 67 | 469 | 5.12e-116 | 349 |
| MS.gene47377.t1 | MTR_3g109950 | 51.648 | 364 | 161 | 6 | 31 | 391 | 44 | 395 | 7.02e-104 | 316 |
| MS.gene47377.t1 | MTR_8g088080 | 47.596 | 416 | 201 | 3 | 55 | 463 | 69 | 474 | 1.31e-103 | 317 |
| MS.gene47377.t1 | MTR_1g026910 | 43.839 | 422 | 219 | 5 | 49 | 462 | 44 | 455 | 1.13e-102 | 314 |
| MS.gene47377.t1 | MTR_8g088070 | 46.860 | 414 | 207 | 5 | 55 | 463 | 64 | 469 | 1.14e-99 | 307 |
| MS.gene47377.t1 | MTR_1g026910 | 43.609 | 399 | 207 | 5 | 49 | 439 | 44 | 432 | 6.47e-94 | 291 |
| MS.gene47377.t1 | MTR_2g010740 | 31.294 | 425 | 252 | 10 | 57 | 458 | 55 | 462 | 6.95e-40 | 149 |
| MS.gene47377.t1 | MTR_5g019970 | 56.731 | 104 | 45 | 0 | 360 | 463 | 6 | 109 | 8.88e-29 | 109 |
| MS.gene47377.t1 | MTR_2g010740 | 30.746 | 335 | 192 | 10 | 57 | 368 | 55 | 372 | 2.06e-26 | 110 |
| MS.gene47377.t1 | MTR_3g110012 | 51.163 | 86 | 20 | 1 | 330 | 393 | 60 | 145 | 4.21e-11 | 61.6 |
| MS.gene47377.t1 | MTR_3g109980 | 51.163 | 86 | 20 | 1 | 330 | 393 | 60 | 145 | 4.21e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47377.t1 | AT2G36630 | 70.282 | 461 | 125 | 4 | 5 | 464 | 9 | 458 | 0.0 | 583 |
| MS.gene47377.t1 | AT2G25737 | 52.844 | 422 | 177 | 5 | 50 | 463 | 66 | 473 | 6.43e-130 | 385 |
| MS.gene47377.t1 | AT2G25737 | 51.875 | 320 | 132 | 5 | 50 | 361 | 66 | 371 | 1.01e-86 | 270 |
| MS.gene47377.t1 | AT1G11540 | 27.876 | 452 | 301 | 7 | 18 | 458 | 9 | 446 | 7.48e-37 | 141 |
| MS.gene47377.t1 | AT1G11540 | 27.851 | 377 | 247 | 7 | 93 | 458 | 1 | 363 | 2.98e-35 | 135 |
| MS.gene47377.t1 | AT4G21250 | 30.645 | 434 | 247 | 8 | 26 | 442 | 33 | 429 | 1.01e-33 | 132 |
| MS.gene47377.t1 | AT1G61740 | 26.549 | 452 | 290 | 11 | 30 | 458 | 22 | 454 | 3.91e-33 | 130 |
| MS.gene47377.t1 | AT4G21260 | 27.400 | 427 | 235 | 11 | 24 | 442 | 14 | 373 | 5.37e-25 | 106 |
Find 93 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGGAGGTGGATTTATTT+TGG | 0.132041 | 1.4:-50977913 | MS.gene47377:CDS |
| CCTATGCTTAATCTTCTTCT+TGG | 0.184547 | 1.4:-50979732 | MS.gene47377:CDS |
| CCATGAGTTCATGGGATTCT+TGG | 0.257074 | 1.4:-50976873 | MS.gene47377:CDS |
| GCTACTTTGGTTAATTCTAA+TGG | 0.257433 | 1.4:-50978791 | MS.gene47377:CDS |
| GTTCTGGAACAGATAGAATT+TGG | 0.259719 | 1.4:-50979956 | MS.gene47377:CDS |
| ATGCCTCACATATGTATTCT+AGG | 0.262467 | 1.4:+50978015 | None:intergenic |
| TTACCTTGATGATTTGAATA+AGG | 0.268202 | 1.4:+50978447 | None:intergenic |
| GTTGGAGGCTTACTTGGTTC+TGG | 0.271593 | 1.4:-50977930 | MS.gene47377:CDS |
| TTCTCTGTTTCAACCTTAGA+TGG | 0.285945 | 1.4:-50978511 | MS.gene47377:CDS |
| AGAAAATTAGTTGCATTTCT+TGG | 0.286067 | 1.4:-50977091 | MS.gene47377:CDS |
| TTGGGTGCTCTTCGGCTTGC+AGG | 0.288226 | 1.4:-50978309 | MS.gene47377:intron |
| AGAAAGAGCAGCAGCAGATT+TGG | 0.288931 | 1.4:+50979701 | None:intergenic |
| AACTCTAACCGTTATGGTTC+TGG | 0.290533 | 1.4:-50979972 | MS.gene47377:CDS |
| CTAAAATCCTCTTCCATCTA+AGG | 0.311247 | 1.4:+50978498 | None:intergenic |
| GGGCCTCTTCTCCTTGAGAT+AGG | 0.312567 | 1.4:-50977891 | MS.gene47377:CDS |
| AGGACAGTGATAAGCCAAAA+AGG | 0.314523 | 1.4:+50979144 | None:intergenic |
| CCTCATCACAGTGTCTGTTT+TGG | 0.316799 | 1.4:-50977140 | MS.gene47377:CDS |
| ATTTAGTTGGAAACTTGTTT+TGG | 0.323990 | 1.4:-50979826 | MS.gene47377:CDS |
| CATGAGTTCATGGGATTCTT+GGG | 0.327579 | 1.4:-50976872 | MS.gene47377:CDS |
| CTCATTATCATTCTCTTCAT+AGG | 0.331159 | 1.4:-50979123 | MS.gene47377:intron |
| GCCAAATCATAGTCTAATAT+TGG | 0.339930 | 1.4:+50979231 | None:intergenic |
| GCCAATATTAGACTATGATT+TGG | 0.343903 | 1.4:-50979232 | MS.gene47377:CDS |
| GGCTTACTTGGTTCTGGAGG+TGG | 0.346407 | 1.4:-50977924 | MS.gene47377:CDS |
| TGCAGGAATTGGAATTTAGT+TGG | 0.363273 | 1.4:-50979839 | MS.gene47377:intron |
| GGAATTGTTGGAGGCTTACT+TGG | 0.374041 | 1.4:-50977936 | MS.gene47377:CDS |
| TTTGTGCAGGAACTTCTTTA+AGG | 0.376797 | 1.4:-50979009 | MS.gene47377:intron |
| GAAAATTAGTTGCATTTCTT+GGG | 0.377774 | 1.4:-50977090 | MS.gene47377:CDS |
| AAGAGGTTCCCTATGCCTTA+TGG | 0.397338 | 1.4:-50977279 | MS.gene47377:intron |
| AACTGCTAAGCAAGCTACTT+TGG | 0.413957 | 1.4:-50978804 | MS.gene47377:CDS |
| AGGCCTGCAGTGTATGGTAT+TGG | 0.427218 | 1.4:-50978328 | MS.gene47377:CDS |
| TAAAGAAAAGAAGTCAACTA+TGG | 0.432207 | 1.4:-50978620 | MS.gene47377:intron |
| GTCATTGTATTCATCCTCTC+TGG | 0.433319 | 1.4:-50977058 | MS.gene47377:CDS |
| GATACACAACCATGAGTTCA+TGG | 0.435806 | 1.4:-50976882 | MS.gene47377:CDS |
| TGTGCAATGAGTGGTATTGT+AGG | 0.441307 | 1.4:-50977960 | MS.gene47377:CDS |
| GTATGGTATTGGGTGCTCTT+CGG | 0.446576 | 1.4:-50978317 | MS.gene47377:CDS |
| ACCGTTGGTGGTGTTGGTGG+TGG | 0.448909 | 1.4:-50979768 | MS.gene47377:CDS |
| GTTGGTGGTGTTGGTGGTGG+TGG | 0.454327 | 1.4:-50979765 | MS.gene47377:CDS |
| TCATCAAACTCTAACCGTTA+TGG | 0.454959 | 1.4:-50979978 | MS.gene47377:CDS |
| GGGCATCAGCATCATCAGTT+TGG | 0.457173 | 1.4:-50979290 | MS.gene47377:CDS |
| CCTCCTTATTCAAATCATCA+AGG | 0.464837 | 1.4:-50978450 | MS.gene47377:intron |
| GTTTCAACCTTAGATGGAAG+AGG | 0.471805 | 1.4:-50978505 | MS.gene47377:CDS |
| CGCAGAGAGAGTAGCAAGAC+AGG | 0.482761 | 1.4:+50980052 | None:intergenic |
| CACAGAATGAGGATGGGCAC+AGG | 0.484366 | 1.4:-50978041 | MS.gene47377:CDS |
| GGCCTGCAGTGTATGGTATT+GGG | 0.487342 | 1.4:-50978327 | MS.gene47377:CDS |
| GGTATTGTAGGTGGAATTGT+TGG | 0.495520 | 1.4:-50977948 | MS.gene47377:CDS |
| TTTCAGCCAATGCTTATGCT+AGG | 0.504558 | 1.4:-50979201 | MS.gene47377:CDS |
| TTTGCCAGTGCTCTCACCAT+GGG | 0.516548 | 1.4:-50977028 | MS.gene47377:intron |
| ATTGTAGGTGGAATTGTTGG+AGG | 0.521718 | 1.4:-50977945 | MS.gene47377:CDS |
| TGTGGAACCGTTGGTGGTGT+TGG | 0.524570 | 1.4:-50979774 | MS.gene47377:CDS |
| TCTTTAAGGTCATTCTTCAA+AGG | 0.527965 | 1.4:-50978995 | MS.gene47377:CDS |
| CACTCATTGCACAAAATGCA+AGG | 0.529460 | 1.4:+50977970 | None:intergenic |
| TCAAAGGAATTGAAATGTGG+AGG | 0.529502 | 1.4:-50978979 | MS.gene47377:CDS |
| CAAAGATCACAGAATGAGGA+TGG | 0.531696 | 1.4:-50978048 | MS.gene47377:CDS |
| TATGTGAGGCATCAATAGAA+TGG | 0.532905 | 1.4:-50978004 | MS.gene47377:CDS |
| ATGTAGAGGCCTGCAGTGTA+TGG | 0.533143 | 1.4:-50978334 | MS.gene47377:CDS |
| TGAGATAGGTGTCATCCCTC+AGG | 0.534173 | 1.4:-50977877 | MS.gene47377:intron |
| TCTAATGGAGAATTTAAAGC+AGG | 0.535837 | 1.4:-50978776 | MS.gene47377:intron |
| CCTTGATGATTTGAATAAGG+AGG | 0.539252 | 1.4:+50978450 | None:intergenic |
| GGAACCGTTGGTGGTGTTGG+TGG | 0.539356 | 1.4:-50979771 | MS.gene47377:CDS |
| TTGAATTCTACATTCTCAAG+AGG | 0.545752 | 1.4:-50977296 | MS.gene47377:CDS |
| TGAAGATTACCATAAGGCAT+AGG | 0.546602 | 1.4:+50977270 | None:intergenic |
| ACCACCACCAACACCACCAA+CGG | 0.547510 | 1.4:+50979767 | None:intergenic |
| CCAAGAATCCCATGAACTCA+TGG | 0.548829 | 1.4:+50976873 | None:intergenic |
| ATTACCCATGGTGAGAGCAC+TGG | 0.549613 | 1.4:+50977024 | None:intergenic |
| GGAGGCTTACTTGGTTCTGG+AGG | 0.552125 | 1.4:-50977927 | MS.gene47377:CDS |
| TATCTGTTCCAGAACCATAA+CGG | 0.554023 | 1.4:+50979964 | None:intergenic |
| AATTAGTTGCATTTCTTGGG+AGG | 0.558277 | 1.4:-50977087 | MS.gene47377:CDS |
| GAAGATTACCATAAGGCATA+GGG | 0.560541 | 1.4:+50977271 | None:intergenic |
| ATTAGTTGCATTTCTTGGGA+GGG | 0.561323 | 1.4:-50977086 | MS.gene47377:CDS |
| GGATCAGCATGTGGAACCGT+TGG | 0.569477 | 1.4:-50979783 | MS.gene47377:CDS |
| CAAAGGAATTGAAATGTGGA+GGG | 0.569796 | 1.4:-50978978 | MS.gene47377:CDS |
| GTAATTCCTAGCATAAGCAT+TGG | 0.571681 | 1.4:+50979195 | None:intergenic |
| CTATGAAGAGAATGATAATG+AGG | 0.579843 | 1.4:+50979124 | None:intergenic |
| TGTACAAAGATCACAGAATG+AGG | 0.585072 | 1.4:-50978052 | MS.gene47377:CDS |
| GTTTGATGATGATGATAACA+AGG | 0.587310 | 1.4:+50979992 | None:intergenic |
| TCAGCATGTGGAACCGTTGG+TGG | 0.590204 | 1.4:-50979780 | MS.gene47377:CDS |
| TGGTTTGCAGACTGATGTAG+AGG | 0.594763 | 1.4:-50978348 | MS.gene47377:intron |
| GATGATAACAAGGAGAATGA+TGG | 0.600061 | 1.4:+50980002 | None:intergenic |
| TCTTCAAAGGAATTGAAATG+TGG | 0.607269 | 1.4:-50978982 | MS.gene47377:CDS |
| GAGGGTTGAGACTCTTCTCA+AGG | 0.609115 | 1.4:-50978960 | MS.gene47377:intron |
| ACACCTATCTCAAGGAGAAG+AGG | 0.611353 | 1.4:+50977888 | None:intergenic |
| CCAAGAAGAAGATTAAGCAT+AGG | 0.611625 | 1.4:+50979732 | None:intergenic |
| ATACACAACCATGAGTTCAT+GGG | 0.614070 | 1.4:-50976881 | MS.gene47377:CDS |
| CACCCAATACCATACACTGC+AGG | 0.618863 | 1.4:+50978325 | None:intergenic |
| ACAGAATGAGGATGGGCACA+GGG | 0.625351 | 1.4:-50978040 | MS.gene47377:CDS |
| AGTTTGGTATAATTTGAGAG+TGG | 0.626700 | 1.4:-50979274 | MS.gene47377:CDS |
| GAGGGATGACACCTATCTCA+AGG | 0.628407 | 1.4:+50977880 | None:intergenic |
| ACTCATTGCACAAAATGCAA+GGG | 0.642562 | 1.4:+50977971 | None:intergenic |
| CTTATGCTAGGAATTACTGT+TGG | 0.643330 | 1.4:-50979189 | MS.gene47377:CDS |
| AAAGATCACAGAATGAGGAT+GGG | 0.663631 | 1.4:-50978047 | MS.gene47377:CDS |
| GCAATGAGTGGTATTGTAGG+TGG | 0.666887 | 1.4:-50977957 | MS.gene47377:CDS |
| CCAAAACAGACACTGTGATG+AGG | 0.668862 | 1.4:+50977140 | None:intergenic |
| GAGCCTAGAATACATATGTG+AGG | 0.685813 | 1.4:-50978018 | MS.gene47377:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATGTTTATGTTTATA+TGG | - | chr1.4:50977075-50977094 | MS.gene47377:CDS | 10.0% |
| !! | AAAACAAAAATTAGAGAAAA+AGG | + | chr1.4:50978114-50978133 | None:intergenic | 15.0% |
| !! | TAAAATAAACAGTTTATTGT+TGG | - | chr1.4:50978586-50978605 | MS.gene47377:intron | 15.0% |
| !!! | AATCATTAATTCAAGTTTTT+AGG | - | chr1.4:50978073-50978092 | MS.gene47377:CDS | 15.0% |
| !!! | ATGTTATACATTTTTATTTC+AGG | - | chr1.4:50980019-50980038 | MS.gene47377:CDS | 15.0% |
| !!! | ATTTATAGAGTTTTAAGAAA+AGG | + | chr1.4:50978797-50978816 | None:intergenic | 15.0% |
| !!! | ATTTATTTTTATTTTTGTGC+AGG | - | chr1.4:50977932-50977951 | MS.gene47377:CDS | 15.0% |
| !!! | TTTTTTTAATGTGTTATTGA+AGG | - | chr1.4:50977044-50977063 | MS.gene47377:CDS | 15.0% |
| !! | AAAGAGTAAGAAAAATTTAC+AGG | + | chr1.4:50977024-50977043 | None:intergenic | 20.0% |
| !! | AAATAAATTCATAAGGCATA+GGG | + | chr1.4:50979779-50979798 | None:intergenic | 20.0% |
| !! | ATTATTGTTGTGTAGAAAAA+TGG | + | chr1.4:50977914-50977933 | None:intergenic | 20.0% |
| !! | TGCAAACAAATAAATTCATA+AGG | + | chr1.4:50979786-50979805 | None:intergenic | 20.0% |
| !! | TGGATATATATGCTTATAAT+AGG | - | chr1.4:50978045-50978064 | MS.gene47377:CDS | 20.0% |
| !!! | ATAAACTATGAAGTTTTTTG+TGG | + | chr1.4:50976869-50976888 | None:intergenic | 20.0% |
| !!! | ATTTTTATTTCAGGTATTGT+TGG | - | chr1.4:50980028-50980047 | MS.gene47377:CDS | 20.0% |
| !!! | TATTATTGATTGAATTGTTG+CGG | - | chr1.4:50977617-50977636 | MS.gene47377:intron | 20.0% |
| ! | AAAACTCTATAAATGCAATG+TGG | - | chr1.4:50978803-50978822 | MS.gene47377:CDS | 25.0% |
| ! | ACTGCAATTCATAATATGTT+TGG | + | chr1.4:50978692-50978711 | None:intergenic | 25.0% |
| ! | AGAAAATTAGTTGCATTTCT+TGG | - | chr1.4:50979863-50979882 | MS.gene47377:intron | 25.0% |
| ! | ATGCTGATAATTTAAATTGC+AGG | - | chr1.4:50979581-50979600 | MS.gene47377:intron | 25.0% |
| ! | ATTTCTCAAAAACATCACAA+TGG | + | chr1.4:50977596-50977615 | None:intergenic | 25.0% |
| ! | CAAATAAATTCATAAGGCAT+AGG | + | chr1.4:50979780-50979799 | None:intergenic | 25.0% |
| ! | CAATTGACAATTGAAAATTC+TGG | + | chr1.4:50979353-50979372 | None:intergenic | 25.0% |
| ! | GAAAATTAGTTGCATTTCTT+GGG | - | chr1.4:50979864-50979883 | MS.gene47377:intron | 25.0% |
| ! | TAAAGAAAAGAAGTCAACTA+TGG | - | chr1.4:50978334-50978353 | MS.gene47377:CDS | 25.0% |
| ! | TATACAAATTTCCACAATAG+TGG | - | chr1.4:50978201-50978220 | MS.gene47377:intron | 25.0% |
| ! | TCATATAAATCAGCAAATTG+AGG | + | chr1.4:50979968-50979987 | None:intergenic | 25.0% |
| !! | GGATCCATTTTCAATTTAAT+TGG | - | chr1.4:50979728-50979747 | MS.gene47377:CDS | 25.0% |
| !! | TTACCTTGATGATTTGAATA+AGG | + | chr1.4:50978510-50978529 | None:intergenic | 25.0% |
| !!! | ATAGTTGACTTCTTTTCTTT+AGG | + | chr1.4:50978335-50978354 | None:intergenic | 25.0% |
| !!! | ATTGGTTTTAGGTATGATAA+TGG | - | chr1.4:50977641-50977660 | MS.gene47377:intron | 25.0% |
| !!! | ATTTAGTTGGAAACTTGTTT+TGG | - | chr1.4:50977128-50977147 | MS.gene47377:CDS | 25.0% |
| !!! | TAGTTGACTTCTTTTCTTTA+GGG | + | chr1.4:50978334-50978353 | None:intergenic | 25.0% |
| !!! | TTGGTTTTAGGTATGATAAT+GGG | - | chr1.4:50977642-50977661 | MS.gene47377:intron | 25.0% |
| AGAATAAACTTAGATACCAC+CGG | + | chr1.4:50977567-50977586 | None:intergenic | 30.0% | |
| AGATAAGATAACCACTATTG+TGG | + | chr1.4:50978215-50978234 | None:intergenic | 30.0% | |
| AGTTTGGTATAATTTGAGAG+TGG | - | chr1.4:50977680-50977699 | MS.gene47377:intron | 30.0% | |
| ATAAATCAGCAAATTGAGGT+AGG | + | chr1.4:50979964-50979983 | None:intergenic | 30.0% | |
| CCAGTACAATATTATAACAC+TGG | - | chr1.4:50979751-50979770 | MS.gene47377:CDS | 30.0% | |
| CCAGTGTTATAATATTGTAC+TGG | + | chr1.4:50979754-50979773 | None:intergenic | 30.0% | |
| CTCATTATCATTCTCTTCAT+AGG | - | chr1.4:50977831-50977850 | MS.gene47377:intron | 30.0% | |
| CTGGCCAATTAAATTGAAAA+TGG | + | chr1.4:50979735-50979754 | None:intergenic | 30.0% | |
| GCCAAATCATAGTCTAATAT+TGG | + | chr1.4:50977726-50977745 | None:intergenic | 30.0% | |
| GCCAATATTAGACTATGATT+TGG | - | chr1.4:50977722-50977741 | MS.gene47377:intron | 30.0% | |
| GGTAAGCAAAATTGAAAAGA+GGG | + | chr1.4:50979116-50979135 | None:intergenic | 30.0% | |
| TAATCAGTAGGAATCAAACT+CGG | - | chr1.4:50977435-50977454 | MS.gene47377:intron | 30.0% | |
| TATCAGTGAGTCTAATAAGT+AGG | - | chr1.4:50977365-50977384 | MS.gene47377:intron | 30.0% | |
| TCTGGTCAACACAATTAAAA+GGG | + | chr1.4:50979335-50979354 | None:intergenic | 30.0% | |
| TCTTCAAAGGAATTGAAATG+TGG | - | chr1.4:50977972-50977991 | MS.gene47377:CDS | 30.0% | |
| TGGTAAGCAAAATTGAAAAG+AGG | + | chr1.4:50979117-50979136 | None:intergenic | 30.0% | |
| TGTTTATTATGTGCAGGAAT+TGG | - | chr1.4:50977104-50977123 | MS.gene47377:CDS | 30.0% | |
| TTATCACTAGAAATCGAACT+CGG | - | chr1.4:50977297-50977316 | MS.gene47377:CDS | 30.0% | |
| TTATCATTCTCTTCATAGGT+TGG | - | chr1.4:50977835-50977854 | MS.gene47377:intron | 30.0% | |
| TTCTGGTCAACACAATTAAA+AGG | + | chr1.4:50979336-50979355 | None:intergenic | 30.0% | |
| TTGAATTCTACATTCTCAAG+AGG | - | chr1.4:50979658-50979677 | MS.gene47377:intron | 30.0% | |
| TTGGAAACTGAAACAGAAAA+TGG | + | chr1.4:50978846-50978865 | None:intergenic | 30.0% | |
| TTTGTGTGTTTATTATGTGC+AGG | - | chr1.4:50977098-50977117 | MS.gene47377:CDS | 30.0% | |
| ! | AATATTGGCACTTCTTTTGT+TGG | + | chr1.4:50977711-50977730 | None:intergenic | 30.0% |
| ! | CATCAAAAACCTTGATTTGA+CGG | - | chr1.4:50978752-50978771 | MS.gene47377:intron | 30.0% |
| ! | CTATGAAGAGAATGATAATG+AGG | + | chr1.4:50977833-50977852 | None:intergenic | 30.0% |
| ! | GCTACTTTGGTTAATTCTAA+TGG | - | chr1.4:50978163-50978182 | MS.gene47377:intron | 30.0% |
| ! | TCAGTTTCCAATTGCATTTT+TGG | - | chr1.4:50978855-50978874 | MS.gene47377:intron | 30.0% |
| ! | TCTAATGGAGAATTTAAAGC+AGG | - | chr1.4:50978178-50978197 | MS.gene47377:intron | 30.0% |
| !! | AAACAGAGAATTTGCTGAAA+GGG | + | chr1.4:50978433-50978452 | None:intergenic | 30.0% |
| !! | AGTTGATGAAGATTACCATA+AGG | + | chr1.4:50979693-50979712 | None:intergenic | 30.0% |
| !! | GTTTGATGATGATGATAACA+AGG | + | chr1.4:50976965-50976984 | None:intergenic | 30.0% |
| !! | TCTTTAAGGTCATTCTTCAA+AGG | - | chr1.4:50977959-50977978 | MS.gene47377:CDS | 30.0% |
| !! | TTCTTTTCTTTAGGGATCAA+TGG | + | chr1.4:50978326-50978345 | None:intergenic | 30.0% |
| !!! | AGTTTTTTATTTGTCACCAC+CGG | + | chr1.4:50979549-50979568 | None:intergenic | 30.0% |
| !!! | ATGATGGTTTTTGGTTGTTA+TGG | + | chr1.4:50976939-50976958 | None:intergenic | 30.0% |
| !!! | GCTACAGTTATTGGTTTTTT+TGG | - | chr1.4:50977150-50977169 | MS.gene47377:CDS | 30.0% |
| !!! | TGGTTTTAGGTATGATAATG+GGG | - | chr1.4:50977643-50977662 | MS.gene47377:intron | 30.0% |
| AAAGATCACAGAATGAGGAT+GGG | - | chr1.4:50978907-50978926 | MS.gene47377:intron | 35.0% | |
| AAAGGTTTATGACCACAGTT+TGG | + | chr1.4:50978779-50978798 | None:intergenic | 35.0% | |
| AAATCGAACTCGGTATTTCA+GGG | - | chr1.4:50977307-50977326 | MS.gene47377:CDS | 35.0% | |
| AATTAGTTGCATTTCTTGGG+AGG | - | chr1.4:50979867-50979886 | MS.gene47377:intron | 35.0% | |
| ACTCATTGCACAAAATGCAA+GGG | + | chr1.4:50978986-50979005 | None:intergenic | 35.0% | |
| AGAATTGAACTTCGTACTCT+AGG | - | chr1.4:50977517-50977536 | MS.gene47377:intron | 35.0% | |
| ATACACAACCATGAGTTCAT+GGG | - | chr1.4:50980073-50980092 | MS.gene47377:CDS | 35.0% | |
| ATCACAATGTAGCTATAGTG+TGG | + | chr1.4:50979425-50979444 | None:intergenic | 35.0% | |
| ATGCCTCACATATGTATTCT+AGG | + | chr1.4:50978942-50978961 | None:intergenic | 35.0% | |
| ATTAGTTGCATTTCTTGGGA+GGG | - | chr1.4:50979868-50979887 | MS.gene47377:intron | 35.0% | |
| CAAAGGAATTGAAATGTGGA+GGG | - | chr1.4:50977976-50977995 | MS.gene47377:CDS | 35.0% | |
| CCAAACACCAAAAATGCAAT+TGG | + | chr1.4:50978865-50978884 | None:intergenic | 35.0% | |
| CCAAGAAGAAGATTAAGCAT+AGG | + | chr1.4:50977225-50977244 | None:intergenic | 35.0% | |
| CCTATGCTTAATCTTCTTCT+TGG | - | chr1.4:50977222-50977241 | MS.gene47377:intron | 35.0% | |
| CCTCCTTATTCAAATCATCA+AGG | - | chr1.4:50978504-50978523 | MS.gene47377:CDS | 35.0% | |
| CGATTTAGTGTGTAGTGTAA+TGG | + | chr1.4:50979182-50979201 | None:intergenic | 35.0% | |
| CTAAAATCCTCTTCCATCTA+AGG | + | chr1.4:50978459-50978478 | None:intergenic | 35.0% | |
| CTTATGCTAGGAATTACTGT+TGG | - | chr1.4:50977765-50977784 | MS.gene47377:intron | 35.0% | |
| GAAGATTACCATAAGGCATA+GGG | + | chr1.4:50979686-50979705 | None:intergenic | 35.0% | |
| GAATTGAACTTCGTACTCTA+GGG | - | chr1.4:50977518-50977537 | MS.gene47377:intron | 35.0% | |
| GATGATAACAAGGAGAATGA+TGG | + | chr1.4:50976955-50976974 | None:intergenic | 35.0% | |
| GTAATTCCTAGCATAAGCAT+TGG | + | chr1.4:50977762-50977781 | None:intergenic | 35.0% | |
| TAGAAACATTGATACCATCG+AGG | + | chr1.4:50977494-50977513 | None:intergenic | 35.0% | |
| TAGGTTTCCATTATTACCCA+TGG | + | chr1.4:50979945-50979964 | None:intergenic | 35.0% | |
| TATCTGTTCCAGAACCATAA+CGG | + | chr1.4:50976993-50977012 | None:intergenic | 35.0% | |
| TCAAAGGAATTGAAATGTGG+AGG | - | chr1.4:50977975-50977994 | MS.gene47377:CDS | 35.0% | |
| TCAACTCTTCAAAGCTTAAC+TGG | - | chr1.4:50979707-50979726 | MS.gene47377:CDS | 35.0% | |
| TCATCAAACTCTAACCGTTA+TGG | - | chr1.4:50976976-50976995 | MS.gene47377:intron | 35.0% | |
| TGAAGATTACCATAAGGCAT+AGG | + | chr1.4:50979687-50979706 | None:intergenic | 35.0% | |
| TGATTGAATTGTTGCGGAAT+TGG | - | chr1.4:50977623-50977642 | MS.gene47377:intron | 35.0% | |
| TGCAGGAATTGGAATTTAGT+TGG | - | chr1.4:50977115-50977134 | MS.gene47377:CDS | 35.0% | |
| TGCTTACCAATGTTGTTGAT+CGG | - | chr1.4:50979128-50979147 | MS.gene47377:CDS | 35.0% | |
| TGTACAAAGATCACAGAATG+AGG | - | chr1.4:50978902-50978921 | MS.gene47377:intron | 35.0% | |
| TTCTCTGTTTCAACCTTAGA+TGG | - | chr1.4:50978443-50978462 | MS.gene47377:intron | 35.0% | |
| TTTGTGCAGGAACTTCTTTA+AGG | - | chr1.4:50977945-50977964 | MS.gene47377:CDS | 35.0% | |
| ! | ACAAGGAGAATGATGGTTTT+TGG | + | chr1.4:50976948-50976967 | None:intergenic | 35.0% |
| ! | CCTTGATGATTTGAATAAGG+AGG | + | chr1.4:50978507-50978526 | None:intergenic | 35.0% |
| ! | CGATTCACAATTGATAACAC+TGG | + | chr1.4:50979229-50979248 | None:intergenic | 35.0% |
| ! | GAGTTTGATTCCTACTGATT+AGG | + | chr1.4:50977436-50977455 | None:intergenic | 35.0% |
| ! | TATGTGAGGCATCAATAGAA+TGG | - | chr1.4:50978950-50978969 | MS.gene47377:intron | 35.0% |
| !! | GAAACAGAGAATTTGCTGAA+AGG | + | chr1.4:50978434-50978453 | None:intergenic | 35.0% |
| !! | GAAGAGGATTTTAGTGCTTT+TGG | - | chr1.4:50978465-50978484 | MS.gene47377:CDS | 35.0% |
| !! | GTTCTGGAACAGATAGAATT+TGG | - | chr1.4:50976998-50977017 | MS.gene47377:intron | 35.0% |
| !! | TCTGGAGGTGGATTTATTTT+GGG | - | chr1.4:50979042-50979061 | MS.gene47377:intron | 35.0% |
| !! | TCTTGACTTGAGTTGACTAA+TGG | - | chr1.4:50978025-50978044 | MS.gene47377:CDS | 35.0% |
| !! | TTCTGGAGGTGGATTTATTT+TGG | - | chr1.4:50979041-50979060 | MS.gene47377:intron | 35.0% |
| !!! | ATTGTTGCGGAATTGGTTTT+AGG | - | chr1.4:50977630-50977649 | MS.gene47377:intron | 35.0% |
| !!! | CCAATTGCATTTTTGGTGTT+TGG | - | chr1.4:50978862-50978881 | MS.gene47377:intron | 35.0% |
| !!! | CTTGTTTTGGCTACAGTTAT+TGG | - | chr1.4:50977141-50977160 | MS.gene47377:CDS | 35.0% |
| !!! | GGTTTTAGGTATGATAATGG+GGG | - | chr1.4:50977644-50977663 | MS.gene47377:intron | 35.0% |
| !!! | TCAGTGTTGTTTTCCCTTTT+TGG | - | chr1.4:50977796-50977815 | MS.gene47377:intron | 35.0% |
| AACACTGGTCAACACAATTG+CGG | + | chr1.4:50979214-50979233 | None:intergenic | 40.0% | |
| AACAGAGCTCTTATAGTGAG+AGG | + | chr1.4:50978538-50978557 | None:intergenic | 40.0% | |
| AACTCTAACCGTTATGGTTC+TGG | - | chr1.4:50976982-50977001 | MS.gene47377:intron | 40.0% | |
| AACTGCTAAGCAAGCTACTT+TGG | - | chr1.4:50978150-50978169 | MS.gene47377:intron | 40.0% | |
| ACAATGTAGCTATAGTGTGG+CGG | + | chr1.4:50979422-50979441 | None:intergenic | 40.0% | |
| ACAGAGCTCTTATAGTGAGA+GGG | + | chr1.4:50978537-50978556 | None:intergenic | 40.0% | |
| AGGACAGTGATAAGCCAAAA+AGG | + | chr1.4:50977813-50977832 | None:intergenic | 40.0% | |
| ATTGTAGGTGGAATTGTTGG+AGG | - | chr1.4:50979009-50979028 | MS.gene47377:intron | 40.0% | |
| CAAAGATCACAGAATGAGGA+TGG | - | chr1.4:50978906-50978925 | MS.gene47377:intron | 40.0% | |
| CACAAACTGACCTAATCAGT+AGG | - | chr1.4:50977423-50977442 | MS.gene47377:intron | 40.0% | |
| CACTCATTGCACAAAATGCA+AGG | + | chr1.4:50978987-50979006 | None:intergenic | 40.0% | |
| CAGCTTCTATTTGACAACAC+CGG | - | chr1.4:50979527-50979546 | MS.gene47377:intron | 40.0% | |
| CATGAGTTCATGGGATTCTT+GGG | - | chr1.4:50980082-50980101 | MS.gene47377:CDS | 40.0% | |
| GAAATCGAACTCGGTATTTC+AGG | - | chr1.4:50977306-50977325 | MS.gene47377:CDS | 40.0% | |
| GAGCCTAGAATACATATGTG+AGG | - | chr1.4:50978936-50978955 | MS.gene47377:intron | 40.0% | |
| GATACACAACCATGAGTTCA+TGG | - | chr1.4:50980072-50980091 | MS.gene47377:CDS | 40.0% | |
| GGAACATATAGTGTACCTGA+GGG | + | chr1.4:50979095-50979114 | None:intergenic | 40.0% | |
| GGAATCAAACTCGGTATTCT+AGG | - | chr1.4:50977444-50977463 | MS.gene47377:intron | 40.0% | |
| GGACAGTGATAAGCCAAAAA+GGG | + | chr1.4:50977812-50977831 | None:intergenic | 40.0% | |
| GGTATTGTAGGTGGAATTGT+TGG | - | chr1.4:50979006-50979025 | MS.gene47377:intron | 40.0% | |
| GTCATTGTATTCATCCTCTC+TGG | - | chr1.4:50979896-50979915 | MS.gene47377:intron | 40.0% | |
| GTTTACAACATTCACACACG+CGG | - | chr1.4:50977466-50977485 | MS.gene47377:intron | 40.0% | |
| GTTTCAACCTTAGATGGAAG+AGG | - | chr1.4:50978449-50978468 | MS.gene47377:intron | 40.0% | |
| TCACTGATACCGATGAGTAT+CGG | + | chr1.4:50977354-50977373 | None:intergenic | 40.0% | |
| TGATCGGATAGCAACAATAG+TGG | - | chr1.4:50979144-50979163 | MS.gene47377:CDS | 40.0% | |
| TGCTATCCGATCAACAACAT+TGG | + | chr1.4:50979137-50979156 | None:intergenic | 40.0% | |
| TGGCAAAAATAACACCAGAG+AGG | + | chr1.4:50979913-50979932 | None:intergenic | 40.0% | |
| TGTGCAATGAGTGGTATTGT+AGG | - | chr1.4:50978994-50979013 | MS.gene47377:CDS | 40.0% | |
| TTTCAGCCAATGCTTATGCT+AGG | - | chr1.4:50977753-50977772 | MS.gene47377:intron | 40.0% | |
| ! | CTTGCATTTTGTGCAATGAG+TGG | - | chr1.4:50978985-50979004 | MS.gene47377:CDS | 40.0% |
| !! | TTTTAGTGCTTTTGGCTGTG+TGG | - | chr1.4:50978473-50978492 | MS.gene47377:CDS | 40.0% |
| !!! | CTGGAGGTGGATTTATTTTG+GGG | - | chr1.4:50979043-50979062 | MS.gene47377:intron | 40.0% |
| !!! | GGTTTTTTTGGATCAGCATG+TGG | - | chr1.4:50977162-50977181 | MS.gene47377:intron | 40.0% |
| AAGAGGTTCCCTATGCCTTA+TGG | - | chr1.4:50979675-50979694 | MS.gene47377:intron | 45.0% | |
| ACACACACACCGATACTCAT+CGG | - | chr1.4:50977342-50977361 | MS.gene47377:CDS | 45.0% | |
| ACACCTATCTCAAGGAGAAG+AGG | + | chr1.4:50979069-50979088 | None:intergenic | 45.0% | |
| AGAAAGAGCAGCAGCAGATT+TGG | + | chr1.4:50977256-50977275 | None:intergenic | 45.0% | |
| CAGTTTGGACCGTCAAATCA+AGG | + | chr1.4:50978764-50978783 | None:intergenic | 45.0% | |
| CCAAAACAGACACTGTGATG+AGG | + | chr1.4:50979817-50979836 | None:intergenic | 45.0% | |
| CCAAGAATCCCATGAACTCA+TGG | + | chr1.4:50980084-50980103 | None:intergenic | 45.0% | |
| CCATGAGTTCATGGGATTCT+TGG | - | chr1.4:50980081-50980100 | MS.gene47377:CDS | 45.0% | |
| CGACTAGAACTGCAAATCTC+AGG | + | chr1.4:50978289-50978308 | None:intergenic | 45.0% | |
| CTTCTATTTGACAACACCGG+TGG | - | chr1.4:50979530-50979549 | MS.gene47377:intron | 45.0% | |
| GCAATGAGTGGTATTGTAGG+TGG | - | chr1.4:50978997-50979016 | MS.gene47377:CDS | 45.0% | |
| GCTCTCACCATGGGTAATAA+TGG | - | chr1.4:50979935-50979954 | MS.gene47377:intron | 45.0% | |
| GGAATTGTTGGAGGCTTACT+TGG | - | chr1.4:50979018-50979037 | MS.gene47377:intron | 45.0% | |
| GGGAACATATAGTGTACCTG+AGG | + | chr1.4:50979096-50979115 | None:intergenic | 45.0% | |
| TGATTTGACGGTCCAAACTG+TGG | - | chr1.4:50978764-50978783 | MS.gene47377:intron | 45.0% | |
| ! | CCTCATCACAGTGTCTGTTT+TGG | - | chr1.4:50979814-50979833 | MS.gene47377:CDS | 45.0% |
| ! | GTATGGTATTGGGTGCTCTT+CGG | - | chr1.4:50978637-50978656 | MS.gene47377:CDS | 45.0% |
| ! | TGGTTTGCAGACTGATGTAG+AGG | - | chr1.4:50978606-50978625 | MS.gene47377:intron | 45.0% |
| !!! | ATCACAGTGTCTGTTTTGGC+TGG | - | chr1.4:50979818-50979837 | MS.gene47377:CDS | 45.0% |
| ACAGAATGAGGATGGGCACA+GGG | - | chr1.4:50978914-50978933 | MS.gene47377:intron | 50.0% | |
| AGGCCTGCAGTGTATGGTAT+TGG | - | chr1.4:50978626-50978645 | MS.gene47377:CDS | 50.0% | |
| ATGTAGAGGCCTGCAGTGTA+TGG | - | chr1.4:50978620-50978639 | MS.gene47377:intron | 50.0% | |
| CACCCAATACCATACACTGC+AGG | + | chr1.4:50978632-50978651 | None:intergenic | 50.0% | |
| GAGGGATGACACCTATCTCA+AGG | + | chr1.4:50979077-50979096 | None:intergenic | 50.0% | |
| GAGGGTTGAGACTCTTCTCA+AGG | - | chr1.4:50977994-50978013 | MS.gene47377:CDS | 50.0% | |
| GGCCTGCAGTGTATGGTATT+GGG | - | chr1.4:50978627-50978646 | MS.gene47377:CDS | 50.0% | |
| GGGCATCAGCATCATCAGTT+TGG | - | chr1.4:50977664-50977683 | MS.gene47377:intron | 50.0% | |
| GTTGGAGGCTTACTTGGTTC+TGG | - | chr1.4:50979024-50979043 | MS.gene47377:intron | 50.0% | |
| TTTGCCAGTGCTCTCACCAT+GGG | - | chr1.4:50979926-50979945 | MS.gene47377:intron | 50.0% | |
| ! | ATTACCCATGGTGAGAGCAC+TGG | + | chr1.4:50979933-50979952 | None:intergenic | 50.0% |
| ! | TGAGATAGGTGTCATCCCTC+AGG | - | chr1.4:50979077-50979096 | MS.gene47377:intron | 50.0% |
| ! | TTTTGCCAGTGCTCTCACCA+TGG | - | chr1.4:50979925-50979944 | MS.gene47377:intron | 50.0% |
| !!! | GTCTGTTTTGGCTGGCTTCT+GGG | - | chr1.4:50979826-50979845 | MS.gene47377:CDS | 50.0% |
| !!! | TCTGTTTTGGCTGGCTTCTG+GGG | - | chr1.4:50979827-50979846 | MS.gene47377:CDS | 50.0% |
| !!! | TGTCTGTTTTGGCTGGCTTC+TGG | - | chr1.4:50979825-50979844 | MS.gene47377:CDS | 50.0% |
| ACCACCACCAACACCACCAA+CGG | + | chr1.4:50977190-50977209 | None:intergenic | 55.0% | |
| CAACACTCGCACACTGACAC+CGG | - | chr1.4:50977545-50977564 | MS.gene47377:intron | 55.0% | |
| CACAGAATGAGGATGGGCAC+AGG | - | chr1.4:50978913-50978932 | MS.gene47377:intron | 55.0% | |
| CGCAGAGAGAGTAGCAAGAC+AGG | + | chr1.4:50976905-50976924 | None:intergenic | 55.0% | |
| GCAATAGCGTCACAGCGCAA+TGG | + | chr1.4:50979500-50979519 | None:intergenic | 55.0% | |
| GGATCAGCATGTGGAACCGT+TGG | - | chr1.4:50977171-50977190 | MS.gene47377:intron | 55.0% | |
| GGGCCTCTTCTCCTTGAGAT+AGG | - | chr1.4:50979063-50979082 | MS.gene47377:intron | 55.0% | |
| TCAGCATGTGGAACCGTTGG+TGG | - | chr1.4:50977174-50977193 | MS.gene47377:intron | 55.0% | |
| !! | GGAGGCTTACTTGGTTCTGG+AGG | - | chr1.4:50979027-50979046 | MS.gene47377:intron | 55.0% |
| !! | GGCTTACTTGGTTCTGGAGG+TGG | - | chr1.4:50979030-50979049 | MS.gene47377:intron | 55.0% |
| !! | TGTGGAACCGTTGGTGGTGT+TGG | - | chr1.4:50977180-50977199 | MS.gene47377:intron | 55.0% |
| TCACACACGCGGATCCTCGA+TGG | - | chr1.4:50977477-50977496 | MS.gene47377:intron | 60.0% | |
| ! | TTGGGTGCTCTTCGGCTTGC+AGG | - | chr1.4:50978645-50978664 | MS.gene47377:CDS | 60.0% |
| !! | ACCGTTGGTGGTGTTGGTGG+TGG | - | chr1.4:50977186-50977205 | MS.gene47377:intron | 60.0% |
| !! | GGAACCGTTGGTGGTGTTGG+TGG | - | chr1.4:50977183-50977202 | MS.gene47377:intron | 60.0% |
| !! | GTTGGTGGTGTTGGTGGTGG+TGG | - | chr1.4:50977189-50977208 | MS.gene47377:intron | 60.0% |
| CACTCGCACACTGACACCGG+TGG | - | chr1.4:50977548-50977567 | MS.gene47377:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50976856 | 50980120 | 50976856 | ID=MS.gene47377 |
| chr1.4 | mRNA | 50976856 | 50980120 | 50976856 | ID=MS.gene47377.t1;Parent=MS.gene47377 |
| chr1.4 | exon | 50979953 | 50980120 | 50979953 | ID=MS.gene47377.t1.exon1;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50979953 | 50980120 | 50979953 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50979697 | 50979856 | 50979697 | ID=MS.gene47377.t1.exon2;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50979697 | 50979856 | 50979697 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50979124 | 50979324 | 50979124 | ID=MS.gene47377.t1.exon3;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50979124 | 50979324 | 50979124 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50978961 | 50979022 | 50978961 | ID=MS.gene47377.t1.exon4;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50978961 | 50979022 | 50978961 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50978777 | 50978831 | 50978777 | ID=MS.gene47377.t1.exon5;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50978777 | 50978831 | 50978777 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50978621 | 50978676 | 50978621 | ID=MS.gene47377.t1.exon6;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50978621 | 50978676 | 50978621 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50978451 | 50978537 | 50978451 | ID=MS.gene47377.t1.exon7;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50978451 | 50978537 | 50978451 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50978310 | 50978360 | 50978310 | ID=MS.gene47377.t1.exon8;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50978310 | 50978360 | 50978310 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50977878 | 50978117 | 50977878 | ID=MS.gene47377.t1.exon9;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50977878 | 50978117 | 50977878 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50977280 | 50977373 | 50977280 | ID=MS.gene47377.t1.exon10;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50977280 | 50977373 | 50977280 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50977029 | 50977169 | 50977029 | ID=MS.gene47377.t1.exon11;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50977029 | 50977169 | 50977029 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| chr1.4 | exon | 50976856 | 50976935 | 50976856 | ID=MS.gene47377.t1.exon12;Parent=MS.gene47377.t1 |
| chr1.4 | CDS | 50976856 | 50976935 | 50976856 | ID=cds.MS.gene47377.t1;Parent=MS.gene47377.t1 |
| Gene Sequence |
| Protein sequence |
