AlfalfaGEDB | MS.gene29920

M. sativa cultivar XinJiangDaYe / MS.gene29920

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00917.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29920.t1	GAU17568.1	64.1	334	105	5	1	330	404	726	4.60E-107	397.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29920.t1	Q9FPT1	46.2	130	67	3	10	138	56	183	6.7e-22	106.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29920.t1	A0A392MFG0	65.3	334	101	5	1	330	4	326	5.0e-111	410.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049254	MS.gene29920	0.825002	5.94E-54	-1.69E-46
MS.gene049350	MS.gene29920	0.820442	6.85E-53	-1.69E-46
MS.gene049404	MS.gene29920	0.812762	3.60E-51	-1.69E-46
MS.gene049807	MS.gene29920	0.828112	1.08E-54	-1.69E-46
MS.gene049808	MS.gene29920	0.807597	4.68E-50	-1.69E-46
MS.gene050237	MS.gene29920	0.83215	1.11E-55	-1.69E-46
MS.gene050273	MS.gene29920	0.804329	2.28E-49	-1.69E-46
MS.gene050414	MS.gene29920	0.814331	1.63E-51	-1.69E-46
MS.gene050559	MS.gene29920	0.840068	1.09E-57	-1.69E-46
MS.gene050561	MS.gene29920	0.832851	7.47E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene038323	MS.gene29920	PPI
MS.gene038336	MS.gene29920	PPI
MS.gene29920	MS.gene057066	PPI
MS.gene29920	MS.gene038327	PPI
MS.gene29920	MS.gene057069	PPI
MS.gene29920	MS.gene017099	PPI
MS.gene29920	MS.gene030037	PPI
MS.gene29920	MS.gene057090	PPI
MS.gene29920	MS.gene038300	PPI
MS.gene29920	MS.gene057070	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29920.t1	MTR_7g107200	45.867	375	157	6	1	329	1	375	4.60e-108	320
MS.gene29920.t1	MTR_1g042160	49.701	334	136	8	1	328	1	308	2.54e-100	298
MS.gene29920.t1	MTR_7g107160	53.687	339	118	12	9	330	129	445	1.45e-99	301
MS.gene29920.t1	MTR_7g107160	49.612	129	45	3	66	174	1	129	7.43e-31	121
MS.gene29920.t1	MTR_8g011730	37.079	356	174	11	9	329	13	353	5.16e-63	204
MS.gene29920.t1	MTR_7g107170	54.037	161	66	1	168	328	111	263	2.14e-49	166
MS.gene29920.t1	MTR_7g107170	73.563	87	23	0	233	319	1	87	8.71e-33	122
MS.gene29920.t1	MTR_2g034780	36.747	166	102	1	158	323	99	261	4.68e-29	113
MS.gene29920.t1	MTR_3g079840	40.845	142	78	4	1	138	44	183	5.03e-26	109
MS.gene29920.t1	MTR_3g079840	40.845	142	78	4	1	138	45	184	5.22e-26	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29920.t1	AT5G06600	44.366	142	73	4	1	138	44	183	9.98e-27	111
MS.gene29920.t1	AT5G06600	44.366	142	73	4	1	138	43	182	1.05e-26	111
MS.gene29920.t1	AT5G06600	44.366	142	73	4	1	138	44	183	1.17e-26	111
MS.gene29920.t1	AT3G11910	44.615	130	69	3	10	138	55	182	2.69e-25	107
MS.gene29920.t1	AT3G11910	44.615	130	69	3	10	138	55	182	2.69e-25	107
MS.gene29920.t1	AT3G11910	44.615	130	69	3	10	138	54	181	2.75e-25	107
MS.gene29920.t1	AT3G11910	44.615	130	69	3	10	138	54	181	2.75e-25	107
MS.gene29920.t1	AT3G58340	25.517	290	168	9	5	268	3	270	2.81e-16	78.6
MS.gene29920.t1	AT3G58340	24.667	300	168	9	5	268	3	280	2.50e-15	76.3
MS.gene29920.t1	AT3G58220	25.822	213	140	6	11	218	13	212	9.84e-15	74.3

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Find 62 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCGCAGGTTTAGGGAA+TGG	0.505546	8.1:-49675344	MS.gene29920:CDS
AACTCGCAGGTTTAGGGAAT+GGG	0.389237	8.1:-49675343	MS.gene29920:CDS
AATGCAAGTAAGGATTATTT+GGG	0.389997	8.1:-49675666	MS.gene29920:CDS
ACTTTGGATTTCAAGGGTGT+AGG	0.575922	8.1:-49675447	MS.gene29920:CDS
AGAAGGCCAACGCCAAAATG+TGG	0.623253	8.1:-49675475	MS.gene29920:CDS
AGCTTCTTGATCCTGAAAGA+GGG	0.537917	8.1:-49675620	MS.gene29920:CDS
AGTAAGGATTATTTGGGTTT+CGG	0.339740	8.1:-49675660	MS.gene29920:CDS
ATAAAGAACTCTGCCCAAAG+CGG	0.731605	8.1:+49675314	None:intergenic
ATGATTTGTCTGTATCAATG+GGG	0.692803	8.1:-49676780	MS.gene29920:CDS
ATGGATTTGGATGCTGAACT+AGG	0.469976	8.1:-49675000	MS.gene29920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATAGTTTCGTATCATATG+AGG	+	chr8.1:49675132-49675151	None:intergenic	30.0%
CAATGCAAGTAAGGATTATT+TGG	-	chr8.1:49676296-49676315	MS.gene29920:intron	30.0%
CAGTTATTTGGAGAAATTGA+AGG	-	chr8.1:49676809-49676828	MS.gene29920:intron	30.0%
GAATCTTCAAAAAATTTGGG+AGG	-	chr8.1:49676719-49676738	MS.gene29920:CDS	30.0%
GTATTTGTTCTATGTTGCAA+AGG	+	chr8.1:49675994-49676013	None:intergenic	30.0%
TAAACAAACAGCAAAAGAGA+CGG	+	chr8.1:49676158-49676177	None:intergenic	30.0%
TACACTGCTAATATGTTTCA+GGG	-	chr8.1:49675249-49675268	MS.gene29920:CDS	30.0%
TCTCTCACTTGAATAAGATT+AGG	-	chr8.1:49675036-49675055	MS.gene29920:CDS	30.0%
TTATTTGGAGAAATTGAAGG+AGG	-	chr8.1:49676812-49676831	MS.gene29920:intron	30.0%
TTCCCAATATTAGAAAGAGT+TGG	-	chr8.1:49675600-49675619	MS.gene29920:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	49674984	49677001	49674984	ID=MS.gene29920
chr8.1	mRNA	49674984	49677001	49674984	ID=MS.gene29920.t1;Parent=MS.gene29920
chr8.1	exon	49676886	49677001	49676886	ID=MS.gene29920.t1.exon1;Parent=MS.gene29920.t1
chr8.1	CDS	49676886	49677001	49676886	ID=cds.MS.gene29920.t1;Parent=MS.gene29920.t1
chr8.1	exon	49676643	49676803	49676643	ID=MS.gene29920.t1.exon2;Parent=MS.gene29920.t1
chr8.1	CDS	49676643	49676803	49676643	ID=cds.MS.gene29920.t1;Parent=MS.gene29920.t1
chr8.1	exon	49674984	49675705	49674984	ID=MS.gene29920.t1.exon3;Parent=MS.gene29920.t1
chr8.1	CDS	49674984	49675705	49674984	ID=cds.MS.gene29920.t1;Parent=MS.gene29920.t1

Gene Sequence

>MS.gene29920

ATGGAGAGTCAAGAATCGAGCGATGAGAAGTTCACATGGAAGATTGAGAACTTCTCTCACTTGAATAAGATTAGGAATATATACTCTGAGCCTTTCATCCTTGGCGGCTATCCATGGTATGATATTTGAATGAATGAATGAATTTCCTCATATGATACGAAACTATTGTTTACATTTTGTGTTTTGACTTTGCTTTAGGATGATTTGTCTGTATCAATGGGGGACAGGAGTAGAAGACTACTTATCAATTTATTTGTATGTTGTGTACACTGCTAATATGTTTCAGGGATGGAGCAGAGATGTCAAACTTAAGTTGCTTGTATTCAATCAAGTTGATGCCAGCAAGACACTTACAAAAGGTTTTATTTTTTCTTCTTCTCTACATGTTTTGAATATTAGAGTACAACTAGGCTAAGTTATTTTAGATTAGTCGGTCACTATTTACTATGAGTCACAGTAAGATTGCAGGTTCAGTGATCTACAAGTATTTCTTGTTCGCATTGAGAGCCCTGAGTCTTGATTTTTGACCTAGTGAACTCTGAACCTAAACTTATTTTAACCAAATAACCAAAAAAAGTTATAAAATTAAAATATTATTTGAAAGATTTTTTTTTCTTTCCCAATATTAGAAAGAGTTGGAAACTCTTAGTTCACTGTCTCTTGTTTCAAGATTAATTAATCTTTGACTTTAACTATACCTCTGAAGCATGGGTTGTAAAACGGTGAAGTACATGTACCGGGTACACACCCGTACTGGGTACGCGTACGGTACTTGTGGCACTCCATTTTTGCTCATTATTGTATTGTGCGTGAAATTTGTGGCTTTCTCATACATCAATATGATAATACAATGTTATTTGTGCATTTGAGTTTCTTTGTTGTTGTAACCAACTCTAAATTCCGACTTTTTAAACTTCTAATGTGATTTTTTTGTTGAGAATTGAAGAATTTAACTTTTTCATGTTATATTCTATAACAAAACTTATCATTTTATTGACGTACTTGTACCTTTGCAACATAGAACAAATACAAATCAATTCAAGATCAATCTCTTTTTATTTTTCAGTCTCAAGGTTCAACACATTTTTTTCTCAACTTTTTCACCATGTTTTGCGCTCAACAAAATCATAAAGGAAAAATAAGAATTTGGATGAATAAAAAGTTTTCCAATCCGTCTCTTTTGCTGTTTGTTTAGAGAATAATATTGACTGAAATTTTGTTTGTTAGTAATTTCATAGAGTTGGTGCTTTCATTCTTCCAACTAAATTGACACTTCTTGATACCTGAATTTTCCAGAATCTAACTTTGAGTTCAATGCAAGTAAGGATTATTTGGGTTTCGGATTCATGACGTTATCTGAGCTTCTTGATCCTGAAAGAGGGTTTATTGTGAAGGATGCTTGTATTGTTGGTGTTGAAGTTTATGTTTGTAAATCAACACATGAGAAAGCAATCATTCAACCAGCTAACTTAACTGCTTCAACAAGGCCAGAGCCAGAACTAGAAGAAGGCCAACGCCAAAATGTGGTCGAGACTTTGGATTTCAAGGGTGTAGGACAAATAGAGAAGGCCTTTATTCCATTACTAGAGGAAGTATGTTCTCAACACCCTTCGCTTATTTTGTGTCAGGAGAAAAAAACTCGCAGGTTTAGGGAATGGGCGTTCACCGCTTTGGGCAGAGTTCTTTATTTCCTTAAGACAAGAAAGGTGAGAGATATGAATGACTTAGCTTGTAAGAATCTTCAAAAAATTTGGGAGGAACTTCAACCATTTAATTTCAATTTGACTTGGTTAGAGCCTTGTGTTCAATCTGCTTTGGAAAAGAACAGTTATTTGGAGAAATTGAAGGAGGCGGAAAAACTAAGGGATAATGTGGTAGCTCTAGAGTTAGAATTGGAAAGGCTAATGGCAAAGACTGCTACTGTAGAGATAAATCTTGATGCAGCAAGAGACTTGTTGGAGGCAGAAGATTTTGAAGAGATGGATTTGGATGCTGAACTAGGATTTGTGAACACATAA

Protein sequence

>MS.gene29920.t1

MESQESSDEKFTWKIENFSHLNKIRNIYSEPFILGGYPWMICLYQWGTGVEDYLSIYLYVVYTANMFQGWSRDVKLKLLVFNQVDASKTLTKESNFEFNASKDYLGFGFMTLSELLDPERGFIVKDACIVGVEVYVCKSTHEKAIIQPANLTASTRPEPELEEGQRQNVVETLDFKGVGQIEKAFIPLLEEVCSQHPSLILCQEKKTRRFREWAFTALGRVLYFLKTRKVRDMNDLACKNLQKIWEELQPFNFNLTWLEPCVQSALEKNSYLEKLKEAEKLRDNVVALELELERLMAKTATVEINLDAARDLLEAEDFEEMDLDAELGFVNT