AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87673


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87673.t1 MTR_7g074020 98.052 154 3 0 1 154 1 154 8.34e-109 306
MS.gene87673.t1 MTR_7g074020 98.013 151 3 0 1 151 1 151 1.07e-105 299
MS.gene87673.t1 MTR_6g007613 92.308 156 12 0 3 158 2 157 1.07e-105 299
MS.gene87673.t1 MTR_6g007613 92.617 149 11 0 3 151 2 150 1.03e-98 281
MS.gene87673.t1 MTR_5g088320 46.457 127 68 0 22 148 4 130 6.72e-35 119
MS.gene87673.t1 MTR_5g088320 46.970 66 35 0 29 94 84 149 1.87e-12 61.6
MS.gene87673.t1 MTR_7g087610 46.457 127 68 0 22 148 4 130 1.00e-34 119
MS.gene87673.t1 MTR_7g087610 48.485 66 34 0 29 94 84 149 4.11e-13 63.2
MS.gene87673.t1 MTR_6g025320 46.457 127 68 0 22 148 4 130 1.35e-34 118
MS.gene87673.t1 MTR_6g025320 46.970 66 35 0 29 94 84 149 1.83e-12 61.6
MS.gene87673.t1 MTR_1g076650 42.308 130 75 0 21 150 3 132 3.94e-33 115
MS.gene87673.t1 MTR_1g076650 47.619 63 33 0 29 91 84 146 8.77e-13 62.4
MS.gene87673.t1 MTR_1g041285 44.444 126 70 0 23 148 5 130 3.93e-31 109
MS.gene87673.t1 MTR_1g041285 44.444 63 35 0 29 91 84 146 3.27e-11 58.2
MS.gene87673.t1 MTR_1g071150 36.496 137 86 1 21 157 3 138 5.32e-24 91.7
MS.gene87673.t1 MTR_1g071150 41.667 72 38 1 20 91 78 145 5.09e-11 57.8
MS.gene87673.t1 MTR_0168s0120 44.681 94 52 0 55 148 1 94 3.43e-23 88.6
MS.gene87673.t1 MTR_0168s0120 46.970 66 35 0 29 94 48 113 6.47e-13 62.0
MS.gene87673.t1 MTR_6g025320 44.681 94 52 0 55 148 1 94 3.43e-23 88.6
MS.gene87673.t1 MTR_6g025320 46.970 66 35 0 29 94 48 113 6.47e-13 62.0
MS.gene87673.t1 MTR_1g032070 36.000 125 80 0 26 150 42 166 3.62e-19 80.5
MS.gene87673.t1 MTR_1g032070 42.857 63 36 0 29 91 118 180 6.92e-11 58.5
MS.gene87673.t1 MTR_8g105230 33.884 121 80 0 30 150 36 156 1.75e-18 78.2
MS.gene87673.t1 MTR_8g105230 49.153 59 30 0 29 87 108 166 2.99e-13 64.7
MS.gene87673.t1 MTR_8g066630 31.387 137 91 1 15 148 2 138 7.12e-18 76.3
MS.gene87673.t1 MTR_3g067610 35.606 132 77 3 28 155 3 130 1.50e-17 74.7
MS.gene87673.t1 MTR_3g067610 38.961 77 47 0 16 92 60 136 2.70e-12 60.8
MS.gene87673.t1 MTR_4g067270 32.231 121 80 1 30 148 5 125 1.59e-17 74.7
MS.gene87673.t1 MTR_7g106710 33.077 130 84 2 22 151 432 558 1.76e-17 78.6
MS.gene87673.t1 MTR_7g106710 33.077 130 84 2 22 151 432 558 2.09e-17 78.6
MS.gene87673.t1 MTR_7g115040 36.508 126 80 0 23 148 5 130 2.68e-17 74.3
MS.gene87673.t1 MTR_1g055255 33.846 130 83 2 22 151 421 547 3.12e-17 78.2
MS.gene87673.t1 MTR_5g079340 33.613 119 78 1 30 148 4 121 1.63e-16 72.0
MS.gene87673.t1 MTR_7g075040 32.394 142 87 3 18 150 35 176 2.50e-16 72.8
MS.gene87673.t1 MTR_8g095440 34.884 129 81 2 23 151 328 453 2.50e-16 75.5
MS.gene87673.t1 MTR_5g011850 29.457 129 89 1 23 151 5 131 2.61e-16 71.6
MS.gene87673.t1 MTR_8g036075 34.109 129 77 3 30 150 49 177 4.23e-16 72.4
MS.gene87673.t1 MTR_3g098070 34.109 129 82 2 23 151 327 452 5.81e-16 74.3
MS.gene87673.t1 MTR_8g107110 32.231 121 81 1 30 150 24 143 8.53e-16 70.9
MS.gene87673.t1 MTR_8g107110 41.270 63 37 0 29 91 95 157 7.94e-11 57.8
MS.gene87673.t1 MTR_4g112460 30.894 123 83 2 30 150 11 133 1.88e-15 70.1
MS.gene87673.t1 MTR_3g098090 34.109 129 82 2 23 151 330 455 2.23e-15 72.8
MS.gene87673.t1 MTR_5g092810 35.821 134 76 4 22 151 389 516 3.19e-15 72.4
MS.gene87673.t1 MTR_8g099095 33.077 130 85 2 22 151 363 490 7.03e-15 71.2
MS.gene87673.t1 MTR_5g009830 31.783 129 86 2 23 151 364 490 1.10e-14 70.9
MS.gene87673.t1 MTR_0028s0170 33.858 127 80 3 23 148 376 499 1.84e-14 70.1
MS.gene87673.t1 MTR_8g078270 31.746 126 84 2 24 148 47 171 2.63e-14 67.4
MS.gene87673.t1 MTR_1g096490 30.233 129 87 2 23 151 328 453 4.65e-14 68.9
MS.gene87673.t1 MTR_6g079570 43.077 65 37 0 31 95 100 164 5.82e-14 66.2
MS.gene87673.t1 MTR_1g046950 30.579 121 82 1 30 148 4 124 6.70e-14 65.1
MS.gene87673.t1 MTR_1g046950 39.394 66 40 0 27 92 76 141 1.40e-11 59.3
MS.gene87673.t1 MTR_1g041150 31.008 129 86 2 23 151 416 541 7.07e-14 68.6
MS.gene87673.t1 MTR_8g069915 27.132 129 92 1 24 150 6 134 1.31e-13 65.1
MS.gene87673.t1 MTR_7g090450 30.075 133 88 3 23 150 66 198 1.45e-13 65.9
MS.gene87673.t1 MTR_7g090450 48.438 64 32 1 29 91 149 212 5.23e-11 58.9
MS.gene87673.t1 MTR_5g089320 32.283 127 82 3 23 148 366 489 1.58e-13 67.4
MS.gene87673.t1 MTR_3g051770 33.588 131 77 4 22 148 380 504 4.25e-13 66.2
MS.gene87673.t1 MTR_7g089760 34.951 103 67 0 30 132 5 107 5.68e-13 63.2
MS.gene87673.t1 MTR_4g107490 32.031 128 84 3 22 148 370 495 6.85e-13 65.5
MS.gene87673.t1 MTR_4g132070 32.061 131 85 3 22 151 388 515 9.26e-13 65.1
MS.gene87673.t1 MTR_1g026190 31.818 132 84 3 22 151 379 506 9.42e-13 65.1
MS.gene87673.t1 MTR_4g086260 28.889 135 94 1 14 148 41 173 3.52e-12 61.6
MS.gene87673.t1 MTR_3g083470 38.750 80 47 1 24 103 150 227 3.66e-12 62.4
MS.gene87673.t1 MTR_4g132040 36.441 118 71 3 31 147 401 515 5.04e-12 63.2
MS.gene87673.t1 MTR_5g017550 31.452 124 84 1 25 148 43 165 7.21e-12 60.8
MS.gene87673.t1 MTR_5g017510 32.031 128 83 3 25 150 43 168 1.57e-11 60.1
MS.gene87673.t1 MTR_5g017560 32.031 128 83 3 25 150 43 168 1.57e-11 60.1
MS.gene87673.t1 MTR_7g068710 31.818 110 74 1 23 132 354 462 4.43e-11 60.5
MS.gene87673.t1 MTR_1g047100 38.806 67 41 0 27 93 75 141 4.79e-11 57.8
MS.gene87673.t1 MTR_3g055520 31.008 129 74 1 23 151 45 158 8.03e-11 57.8
MS.gene87673.t1 MTR_1g054865 26.923 130 92 2 22 151 458 584 9.00e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87673.t1 AT3G50360 79.054 148 29 1 3 150 2 147 3.33e-76 224
MS.gene87673.t1 AT4G37010 65.441 136 46 1 16 150 16 151 6.03e-59 181
MS.gene87673.t1 AT4G37010 65.441 136 46 1 16 150 12 147 6.90e-59 181
MS.gene87673.t1 AT5G37780 46.457 127 68 0 22 148 4 130 2.35e-35 120
MS.gene87673.t1 AT5G37780 48.485 66 34 0 29 94 84 149 5.21e-13 63.2
MS.gene87673.t1 AT1G66410 46.457 127 68 0 22 148 4 130 2.35e-35 120
MS.gene87673.t1 AT1G66410 48.485 66 34 0 29 94 84 149 5.21e-13 63.2
MS.gene87673.t1 AT3G56800 46.457 127 68 0 22 148 4 130 1.01e-34 119
MS.gene87673.t1 AT3G56800 46.970 66 35 0 29 94 84 149 1.51e-12 62.0
MS.gene87673.t1 AT2G27030 46.457 127 68 0 22 148 4 130 1.01e-34 119
MS.gene87673.t1 AT2G27030 46.970 66 35 0 29 94 84 149 1.51e-12 62.0
MS.gene87673.t1 AT2G41110 46.457 127 68 0 22 148 4 130 1.01e-34 119
MS.gene87673.t1 AT2G41110 46.970 66 35 0 29 94 84 149 1.51e-12 62.0
MS.gene87673.t1 AT3G43810 46.457 127 68 0 22 148 4 130 1.41e-34 118
MS.gene87673.t1 AT3G43810 46.970 66 35 0 29 94 84 149 1.92e-12 61.6
MS.gene87673.t1 AT2G27030 46.457 127 68 0 22 148 4 130 1.47e-34 119
MS.gene87673.t1 AT2G27030 46.970 66 35 0 29 94 84 149 9.81e-13 63.2
MS.gene87673.t1 AT3G43810 46.825 126 67 0 23 148 5 130 2.02e-34 120
MS.gene87673.t1 AT3G43810 46.154 65 35 0 29 93 84 148 7.17e-12 61.2
MS.gene87673.t1 AT5G21274 45.669 127 69 0 22 148 4 130 4.67e-34 117
MS.gene87673.t1 AT5G21274 45.455 66 36 0 29 94 84 149 6.22e-12 60.5
MS.gene87673.t1 AT3G22930 44.094 127 71 0 22 148 27 153 3.94e-32 113
MS.gene87673.t1 AT3G22930 49.206 63 32 0 29 91 107 169 5.75e-13 63.5
MS.gene87673.t1 AT5G37780 41.549 142 68 1 22 148 4 145 1.65e-31 111
MS.gene87673.t1 AT5G37780 48.485 66 34 0 29 94 99 164 6.82e-13 63.2
MS.gene87673.t1 AT2G41110 42.446 139 68 1 22 148 4 142 2.97e-31 110
MS.gene87673.t1 AT2G41110 46.970 66 35 0 29 94 96 161 1.74e-12 62.0
MS.gene87673.t1 AT4G14640 42.063 126 73 0 23 148 6 131 5.58e-30 107
MS.gene87673.t1 AT4G14640 50.000 64 32 0 28 91 84 147 4.18e-14 65.9
MS.gene87673.t1 AT5G37780 38.562 153 68 1 22 148 4 156 9.37e-30 107
MS.gene87673.t1 AT5G37780 48.485 66 34 0 29 94 110 175 6.61e-13 63.5
MS.gene87673.t1 AT1G66410 43.066 137 68 1 22 148 4 140 2.24e-29 105
MS.gene87673.t1 AT1G66410 48.485 66 34 0 29 94 94 159 5.14e-13 63.5
MS.gene87673.t1 AT5G37780 44.340 106 59 0 43 148 12 117 5.03e-27 99.0
MS.gene87673.t1 AT5G37780 48.485 66 34 0 29 94 71 136 3.21e-13 63.5
MS.gene87673.t1 AT3G22930 44.762 105 58 0 22 126 27 131 3.95e-26 96.7
MS.gene87673.t1 AT1G66410 44.681 94 52 0 55 148 1 94 1.04e-23 89.7
MS.gene87673.t1 AT1G66410 48.485 66 34 0 29 94 48 113 1.68e-13 63.5
MS.gene87673.t1 AT1G66410 44.681 94 52 0 55 148 1 94 1.04e-23 89.7
MS.gene87673.t1 AT1G66410 48.485 66 34 0 29 94 48 113 1.68e-13 63.5
MS.gene87673.t1 AT4G14640 42.718 103 59 0 23 125 6 108 1.53e-23 89.7
MS.gene87673.t1 AT3G43810 44.681 94 52 0 55 148 1 94 3.60e-23 88.6
MS.gene87673.t1 AT3G43810 46.970 66 35 0 29 94 48 113 6.78e-13 62.0
MS.gene87673.t1 AT3G43810 44.681 94 52 0 55 148 1 94 3.60e-23 88.6
MS.gene87673.t1 AT3G43810 46.970 66 35 0 29 94 48 113 6.78e-13 62.0
MS.gene87673.t1 AT4G14640 39.048 105 64 0 44 148 9 113 2.39e-22 87.0
MS.gene87673.t1 AT4G14640 50.000 64 32 0 28 91 66 129 2.04e-14 66.2
MS.gene87673.t1 AT1G24620 34.959 123 80 0 29 151 36 158 1.88e-21 85.9
MS.gene87673.t1 AT1G24620 45.312 64 35 0 29 92 109 172 1.69e-13 65.1
MS.gene87673.t1 AT3G51920 34.921 126 82 0 23 148 5 130 2.13e-19 79.7
MS.gene87673.t1 AT2G41100 33.566 143 78 2 23 148 59 201 4.73e-19 81.6
MS.gene87673.t1 AT2G41100 34.314 102 64 1 12 113 138 236 1.30e-12 64.3
MS.gene87673.t1 AT2G41100 33.566 143 78 2 23 148 59 201 4.73e-19 81.6
MS.gene87673.t1 AT2G41100 34.314 102 64 1 12 113 138 236 1.30e-12 64.3
MS.gene87673.t1 AT2G41100 33.566 143 78 2 23 148 59 201 4.73e-19 81.6
MS.gene87673.t1 AT2G41100 34.314 102 64 1 12 113 138 236 1.30e-12 64.3
MS.gene87673.t1 AT2G41090 34.375 128 81 1 21 148 3 127 6.02e-19 79.7
MS.gene87673.t1 AT2G41100 33.566 143 78 2 23 148 94 236 8.11e-19 81.6
MS.gene87673.t1 AT2G41100 29.605 152 91 2 23 158 5 156 3.05e-16 74.7
MS.gene87673.t1 AT2G41100 34.314 102 64 1 12 113 173 271 1.73e-12 63.9
MS.gene87673.t1 AT2G41100 33.566 143 78 2 23 148 94 236 8.11e-19 81.6
MS.gene87673.t1 AT2G41100 29.605 152 91 2 23 158 5 156 3.05e-16 74.7
MS.gene87673.t1 AT2G41100 34.314 102 64 1 12 113 173 271 1.73e-12 63.9
MS.gene87673.t1 AT3G25600 33.065 124 81 1 29 150 11 134 8.54e-19 78.6
MS.gene87673.t1 AT1G18530 33.858 127 81 2 26 150 4 129 1.19e-18 78.2
MS.gene87673.t1 AT1G12310 31.579 133 89 1 19 151 2 132 1.71e-18 77.4
MS.gene87673.t1 AT5G23580 35.659 129 80 2 23 151 320 445 7.21e-18 79.7
MS.gene87673.t1 AT1G62820 31.061 132 89 1 20 151 3 132 1.41e-17 75.1
MS.gene87673.t1 AT1G05990 36.066 122 75 2 30 148 5 126 3.78e-17 73.9
MS.gene87673.t1 AT2G43290 37.037 108 63 2 30 132 65 172 4.03e-17 75.5
MS.gene87673.t1 AT1G18210 32.500 120 77 1 29 148 22 137 9.15e-17 73.6
MS.gene87673.t1 AT1G18210 39.130 69 42 0 24 92 86 154 3.27e-11 58.9
MS.gene87673.t1 AT1G18210 32.500 120 77 1 29 148 22 137 9.15e-17 73.6
MS.gene87673.t1 AT1G18210 39.130 69 42 0 24 92 86 154 3.27e-11 58.9
MS.gene87673.t1 AT5G19360 34.921 126 80 2 23 148 366 489 1.75e-16 75.9
MS.gene87673.t1 AT5G12180 34.921 126 80 2 23 148 371 494 2.46e-16 75.5
MS.gene87673.t1 AT1G32250 31.343 134 86 1 23 150 9 142 2.59e-16 72.0
MS.gene87673.t1 AT4G09570 33.333 126 81 2 23 148 323 445 1.05e-15 73.6
MS.gene87673.t1 AT1G35670 32.540 126 82 2 23 148 324 446 4.04e-15 72.0
MS.gene87673.t1 AT5G37770 32.520 123 79 1 30 148 17 139 4.24e-15 68.9
MS.gene87673.t1 AT5G37770 46.875 64 34 0 29 92 93 156 2.20e-14 67.0
MS.gene87673.t1 AT5G37770 32.520 123 79 1 30 148 17 139 4.24e-15 68.9
MS.gene87673.t1 AT5G37770 46.875 64 34 0 29 92 93 156 2.20e-14 67.0
MS.gene87673.t1 AT2G36180 37.903 124 74 2 31 151 1 124 4.66e-15 68.6
MS.gene87673.t1 AT1G66400 31.148 122 82 1 29 148 14 135 6.55e-15 68.2
MS.gene87673.t1 AT1G66400 42.857 63 36 0 29 91 89 151 1.54e-11 59.3
MS.gene87673.t1 AT1G73630 28.358 134 92 1 15 148 5 134 7.33e-15 68.2
MS.gene87673.t1 AT3G59440 30.894 123 82 2 30 150 51 172 9.83e-15 68.6
MS.gene87673.t1 AT3G20410 35.200 125 75 3 29 151 395 515 2.95e-14 69.7
MS.gene87673.t1 AT3G20410 35.200 125 75 3 29 151 395 515 2.95e-14 69.7
MS.gene87673.t1 AT2G15680 29.801 151 97 2 5 148 18 166 1.05e-13 65.9
MS.gene87673.t1 AT1G76040 35.606 132 79 4 22 151 408 535 1.53e-13 67.4
MS.gene87673.t1 AT1G61950 34.615 130 79 3 21 148 395 520 1.60e-13 67.4
MS.gene87673.t1 AT1G50700 34.400 125 76 3 29 151 377 497 1.75e-13 67.4
MS.gene87673.t1 AT4G04720 31.783 129 86 2 23 151 377 503 1.98e-13 67.0
MS.gene87673.t1 AT4G04720 31.783 129 86 2 23 151 377 503 1.98e-13 67.0
MS.gene87673.t1 AT4G21940 33.594 128 79 3 23 148 399 522 2.29e-13 67.0
MS.gene87673.t1 AT1G76040 35.606 132 79 4 22 151 170 297 2.35e-13 66.6
MS.gene87673.t1 AT1G76040 35.606 132 79 4 22 151 170 297 2.35e-13 66.6
MS.gene87673.t1 AT4G21940 33.594 128 79 3 23 148 399 522 2.79e-13 66.6
MS.gene87673.t1 AT2G41100 36.264 91 55 1 23 113 5 92 3.80e-13 63.5
MS.gene87673.t1 AT4G03290 29.839 124 82 2 30 148 5 128 3.86e-13 63.5
MS.gene87673.t1 AT2G41100 34.314 102 64 1 12 113 48 146 4.82e-13 64.3
MS.gene87673.t1 AT4G35310 30.233 129 87 2 23 151 395 520 1.24e-12 64.7
MS.gene87673.t1 AT4G35310 30.233 129 87 2 23 151 395 520 1.24e-12 64.7
MS.gene87673.t1 AT4G38230 30.233 129 87 2 23 151 352 477 1.27e-12 64.7
MS.gene87673.t1 AT4G38230 30.233 129 87 2 23 151 322 447 1.42e-12 64.7
MS.gene87673.t1 AT4G38230 30.233 129 87 2 23 151 322 447 1.42e-12 64.7
MS.gene87673.t1 AT4G38230 30.233 129 87 2 23 151 178 303 1.65e-12 64.3
MS.gene87673.t1 AT4G12860 30.081 123 84 1 28 148 3 125 2.24e-12 61.6
MS.gene87673.t1 AT2G17290 30.233 129 87 2 23 151 383 508 2.40e-12 63.9
MS.gene87673.t1 AT2G17290 30.233 129 87 2 23 151 383 508 2.40e-12 63.9
MS.gene87673.t1 AT3G10660 29.688 128 87 2 23 150 484 608 2.70e-12 63.9
MS.gene87673.t1 AT3G10660 29.688 128 87 2 23 150 484 608 2.70e-12 63.9
MS.gene87673.t1 AT5G17470 35.246 122 77 2 31 150 3 124 4.02e-12 60.8
MS.gene87673.t1 AT4G04740 30.534 131 85 3 23 151 366 492 4.70e-12 63.2
MS.gene87673.t1 AT4G04740 30.534 131 85 3 23 151 366 492 4.70e-12 63.2
MS.gene87673.t1 AT4G04740 30.534 131 85 3 23 151 366 492 4.70e-12 63.2
MS.gene87673.t1 AT4G04740 30.534 131 85 3 23 151 366 492 4.70e-12 63.2
MS.gene87673.t1 AT4G04740 30.534 131 85 3 23 151 366 492 4.70e-12 63.2
MS.gene87673.t1 AT4G04740 30.534 131 85 3 23 151 366 492 4.70e-12 63.2
MS.gene87673.t1 AT4G23650 29.921 127 87 2 22 148 375 499 5.05e-12 63.2
MS.gene87673.t1 AT4G04740 30.075 133 87 3 23 153 366 494 5.95e-12 62.8
MS.gene87673.t1 AT3G50770 29.730 148 97 3 2 144 38 183 6.58e-12 61.2
MS.gene87673.t1 AT3G07490 30.579 121 82 1 30 148 5 125 6.64e-12 60.5
MS.gene87673.t1 AT5G04870 29.457 129 88 2 23 151 448 573 7.27e-12 62.8
MS.gene87673.t1 AT4G04710 32.308 130 84 3 23 151 330 456 7.62e-12 62.4
MS.gene87673.t1 AT4G04710 32.308 130 84 3 23 151 343 469 8.53e-12 62.4
MS.gene87673.t1 AT4G04710 32.308 130 84 3 23 151 316 442 8.57e-12 62.4
MS.gene87673.t1 AT3G10190 31.707 123 81 3 30 150 70 191 1.34e-11 60.5
MS.gene87673.t1 AT2G38910 28.682 129 89 2 23 151 432 557 1.44e-11 61.6
MS.gene87673.t1 AT3G03400 31.667 120 80 1 31 148 6 125 2.09e-11 58.5
MS.gene87673.t1 AT4G04700 30.000 130 89 2 22 151 328 455 2.76e-11 60.8
MS.gene87673.t1 AT3G03000 43.750 64 36 0 30 93 94 157 3.70e-11 58.5
MS.gene87673.t1 AT1G76040 39.796 98 54 3 22 117 408 502 6.25e-11 60.1
MS.gene87673.t1 AT4G04695 29.231 130 90 2 22 151 328 455 6.36e-11 59.7
MS.gene87673.t1 AT5G42380 27.869 122 87 1 30 150 49 170 7.51e-11 58.2

Find 28 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTGTTGTTGAATCTTC+TGG 0.148468 7.1:+28704210 None:intergenic
AGTGTCTCTTTCTCCTATTT+TGG 0.237506 7.1:+28703330 None:intergenic
CAGTCATCTTCTATACTTAG+AGG 0.308294 7.1:-28704238 MS.gene87673:CDS
TTTGTGGAAACTTACTATTT+TGG 0.351393 7.1:+28703077 None:intergenic
TCTTATCTTTGTAGGGCCCT+TGG 0.375272 7.1:-28703904 MS.gene87673:intron
CACATGATGACGGCCAAAAT+AGG 0.383388 7.1:-28703343 MS.gene87673:CDS
AAATGATAGCAGATGTCGAC+AGG 0.463318 7.1:-28703402 MS.gene87673:CDS
AACTAGCAAGGATATGTTTG+TGG 0.477865 7.1:+28703061 None:intergenic
TTATTCGACACTGATGGCTC+AGG 0.496240 7.1:-28704130 MS.gene87673:intron
TGTATTGTAGGGTAAGATAT+CGG 0.507847 7.1:-28703182 MS.gene87673:intron
CATAGCAACATTAAGCTCCT+TGG 0.513823 7.1:+28704003 None:intergenic
TTTAGGTACTATTGATGCCA+AGG 0.521565 7.1:-28704020 MS.gene87673:intron
TGATAGAGAGATTCAGGAGA+TGG 0.522125 7.1:-28703113 MS.gene87673:CDS
TTTGAATTATTCGACACTGA+TGG 0.531996 7.1:-28704136 MS.gene87673:CDS
CTTCAGTCATCTCAAATCCA+AGG 0.540688 7.1:+28703887 None:intergenic
TAGCAGATGTCGACAGGGAT+GGG 0.548013 7.1:-28703396 MS.gene87673:CDS
AAGCGGATTGCAAAAGAGCT+AGG 0.569005 7.1:-28703148 MS.gene87673:CDS
AGGAGAAAGAGACACTAAAG+AGG 0.570607 7.1:-28703323 MS.gene87673:CDS
ATAGCAGATGTCGACAGGGA+TGG 0.573080 7.1:-28703397 MS.gene87673:CDS
GATGTCGACAGGGATGGGAG+TGG 0.578755 7.1:-28703391 MS.gene87673:CDS
TTCAGTCATCTCAAATCCAA+GGG 0.589829 7.1:+28703888 None:intergenic
TGGATTTGAGATGACTGAAG+AGG 0.608260 7.1:-28703884 MS.gene87673:intron
AGGAGCTTAATGTTGCTATG+AGG 0.614526 7.1:-28704000 MS.gene87673:intron
GTAGGGTAAGATATCGGCAT+CGG 0.618796 7.1:-28703176 MS.gene87673:intron
AGATTCAACAACAAACAAAG+AGG 0.630713 7.1:-28704205 MS.gene87673:CDS
TGAATTTGAGCACATGATGA+CGG 0.665935 7.1:-28703353 MS.gene87673:CDS
TATCGGCATCGGATATCAAG+CGG 0.676928 7.1:-28703165 MS.gene87673:CDS
AATGATAGCAGATGTCGACA+GGG 0.695960 7.1:-28703401 MS.gene87673:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGTTTTCATAATAATT+GGG - chr7.1:28703494-28703513 MS.gene87673:intron 10.0%
!!! TAAAATGTTTTCATAATAAT+TGG - chr7.1:28703493-28703512 MS.gene87673:intron 10.0%
!!! TATCTTGTTTAATGATTTTT+AGG - chr7.1:28703412-28703431 MS.gene87673:CDS 15.0%
!! ATCTTATTCTTATCTTTGTA+GGG - chr7.1:28703538-28703557 MS.gene87673:intron 20.0%
!! CTTATACTAATTTAGAGATA+GGG - chr7.1:28703880-28703899 MS.gene87673:intron 20.0%
!! GGTAATTAATGTTTATGTTT+GGG - chr7.1:28703640-28703659 MS.gene87673:intron 20.0%
!! TCTTATACTAATTTAGAGAT+AGG - chr7.1:28703879-28703898 MS.gene87673:intron 20.0%
!! TTTGATTGAAAAATAAGAAC+AGG + chr7.1:28703082-28703101 None:intergenic 20.0%
!!! TTTTGTCTTGATCAATAATA+TGG + chr7.1:28704168-28704187 None:intergenic 20.0%
! AAAAGATAGTTCTTGATCAA+GGG + chr7.1:28703173-28703192 None:intergenic 25.0%
! AAATGCTACAACAATAAAAG+AGG + chr7.1:28703847-28703866 None:intergenic 25.0%
! AGATTATGTACAATATTGTC+AGG - chr7.1:28703941-28703960 MS.gene87673:intron 25.0%
! CATCTTATTCTTATCTTTGT+AGG - chr7.1:28703537-28703556 MS.gene87673:intron 25.0%
! CATTAAACAAGATATCAGTA+TGG + chr7.1:28703406-28703425 None:intergenic 25.0%
! CGGTAATTAATGTTTATGTT+TGG - chr7.1:28703639-28703658 MS.gene87673:intron 25.0%
! TGATATTTACACAAAAGACT+AGG + chr7.1:28703790-28703809 None:intergenic 25.0%
!! AGGTATTGTTGTTATTCATA+AGG - chr7.1:28703469-28703488 MS.gene87673:intron 25.0%
!! TTTGTGGAAACTTACTATTT+TGG + chr7.1:28704375-28704394 None:intergenic 25.0%
!!! CAAGAATATTTTTGACTAGA+TGG + chr7.1:28703369-28703388 None:intergenic 25.0%
!!! TGATTCTCATTGTATTTTTG+TGG - chr7.1:28704240-28704259 MS.gene87673:intron 25.0%
AGATTCAACAACAAACAAAG+AGG - chr7.1:28703244-28703263 MS.gene87673:intron 30.0%
ATTGTTGTAGCATTTAGCTA+TGG - chr7.1:28703852-28703871 MS.gene87673:intron 30.0%
ATTTAGAGATAGGGATTCAA+TGG - chr7.1:28703889-28703908 MS.gene87673:CDS 30.0%
CAAAAGATAGTTCTTGATCA+AGG + chr7.1:28703174-28703193 None:intergenic 30.0%
GATATCAGTATGGTATAAAG+AGG + chr7.1:28703396-28703415 None:intergenic 30.0%
TGTATTGTAGGGTAAGATAT+CGG - chr7.1:28704267-28704286 MS.gene87673:intron 30.0%
TTTGAATTATTCGACACTGA+TGG - chr7.1:28703313-28703332 MS.gene87673:CDS 30.0%
! AGACTAGGAATTATTTTCCT+TGG + chr7.1:28703775-28703794 None:intergenic 30.0%
! TTTTACTGATAGAGAGATTC+AGG - chr7.1:28704330-28704349 MS.gene87673:intron 30.0%
!! AATTTGCTGAAATGACACAA+TGG + chr7.1:28704023-28704042 None:intergenic 30.0%
!! TTGTTTGTTGTTGAATCTTC+TGG + chr7.1:28703242-28703261 None:intergenic 30.0%
ACAACATAATATGCAACGAG+TGG + chr7.1:28703617-28703636 None:intergenic 35.0%
CAACGAGTGGTTATAAAAAG+GGG + chr7.1:28703604-28703623 None:intergenic 35.0%
CAGTCATCTTCTATACTTAG+AGG - chr7.1:28703211-28703230 MS.gene87673:intron 35.0%
GACTAGATGGTTATTGTTGA+TGG + chr7.1:28703356-28703375 None:intergenic 35.0%
GCAACGAGTGGTTATAAAAA+GGG + chr7.1:28703605-28703624 None:intergenic 35.0%
TGAATTTGAGCACATGATGA+CGG - chr7.1:28704096-28704115 MS.gene87673:intron 35.0%
TGCAACGAGTGGTTATAAAA+AGG + chr7.1:28703606-28703625 None:intergenic 35.0%
TTCAGTCATCTCAAATCCAA+GGG + chr7.1:28703564-28703583 None:intergenic 35.0%
TTTAGGTACTATTGATGCCA+AGG - chr7.1:28703429-28703448 MS.gene87673:intron 35.0%
TTTGTGGTCACTGTATTGTA+GGG - chr7.1:28704256-28704275 MS.gene87673:intron 35.0%
! AGTGTCTCTTTCTCCTATTT+TGG + chr7.1:28704122-28704141 None:intergenic 35.0%
! GGAATTATTTTCCTTGGCAT+CGG + chr7.1:28703769-28703788 None:intergenic 35.0%
! TTTTGTGGTCACTGTATTGT+AGG - chr7.1:28704255-28704274 MS.gene87673:intron 35.0%
!! AAAAGAGGTATCACAGAGAA+AGG + chr7.1:28703832-28703851 None:intergenic 35.0%
!! AAAGAGGTATCACAGAGAAA+GGG + chr7.1:28703831-28703850 None:intergenic 35.0%
AAATGATAGCAGATGTCGAC+AGG - chr7.1:28704047-28704066 MS.gene87673:intron 40.0%
AATGATAGCAGATGTCGACA+GGG - chr7.1:28704048-28704067 MS.gene87673:intron 40.0%
AGGAGAAAGAGACACTAAAG+AGG - chr7.1:28704126-28704145 MS.gene87673:intron 40.0%
AGGAGCTTAATGTTGCTATG+AGG - chr7.1:28703449-28703468 MS.gene87673:intron 40.0%
CATAGCAACATTAAGCTCCT+TGG + chr7.1:28703449-28703468 None:intergenic 40.0%
CGTTGCATATTATGTTGTCG+CGG - chr7.1:28703619-28703638 MS.gene87673:intron 40.0%
CTTCAGTCATCTCAAATCCA+AGG + chr7.1:28703565-28703584 None:intergenic 40.0%
GGTTATAAAAAGGGGCAGAA+GGG + chr7.1:28703596-28703615 None:intergenic 40.0%
GTATCACAGAGAAAGGGAAT+TGG + chr7.1:28703825-28703844 None:intergenic 40.0%
GTTATAAAAAGGGGCAGAAG+GGG + chr7.1:28703595-28703614 None:intergenic 40.0%
TGATAGAGAGATTCAGGAGA+TGG - chr7.1:28704336-28704355 MS.gene87673:intron 40.0%
TGGTTATAAAAAGGGGCAGA+AGG + chr7.1:28703597-28703616 None:intergenic 40.0%
TTATAAAAAGGGGCAGAAGG+GGG + chr7.1:28703594-28703613 None:intergenic 40.0%
! TGGATTTGAGATGACTGAAG+AGG - chr7.1:28703565-28703584 MS.gene87673:intron 40.0%
GTAGGGTAAGATATCGGCAT+CGG - chr7.1:28704273-28704292 MS.gene87673:intron 45.0%
TATAAAAAGGGGCAGAAGGG+GGG + chr7.1:28703593-28703612 None:intergenic 45.0%
TCTTATCTTTGTAGGGCCCT+TGG - chr7.1:28703545-28703564 MS.gene87673:intron 45.0%
TTATTCGACACTGATGGCTC+AGG - chr7.1:28703319-28703338 MS.gene87673:CDS 45.0%
! TATCGGCATCGGATATCAAG+CGG - chr7.1:28704284-28704303 MS.gene87673:intron 45.0%
!! AAGCGGATTGCAAAAGAGCT+AGG - chr7.1:28704301-28704320 MS.gene87673:intron 45.0%
!! CACATGATGACGGCCAAAAT+AGG - chr7.1:28704106-28704125 MS.gene87673:intron 45.0%
!!! TTTTCCTTGGCATCGGTGAA+TGG + chr7.1:28703762-28703781 None:intergenic 45.0%
ATAGCAGATGTCGACAGGGA+TGG - chr7.1:28704052-28704071 MS.gene87673:intron 50.0%
TAGCAGATGTCGACAGGGAT+GGG - chr7.1:28704053-28704072 MS.gene87673:intron 50.0%
TCATCCATTCACCGATGCCA+AGG - chr7.1:28703755-28703774 MS.gene87673:intron 50.0%
GATGTCGACAGGGATGGGAG+TGG - chr7.1:28704058-28704077 MS.gene87673:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 28703063 28704408 28703063 ID=MS.gene87673
chr7.1 mRNA 28703063 28704408 28703063 ID=MS.gene87673.t1;Parent=MS.gene87673
chr7.1 exon 28704406 28704408 28704406 ID=MS.gene87673.t1.exon1;Parent=MS.gene87673.t1
chr7.1 CDS 28704406 28704408 28704406 ID=cds.MS.gene87673.t1;Parent=MS.gene87673.t1
chr7.1 exon 28704131 28704257 28704131 ID=MS.gene87673.t1.exon2;Parent=MS.gene87673.t1
chr7.1 CDS 28704131 28704257 28704131 ID=cds.MS.gene87673.t1;Parent=MS.gene87673.t1
chr7.1 exon 28704001 28704037 28704001 ID=MS.gene87673.t1.exon3;Parent=MS.gene87673.t1
chr7.1 CDS 28704001 28704037 28704001 ID=cds.MS.gene87673.t1;Parent=MS.gene87673.t1
chr7.1 exon 28703885 28703912 28703885 ID=MS.gene87673.t1.exon4;Parent=MS.gene87673.t1
chr7.1 CDS 28703885 28703912 28703885 ID=cds.MS.gene87673.t1;Parent=MS.gene87673.t1
chr7.1 exon 28703282 28703434 28703282 ID=MS.gene87673.t1.exon5;Parent=MS.gene87673.t1
chr7.1 CDS 28703282 28703434 28703282 ID=cds.MS.gene87673.t1;Parent=MS.gene87673.t1
chr7.1 exon 28703063 28703194 28703063 ID=MS.gene87673.t1.exon6;Parent=MS.gene87673.t1
chr7.1 CDS 28703063 28703194 28703063 ID=cds.MS.gene87673.t1;Parent=MS.gene87673.t1
Gene Sequence

>MS.gene87673

ATGGTACGATCTCTCTCCTGTTCTTATTTTTCAATCAAAGTAACAGATCATGATCTGTAGTCATTATTAATTTTGCAAATTTTATCTTTAAACTATTAGAGTAGATTCCCTTGATCAAGAACTATCTTTTGATGTGCAATTTTGTTATCAGTCATCTTCTATACTTAGAGGAGATTCCAGAAGATTCAACAACAAACAAAGAGGAAAACATCATTTGACGCAACAGAAGAGACAAGAGATTAAAGAAGCTTTTGAATTATTCGACACTGATGGCTCAGGTTTACACTTTACCATCAACAATAACCATCTAGTCAAAAATATTCTTGATCTCCTCTTTATACCATACTGATATCTTGTTTAATGATTTTTAGGTACTATTGATGCCAAGGAGCTTAATGTTGCTATGAGGTATTGTTGTTATTCATAAGGTTAAAATGTTTTCATAATAATTGGGCATGTTGTTTTCATAACATACATCTTATTCTTATCTTTGTAGGGCCCTTGGATTTGAGATGACTGAAGAGGTACCCCCCTTCTGCCCCTTTTTATAACCACTCGTTGCATATTATGTTGTCGCGGTAATTAATGTTTATGTTTGGGAAAGTAACAAGTACATCTTGTAATTTGATAATATCTAAGTACTTTCATTCAATTTTCATACAATTGAGCATAGTTTGCAGATTTTAATTATTTCATCCATTCACCGATGCCAAGGAAAATAATTCCTAGTCTTTTGTGTAAATATCACGAGCAATGAAGCCAATTCCCTTTCTCTGTGATACCTCTTTTATTGTTGTAGCATTTAGCTATGGTTGTTCTTATACTAATTTAGAGATAGGGATTCAATGGCTAATGAAATTTGATTGTAGAATAGTAATAGATTATGTACAATATTGTCAGGATTTTGTGATGTTATTCTTTGTTAAAGTTTTATATGCATTCTCTCTAATAGATCATCCATTGTGTCATTTCAGCAAATTGAGCAAATGATAGCAGATGTCGACAGGGATGGGAGTGGAGCAATCGACTATGATGAATTTGAGCACATGATGACGGCCAAAATAGGAGAAAGAGACACTAAAGAGGAGCTCATGAAAGCTTTCCATATTATTGATCAAGACAAAAATGTGAATATCAGATATCTTCTCTACTATACATCATTAGTATTGCTTCTTATTGATTCTCATTGTATTTTTGTGGTCACTGTATTGTAGGGTAAGATATCGGCATCGGATATCAAGCGGATTGCAAAAGAGCTAGGTCAAAATTTTACTGATAGAGAGATTCAGGAGATGGTTGATGAAGCAGACCAAAATAGTAAGTTTCCACAAACATATCCTTGCTAG

Protein sequence

>MS.gene87673.t1

MSSSILRGDSRRFNNKQRGKHHLTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIEQMIADVDRDGSGAIDYDEFEHMMTAKIGERDTKEELMKAFHIIDQDKNGKISASDIKRIAKELGQNFTDREIQEMVDEADQNSKFPQTYPC