Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99483.t1 | XP_003623328.1 | 97.5 | 482 | 12 | 0 | 4 | 485 | 2 | 483 | 6.80E-269 | 936.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99483.t1 | Q9M6N7 | 76.0 | 480 | 101 | 4 | 8 | 485 | 4 | 471 | 3.0e-209 | 729.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99483.t1 | G7KSC5 | 97.5 | 482 | 12 | 0 | 4 | 485 | 2 | 483 | 4.9e-269 | 936.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04920 | MS.gene99483 | 0.803651 | 3.15E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene99483 | 0.81669 | 4.86E-52 | -1.69E-46 |
| MS.gene049499 | MS.gene99483 | 0.815663 | 8.24E-52 | -1.69E-46 |
| MS.gene050300 | MS.gene99483 | -0.802063 | 6.70E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene99483 | 0.823702 | 1.20E-53 | -1.69E-46 |
| MS.gene051832 | MS.gene99483 | 0.804129 | 2.51E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene99483 | 0.807029 | 6.17E-50 | -1.69E-46 |
| MS.gene052533 | MS.gene99483 | 0.833458 | 5.27E-56 | -1.69E-46 |
| MS.gene052685 | MS.gene99483 | 0.829347 | 5.42E-55 | -1.69E-46 |
| MS.gene052686 | MS.gene99483 | 0.822201 | 2.69E-53 | -1.69E-46 |
| MS.gene053094 | MS.gene99483 | 0.810259 | 1.26E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene99483 | 0.81742 | 3.33E-52 | -1.69E-46 |
| MS.gene053340 | MS.gene99483 | 0.812556 | 3.99E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene99483 | 0.842847 | 2.01E-58 | -1.69E-46 |
| MS.gene054222 | MS.gene99483 | 0.851087 | 1.12E-60 | -1.69E-46 |
| MS.gene054892 | MS.gene99483 | 0.806328 | 8.68E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene99483 | 0.808051 | 3.74E-50 | -1.69E-46 |
| MS.gene055840 | MS.gene99483 | 0.808693 | 2.73E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene99483 | 0.809589 | 1.76E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene99483 | 0.84564 | 3.58E-59 | -1.69E-46 |
| MS.gene058159 | MS.gene99483 | 0.82342 | 1.40E-53 | -1.69E-46 |
| MS.gene058279 | MS.gene99483 | 0.81557 | 8.64E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene99483 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene05878 | MS.gene99483 | 0.801269 | 9.75E-49 | -1.69E-46 |
| MS.gene058897 | MS.gene99483 | 0.801765 | 7.72E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene99483 | 0.840563 | 8.07E-58 | -1.69E-46 |
| MS.gene059774 | MS.gene99483 | 0.832551 | 8.86E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene99483 | -0.839832 | 1.25E-57 | -1.69E-46 |
| MS.gene059901 | MS.gene99483 | -0.81279 | 3.55E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene99483 | 0.803647 | 3.15E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene99483 | 0.839467 | 1.56E-57 | -1.69E-46 |
| MS.gene060412 | MS.gene99483 | 0.801108 | 1.05E-48 | -1.69E-46 |
| MS.gene060697 | MS.gene99483 | 0.828909 | 6.92E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene99483 | 0.804518 | 2.08E-49 | -1.69E-46 |
| MS.gene060937 | MS.gene99483 | 0.815973 | 7.03E-52 | -1.69E-46 |
| MS.gene061188 | MS.gene99483 | 0.833793 | 4.35E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99483.t1 | MTR_7g069640 | 97.510 | 482 | 12 | 0 | 4 | 485 | 2 | 483 | 0.0 | 948 |
| MS.gene99483.t1 | MTR_7g069640 | 95.833 | 144 | 6 | 0 | 483 | 626 | 344 | 487 | 3.37e-88 | 283 |
| MS.gene99483.t1 | MTR_4g017820 | 85.386 | 479 | 68 | 2 | 8 | 485 | 6 | 483 | 0.0 | 795 |
| MS.gene99483.t1 | MTR_4g017820 | 80.690 | 145 | 27 | 1 | 483 | 626 | 343 | 487 | 1.64e-60 | 209 |
| MS.gene99483.t1 | MTR_8g095040 | 75.431 | 464 | 108 | 2 | 17 | 475 | 22 | 484 | 0.0 | 667 |
| MS.gene99483.t1 | MTR_8g095040 | 66.667 | 135 | 40 | 1 | 483 | 612 | 350 | 484 | 1.22e-36 | 143 |
| MS.gene99483.t1 | MTR_1g036410 | 61.746 | 481 | 155 | 5 | 14 | 484 | 14 | 475 | 0.0 | 570 |
| MS.gene99483.t1 | MTR_1g036410 | 47.712 | 153 | 71 | 3 | 483 | 626 | 328 | 480 | 5.76e-33 | 132 |
| MS.gene99483.t1 | MTR_8g074750 | 59.756 | 492 | 159 | 8 | 6 | 483 | 5 | 471 | 0.0 | 553 |
| MS.gene99483.t1 | MTR_8g074750 | 46.897 | 145 | 64 | 4 | 483 | 620 | 333 | 471 | 3.79e-30 | 124 |
| MS.gene99483.t1 | MTR_7g115050 | 55.365 | 466 | 176 | 6 | 16 | 468 | 13 | 459 | 6.15e-179 | 516 |
| MS.gene99483.t1 | MTR_7g115050 | 38.686 | 137 | 74 | 2 | 479 | 605 | 323 | 459 | 1.49e-22 | 101 |
| MS.gene99483.t1 | MTR_1g045550 | 25.478 | 471 | 288 | 12 | 24 | 464 | 48 | 485 | 4.19e-23 | 103 |
| MS.gene99483.t1 | MTR_1g079760 | 25.866 | 491 | 293 | 15 | 24 | 477 | 47 | 503 | 2.11e-19 | 92.4 |
| MS.gene99483.t1 | MTR_7g113340 | 24.524 | 473 | 291 | 13 | 24 | 464 | 47 | 485 | 1.03e-16 | 83.6 |
| MS.gene99483.t1 | MTR_3g463730 | 26.810 | 373 | 207 | 12 | 139 | 467 | 101 | 451 | 2.51e-15 | 79.3 |
| MS.gene99483.t1 | MTR_7g098930 | 22.774 | 483 | 291 | 11 | 24 | 466 | 47 | 487 | 3.47e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99483.t1 | AT2G38290 | 76.042 | 480 | 101 | 4 | 8 | 485 | 4 | 471 | 0.0 | 718 |
| MS.gene99483.t1 | AT2G38290 | 65.753 | 146 | 48 | 2 | 483 | 626 | 330 | 475 | 1.17e-53 | 191 |
| MS.gene99483.t1 | AT2G38290 | 78.028 | 355 | 76 | 2 | 133 | 485 | 1 | 355 | 0.0 | 547 |
| MS.gene99483.t1 | AT2G38290 | 65.753 | 146 | 48 | 2 | 483 | 626 | 214 | 359 | 1.22e-54 | 190 |
| MS.gene99483.t1 | AT3G24290 | 27.155 | 464 | 263 | 15 | 24 | 451 | 46 | 470 | 1.13e-21 | 99.4 |
| MS.gene99483.t1 | AT1G64780 | 26.144 | 459 | 279 | 12 | 24 | 452 | 52 | 480 | 2.44e-21 | 98.2 |
| MS.gene99483.t1 | AT4G13510 | 25.625 | 480 | 277 | 14 | 24 | 464 | 42 | 480 | 2.81e-21 | 98.2 |
| MS.gene99483.t1 | AT3G24300 | 24.948 | 481 | 285 | 13 | 24 | 467 | 46 | 487 | 3.16e-21 | 97.8 |
| MS.gene99483.t1 | AT4G28700 | 25.820 | 488 | 292 | 14 | 24 | 475 | 51 | 504 | 1.18e-19 | 93.2 |
Find 176 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGTGATTGGAGCTGTTC+AGG | 0.196275 | 7.1:+32500719 | MS.gene99483:CDS |
| TATGTTATTCATCTTTCTTC+TGG | 0.220707 | 7.1:+32499403 | MS.gene99483:CDS |
| CTGGTTTCACTGCTGCTTAT+TGG | 0.234954 | 7.1:+32499431 | MS.gene99483:CDS |
| TTGTTGGCTGGTTCTGTTCT+TGG | 0.237579 | 7.1:+32499250 | MS.gene99483:CDS |
| TGGGGTGTTATTGATTATTC+TGG | 0.250620 | 7.1:+32499376 | MS.gene99483:CDS |
| ACATGCTGTGGCTGGCCTAT+TGG | 0.253905 | 7.1:+32503434 | MS.gene99483:CDS |
| ACATGCTGTGGCTGGCCTAT+TGG | 0.253905 | 7.1:+32507004 | MS.gene99483:CDS |
| CATGCTGTGGCTGGCCTATT+GGG | 0.258730 | 7.1:+32503435 | MS.gene99483:CDS |
| CATGCTGTGGCTGGCCTATT+GGG | 0.258730 | 7.1:+32507005 | MS.gene99483:CDS |
| CGAGGAGGCTTATGCCCTTT+GGG | 0.265996 | 7.1:+32503704 | MS.gene99483:CDS |
| GGAGGAAGCTTATGCCCTTT+GGG | 0.268571 | 7.1:+32507274 | MS.gene99483:CDS |
| GTGGTGGATTTCTTTATCAT+TGG | 0.270317 | 7.1:+32499356 | MS.gene99483:CDS |
| CATCTTTCTTCTGGAATTGC+TGG | 0.270523 | 7.1:+32499412 | MS.gene99483:CDS |
| GGTAAAGGTGCACCAGCTTT+AGG | 0.272696 | 7.1:+32499076 | MS.gene99483:CDS |
| TTTGGGAAGCCTTCTGTGAT+TGG | 0.274978 | 7.1:+32500708 | MS.gene99483:CDS |
| TGGTTTCACTGCTGCTTATT+GGG | 0.280966 | 7.1:+32499432 | MS.gene99483:CDS |
| GTGGCAGCAATGTTTGTTAT+TGG | 0.287336 | 7.1:+32503576 | MS.gene99483:CDS |
| GTGGCAGCAATGTTTGTTAT+TGG | 0.287336 | 7.1:+32507146 | MS.gene99483:CDS |
| TTGTTATGGATGGGTTGGTC+AGG | 0.288183 | 7.1:+32500570 | MS.gene99483:CDS |
| TGGTGGATTTCTTTATCATT+GGG | 0.295425 | 7.1:+32499357 | MS.gene99483:CDS |
| GGGAGGAAGCTTATGCCCTT+TGG | 0.303955 | 7.1:+32507273 | MS.gene99483:CDS |
| TTGCTGATGCTTGCAGGTGC+TGG | 0.322741 | 7.1:+32500546 | MS.gene99483:CDS |
| GCGAGGAGGCTTATGCCCTT+TGG | 0.327798 | 7.1:+32503703 | MS.gene99483:CDS |
| GGCAGTGAATTCAGCTTTCA+TGG | 0.342800 | 7.1:+32498967 | MS.gene99483:CDS |
| GTTGCTTATAGAATGGCTTT+TGG | 0.349898 | 7.1:+32499031 | MS.gene99483:CDS |
| TCCCTATCACTCTTTATCCT+TGG | 0.350780 | 7.1:-32500501 | None:intergenic |
| AATTCAAGGGGTGCATTCTA+TGG | 0.355468 | 7.1:+32503519 | MS.gene99483:CDS |
| AATTCAAGGGGTGCATTCTA+TGG | 0.355468 | 7.1:+32507089 | MS.gene99483:CDS |
| GGTTCTTGTTGCTTATAGAA+TGG | 0.366948 | 7.1:+32499024 | MS.gene99483:CDS |
| GTAAAGGTGCACCAGCTTTA+GGG | 0.372536 | 7.1:+32499077 | MS.gene99483:CDS |
| CCCGACGAGCAGCTCGAAAT+CGG | 0.373882 | 7.1:+32503663 | MS.gene99483:CDS |
| AGCATCAGCAACACATTGTT+TGG | 0.375545 | 7.1:-32500534 | None:intergenic |
| TTCTATCTGGGAGCATTCCT+TGG | 0.377365 | 7.1:+32501776 | MS.gene99483:CDS |
| GCTTATGCCCTTTGGGGTGA+TGG | 0.380121 | 7.1:+32503711 | MS.gene99483:CDS |
| GGAGTGTCACCTTATGTTAA+TGG | 0.386336 | 7.1:+32503783 | MS.gene99483:CDS |
| GGAGTGTCACCTTATGTTAA+TGG | 0.386336 | 7.1:+32507353 | MS.gene99483:CDS |
| CCAATTCCTAAAACAATTAG+TGG | 0.393680 | 7.1:+32503557 | MS.gene99483:CDS |
| CCAATTCCTAAAACAATTAG+TGG | 0.393680 | 7.1:+32507127 | MS.gene99483:CDS |
| TTGTAATAGTGAGTACTTGC+AGG | 0.400657 | 7.1:-32499130 | None:intergenic |
| TGGTGATGCTGCTGCTGCCA+TGG | 0.410499 | 7.1:-32498801 | None:intergenic |
| ATTGTGATGGGAATTCTATC+TGG | 0.411310 | 7.1:+32501763 | MS.gene99483:CDS |
| TCTGTGATTGGAGCTGTTCA+GGG | 0.412166 | 7.1:+32500720 | MS.gene99483:CDS |
| CCGATTTCGAGCTGCTCGTC+AGG | 0.414341 | 7.1:-32507233 | None:intergenic |
| AATGTGTTGCTGATGCTTGC+AGG | 0.420148 | 7.1:+32500540 | MS.gene99483:CDS |
| CCTGACGAGCAGCTCGAAAT+CGG | 0.420213 | 7.1:+32507233 | MS.gene99483:CDS |
| CTATTGGGTGGCCTACTAAC+AGG | 0.422381 | 7.1:+32503450 | MS.gene99483:CDS |
| CTATTGGGTGGCCTACTAAC+AGG | 0.422381 | 7.1:+32507020 | MS.gene99483:CDS |
| GCTTATGCCCTTTGGGGTGA+TGG | 0.427166 | 7.1:+32507281 | MS.gene99483:CDS |
| CTGACGAGCAGCTCGAAATC+GGG | 0.432110 | 7.1:+32507234 | MS.gene99483:CDS |
| GACCAAGGATAAAGAGTGAT+AGG | 0.433065 | 7.1:+32500499 | MS.gene99483:CDS |
| CCGACGAGCAGCTCGAAATC+GGG | 0.434200 | 7.1:+32503664 | MS.gene99483:CDS |
| ATGCATATATTACCTGCTCC+TGG | 0.434228 | 7.1:-32500771 | None:intergenic |
| CCGATTTCGAGCTGCTCGTC+GGG | 0.435083 | 7.1:-32503663 | None:intergenic |
| TCGGGGACGATGCGGCTCAC+GGG | 0.436687 | 7.1:+32507252 | MS.gene99483:CDS |
| TGCATATATTACCTGCTCCT+GGG | 0.440089 | 7.1:-32500770 | None:intergenic |
| TTGCAGGTGCTGGATTGTTA+TGG | 0.443343 | 7.1:+32500556 | MS.gene99483:CDS |
| GTGATGTTGGAAGATGTTCT+TGG | 0.444031 | 7.1:-32498829 | None:intergenic |
| AGGCATGGTTCGTTGAATAC+TGG | 0.453886 | 7.1:+32503753 | MS.gene99483:CDS |
| AGGCATGGTTCGTTGAATAC+TGG | 0.453886 | 7.1:+32507323 | MS.gene99483:CDS |
| GTGAGTACTTGCAGGTACTT+TGG | 0.455661 | 7.1:-32499122 | None:intergenic |
| TGTTATGGATGGGTTGGTCA+GGG | 0.456410 | 7.1:+32500571 | MS.gene99483:CDS |
| AAAGTCAAGTCTTCTACAAA+AGG | 0.456657 | 7.1:+32501822 | MS.gene99483:CDS |
| CGGGGACGATGCGGCTCACG+GGG | 0.457266 | 7.1:+32507253 | MS.gene99483:CDS |
| CTGGATTGTTATGGATGGGT+TGG | 0.463522 | 7.1:+32500565 | MS.gene99483:CDS |
| TTAAAGGTTGATGACACTCT+TGG | 0.465575 | 7.1:+32503399 | MS.gene99483:intron |
| TGGCTGGTTCTGTTCTTGGA+AGG | 0.468383 | 7.1:+32499254 | MS.gene99483:CDS |
| TCTCCTTTGTTTAACCATGC+TGG | 0.471106 | 7.1:-32498851 | None:intergenic |
| CTGGTAATAGTAATCTACAT+AGG | 0.472192 | 7.1:-32503491 | None:intergenic |
| CTGGTAATAGTAATCTACAT+AGG | 0.472192 | 7.1:-32507061 | None:intergenic |
| GATGAATATTAAAGCTTGGA+TGG | 0.480445 | 7.1:+32499276 | MS.gene99483:CDS |
| CTGCTCGTCGGGCATCCTCA+AGG | 0.482168 | 7.1:-32503652 | None:intergenic |
| CTGCAAGGAGTCCTGTTAGT+AGG | 0.485260 | 7.1:-32503461 | None:intergenic |
| CTGCAAGGAGTCCTGTTAGT+AGG | 0.485260 | 7.1:-32507031 | None:intergenic |
| CCCGATTTCGAGCTGCTCGT+CGG | 0.486146 | 7.1:-32503664 | None:intergenic |
| ATCGGGGACGATGCGGCTCA+CGG | 0.488755 | 7.1:+32507251 | MS.gene99483:CDS |
| GAAGGATGAATATTAAAGCT+TGG | 0.489811 | 7.1:+32499272 | MS.gene99483:CDS |
| GGAAGATGTTCTTGGTATGC+TGG | 0.493678 | 7.1:-32498821 | None:intergenic |
| AGGTGCTGGATTGTTATGGA+TGG | 0.496148 | 7.1:+32500560 | MS.gene99483:CDS |
| CTGTTAGTAGGCCACCCAAT+AGG | 0.508793 | 7.1:-32503449 | None:intergenic |
| CTGTTAGTAGGCCACCCAAT+AGG | 0.508793 | 7.1:-32507019 | None:intergenic |
| ATGGGTTGGTCAGGGTTCAA+TGG | 0.509849 | 7.1:+32500579 | MS.gene99483:CDS |
| GATGCAACATTTGCTGCATA+TGG | 0.511907 | 7.1:-32500609 | None:intergenic |
| GCATAGAGAATTACTAGTCC+TGG | 0.516086 | 7.1:-32498923 | None:intergenic |
| CAGCAATGTTTGTTATTGGA+TGG | 0.518720 | 7.1:+32503580 | MS.gene99483:CDS |
| CAGCAATGTTTGTTATTGGA+TGG | 0.518720 | 7.1:+32507150 | MS.gene99483:CDS |
| TATTACCAGTGACAAATTCA+AGG | 0.518978 | 7.1:+32503505 | MS.gene99483:CDS |
| TATTACCAGTGACAAATTCA+AGG | 0.518978 | 7.1:+32507075 | MS.gene99483:CDS |
| TTCAACGAACCATGCCTAGT+TGG | 0.519712 | 7.1:-32503747 | None:intergenic |
| TTCAACGAACCATGCCTAGT+TGG | 0.519712 | 7.1:-32507317 | None:intergenic |
| ATGTAGGGCTTGTGCAATCG+TGG | 0.521283 | 7.1:+32501734 | MS.gene99483:intron |
| TTTCACACACATGCTGTGGC+TGG | 0.523309 | 7.1:+32503426 | MS.gene99483:CDS |
| TTTCACACACATGCTGTGGC+TGG | 0.523309 | 7.1:+32506996 | MS.gene99483:CDS |
| GGACGATGCGGCCCACGGCG+AGG | 0.525172 | 7.1:+32503686 | MS.gene99483:CDS |
| GTATGTATCACCCCAGGAGC+AGG | 0.525866 | 7.1:+32500759 | MS.gene99483:CDS |
| GTTGGTCTACAAAGCATGCC+AGG | 0.526287 | 7.1:+32498905 | MS.gene99483:CDS |
| GGTGCATTCTATGGTGGAAG+TGG | 0.527159 | 7.1:+32503528 | MS.gene99483:CDS |
| GGTGCATTCTATGGTGGAAG+TGG | 0.527159 | 7.1:+32507098 | MS.gene99483:CDS |
| CCTCTTGCACCATTAACATA+AGG | 0.528402 | 7.1:-32503792 | None:intergenic |
| CCTCTTGCACCATTAACATA+AGG | 0.528402 | 7.1:-32507362 | None:intergenic |
| GGTTGGTCAGGGTTCAATGG+TGG | 0.529011 | 7.1:+32500582 | MS.gene99483:CDS |
| GCATTCTATGGTGGAAGTGG+TGG | 0.530052 | 7.1:+32503531 | MS.gene99483:CDS |
| GCATTCTATGGTGGAAGTGG+TGG | 0.530052 | 7.1:+32507101 | MS.gene99483:CDS |
| TTTAACCATGCTGGTGATGT+TGG | 0.533861 | 7.1:-32498842 | None:intergenic |
| GGCATAAGCCTCCTCGCCGT+GGG | 0.533986 | 7.1:-32503697 | None:intergenic |
| ATCGGGGACGATGCGGCCCA+CGG | 0.537452 | 7.1:+32503681 | MS.gene99483:CDS |
| ATGACAGCAGCAACACTAGT+TGG | 0.538801 | 7.1:+32498887 | MS.gene99483:CDS |
| GCACCCCTTGAATTTGTCAC+TGG | 0.539379 | 7.1:-32503510 | None:intergenic |
| GCACCCCTTGAATTTGTCAC+TGG | 0.539379 | 7.1:-32507080 | None:intergenic |
| GAGGAAGCTTATGCCCTTTG+GGG | 0.539536 | 7.1:+32507275 | MS.gene99483:CDS |
| AATAGTAATCTACATAGGGC+TGG | 0.541637 | 7.1:-32503486 | None:intergenic |
| AATAGTAATCTACATAGGGC+TGG | 0.541637 | 7.1:-32507056 | None:intergenic |
| GCTGTTCAGGGTATGATGAC+TGG | 0.543025 | 7.1:+32500732 | MS.gene99483:CDS |
| ATTACCAGTGACAAATTCAA+GGG | 0.543496 | 7.1:+32503506 | MS.gene99483:CDS |
| ATTACCAGTGACAAATTCAA+GGG | 0.543496 | 7.1:+32507076 | MS.gene99483:CDS |
| GGTGTTATTGATTATTCTGG+TGG | 0.544017 | 7.1:+32499379 | MS.gene99483:CDS |
| TTGTGATGGGAATTCTATCT+GGG | 0.549743 | 7.1:+32501764 | MS.gene99483:CDS |
| ATCGTGGGCGGCTATTGTGA+TGG | 0.560238 | 7.1:+32501750 | MS.gene99483:CDS |
| GGTGGATTTCTTTATCATTG+GGG | 0.564219 | 7.1:+32499358 | MS.gene99483:CDS |
| CGATGCGGCCCACGGCGAGG+AGG | 0.564710 | 7.1:+32503689 | MS.gene99483:CDS |
| TGGTAATAGTAATCTACATA+GGG | 0.566028 | 7.1:-32503490 | None:intergenic |
| TGGTAATAGTAATCTACATA+GGG | 0.566028 | 7.1:-32507060 | None:intergenic |
| TCGTGGGCGGCTATTGTGAT+GGG | 0.566243 | 7.1:+32501751 | MS.gene99483:CDS |
| GAGGAGGCTTATGCCCTTTG+GGG | 0.566272 | 7.1:+32503705 | MS.gene99483:CDS |
| TGCTCGTCGGGCATCCTCAA+GGG | 0.567146 | 7.1:-32503651 | None:intergenic |
| TTAAAGGTTGATGACACTCA+TGG | 0.576556 | 7.1:+32506969 | MS.gene99483:intron |
| GGATAAAGAGTGATAGGGAA+AGG | 0.577138 | 7.1:+32500505 | MS.gene99483:CDS |
| ATCAGCAACACATTGTTTGG+TGG | 0.581081 | 7.1:-32500531 | None:intergenic |
| TACATAGGGCTGGCTCTGCA+AGG | 0.581821 | 7.1:-32503476 | None:intergenic |
| TACATAGGGCTGGCTCTGCA+AGG | 0.581821 | 7.1:-32507046 | None:intergenic |
| AAATATGATCCAACTAGGCA+TGG | 0.582321 | 7.1:+32503738 | MS.gene99483:CDS |
| AAATATGATCCAACTAGGCA+TGG | 0.582321 | 7.1:+32507308 | MS.gene99483:CDS |
| CCTTATGTTAATGGTGCAAG+AGG | 0.587708 | 7.1:+32503792 | MS.gene99483:CDS |
| CCTTATGTTAATGGTGCAAG+AGG | 0.587708 | 7.1:+32507362 | MS.gene99483:CDS |
| ACCAAGGATAAAGAGTGATA+GGG | 0.587771 | 7.1:+32500500 | MS.gene99483:CDS |
| GGGCATAAGCCTCCTCGCCG+TGG | 0.588211 | 7.1:-32503698 | None:intergenic |
| CAGCAACTAGTCTTCTTGTG+TGG | 0.591340 | 7.1:+32500664 | MS.gene99483:CDS |
| TGTAGGGCTTGTGCAATCGT+GGG | 0.592002 | 7.1:+32501735 | MS.gene99483:intron |
| CTGCTCGTCAGGCATCCTCA+AGG | 0.593904 | 7.1:-32507222 | None:intergenic |
| GGTGCTGGATTGTTATGGAT+GGG | 0.594178 | 7.1:+32500561 | MS.gene99483:CDS |
| AAATAAACAAGTGAAGCCAT+AGG | 0.597753 | 7.1:-32499196 | None:intergenic |
| TATAACAAGGAGAATGATTG+TGG | 0.603882 | 7.1:-32503616 | None:intergenic |
| TATAACAAGGAGAATGATTG+TGG | 0.603882 | 7.1:-32507186 | None:intergenic |
| GCTGTGGCTGGCCTATTGGG+TGG | 0.604590 | 7.1:+32503438 | MS.gene99483:CDS |
| GCTGTGGCTGGCCTATTGGG+TGG | 0.604590 | 7.1:+32507008 | MS.gene99483:CDS |
| GGACGATGCGGCTCACGGGG+AGG | 0.610613 | 7.1:+32507256 | MS.gene99483:CDS |
| TGCTCGTCAGGCATCCTCAA+GGG | 0.613907 | 7.1:-32507221 | None:intergenic |
| TCGTTGAATACTGGTAACAC+TGG | 0.616643 | 7.1:+32503762 | MS.gene99483:CDS |
| TCGTTGAATACTGGTAACAC+TGG | 0.616643 | 7.1:+32507332 | MS.gene99483:CDS |
| GGTGCACCTTTACCCCAGAA+AGG | 0.618916 | 7.1:-32499067 | None:intergenic |
| GCATATATTACCTGCTCCTG+GGG | 0.620373 | 7.1:-32500769 | None:intergenic |
| TGAACAGCTCCAATCACAGA+AGG | 0.622407 | 7.1:-32500717 | None:intergenic |
| ATCTTCCAACATCACCAGCA+TGG | 0.627882 | 7.1:+32498837 | MS.gene99483:CDS |
| TCAAGGGGTGCATTCTATGG+TGG | 0.628215 | 7.1:+32503522 | MS.gene99483:CDS |
| TCAAGGGGTGCATTCTATGG+TGG | 0.628215 | 7.1:+32507092 | MS.gene99483:CDS |
| TGACGAGCAGCTCGAAATCG+GGG | 0.633869 | 7.1:+32507235 | MS.gene99483:CDS |
| GTATGAATAGTTGTATAACA+AGG | 0.633966 | 7.1:-32503629 | None:intergenic |
| GTATGAATAGTTGTATAACA+AGG | 0.633966 | 7.1:-32507199 | None:intergenic |
| AACAAGGAGAATGATTGTGG+TGG | 0.634525 | 7.1:-32503613 | None:intergenic |
| AACAAGGAGAATGATTGTGG+TGG | 0.634525 | 7.1:-32507183 | None:intergenic |
| CGACGAGCAGCTCGAAATCG+GGG | 0.635852 | 7.1:+32503665 | MS.gene99483:CDS |
| TGATGTTGTTGAAACACCAA+TGG | 0.638088 | 7.1:+32499159 | MS.gene99483:CDS |
| GGACTTGTATGTATCACCCC+AGG | 0.638350 | 7.1:+32500753 | MS.gene99483:CDS |
| AAAGAAAACAACATCAAGAG+AGG | 0.638741 | 7.1:-32500688 | None:intergenic |
| GCTCGAAATCGGGGACGATG+CGG | 0.642035 | 7.1:+32503674 | MS.gene99483:CDS |
| GCTCGAAATCGGGGACGATG+CGG | 0.643288 | 7.1:+32507244 | MS.gene99483:CDS |
| AGGGCTTGTGCAATCGTGGG+CGG | 0.644338 | 7.1:+32501738 | MS.gene99483:intron |
| TACAACTATTCATACCCTTG+AGG | 0.649090 | 7.1:+32503637 | MS.gene99483:CDS |
| TACAACTATTCATACCCTTG+AGG | 0.649090 | 7.1:+32507207 | MS.gene99483:CDS |
| TAAACAAAGGAGACAACGCA+TGG | 0.662925 | 7.1:+32498861 | MS.gene99483:CDS |
| TCACCAGCATGGTTAAACAA+AGG | 0.678074 | 7.1:+32498848 | MS.gene99483:CDS |
| AAGATCATCATGGAGAACCA+AGG | 0.681910 | 7.1:-32501793 | None:intergenic |
| ATTATGTGTAGGTTGGACCA+AGG | 0.692031 | 7.1:+32500484 | MS.gene99483:intron |
| AGTATTTCACACACATGCTG+TGG | 0.697237 | 7.1:+32503422 | MS.gene99483:CDS |
| TTACCAGTGACAAATTCAAG+GGG | 0.721655 | 7.1:+32503507 | MS.gene99483:CDS |
| TTACCAGTGACAAATTCAAG+GGG | 0.721655 | 7.1:+32507077 | MS.gene99483:CDS |
| AGTATTTCACACACATGCTG+TGG | 0.745358 | 7.1:+32506992 | MS.gene99483:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32498803 | 32507403 | 32498803 | ID=MS.gene99483 |
| chr7.1 | mRNA | 32498803 | 32507403 | 32498803 | ID=MS.gene99483.t1;Parent=MS.gene99483 |
| chr7.1 | exon | 32498803 | 32499453 | 32498803 | ID=MS.gene99483.t1.exon1;Parent=MS.gene99483.t1 |
| chr7.1 | CDS | 32498803 | 32499453 | 32498803 | ID=cds.MS.gene99483.t1;Parent=MS.gene99483.t1 |
| chr7.1 | exon | 32500495 | 32500780 | 32500495 | ID=MS.gene99483.t1.exon2;Parent=MS.gene99483.t1 |
| chr7.1 | CDS | 32500495 | 32500780 | 32500495 | ID=cds.MS.gene99483.t1;Parent=MS.gene99483.t1 |
| chr7.1 | exon | 32501740 | 32501843 | 32501740 | ID=MS.gene99483.t1.exon3;Parent=MS.gene99483.t1 |
| chr7.1 | CDS | 32501740 | 32501843 | 32501740 | ID=cds.MS.gene99483.t1;Parent=MS.gene99483.t1 |
| chr7.1 | exon | 32503405 | 32503815 | 32503405 | ID=MS.gene99483.t1.exon4;Parent=MS.gene99483.t1 |
| chr7.1 | CDS | 32503405 | 32503815 | 32503405 | ID=cds.MS.gene99483.t1;Parent=MS.gene99483.t1 |
| chr7.1 | exon | 32506975 | 32507403 | 32506975 | ID=MS.gene99483.t1.exon5;Parent=MS.gene99483.t1 |
| chr7.1 | CDS | 32506975 | 32507403 | 32506975 | ID=cds.MS.gene99483.t1;Parent=MS.gene99483.t1 |
| Gene Sequence |
| Protein sequence |
